{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T15:05:32Z","timestamp":1784646332720,"version":"3.55.0"},"reference-count":58,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2026,6,27]],"date-time":"2026-06-27T00:00:00Z","timestamp":1782518400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,6,27]],"date-time":"2026-06-27T00:00:00Z","timestamp":1782518400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100003787","name":"Natural Science Foundation of Hebei Province","doi-asserted-by":"publisher","award":["C2024207001"],"award-info":[{"award-number":["C2024207001"]}],"id":[{"id":"10.13039\/501100003787","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Planta"],"published-print":{"date-parts":[[2026,8]]},"DOI":"10.1007\/s00425-026-05057-0","type":"journal-article","created":{"date-parts":[[2026,6,27]],"date-time":"2026-06-27T19:16:03Z","timestamp":1782587763000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Genome-wide characterization and cold-responsive expression profile of Rab GTPases and their regulatory proteins in O. rufipogen"],"prefix":"10.1007","volume":"264","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9720-1532","authenticated-orcid":false,"given":"Chenmin","family":"Huo","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanghang","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuemiao","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuangxin","family":"Han","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bijing","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Baowen","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,6,27]]},"reference":[{"key":"5057_CR1","doi-asserted-by":"publisher","first-page":"2403","DOI":"10.1093\/jxb\/ern132","volume":"59","author":"P Abbal","year":"2008","unstructured":"Abbal P, Pradal M, Muniz L, Sauvage FX, Chatelet P, Ueda T, Tesniere C (2008) Molecular characterization and expression analysis of the Rab GTPase family in Vitis vinifera reveal the specific expression of a VvRabA protein. J Exp Bot 59:2403\u20132416. https:\/\/doi.org\/10.1093\/jxb\/ern132","journal-title":"J Exp Bot"},{"key":"5057_CR2","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1007\/s00299-007-0446-0","volume":"27","author":"PK Agarwal","year":"2008","unstructured":"Agarwal PK, Agarwal P, Jain P, Jha B, Reddy MK, Sopory SK (2008) Constitutive overexpression of a stress-inducible small GTP-binding protein PgRab7 from Pennisetum glaucum enhances abiotic stress tolerance in transgenic tobacco. Plant Cell Rep 27:105\u2013115. https:\/\/doi.org\/10.1007\/s00299-007-0446-0","journal-title":"Plant Cell Rep"},{"key":"5057_CR3","doi-asserted-by":"publisher","first-page":"641","DOI":"10.3390\/plants11050641","volume":"11","author":"HS Al-Zahrani","year":"2022","unstructured":"Al-Zahrani HS, Moussa TAA, Alsamadany H, Hafez RM, Fuller MP (2022) Phylogenetic and expression studies of small GTP-binding proteins in Solanum lycopersicum super strain B. Plants (Basel) 11:641. https:\/\/doi.org\/10.3390\/plants11050641","journal-title":"Plants (Basel)"},{"key":"5057_CR4","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1016\/s0969-2126(03)00034-0","volume":"11","author":"Y An","year":"2003","unstructured":"An Y, Shao Y, Alory C, Matteson J, Sakisaka T, Chen W, Gibbs RA, Wilson IA, Balch WE (2003) Geranylgeranyl switching regulates GDI-Rab GTPase recycling. Structure 11:347\u2013357. https:\/\/doi.org\/10.1016\/s0969-2126(03)00034-0","journal-title":"Structure"},{"key":"5057_CR5","doi-asserted-by":"publisher","first-page":"W202","DOI":"10.1093\/nar\/gkp335","volume":"37","author":"TL Bailey","year":"2009","unstructured":"Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37:W202-208. https:\/\/doi.org\/10.1093\/nar\/gkp335","journal-title":"Nucleic Acids Res"},{"key":"5057_CR6","doi-asserted-by":"publisher","DOI":"10.1016\/j.mocell.2024.100141","volume":"47","author":"D Bong","year":"2024","unstructured":"Bong D, Sohn J, Lee S-JV (2024) Brief guide to RT-qPCR. Mol Cells 47:100141. https:\/\/doi.org\/10.1016\/j.mocell.2024.100141","journal-title":"Mol Cells"},{"key":"5057_CR7","doi-asserted-by":"publisher","first-page":"1972","DOI":"10.1093\/bioinformatics\/btp348","volume":"25","author":"S Capella-Gutierrez","year":"2009","unstructured":"Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972\u20131973. https:\/\/doi.org\/10.1093\/bioinformatics\/btp348","journal-title":"Bioinformatics"},{"key":"5057_CR8","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1186\/s12859-022-04707-w","volume":"23","author":"H Chen","year":"2022","unstructured":"Chen H, Song X, Shang Q, Feng S, Ge W (2022) CFVisual: an interactive desktop platform for drawing gene structure and protein architecture. BMC Bioinformatics 23:178. https:\/\/doi.org\/10.1186\/s12859-022-04707-w","journal-title":"BMC Bioinformatics"},{"key":"5057_CR9","doi-asserted-by":"publisher","first-page":"1733","DOI":"10.1016\/j.molp.2023.09.010","volume":"16","author":"C Chen","year":"2023","unstructured":"Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y, Xia R (2023) TBtools-II: A \u201cone for all, all for one\u201d bioinformatics platform for biological big-data mining. Mol Plant 16:1733\u20131742. https:\/\/doi.org\/10.1016\/j.molp.2023.09.010","journal-title":"Mol Plant"},{"key":"5057_CR10","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1105\/tpc.107.052001","volume":"20","author":"CM Chow","year":"2008","unstructured":"Chow CM, Neto H, Foucart C, Moore I (2008) Rab-A2 and Rab-A3 GTPases define a trans-golgi endosomal membrane domain in Arabidopsis that contributes substantially to the cell plate. Plant Cell 20:101\u2013123. https:\/\/doi.org\/10.1105\/tpc.107.052001","journal-title":"Plant Cell"},{"key":"5057_CR11","doi-asserted-by":"publisher","first-page":"551","DOI":"10.1023\/a:1006098132352","volume":"38","author":"MA Dunn","year":"1998","unstructured":"Dunn MA, White AJ, Vural S, Hughes MA (1998) Identification of promoter elements in a low-temperature-responsive gene (blt4.9) from barley (Hordeum vulgare L.). Plant Mol Biol 38:551\u2013564. https:\/\/doi.org\/10.1023\/a:1006098132352","journal-title":"Plant Mol Biol"},{"key":"5057_CR12","doi-asserted-by":"publisher","first-page":"2829","DOI":"10.1093\/jxb\/erq116","volume":"61","author":"R Falchi","year":"2010","unstructured":"Falchi R, Cipriani G, Marrazzo T, Nonis A, Vizzotto G, Ruperti B (2010) Identification and differential expression dynamics of peach small GTPases encoding genes during fruit development and ripening. J Exp Bot 61:2829\u20132842. https:\/\/doi.org\/10.1093\/jxb\/erq116","journal-title":"J Exp Bot"},{"key":"5057_CR13","doi-asserted-by":"publisher","DOI":"10.1080\/15592324.2018.1432956","volume":"13","author":"AC Flores","year":"2018","unstructured":"Flores AC, Via VD, Savy V, Villagra UM, Zanetti ME, Blanco F (2018) Comparative phylogenetic and expression analysis of small GTPases families in legume and non-legume plants. Plant Signal Behav 13:e1432956. https:\/\/doi.org\/10.1080\/15592324.2018.1432956","journal-title":"Plant Signal Behav"},{"key":"5057_CR14","doi-asserted-by":"publisher","first-page":"704","DOI":"10.1038\/306704a0","volume":"306","author":"D Gallwitz","year":"1983","unstructured":"Gallwitz D, Donath C, Sander C (1983) A yeast gene encoding a protein homologous to the human c-has\/bas proto-oncogene product. Nature 306:704\u2013707. https:\/\/doi.org\/10.1038\/306704a0","journal-title":"Nature"},{"key":"5057_CR15","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1046\/j.1365-313x.1998.00310.x","volume":"16","author":"SJ Gilmour","year":"1998","unstructured":"Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF (1998) Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J 16:433\u2013442. https:\/\/doi.org\/10.1046\/j.1365-313x.1998.00310.x","journal-title":"Plant J"},{"key":"5057_CR16","doi-asserted-by":"publisher","first-page":"3504","DOI":"10.1105\/tpc.107.053876","volume":"19","author":"T Goh","year":"2007","unstructured":"Goh T, Uchida W, Arakawa S, Ito E, Dainobu T, Ebine K, Takeuchi M, Sato K, Ueda T, Nakano A (2007) VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana. Plant Cell 19:3504\u20133515. https:\/\/doi.org\/10.1105\/tpc.107.053876","journal-title":"Plant Cell"},{"key":"5057_CR17","doi-asserted-by":"publisher","first-page":"6342","DOI":"10.1002\/anie.201900585","volume":"59","author":"JL Gray","year":"2020","unstructured":"Gray JL, von Delft F, Brennan PE (2020) Targeting the small GTPase superfamily through their regulatory proteins. Angew Chem Int Ed Engl 59:6342\u20136366. https:\/\/doi.org\/10.1002\/anie.201900585","journal-title":"Angew Chem Int Ed Engl"},{"key":"5057_CR18","doi-asserted-by":"publisher","first-page":"5553","DOI":"10.1093\/jxb\/ert322","volume":"64","author":"MC Hoepflinger","year":"2013","unstructured":"Hoepflinger MC, Geretschlaeger A, Sommer A, Hoeftberger M, Nishiyama T, Sakayama H, Hammerl P, Tenhaken R, Ueda T, Foissner I (2013) Molecular and biochemical analysis of the first ARA6 homologue, a RAB5 GTPase, from green algae. J Exp Bot 64:5553\u20135568. https:\/\/doi.org\/10.1093\/jxb\/ert322","journal-title":"J Exp Bot"},{"key":"5057_CR19","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1111\/febs.15453","volume":"288","author":"Y Homma","year":"2021","unstructured":"Homma Y, Hiragi S, Fukuda M (2021) Rab family of small GTPases: an updated view on their regulation and functions. FEBS J 288:36\u201355. https:\/\/doi.org\/10.1111\/febs.15453","journal-title":"FEBS J"},{"key":"5057_CR20","doi-asserted-by":"publisher","first-page":"843","DOI":"10.1093\/oxfordjournals.molbev.a040261","volume":"12","author":"J Huelsenbeck","year":"1995","unstructured":"Huelsenbeck J (1995) The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Mol Biol Evol 12:843\u2013849. https:\/\/doi.org\/10.1093\/oxfordjournals.molbev.a040261","journal-title":"Mol Biol Evol"},{"key":"5057_CR21","doi-asserted-by":"publisher","first-page":"126","DOI":"10.11686\/cyxb2023251","volume":"33","author":"C Huo","year":"2024","unstructured":"Huo C, Yuan M, Zhang B, Wang R (2024) Genome-wide identification and bioinformatics analysis of CBF\/DREB1 transcription factors in wild rice. J Acta Prataculturae Sinica 33:126\u2013144. https:\/\/doi.org\/10.11686\/cyxb2023251","journal-title":"J Acta Prataculturae Sinica"},{"key":"5057_CR22","doi-asserted-by":"publisher","first-page":"266","DOI":"10.3969\/j.issn.1000-1565.2025.03.005","volume":"45","author":"C Huo","year":"2025","unstructured":"Huo C, Xu T, Wang J, Zhou S (2025) Identification of OrCaM\/OrCML gene family in Dongxiang wild rice and analysis of expression patterns under cold stress. J Hebei Univ (Natl Sci Ed) 45:266\u2013277. https:\/\/doi.org\/10.3969\/j.issn.1000-1565.2025.03.005","journal-title":"J Hebei Univ (Natl Sci Ed)"},{"key":"5057_CR23","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1152\/physiolgenomics.00210.2005","volume":"24","author":"S-Y Jiang","year":"2006","unstructured":"Jiang S-Y, Ramachandran S (2006) Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes. Physiol Genomics 24:235\u2013251. https:\/\/doi.org\/10.1152\/physiolgenomics.00210.2005","journal-title":"Physiol Genomics"},{"key":"5057_CR24","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1093\/nar\/30.1.325","volume":"30","author":"M Lescot","year":"2002","unstructured":"Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouze P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325\u2013327. https:\/\/doi.org\/10.1093\/nar\/30.1.325","journal-title":"Nucleic Acids Res"},{"key":"5057_CR25","doi-asserted-by":"publisher","DOI":"10.1016\/j.jplph.2024.154239","volume":"296","author":"Y Lu","year":"2024","unstructured":"Lu Y, Cheng K, Tang H, Li J, Zhang C, Zhu H (2024) The role of Rab GTPase in plant development and stress. J Plant Physiol 296:154239. https:\/\/doi.org\/10.1016\/j.jplph.2024.154239","journal-title":"J Plant Physiol"},{"key":"5057_CR26","doi-asserted-by":"publisher","first-page":"1391","DOI":"10.1105\/tpc.10.8.1391","volume":"10","author":"Q Liu","year":"1998","unstructured":"Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1998) Two transcription factors, DREB1 and DREB2, with an EREBP\/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10:1391\u20131406. https:\/\/doi.org\/10.1105\/tpc.10.8.1391","journal-title":"Plant Cell"},{"key":"5057_CR27","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1016\/j.gene.2014.02.022","volume":"540","author":"Z-L Liu","year":"2014","unstructured":"Liu Z-L, Luo C, Dong L, Van Toan C, Wei P-X, He X-H (2014) Molecular characterization and expression analysis of a GTP-binding protein (MiRab5) in Mangifera indica. Gene 540:86\u201391. https:\/\/doi.org\/10.1016\/j.gene.2014.02.022","journal-title":"Gene"},{"key":"5057_CR28","doi-asserted-by":"publisher","first-page":"15466","DOI":"10.1038\/s41598-023-41269-0","volume":"13","author":"SN Mandal","year":"2023","unstructured":"Mandal SN, Sanchez J, Bhowmick R, Bello OR, Van-Beek CR, de Los Reyes BG (2023) Novel genes and alleles of the BTB\/POZ protein family in Oryza rufipogon. Sci Rep 13:15466. https:\/\/doi.org\/10.1038\/s41598-023-41269-0","journal-title":"Sci Rep"},{"key":"5057_CR29","doi-asserted-by":"publisher","first-page":"1359","DOI":"10.1007\/s00122-015-2511-3","volume":"128","author":"D Mao","year":"2015","unstructured":"Mao D, Yu L, Chen D, Li L, Zhu Y, Xiao Y, Zhang D, Chen C (2015) Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat. Theor Appl Genet 128:1359\u20131371. https:\/\/doi.org\/10.1007\/s00122-015-2511-3","journal-title":"Theor Appl Genet"},{"key":"5057_CR30","doi-asserted-by":"publisher","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","volume":"37","author":"BQ Minh","year":"2020","unstructured":"Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Von Haeseler A, Lanfear R (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. J Molecular Biology Evolution 37:1530\u20131534. https:\/\/doi.org\/10.1093\/molbev\/msaa015","journal-title":"J Molecular Biology Evolution"},{"key":"5057_CR31","doi-asserted-by":"publisher","first-page":"694","DOI":"10.1016\/j.pbi.2004.09.014","volume":"7","author":"AJ Molendijk","year":"2004","unstructured":"Molendijk AJ, Ruperti B, Palme K (2004) Small GTPases in vesicle trafficking. Curr Opin Plant Biol 7:694\u2013700. https:\/\/doi.org\/10.1016\/j.pbi.2004.09.014","journal-title":"Curr Opin Plant Biol"},{"key":"5057_CR32","doi-asserted-by":"publisher","first-page":"2807","DOI":"10.1016\/j.molcel.2024.06.027","volume":"84","author":"AM Mozzarelli","year":"2024","unstructured":"Mozzarelli AM, Simanshu DK, Castel P (2024) Functional and structural insights into RAS effector proteins. Mol Cell 84:2807\u20132821. https:\/\/doi.org\/10.1016\/j.molcel.2024.06.027","journal-title":"Mol Cell"},{"key":"5057_CR34","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijbiomac.2025.139828","volume":"296","author":"ZA Parray","year":"2025","unstructured":"Parray ZA (2025) A review on evolution, structural characteristics, interactions, and regulation of the membrane transport protein: the family of Rab proteins. Int J Biol Macromol 296:139828. https:\/\/doi.org\/10.1016\/j.ijbiomac.2025.139828","journal-title":"Int J Biol Macromol"},{"key":"5057_CR35","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1006\/jmbi.2001.5072","volume":"313","author":"JB Pereira-Leal","year":"2001","unstructured":"Pereira-Leal JB, Seabra MC (2001) Evolution of the rab family of small GTP-binding proteins11Edited by. J Thornton Journal of Molecular Biology 313:889\u2013901. https:\/\/doi.org\/10.1006\/jmbi.2001.5072","journal-title":"J Thornton Journal of Molecular Biology"},{"key":"5057_CR36","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1186\/s12870-023-04151-9","volume":"23","author":"Q Raza","year":"2023","unstructured":"Raza Q, Rashid MAR, Waqas M, Ali Z, Rana IA, Khan SH, Khan IA, Atif RM (2023) Genomic diversity of aquaporins across genus Oryza provides a rich genetic resource for development of climate resilient rice cultivars. BMC Plant Biol 23:172. https:\/\/doi.org\/10.1186\/s12870-023-04151-9","journal-title":"BMC Plant Biol"},{"key":"5057_CR37","doi-asserted-by":"publisher","first-page":"350","DOI":"10.1080\/21541248.2017.1333557","volume":"10","author":"C Rivero","year":"2019","unstructured":"Rivero C, Traubenik S, Zanetti ME, Blanco FA (2019) Small GTPases in plant biotic interactions. Small GTPases 10:350\u2013360. https:\/\/doi.org\/10.1080\/21541248.2017.1333557","journal-title":"Small GTPases"},{"key":"5057_CR38","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1016\/s1369-5266(02)00307-2","volume":"5","author":"S Rutherford","year":"2002","unstructured":"Rutherford S, Moore I (2002) The Arabidopsis Rab GTPase family:another enigma variation. Curr Opin Plant Biol 5:518\u2013528. https:\/\/doi.org\/10.1016\/s1369-5266(02)00307-2","journal-title":"Curr Opin Plant Biol"},{"key":"5057_CR39","doi-asserted-by":"publisher","first-page":"406","DOI":"10.1093\/oxfordjournals.molbev.a040454","volume":"4","author":"N Saitou","year":"1987","unstructured":"Saitou N, Nei M (1987) The neighbor-joining method:a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406\u2013425. https:\/\/doi.org\/10.1093\/oxfordjournals.molbev.a040454","journal-title":"Mol Biol Evol"},{"key":"5057_CR40","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1016\/0092-8674(87)90455-7","volume":"49","author":"A Salminen","year":"1987","unstructured":"Salminen A, Novick PJ (1987) A ras-like protein is required for a post-Golgi event in yeast secretion. Cell 49:527\u2013538. https:\/\/doi.org\/10.1016\/0092-8674(87)90455-7","journal-title":"Cell"},{"key":"5057_CR41","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1016\/0092-8674(86)90597-0","volume":"47","author":"HD Schmitt","year":"1986","unstructured":"Schmitt HD, Wagner P, Pfaff E, Gallwitz D (1986) The ras-related YPT1 gene product in yeast: a GTP-binding protein that might be involved in microtubule organization. Cell 47:401\u2013412. https:\/\/doi.org\/10.1016\/0092-8674(86)90597-0","journal-title":"Cell"},{"key":"5057_CR42","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1016\/j.cj.2022.07.018","volume":"11","author":"MA Shad","year":"2023","unstructured":"Shad MA, Wang Y, Zhang H, Zhai S, Shalmani A, Li Y (2023) Genetic analysis of GEFs and GDIs in rice reveals the roles of OsGEF5, OsGDI1, and OsGEF3 in the regulation of grain size and plant height. Crop J 11:345\u2013360. https:\/\/doi.org\/10.1016\/j.cj.2022.07.018","journal-title":"Crop J"},{"key":"5057_CR43","doi-asserted-by":"publisher","first-page":"14570","DOI":"10.1073\/pnas.95.24.14570","volume":"95","author":"PL Steponkus","year":"1998","unstructured":"Steponkus PL, Uemura M, Joseph RA, Gilmour SJ, Thomashow MF (1998) Mode of action of the COR15a gene on the freezing tolerance of Arabidopsis thaliana. Proc Natl Acad Sci U S A 95:14570\u201314575. https:\/\/doi.org\/10.1073\/pnas.95.24.14570","journal-title":"Proc Natl Acad Sci U S A"},{"key":"5057_CR44","doi-asserted-by":"publisher","first-page":"11030","DOI":"10.1073\/pnas.0404206101","volume":"101","author":"K Tamura","year":"2004","unstructured":"Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030\u201311035. https:\/\/doi.org\/10.1073\/pnas.0404206101","journal-title":"Proc Natl Acad Sci USA"},{"key":"5057_CR45","doi-asserted-by":"publisher","first-page":"3022","DOI":"10.1093\/molbev\/msab120","volume":"38","author":"K Tamura","year":"2021","unstructured":"Tamura K, Stecher G, Kumar S (2021) MEGA11: molecular evolutionary genetics analysis Version 11. Mol Biol Evol 38:3022\u20133027. https:\/\/doi.org\/10.1093\/molbev\/msab120","journal-title":"Mol Biol Evol"},{"key":"5057_CR46","doi-asserted-by":"publisher","first-page":"D1452","DOI":"10.1093\/nar\/gkaa979","volume":"49","author":"MK Tello-Ruiz","year":"2021","unstructured":"Tello-Ruiz MK, Naithani S, Gupta P, Olson A, Wei S, Preece J, Jiao Y, Wang B, Chougule K, Garg P, Elser J, Kumari S, Kumar V, Contreras-Moreira B, Naamati G, George N, Cook J, Bolser D, D\u2019Eustachio P, Stein LD, Gupta A, Xu W, Regala J, Papatheodorou I, Kersey PJ, Flicek P, Taylor C, Jaiswal P, Ware D (2021) Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res 49:D1452\u2013D1463. https:\/\/doi.org\/10.1093\/nar\/gkaa979","journal-title":"Nucleic Acids Res"},{"key":"5057_CR47","doi-asserted-by":"publisher","first-page":"8210","DOI":"10.1073\/pnas.84.23.8210","volume":"84","author":"N Touchot","year":"1987","unstructured":"Touchot N, Chardin P, Tavitian A (1987) Four additional members of the ras gene superfamily isolated by an oligonucleotide strategy: molecular cloning of YPT-related cDNAs from a rat brain library. Proc Natl Acad Sci U S A 84:8210\u20138214. https:\/\/doi.org\/10.1073\/pnas.84.23.8210","journal-title":"Proc Natl Acad Sci U S A"},{"key":"5057_CR48","doi-asserted-by":"publisher","first-page":"26","DOI":"10.2174\/1389202922666210114102743","volume":"22","author":"MK Tripathy","year":"2021","unstructured":"Tripathy MK, Deswal R, Sopory SK (2021) Plant RABs: role in development and in abiotic and biotic stress responses. Curr Genomics 22:26\u201340. https:\/\/doi.org\/10.2174\/1389202922666210114102743","journal-title":"Curr Genomics"},{"key":"5057_CR49","doi-asserted-by":"publisher","first-page":"4730","DOI":"10.1093\/emboj\/20.17.4730","volume":"20","author":"T Ueda","year":"2001","unstructured":"Ueda T, Yamaguchi M, Uchimiya H, Nakano A (2001) Ara6, a plant-unique novel type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana. EMBO J 20:4730\u20134741. https:\/\/doi.org\/10.1093\/emboj\/20.17.4730","journal-title":"EMBO J"},{"key":"5057_CR50","doi-asserted-by":"publisher","DOI":"10.7759\/cureus.57082","volume":"16","author":"B Unat","year":"2024","unstructured":"Unat B (2024) The rat sarcoma virus (RAS) family of proteins in sarcomas. Cureus 16:e57082. https:\/\/doi.org\/10.7759\/cureus.57082","journal-title":"Cureus"},{"key":"5057_CR51","doi-asserted-by":"publisher","first-page":"1191","DOI":"10.1104\/pp.013052","volume":"131","author":"V Vernoud","year":"2003","unstructured":"Vernoud V, Horton AC, Yang Z, Nielsen E (2003) Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol 131:1191\u20131208. https:\/\/doi.org\/10.1104\/pp.013052","journal-title":"Plant Physiol"},{"key":"5057_CR52","doi-asserted-by":"publisher","first-page":"e49","DOI":"10.1093\/nar\/gkr1293","volume":"40","author":"Y Wang","year":"2012","unstructured":"Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH (2012) MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 40:e49. https:\/\/doi.org\/10.1093\/nar\/gkr1293","journal-title":"Nucleic Acids Res"},{"key":"5057_CR53","doi-asserted-by":"publisher","first-page":"98","DOI":"10.1186\/s12284-021-00538-0","volume":"14","author":"D Wang","year":"2021","unstructured":"Wang D, Liu Z, Xiao Y, Liu X, Chen Y, Zhang Z, Kang H, Wang X, Jiang S, Peng S, Tan X, Zhang D, Liu Y, Wang G-L, Li C (2021) Association mapping and functional analysis of rice cold tolerance QTLs at the bud burst stage. Rice 14:98. https:\/\/doi.org\/10.1186\/s12284-021-00538-0","journal-title":"Rice"},{"key":"5057_CR54","doi-asserted-by":"publisher","first-page":"843","DOI":"10.1242\/jcs.01660","volume":"118","author":"K Wennerberg","year":"2005","unstructured":"Wennerberg K, Rossman KL, Der CJ (2005) The Ras superfamily at a glance. J Cell Sci 118:843\u2013846. https:\/\/doi.org\/10.1242\/jcs.01660","journal-title":"J Cell Sci"},{"key":"5057_CR55","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/s0167-4781(02)00410-4","volume":"1577","author":"GP Xue","year":"2002","unstructured":"Xue GP (2002) An AP2 domain transcription factor HvCBF1 activates expression of cold-responsive genes in barley through interaction with a (G\/a)(C\/t)CGAC motif. Biochim Biophys Acta 1577:63\u201372. https:\/\/doi.org\/10.1016\/s0167-4781(02)00410-4","journal-title":"Biochim Biophys Acta"},{"issue":"Suppl","key":"5057_CR56","doi-asserted-by":"publisher","first-page":"S375","DOI":"10.1105\/tpc.001065","volume":"14","author":"Z Yang","year":"2002","unstructured":"Yang Z (2002) Small GTPases: versatile signaling switches in plants. Plant Cell 14(Suppl):S375-388. https:\/\/doi.org\/10.1105\/tpc.001065","journal-title":"Plant Cell"},{"key":"5057_CR57","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1111\/j.1672-9072.2007.00520.x","volume":"49","author":"J Zhang","year":"2007","unstructured":"Zhang J, Hill DR, Sylvester AW (2007) Diversification of the RAB guanosine triphosphatase family in dicots and monocots. J Integr Plant Biol 49:1129\u20131141. https:\/\/doi.org\/10.1111\/j.1672-9072.2007.00520.x","journal-title":"J Integr Plant Biol"},{"key":"5057_CR58","doi-asserted-by":"publisher","first-page":"2744","DOI":"10.1104\/pp.16.00533","volume":"171","author":"C Zhao","year":"2016","unstructured":"Zhao C, Zhang Z, Xie S, Si T, Li Y, Zhu J-K (2016) Mutational evidence for the critical role of CBF transcription factors in cold acclimation in Arabidopsis. Plant Physiol 171:2744\u20132759. https:\/\/doi.org\/10.1104\/pp.16.00533","journal-title":"Plant Physiol"},{"key":"5057_CR59","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1186\/s12915-023-01512-6","volume":"21","author":"X Zheng","year":"2023","unstructured":"Zheng X, Zhong L, Pang H, Wen S, Li F, Lou D, Ge J, Fan W, Wang T, Han Z, Qiao W, Pan X, Zhu Y, Wang J, Tang C, Wang X, Zhang J, Xu Z, Kim SR, Kohli A, Ye G, Olsen KM, Fang W, Yang Q (2023) Lost genome segments associate with trait diversity during rice domestication. BMC Biol 21:20. https:\/\/doi.org\/10.1186\/s12915-023-01512-6","journal-title":"BMC Biol"}],"container-title":["Planta"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00425-026-05057-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00425-026-05057-0","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00425-026-05057-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T14:53:38Z","timestamp":1784645618000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00425-026-05057-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,6,27]]},"references-count":58,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2026,8]]}},"alternative-id":["5057"],"URL":"https:\/\/doi.org\/10.1007\/s00425-026-05057-0","relation":{},"ISSN":["0032-0935","1432-2048"],"issn-type":[{"value":"0032-0935","type":"print"},{"value":"1432-2048","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,6,27]]},"assertion":[{"value":"9 December 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 June 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 June 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"All authors declare that they have no conflicts of interest.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"32"}}