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Here, we applied a combination of non-invasive sampling, necropsy examinations, and molecular diagnostics to assess the endoparasite infections fauna of in wild and captive populations of these three deer species. We analyzed a total of 140 samples and found eleven taxa parasitizing these hosts, including two trematodes (<jats:italic>Paramphistomum<\/jats:italic> sp., an unidentified trematode), one anoplocephalid cestode, six nematodes (<jats:italic>Strongyloides<\/jats:italic> sp., two morphotypes of strongylid eggs, <jats:italic>Mammomonogamus<\/jats:italic> sp., <jats:italic>Setaria<\/jats:italic> sp. and an unidentified ascarid), and two protozoans (<jats:italic>Giardia intestinalis<\/jats:italic> and unidentified ciliates). The Yucatan brocket deer showed the highest percentage of infected samples (39.2%), followed by the white-tailed deer (38.7%). For the red brocket deer, only two samples were positive to two parasite taxa (20%). Captive populations showed the lowest parasite richness and percentage of infection. Some of the parasites reported here can pose potential risk for the health of deer populations, and along with habitat loss and poaching, could jeopardize the persistence of deer in the area. This study adds to the knowledge gap on the parasitic fauna in wild populations of these culturally and ecologically important species, particularly for the Yucatan brocket deer for which parasitological information is very scarce, and highlights the necessity to keep monitoring the health status of deer in this area.\n<\/jats:p>","DOI":"10.1007\/s00436-025-08518-9","type":"journal-article","created":{"date-parts":[[2025,6,29]],"date-time":"2025-06-29T23:38:00Z","timestamp":1751240280000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Study of parasitic fauna of three species of deer occurring in southeastern Mexico"],"prefix":"10.1007","volume":"124","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6367-477X","authenticated-orcid":false,"given":"Brenda Sol\u00f3rzano","family":"Garc\u00eda","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6472-5113","authenticated-orcid":false,"given":"Gerardo P\u00e9rez Ponce","family":"de Le\u00f3n","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2025,6,30]]},"reference":[{"key":"8518_CR1","doi-asserted-by":"publisher","unstructured":"Agossou M, Jean-Baptiste S, Ehret N, et al. 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All sampling was carried out after informed consent from the landowners and ejidal authorities.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval"}},{"value":"The authors declare no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"72"}}