{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T03:38:02Z","timestamp":1791257882224,"version":"4.1.0"},"reference-count":74,"publisher":"Springer Science and Business Media LLC","issue":"6","license":[{"start":{"date-parts":[[2015,5,16]],"date-time":"2015-05-16T00:00:00Z","timestamp":1431734400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","award":["386654"],"award-info":[{"award-number":["386654"]}],"id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","award":["238880"],"award-info":[{"award-number":["238880"]}],"id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000196","name":"Canada Foundation for Innovation","doi-asserted-by":"publisher","award":["28591"],"award-info":[{"award-number":["28591"]}],"id":[{"id":"10.13039\/501100000196","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Genet Genomics"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1007\/s00438-015-1062-2","type":"journal-article","created":{"date-parts":[[2015,5,15]],"date-time":"2015-05-15T11:05:43Z","timestamp":1431687943000},"page":"2075-2088","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":33,"title":["Inheritance of Pantoea type III secretion systems through both vertical and horizontal transfer"],"prefix":"10.1007","volume":"290","author":[{"given":"Morgan W. B.","family":"Kirzinger","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cory J.","family":"Butz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John","family":"Stavrinides","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2015,5,16]]},"reference":[{"issue":"18","key":"1062_CR1","doi-asserted-by":"crossref","first-page":"5655","DOI":"10.1128\/jb.179.18.5655-5662.1997","volume":"179","author":"JR Alfano","year":"1997","unstructured":"Alfano JR, Collmer A (1997) The type III (Hrp) secretion pathway of plant pathogenic bacteria: trafficking harpins, Avr proteins, and death. J Bacteriol 179(18):5655\u20135662","journal-title":"J Bacteriol"},{"key":"1062_CR2","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1146\/annurev.phyto.42.040103.110731","volume":"42","author":"JR Alfano","year":"2004","unstructured":"Alfano JR, Collmer A (2004) Type III secretion system effector proteins: double agents in bacterial disease and plant defense. Annu Rev Phytopathol 42:385\u2013414","journal-title":"Annu Rev Phytopathol"},{"issue":"9","key":"1062_CR3","doi-asserted-by":"publisher","first-page":"4856","DOI":"10.1073\/pnas.97.9.4856","volume":"97","author":"JR Alfano","year":"2000","unstructured":"Alfano JR, Charkowski AO, Deng WL, Badel JL, Petnicki-Ocwieja T, van Dijk K, Collmer A (2000) The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proc Natl Acad Sci 97(9):4856\u20134861","journal-title":"Proc Natl Acad Sci"},{"issue":"6","key":"1062_CR4","doi-asserted-by":"publisher","first-page":"500","DOI":"10.1159\/000151575","volume":"17","author":"NY Aly","year":"2008","unstructured":"Aly NY, Salmeen HN, Lila RA, Nagaraja PA (2008) Pantoea agglomerans bloodstream infection in preterm neonates. Med Princ Pract 17(6):500\u2013503","journal-title":"Med Princ Pract"},{"issue":"10","key":"1062_CR5","doi-asserted-by":"crossref","first-page":"3740","DOI":"10.1128\/AEM.64.10.3740-3747.1998","volume":"64","author":"N Amellal","year":"1998","unstructured":"Amellal N, Burtin G, Bartoli F, Heulin T (1998) Colonization of wheat roots by an exopolysaccharide-producing Pantoea agglomerans strain and its effect on rhizosphere soil aggregation. Appl Environ Microbiol 64(10):3740\u20133747","journal-title":"Appl Environ Microbiol"},{"issue":"2","key":"1062_CR6","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1094\/MPMI-19-0099","volume":"19","author":"JL Badel","year":"2006","unstructured":"Badel JL, Shimizu R, Oh HS, Collmer A (2006) A Pseudomonas syringae pv. tomato avrE1\/hopM1 mutant is severely reduced in growth and lesion formation in tomato. Mol Plant Microbe Interact 19(2):99\u2013111","journal-title":"Mol Plant Microbe Interact"},{"issue":"2","key":"1062_CR7","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1590\/S1413-86702007000200023","volume":"11","author":"EL Bicudo","year":"2007","unstructured":"Bicudo EL, Macedo VO, Carrara MA, Castro FF, Rage RI (2007) Nosocomial outbreak of Pantoea agglomerans in a pediatric urgent care center. Braz J Infect Dis 11(2):281\u2013284","journal-title":"Braz J Infect Dis"},{"issue":"1","key":"1062_CR8","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1094\/MPMI-19-0016","volume":"19","author":"T Boureau","year":"2006","unstructured":"Boureau T, ElMaarouf-Bouteau H, Garnier A, Brisset MN, Perino C, Pucheu I, Barny MA (2006) DspA\/E, a type III effector essential for Erwinia amylovora pathogenicity and growth in planta, induces cell death in host apple and nonhost tobacco plants. Mol Plant Microbe Interact 19(1):16\u201324","journal-title":"Mol Plant Microbe Interact"},{"issue":"6\u20138","key":"1062_CR9","doi-asserted-by":"publisher","first-page":"447","DOI":"10.1016\/j.syapm.2008.09.004","volume":"31","author":"C Brady","year":"2008","unstructured":"Brady C, Cleenwerck I, Venter S, Vancanneyt M, Swings J, Coutinho T (2008) Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA). Syst Appl Microbiol 31(6\u20138):447\u2013460","journal-title":"Syst Appl Microbiol"},{"key":"1062_CR10","doi-asserted-by":"publisher","first-page":"484","DOI":"10.1099\/ijs.0.012070-0","volume":"60","author":"CL Brady","year":"2010","unstructured":"Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TA (2010) Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov and Tatumella terrea comb. nov and description of Tatumella morbirosei sp nov. Int J Syst Evol Microbiol 60:484\u2013494","journal-title":"Int J Syst Evol Microbiol"},{"issue":"2","key":"1062_CR11","doi-asserted-by":"publisher","first-page":"262","DOI":"10.1128\/MMBR.05017-11","volume":"76","author":"D Buttner","year":"2012","unstructured":"Buttner D (2012) Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria. Microbiol and Mol Biol Rev 76(2):262\u2013310","journal-title":"Microbiol and Mol Biol Rev"},{"issue":"2","key":"1062_CR12","doi-asserted-by":"publisher","first-page":"198","DOI":"10.1094\/MPMI-23-2-0198","volume":"23","author":"CR Clarke","year":"2010","unstructured":"Clarke CR, Cai R, Studholme DJ, Guttman DS, Vinatzer BA (2010) Pseudomonas syringae strains naturally lacking the classical P. syringae hrp\/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact 23(2):198\u2013210","journal-title":"Mol Plant Microbe Interact"},{"issue":"3","key":"1062_CR13","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1083\/jcb.200205077","volume":"158","author":"GR Cornelis","year":"2002","unstructured":"Cornelis GR (2002) Yersinia type III secretion: send in the effectors. J Cell Biol 158(3):401\u2013408","journal-title":"J Cell Biol"},{"issue":"11","key":"1062_CR14","doi-asserted-by":"publisher","first-page":"811","DOI":"10.1038\/nrmicro1526","volume":"4","author":"GR Cornelis","year":"2006","unstructured":"Cornelis GR (2006) The type III secretion injectisome. Nat Rev Microbiol 4(11):811\u2013825","journal-title":"Nat Rev Microbiol"},{"issue":"17","key":"1062_CR15","doi-asserted-by":"publisher","first-page":"6327","DOI":"10.1128\/AEM.00892-12","volume":"78","author":"VR Correa","year":"2012","unstructured":"Correa VR, Majerczak DR, Ammar E-D, Merighi M, Pratt RC, Hogenhout SA, Coplin DL, Redinbaugh MG (2012) The bacterium Pantoea stewartii uses two different type III secretion systems to colonize its plant host and insect vector. Appl Environ Microbiol 78(17):6327\u20136336","journal-title":"Appl Environ Microbiol"},{"issue":"6","key":"1062_CR16","doi-asserted-by":"publisher","first-page":"1989","DOI":"10.1128\/JCM.00632-07","volume":"45","author":"AT Cruz","year":"2007","unstructured":"Cruz AT, Cazacu AC, Allen CH (2007) Pantoea agglomerans, a plant pathogen causing human disease. J Clin Microbiol 45(6):1989\u20131992","journal-title":"J Clin Microbiol"},{"issue":"4","key":"1062_CR17","doi-asserted-by":"publisher","first-page":"1883","DOI":"10.1073\/pnas.98.4.1883","volume":"98","author":"C Dale","year":"2001","unstructured":"Dale C, Young SA, Haydon DT, Welburn SC (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proc Natl Acad Sci 98(4):1883\u20131888","journal-title":"Proc Natl Acad Sci"},{"issue":"3","key":"1062_CR18","doi-asserted-by":"publisher","first-page":"758","DOI":"10.1093\/molbev\/msi061","volume":"22","author":"C Dale","year":"2005","unstructured":"Dale C, Jones T, Pontes M (2005) Degenerative evolution and functional diversification of type-III secretion systems in the insect endosymbiont Sodalis glossinidius. Mol Biol Evol 22(3):758\u2013766","journal-title":"Mol Biol Evol"},{"issue":"1","key":"1062_CR19","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1128\/JCM.38.1.460-461.2000","volume":"38","author":"C Champs De","year":"2000","unstructured":"De Champs C, Le Seaux S, Dubost JJ, Boisgard S, Sauvezie B, Sirot J (2000) Isolation of Pantoea agglomerans in two cases of septic monoarthritis after plant thorn and wood sliver injuries. J Clin Microbiol 38(1):460\u2013461","journal-title":"J Clin Microbiol"},{"key":"1062_CR20","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-625","author":"P Maayer De","year":"2012","unstructured":"De Maayer P, Chan W, Blom J, Venter S, Duffy B, Smits T, Coutinho T (2012) The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. BMC Genom. doi: 10.1186\/1471-2164-13-625","journal-title":"BMC Genom"},{"issue":"26","key":"1062_CR21","doi-asserted-by":"publisher","first-page":"9927","DOI":"10.1073\/pnas.0401601101","volume":"101","author":"S DebRoy","year":"2004","unstructured":"DebRoy S, Thilmony R, Kwack YB, Nomura K, He SY (2004) A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants. Proc Natl Acad Sci 101(26):9927\u20139932","journal-title":"Proc Natl Acad Sci"},{"issue":"7","key":"1062_CR22","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.1038\/ismej.2011.202","volume":"6","author":"MD Diallo","year":"2012","unstructured":"Diallo MD, Monteil CL, Vinatzer BA, Clarke CR, Glaux C, Guilbaud C, Desbiez C, Morris CE (2012) Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic. ISME J 6(7):1325\u20131335","journal-title":"ISME J"},{"issue":"1","key":"1062_CR23","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1186\/1471-2180-9-3","volume":"9","author":"Y Dieye","year":"2009","unstructured":"Dieye Y, Ameiss K, Mellata M, Curtiss R (2009) The Salmonella Pathogenicity Island (SPI) 1 contributes more than SPI2 to the colonization of the chicken by Salmonella enterica serovar Typhimurium. BMC Microbiol 9(1):3","journal-title":"BMC Microbiol"},{"issue":"2","key":"1062_CR24","doi-asserted-by":"publisher","first-page":"220","DOI":"10.1111\/j.1574-6968.2007.00677.x","volume":"270","author":"J Duan","year":"2007","unstructured":"Duan J, Yi T, Lu Z, Shen D, Feng Y (2007) Rice endophyte Pantoea agglomerans YS19 forms multicellular symplasmata via cell aggregation. FEMS Microbiol Lett 270(2):220\u2013226","journal-title":"FEMS Microbiol Lett"},{"issue":"12","key":"1062_CR25","doi-asserted-by":"publisher","first-page":"3138","DOI":"10.1007\/s11999-008-0482-2","volume":"466","author":"JF Duerinckx","year":"2008","unstructured":"Duerinckx JF (2008) Case report: subacute synovitis of the knee after a rose thorn injury: unusual clinical picture. Clin Orthop Relat Res 466(12):3138\u20133142","journal-title":"Clin Orthop Relat Res"},{"issue":"5","key":"1062_CR26","doi-asserted-by":"publisher","first-page":"788","DOI":"10.1001\/archinte.1978.03630290076024","volume":"138","author":"FE Flatauer","year":"1978","unstructured":"Flatauer FE, Khan MA (1978) Septic arthritis caused by Enterobacter agglomerans. Arch Intern Med 138(5):788","journal-title":"Arch Intern Med"},{"issue":"1","key":"1062_CR27","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1128\/IAI.71.1.242-253.2003","volume":"71","author":"B Foultier","year":"2003","unstructured":"Foultier B, Troisfontaines P, Vertommen D, Marenne MN, Rider M, Parsot C, Cornelis GR (2003) Identification of substrates and chaperone from the Yersinia enterocolitica 1B Ysa type III secretion system. Infect Immun 71(1):242\u2013253","journal-title":"Infect Immun"},{"issue":"10","key":"1062_CR28","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.1094\/MPMI.2001.14.10.1213","volume":"14","author":"RD Frederick","year":"2001","unstructured":"Frederick RD, Ahmad M, Majerczak DR, Arroyo-Rodriguez AS, Manulis S, Coplin DL (2001) Genetic organization of the Pantoea stewartii subsp. stewartii hrp gene cluster and sequence analysis of the hrpA, hrpC, hrpN, and wtsE operons. Mol Plant Microbe Interact 14(10):1213\u20131222","journal-title":"Mol Plant Microbe Interact"},{"issue":"5418","key":"1062_CR29","doi-asserted-by":"publisher","first-page":"1322","DOI":"10.1126\/science.284.5418.1322","volume":"284","author":"J Galan","year":"1999","unstructured":"Galan J, Collmer A (1999) Type III secretion machines: bacterial devices for protein delivery into host cells. Science 284(5418):1322\u20131328","journal-title":"Science"},{"issue":"5","key":"1062_CR30","doi-asserted-by":"publisher","first-page":"1057","DOI":"10.1046\/j.1365-2958.1997.6442015.x","volume":"26","author":"S Gaudriault","year":"1997","unstructured":"Gaudriault S, Malandrin L, Paulin JP, Barny MA (1997) DspA, an essential pathogenicity factor of Erwinia amylovora showing homology with AvrE of Pseudomonas syringae, is secreted via the Hrp secretion pathway in a DspB-dependent way. Mol Microbiol 26(5):1057\u20131069","journal-title":"Mol Microbiol"},{"issue":"3","key":"1062_CR31","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1099\/00207713-39-3-337","volume":"39","author":"F Gavini","year":"1989","unstructured":"Gavini F, Mergaert J, Beji A, Mielcarek C, Izard D, Kersters K, De Ley J (1989) Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and Description of Pantoea dispersa sp. nov. Int J Sys Bacteriol 39(3):337\u2013345","journal-title":"Int J Sys Bacteriol"},{"issue":"9","key":"1062_CR32","doi-asserted-by":"publisher","first-page":"1096","DOI":"10.1094\/PDIS.1997.81.9.1096C","volume":"81","author":"R Gitaitis","year":"1997","unstructured":"Gitaitis R, Gay J (1997) First report of a leaf blight, seed stalk rot, and bulb decay of onion by Pantoea ananas in Georgia. Plant Dis 81(9):1096","journal-title":"Plant Dis"},{"issue":"10","key":"1062_CR33","doi-asserted-by":"publisher","first-page":"1092","DOI":"10.1094\/MPMI-19-1092","volume":"19","author":"JH Ham","year":"2006","unstructured":"Ham JH, Majerczak DR, Arroyo-Rodriguez AS, Mackey DM, Coplin DL (2006) WtsE, an AvrE-family effector protein from Pantoea stewartii subsp. stewartii, causes disease-associated cell death in corn and requires a chaperone protein for stability. Mol Plant Microbe Interact 19(10):1092\u20131102","journal-title":"Mol Plant Microbe Interact"},{"issue":"5","key":"1062_CR34","doi-asserted-by":"publisher","first-page":"633","DOI":"10.1111\/j.1364-3703.2008.00489.x","volume":"9","author":"JH Ham","year":"2008","unstructured":"Ham JH, Majerczak D, Ewert S, Sreerekha MV, Mackey D, Coplin D (2008) WtsE, an AvrE-family type III effector protein of Pantoea stewartii subsp. stewartii, causes cell death in non-host plants. Mol. Plant Pathol 9(5):633\u2013643","journal-title":"Plant Pathol"},{"issue":"5","key":"1062_CR35","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1046\/j.1365-2958.2000.01935.x","volume":"36","author":"M Hensel","year":"2000","unstructured":"Hensel M (2000) Salmonella pathogenicity island 2. Mol Microbiol 36(5):1015\u20131023","journal-title":"Mol Microbiol"},{"issue":"2","key":"1062_CR36","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1128\/MMBR.62.2.379-433.1998","volume":"62","author":"CJ Hueck","year":"1998","unstructured":"Hueck CJ (1998) Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiol Mol Biol Rev 62(2):379\u2013433","journal-title":"Microbiol Mol Biol Rev"},{"key":"1062_CR37","doi-asserted-by":"publisher","first-page":"844","DOI":"10.1099\/ijs.0.024406-0","volume":"61","author":"MRH Hurst","year":"2011","unstructured":"Hurst MRH, Becher SA, Young SD, Nelson TL, Glare TR (2011) Yersinia entomophaga sp. nov., isolated from the New Zealand grass grub Costelytra zealandica. Int J Sys Evol Microbiol 61:844\u2013849","journal-title":"Int J Sys Evol Microbiol"},{"issue":"4","key":"1062_CR38","doi-asserted-by":"publisher","first-page":"302","DOI":"10.1007\/s10327-008-0107-3","volume":"74","author":"K Kido","year":"2008","unstructured":"Kido K, Adachi R, Hasegawa M, Yano K, Hikichi Y, Takeuchi S, Atsuchi T, Takikawa Y (2008) Internal fruit rot of netted melon caused by Pantoea ananatis (Erwinia ananas) in Japan. J Gen Plant Pathol 74(4):302\u2013312","journal-title":"J Gen Plant Pathol"},{"issue":"2","key":"1062_CR39","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1016\/j.tim.2011.11.006","volume":"20","author":"MWB Kirzinger","year":"2012","unstructured":"Kirzinger MWB, Stavrinides J (2012) Host specificity determinants as a genetic continuum. Trends Microbiol 20(2):88\u201393","journal-title":"Trends Microbiol"},{"issue":"4","key":"1062_CR40","doi-asserted-by":"publisher","first-page":"980","DOI":"10.3390\/genes2040980","volume":"2","author":"MWB Kirzinger","year":"2011","unstructured":"Kirzinger MWB, Nadarasah G, Stavrinides J (2011) Insights into cross-kingdom plant pathogenic bacteria. Genes 2(4):980\u2013997","journal-title":"Genes"},{"issue":"3","key":"1062_CR41","doi-asserted-by":"publisher","first-page":"117","DOI":"10.7883\/yoken1952.37.117","volume":"37","author":"Y Kosako","year":"1984","unstructured":"Kosako Y, Sakazaki R, Yoshizaki E (1984) Yokenella regensburgei gen nov, sp-nov\u2014a new genus and species in the family Enterobacteriaceae. Jpn J Med Sci Biol 37(3):117\u2013124","journal-title":"Jpn J Med Sci Biol"},{"issue":"6","key":"1062_CR42","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1136\/adc.88.6.542","volume":"88","author":"A Kratz","year":"2003","unstructured":"Kratz A, Greenberg D, Barki Y, Cohen E, Lifshitz M (2003) Pantoea agglomerans as a cause of septic arthritis after palm tree thorn injury; case report and literature review. Arch Dis Child 88(6):542\u2013544","journal-title":"Arch Dis Child"},{"issue":"4","key":"1062_CR43","doi-asserted-by":"crossref","first-page":"290","DOI":"10.7883\/yoken.63.290","volume":"63","author":"KM Lalas","year":"2010","unstructured":"Lalas KM, Erichsen D (2010) Sporadic Pantoea agglomerans bacteremia in a near-term female: case report and review of literature. Jpn J Infect Dis 63(4):290\u2013291","journal-title":"Jpn J Infect Dis"},{"issue":"4","key":"1062_CR44","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1007\/PL00006158","volume":"44","author":"JG Lawrence","year":"1997","unstructured":"Lawrence JG, Ochman H (1997) Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 44(4):383\u2013397","journal-title":"J Mol Evol"},{"issue":"4","key":"1062_CR45","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1094\/MPMI-18-0275","volume":"18","author":"M Lindeberg","year":"2005","unstructured":"Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS (2005) Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen Pseudomonas syringae. Mol Plant Microbe Interact 18(4):275\u2013282","journal-title":"Mol Plant Microbe Interact"},{"issue":"5","key":"1062_CR46","doi-asserted-by":"publisher","first-page":"485","DOI":"10.1007\/s15010-011-0139-z","volume":"39","author":"YC Lo","year":"2011","unstructured":"Lo YC, Chuang YW, Lin YH (2011) Yokenella regensburgei in an immunocompromised host: a case report and review of the literature. Infection 39(5):485\u2013488","journal-title":"Infection"},{"issue":"14\u201315","key":"1062_CR47","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1016\/S1286-4579(01)01488-5","volume":"3","author":"CP Lostroh","year":"2001","unstructured":"Lostroh CP, Lee CA (2001) The Salmonella pathogenicity island-1 type III secretion system. Microbes Infect 3(14\u201315):1281\u20131291","journal-title":"Microbes Infect"},{"issue":"12","key":"1062_CR48","doi-asserted-by":"publisher","first-page":"2131","DOI":"10.1371\/journal.pgen.0020209","volume":"2","author":"W Ma","year":"2006","unstructured":"Ma W, Dong FFT, Stavrinides J, Guttman DS (2006) Type III effector diversification via both pathoadaptation and horizontal transfer in response to a coevolutionary arms race. PLoS Genet 2(12):2131\u20132142","journal-title":"PLoS Genet"},{"issue":"5","key":"1062_CR49","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1046\/j.1364-3703.2003.00178.x","volume":"4","author":"S Manulis","year":"2003","unstructured":"Manulis S, Barash I (2003) Pantoea agglomerans pvs. gypsophilae and betae, recently evolved pathogens? Mol Plant Pathol 4(5):307\u2013314","journal-title":"Mol Plant Pathol"},{"issue":"4","key":"1062_CR50","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1016\/S1369-5266(00)00182-5","volume":"4","author":"C Marie","year":"2001","unstructured":"Marie C, Broughton WJ, Deakin WJ (2001) Rhizobium type III secretion systems: legume charmers or alarmers? Curr Opin Plant Biol 4(4):336\u2013342","journal-title":"Curr Opin Plant Biol"},{"key":"1062_CR51","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1146\/annurev.arplant.56.032604.144218","volume":"56","author":"MB Mudgett","year":"2005","unstructured":"Mudgett MB (2005) New insights to the function of phytopathogenic bacterial type III effectors in plants. Annu Rev Plant Biol 56:509\u2013531","journal-title":"Annu Rev Plant Biol"},{"key":"1062_CR52","doi-asserted-by":"publisher","first-page":"602","DOI":"10.1099\/mic.0.073452-0","volume":"160","author":"G Nadarasah","year":"2014","unstructured":"Nadarasah G, Stavrinides J (2014) Quantitative evaluation of the host colonizing capabilities of the enteric bacterium, Pantoea, using plant and insect hosts. Microbiol 160:602\u2013615","journal-title":"Microbiol"},{"issue":"5","key":"1062_CR53","doi-asserted-by":"publisher","first-page":"1118","DOI":"10.1111\/j.1365-2958.2006.05301.x","volume":"61","author":"G Nissan","year":"2006","unstructured":"Nissan G, Manulis-Sasson S, Weinthal D, Mor H, Sessa G, Barash I (2006) The type III effectors HsvG and HsvB of gall-forming Pantoea agglomerans determine host specificity and function as transcriptional activators. Mol Microbiol 61(5):1118\u20131131","journal-title":"Mol Microbiol"},{"issue":"1","key":"1062_CR54","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1128\/CMR.10.1.35","volume":"10","author":"RD Perry","year":"1997","unstructured":"Perry RD, Fetherston JD (1997) Yersinia pestis\u2014etiologic agent of plague. Clin Microbiol Rev 10(1):35\u201366","journal-title":"Clin Microbiol Rev"},{"key":"1062_CR55","doi-asserted-by":"publisher","first-page":"204","DOI":"10.1186\/1471-2180-9-204","volume":"9","author":"F Rezzonico","year":"2009","unstructured":"Rezzonico F, Smits TH, Montesinos E, Frey JE, Duffy B (2009) Genotypic comparison of Pantoea agglomerans plant and clinical strains. BMC Microbiol 9:204","journal-title":"BMC Microbiol"},{"issue":"47","key":"1062_CR56","doi-asserted-by":"publisher","first-page":"16624","DOI":"10.1073\/pnas.0407383101","volume":"101","author":"JA Roden","year":"2004","unstructured":"Roden JA, Belt B, Ross JB, Tachibana T, Vargas J, Mudgett MB (2004) A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection. Proc Natl Acad Sci 101(47):16624\u201316629","journal-title":"Proc Natl Acad Sci"},{"issue":"4","key":"1062_CR57","doi-asserted-by":"publisher","first-page":"1999","DOI":"10.1128\/AEM.70.4.1999-2012.2004","volume":"70","author":"SF Sarkar","year":"2004","unstructured":"Sarkar SF, Guttman DS (2004) Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70(4):1999\u20132012","journal-title":"Appl Environ Microbiol"},{"issue":"5","key":"1062_CR58","doi-asserted-by":"publisher","first-page":"627","DOI":"10.1007\/PL00006584","volume":"49","author":"H Sawada","year":"1999","unstructured":"Sawada H, Suzuki F, Matsuda I, Saitou N (1999) Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. J Mol Evol 49(5):627\u2013644","journal-title":"J Mol Evol"},{"issue":"3","key":"1062_CR59","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1093\/nar\/15.3.1281","volume":"15","author":"PM Sharp","year":"1987","unstructured":"Sharp PM, Li WH (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucl Acids Res 15(3):1281\u20131295","journal-title":"Nucl Acids Res"},{"issue":"6","key":"1062_CR60","doi-asserted-by":"publisher","first-page":"e00902","DOI":"10.1128\/genomeA.00902-13","volume":"1","author":"DDN Smith","year":"2013","unstructured":"Smith DDN, Kirzinger MWB, Stavrinides J (2013a) Draft genome sequence of the antibiotic-producing epiphytic isolate Pantoea ananatis BRT175. Genome Announc 1(6):e00902-13. doi: 10.1128\/genomeA.00902-13","journal-title":"Genome Announc"},{"issue":"5","key":"1062_CR61","doi-asserted-by":"publisher","first-page":"e00904","DOI":"10.1128\/genomeA.00904-13","volume":"1","author":"DDN Smith","year":"2013","unstructured":"Smith DDN, Kirzinger MWB, Stavrinides J (2013b) Draft genome sequence of the antibiotic-producing cystic fibrosis isolate Pantoea agglomerans Tx10. Genome Announc 1(5):e00904-13. doi: 10.1128\/genomeA.00904-13","journal-title":"Genome Announc"},{"key":"1062_CR62","unstructured":"Stavrinides J (2009) Origin and evolution of phytopathogenic bacteria. In: Jackson RW (ed) Plant pathogenic bacteria: genomics and molecular biology. Caister Academic Press, pp 1\u201335"},{"issue":"2","key":"1062_CR63","first-page":"285","volume":"10","author":"J Stavrinides","year":"2008","unstructured":"Stavrinides J, McCann HC, Guttman DS (2008) Host-pathogen interplay and the evolution of bacterial effectors. Cell Microbiol 10(2):285\u2013292","journal-title":"Cell Microbiol"},{"issue":"1","key":"1062_CR64","doi-asserted-by":"publisher","first-page":"147","DOI":"10.1111\/j.1462-2920.2009.02056.x","volume":"12","author":"J Stavrinides","year":"2010","unstructured":"Stavrinides J, No A, Ochman H (2010) A single genetic locus in the phytopathogen Pantoea stewartii enables gut colonization and pathogenicity in an insect host. Environ Microbiol 12(1):147\u2013155","journal-title":"Environ Microbiol"},{"issue":"3","key":"1062_CR65","first-page":"197","volume":"1","author":"M Suarez","year":"1998","unstructured":"Suarez M, Russmann H (1998) Molecular mechanisms of Salmonella invasion: the type III secretion system of the pathogenicity island 1. Int Microbiol 1(3):197\u2013204","journal-title":"Int Microbiol"},{"issue":"4","key":"1062_CR66","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1016\/S1286-4579(00)00335-X","volume":"2","author":"A Subtil","year":"2000","unstructured":"Subtil A, Blocker A, Dautry-Varsat A (2000) Type III secretion system in Chlamydia species: identified members and candidates. Microbes Infect 2(4):367\u2013369","journal-title":"Microbes Infect"},{"issue":"10","key":"1062_CR67","doi-asserted-by":"publisher","first-page":"2731","DOI":"10.1093\/molbev\/msr121","volume":"28","author":"K Tamura","year":"2011","unstructured":"Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28(10):2731\u20132739","journal-title":"Mol Biol Evol"},{"issue":"23","key":"1062_CR68","doi-asserted-by":"publisher","first-page":"6793","DOI":"10.1093\/emboj\/18.23.6793","volume":"18","author":"F Tardy","year":"1999","unstructured":"Tardy F, Homble F, Neyt C, Wattiez R, Cornelis GR, Ruysschaert JM, Cabiaux V (1999) Yersinia enterocolitica type III secretion-translocation system: channel formation by secreted Yops. EMBO J 18(23):6793\u20136799","journal-title":"EMBO J"},{"issue":"22","key":"1062_CR69","doi-asserted-by":"publisher","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","volume":"22","author":"JD Thompson","year":"1994","unstructured":"Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673\u20134680","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"1062_CR70","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1101\/gr.4106106","volume":"16","author":"H Toh","year":"2006","unstructured":"Toh H, Weiss BL, Perkin SA, Yamashita A, Oshima K, Hattori M, Aksoy S (2006) Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host. Genome Res 16(2):149\u2013156","journal-title":"Genome Res"},{"key":"1062_CR71","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1152\/physiol.00011.2005","volume":"20","author":"P Troisfontaines","year":"2005","unstructured":"Troisfontaines P, Cornelis GR (2005) Type III secretion: more systems than you think. Physiol 20:326\u2013339","journal-title":"Physiol"},{"issue":"6","key":"1062_CR72","doi-asserted-by":"publisher","first-page":"1381","DOI":"10.1046\/j.1365-2958.1998.00920.x","volume":"28","author":"V Viprey","year":"1998","unstructured":"Viprey V, Del Greco A, Golinowski W, Broughton WJ, Perret X (1998) Symbiotic implications of type III protein secretion machinery in Rhizobium. Mol Microbiol 28(6):1381\u20131389","journal-title":"Mol Microbiol"},{"issue":"6","key":"1062_CR73","doi-asserted-by":"publisher","first-page":"1381","DOI":"10.1016\/j.meegid.2009.09.016","volume":"9","author":"B Volksch","year":"2009","unstructured":"Volksch B, Thon S, Jacobsen ID, Gube M (2009) Polyphasic study of plant- and clinic-associated Pantoea agglomerans strains reveals indistinguishable virulence potential. Infect Genet Evol 9(6):1381\u20131391","journal-title":"Infect Genet Evol"},{"issue":"5","key":"1062_CR74","doi-asserted-by":"publisher","first-page":"e96208","DOI":"10.1371\/journal.pone.0096208","volume":"9","author":"AM Walterson","year":"2014","unstructured":"Walterson AM, Smith DDN, Stavrinides J (2014) Identification of a Pantoea biosynthetic cluster that directs the synthesis of an antimicrobial natural product. PLoS ONE 9(5):e96208\u2013e96208","journal-title":"PLoS ONE"}],"container-title":["Molecular Genetics and Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-015-1062-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00438-015-1062-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-015-1062-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-015-1062-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,8]],"date-time":"2022-05-08T06:07:22Z","timestamp":1651990042000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00438-015-1062-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,5,16]]},"references-count":74,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["1062"],"URL":"https:\/\/doi.org\/10.1007\/s00438-015-1062-2","relation":{},"ISSN":["1617-4615","1617-4623"],"issn-type":[{"value":"1617-4615","type":"print"},{"value":"1617-4623","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,5,16]]},"assertion":[{"value":"22 December 2014","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 May 2015","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 May 2015","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}