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As a primary event, the early neural plate is patterned by intersecting longitudinal plates and transverse segments, forming a mosaic of progenitor units. The hypothalamus is specified by three prosomeres (hp1, hp2, and the acroterminal domain) of the secondary prosencephalon with corresponding alar and basal plate parts, which develop apart from the diencephalon. Mounting evidence suggests that progenitor units within alar and basal plate parts of hp1 and hp2 give rise to distinct hypothalamic nuclei, which preserve their relative invariant positioning (topology) in the adult brain. Nonetheless, the principles of the prosomeric model have not been applied so far to the hypothalamus of adult primates. We parcellated hypothalamic nuclei in adult rhesus monkeys (<jats:italic>Macaca mulatta<\/jats:italic>) using various stains to view architectonic boundaries. We then analyzed the topological relations of hypothalamic nuclei and adjacent hypothalamic landmarks with homology across rodent and primate species to trace the origin of adult hypothalamic nuclei to the alar or basal plate components of hp1 and hp2. We generated a novel atlas of the hypothalamus of the adult rhesus monkey with developmental ontologies for each hypothalamic nucleus. The result is a systematic reinterpretation of the adult hypothalamus whose prosomeric ontology can be used to study relationships between the hypothalamus and other regions of the CNS. Further, our atlas may serve as a tool to predict causal patterns in physiological and pathological pathways involving the hypothalamus.<\/jats:p>","DOI":"10.1007\/s00429-020-02093-8","type":"journal-article","created":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T09:02:46Z","timestamp":1592384566000},"page":"1777-1803","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":12,"title":["Topological atlas of the hypothalamus in adult rhesus monkey"],"prefix":"10.1007","volume":"225","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4032-673X","authenticated-orcid":false,"given":"Anne Marie","family":"Wells","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0534-5182","authenticated-orcid":false,"given":"Miguel \u00c1ngel","family":"Garc\u00eda-Cabezas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0825-0832","authenticated-orcid":false,"given":"Helen","family":"Barbas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2020,6,16]]},"reference":[{"issue":"13","key":"2093_CR1","doi-asserted-by":"publisher","first-page":"2398","DOI":"10.1523\/JNEUROSCI.2199-18.2019","volume":"39","author":"A Andreu-Cervera","year":"2019","unstructured":"Andreu-Cervera A, Anselme I, Karam A, Laclef C, Catala M, Schneider-Maunoury S (2019) The ciliopathy gene Ftm\/Rpgrip1l controls mouse forebrain patterning via region-specific modulation of hedgehog\/Gli signaling. 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