{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,12,6]],"date-time":"2022-12-06T08:12:14Z","timestamp":1670314334400},"reference-count":38,"publisher":"Springer Science and Business Media LLC","issue":"7","license":[{"start":{"date-parts":[[2015,4,22]],"date-time":"2015-04-22T00:00:00Z","timestamp":1429660800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Parasitol Res"],"published-print":{"date-parts":[[2015,7]]},"DOI":"10.1007\/s00436-015-4475-2","type":"journal-article","created":{"date-parts":[[2015,4,21]],"date-time":"2015-04-21T08:05:36Z","timestamp":1429603536000},"page":"2697-2704","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["A specific indel marker for the Philippines Schistosoma japonicum revealed by analysis of mitochondrial genome sequences"],"prefix":"10.1007","volume":"114","author":[{"given":"Juan","family":"Li","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fen","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hiromu","family":"Sugiyama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Blair","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rui-Qing","family":"Lin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xing-Quan","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,4,22]]},"reference":[{"key":"4475_CR1","doi-asserted-by":"crossref","first-page":"2104","DOI":"10.1093\/bioinformatics\/bti263","volume":"21","author":"F Abascal","year":"2005","unstructured":"Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104\u20132105","journal-title":"Bioinformatics"},{"key":"4475_CR2","doi-asserted-by":"crossref","first-page":"501","DOI":"10.1590\/S0074-02762008000500017","volume":"103","author":"S Beltran","year":"2008","unstructured":"Beltran S, Galinier R, Allienne JF, Boissier J (2008) Cheap, rapid and efficient DNA extraction method to perform multilocus microsatellite genotyping on all Schistosoma mansoni stages. Mem Inst Oswaldo Cruz 103:501\u2013503","journal-title":"Mem Inst Oswaldo Cruz"},{"key":"4475_CR3","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/S0065-308X(10)72005-4","volume":"72","author":"R Bergquist","year":"2010","unstructured":"Bergquist R, Tanner M (2010) Controlling schistosomiasis in Southeast Asia: a tale of two countries. Adv Parasitol 72:109\u2013144","journal-title":"Adv Parasitol"},{"key":"4475_CR4","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1016\/j.parint.2004.01.003","volume":"53","author":"BL Blas","year":"2004","unstructured":"Blas BL, Rosales MI, Lipayon IL, Yasuraoka K, Matsuda H, Hayashi M (2004) The schistosomiasis problem in the Philippines: a review. Parasitol Int 53:127\u2013134","journal-title":"Parasitol Int"},{"key":"4475_CR5","doi-asserted-by":"crossref","first-page":"1767","DOI":"10.1093\/nar\/27.8.1767","volume":"27","author":"JL Boore","year":"1999","unstructured":"Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767\u20131780","journal-title":"Nucleic Acids Res"},{"key":"4475_CR6","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1016\/0001-706X(93)90079-Q","volume":"55","author":"J Bowles","year":"1993","unstructured":"Bowles J, Hope M, Tiu WU, Liu X, McManus DP (1993) Nuclear and mitochondrial genetic markers highly conserved between Chinese and Philippine Schistosoma japonicum. Acta Trop 55:217\u2013229","journal-title":"Acta Trop"},{"key":"4475_CR7","doi-asserted-by":"crossref","first-page":"2010","DOI":"10.3923\/javaa.2011.2010.2015","volume":"10","author":"F Chen","year":"2011","unstructured":"Chen F, Li J, Sugiyama H, Weng YB, Zou FC, Lin RQ, Yuan ZG, Song HQ, Zhu XQ, Zhao GH (2011) Comparative analysis of 18S and 28S rDNA sequences of Schistosoma japonicum from mainland China, the Philippines and Japan. J Anim Vet Adv 10:2010\u20132015","journal-title":"J Anim Vet Adv"},{"key":"4475_CR8","doi-asserted-by":"crossref","first-page":"35","DOI":"10.3109\/19401736.2013.814110","volume":"26","author":"F Chen","year":"2015","unstructured":"Chen F, Li J, Sugiyama H, Zhou DH, Song HQ, Zhao GH, Zhu XQ (2015) Genetic variability among Schistosoma japonicum isolates from the Philippines, Japan and China revealed by sequence analysis of three mitochondrial genes. Mitochondrial DNA 26:35\u201340","journal-title":"Mitochondrial DNA"},{"key":"4475_CR9","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1016\/0020-7519(94)00171-J","volume":"25","author":"NB Chilton","year":"1995","unstructured":"Chilton NB, Gasser RB, Beveridge I (1995) Differences in a ribosomal DNA sequence of morphologically indistinguishable species within the Hypodontus macropi complex (Nematoda: Strongyloidea). Int J Parasitol 25:647\u2013651","journal-title":"Int J Parasitol"},{"key":"4475_CR10","doi-asserted-by":"crossref","first-page":"e4058","DOI":"10.1371\/journal.pone.0004058","volume":"3","author":"DJ Gray","year":"2008","unstructured":"Gray DJ, Williams GM, Li Y, McManus DP (2008) Transmission dynamics of Schistosoma japonicum in the lakes and marshlands of China. PLoS ONE 3:e4058","journal-title":"PLoS ONE"},{"key":"4475_CR11","doi-asserted-by":"crossref","first-page":"1018","DOI":"10.1056\/NEJMra064142","volume":"357","author":"PJ Hotez","year":"2007","unstructured":"Hotez PJ, Molyneux DH, Fenwick A, Kumaresan J, Sachs SE, Sachs JD, Savioli L (2007) Control of neglected tropical diseases. N Engl J Med 357:1018\u20131027","journal-title":"N Engl J Med"},{"key":"4475_CR12","doi-asserted-by":"crossref","first-page":"2339","DOI":"10.1038\/nprot.2007.358","volume":"2","author":"M Hu","year":"2007","unstructured":"Hu M, Jex AR, Campbell BE, Gasser RB (2007) Long PCR amplification of the entire mitochondrial genome from individual helminths for direct sequencing. Nat Protoc 2:2339\u20132344","journal-title":"Nat Protoc"},{"key":"4475_CR13","doi-asserted-by":"crossref","first-page":"1123","DOI":"10.1093\/oxfordjournals.molbev.a026393","volume":"17","author":"TH Le","year":"2000","unstructured":"Le TH, Blair D, Agatsuma T, Humair PF, Campbell NJ, Iwagami M, Littlewood DT, Peacock B, Johnston DA, Bartley J, Rollinson D, Herniou EA, Zarlenga DS, McManus DP (2000) Phylogenies inferred from mitochondrial gene orders\u2014a cautionary tale from the parasitic flatworms. Mol Biol Evol 17:1123\u20131125","journal-title":"Mol Biol Evol"},{"key":"4475_CR14","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1179\/000349802125000268","volume":"96","author":"TH Le","year":"2002","unstructured":"Le TH, Blair D, McManus DP (2002) Revisiting the question of limited genetic variation within Schistosoma japonicum. Ann Trop Med Parasitol 96:155\u2013164","journal-title":"Ann Trop Med Parasitol"},{"key":"4475_CR15","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1016\/j.parint.2008.04.006","volume":"57","author":"LR Leonardo","year":"2008","unstructured":"Leonardo LR, Rivera P, Saniel O, Villacorte E, Crisostomo B, Hernandez L, Baquilod M, Erce E, Martinez R, Velayudhan R (2008) Prevalence survey of schistosomiasis in Mindanao and the Visayas, The Philippines. Parasitol Int 57:246\u2013251","journal-title":"Parasitol Int"},{"key":"4475_CR16","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.1016\/j.meegid.2012.08.005","volume":"12","author":"GH Liu","year":"2012","unstructured":"Liu GH, Wang Y, Xu MJ, Zhou DH, Ye YG, Li JY, Song HQ, Lin RQ, Zhu XQ (2012) Characterization of the complete mitochondrial genomes of two whipworms Trichuris ovis and Trichuris discolor (Nematoda: Trichuridae). Infect Genet Evol 12:1635\u20131641","journal-title":"Infect Genet Evol"},{"key":"4475_CR17","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1007\/s00436-014-4299-5","volume":"114","author":"Z Lv","year":"2015","unstructured":"Lv Z, Wu Z, Zhang L, Ji P, Cai Y, Luo S, Wang H, Li H (2015) Genome mining offers a new starting point for parasitology research. Parasitol Res 114:399\u2013409","journal-title":"Parasitol Res"},{"key":"4475_CR18","doi-asserted-by":"crossref","first-page":"R131","DOI":"10.1093\/hmg\/ddq400","volume":"19","author":"JM Mullaney","year":"2010","unstructured":"Mullaney JM, Mills RE, Pittard WS, Devine SE (2010) Small insertions and deletions (INDELs) in human genomes. Hum Mol Genet 19:R131\u2013R136","journal-title":"Hum Mol Genet"},{"key":"4475_CR19","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1007\/978-1-59745-515-2_27","volume":"396","author":"K Nairz","year":"2007","unstructured":"Nairz K, Zipperlen P, Schneider M (2007) FLP-Mapping: a universal, cost-effective, and automatable method for gene mapping. Methods Mol Biol 396:419\u2013432","journal-title":"Methods Mol Biol"},{"key":"4475_CR20","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.ijid.2013.09.011","volume":"18","author":"DU Olveda","year":"2014","unstructured":"Olveda DU, Li Y, Olveda RM, Lam AK, McManus DP, Chau TN, Harn DA, Williams GM, Gray DJ, Ross AG (2014) Bilharzia in the Philippines: past, present, and future. Int J Infect Dis 18:52\u201356","journal-title":"Int J Infect Dis"},{"key":"4475_CR21","first-page":"357","volume":"12","author":"RD Page","year":"1996","unstructured":"Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357\u2013358","journal-title":"Comput Appl Biosci"},{"key":"4475_CR22","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1093\/bioinformatics\/btg180","volume":"19","author":"F Ronquist","year":"2003","unstructured":"Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572\u20131574","journal-title":"Bioinformatics"},{"key":"4475_CR23","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1038\/nature08140","volume":"460","author":"Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium","year":"2009","unstructured":"Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium (2009) The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature 460:345\u2013351","journal-title":"Nature"},{"key":"4475_CR24","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/S1473-3099(06)70521-7","volume":"6","author":"P Steinmann","year":"2006","unstructured":"Steinmann P, Keiser J, Bos R, Tanner M, Utzinger J (2006) Schistosomiasis and water resources development: systematic review, meta-analysis, and estimates of people at risk. Lancet Infect Dis 6:411\u2013425","journal-title":"Lancet Infect Dis"},{"key":"4475_CR25","doi-asserted-by":"crossref","first-page":"964","DOI":"10.1093\/oxfordjournals.molbev.a025664","volume":"13","author":"K Strimmer","year":"1996","unstructured":"Strimmer K, Von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964\u2013969","journal-title":"Mol Biol Evol"},{"key":"4475_CR26","doi-asserted-by":"crossref","first-page":"811","DOI":"10.1016\/S0020-7519(97)00028-3","volume":"27","author":"H Sugiyama","year":"1997","unstructured":"Sugiyama H, Kawanaka M, Kameoka Y, Nakamura M (1997) A novel cDNA clone of Schistosoma japonicum encoding the 34,000 Dalton eggshell precursor protein. Int J Parasitol 27:811\u2013817","journal-title":"Int J Parasitol"},{"key":"4475_CR27","volume-title":"PAUP*: Phylogenetic Analysis Using Parsimony (and other methods)","author":"DL Swofford","year":"2002","unstructured":"Swofford DL (2002) PAUP*: Phylogenetic Analysis Using Parsimony (and other methods). Sinauer Associates, Sunderland"},{"key":"4475_CR28","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1080\/10635150701472164","volume":"56","author":"G Talavera","year":"2007","unstructured":"Talavera G, Castresana J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56:564\u2013577","journal-title":"Syst Biol"},{"key":"4475_CR29","doi-asserted-by":"crossref","first-page":"1596","DOI":"10.1093\/molbev\/msm092","volume":"24","author":"K Tamura","year":"2007","unstructured":"Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596\u20131599","journal-title":"Mol Biol Evol"},{"key":"4475_CR30","doi-asserted-by":"crossref","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","volume":"24","author":"JD Thompson","year":"1997","unstructured":"Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876\u20134882","journal-title":"Nucleic Acids Res"},{"key":"4475_CR31","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1179\/136485909X384974","volume":"103","author":"W Wang","year":"2009","unstructured":"Wang W, Dai JR, Liang YS, Huang YX, Coles GC (2009) Impact of the South-to-North water diversion project on the transmission of Schistosoma japonicum in China. Ann Trop Med Parasitol 103:17\u201329","journal-title":"Ann Trop Med Parasitol"},{"key":"4475_CR32","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1007\/s00436-014-4225-x","volume":"114","author":"W Wu","year":"2015","unstructured":"Wu W, Feng A, Huang Y (2015) Research and control of advanced schistosomiasis japonica in China. Parasitol Res 114:17\u201327","journal-title":"Parasitol Res"},{"key":"4475_CR33","first-page":"43","volume":"83","author":"C Xianyi","year":"2005","unstructured":"Xianyi C, Liying W, Jiming C, Xiaonong Z, Jiang Z, Jiagang G, Xiaohua W, Engels D, Minggang C (2005) Schistosomiasis control in China: the impact of a 10-year World Bank loan project (1992\u20132001). Bull World Health Organ 83:43\u201348","journal-title":"Bull World Health Organ"},{"key":"4475_CR34","doi-asserted-by":"crossref","first-page":"1401","DOI":"10.1016\/j.ijpara.2007.04.014","volume":"37","author":"MZ Zarowiecki","year":"2007","unstructured":"Zarowiecki MZ, Huyse T, Littlewood DT (2007) Making the most of mitochondrial genomes\u2014markers for phylogeny, molecular ecology and barcodes in Schistosoma (Platyhelminthes: Digenea). Int J Parasitol 37:1401\u20131418","journal-title":"Int J Parasitol"},{"key":"4475_CR35","doi-asserted-by":"crossref","first-page":"1467","DOI":"10.1007\/s00436-012-2981-z","volume":"111","author":"GH Zhao","year":"2012","unstructured":"Zhao GH, Li J, Mo XH, Li XY, Lin RQ, Zou FC, Weng YB, Song HQ, Zhu XQ (2012a) The second transcribed spacer rDNA sequence: an effective genetic marker for inter-species phylogenetic analysis of trematodes in the order Strigeata. Parasitol Res 111:1467\u20131472","journal-title":"Parasitol Res"},{"key":"4475_CR36","doi-asserted-by":"crossref","first-page":"1381","DOI":"10.1016\/j.biotechadv.2012.02.008","volume":"30","author":"GH Zhao","year":"2012","unstructured":"Zhao GH, Li J, Blair D, Li XY, Elsheikha HM, Lin RQ, Zou FC, Zhu XQ (2012b) Biotechnological advances in the diagnosis, species differentiation and phylogenetic analysis of Schistosoma spp. Biotechnol Adv 30:1381\u20131389","journal-title":"Biotechnol Adv"},{"key":"4475_CR37","doi-asserted-by":"crossref","first-page":"1027","DOI":"10.1016\/j.meegid.2012.02.020","volume":"12","author":"GH Zhao","year":"2012","unstructured":"Zhao GH, Li J, Song HQ, Li XY, Chen F, Lin RQ, Yuan ZG, Weng YB, Hu M, Zou FC, Zhu XQ (2012c) A specific PCR assay for the identification and differentiation of Schistosoma japonicum geographical isolates in mainland China based on analysis of mitochondrial genome sequences. Infect Genet Evol 12:1027\u20131036","journal-title":"Infect Genet Evol"},{"key":"4475_CR38","doi-asserted-by":"crossref","first-page":"83","DOI":"10.4269\/ajtmh.2011.10-0574","volume":"85","author":"YB Zhou","year":"2011","unstructured":"Zhou YB, Liang S, Chen GX, Rea C, He ZG, Zhang ZJ, Wei JG, Zhao GM, Jiang QW (2011) An integrated strategy for transmission control of Schistosoma japonicum in a marshland area of China: findings from a five-year longitudinal survey and mathematical modeling. Am J Trop Med Hyg 85:83\u201388","journal-title":"Am J Trop Med Hyg"}],"container-title":["Parasitology Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00436-015-4475-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00436-015-4475-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00436-015-4475-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,28]],"date-time":"2019-05-28T23:07:18Z","timestamp":1559084838000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00436-015-4475-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,4,22]]},"references-count":38,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2015,7]]}},"alternative-id":["4475"],"URL":"https:\/\/doi.org\/10.1007\/s00436-015-4475-2","relation":{},"ISSN":["0932-0113","1432-1955"],"issn-type":[{"value":"0932-0113","type":"print"},{"value":"1432-1955","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,4,22]]}}}