{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,28]],"date-time":"2026-10-28T05:19:45Z","timestamp":1793164785814,"version":"4.5.0"},"reference-count":47,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2020,4,19]],"date-time":"2020-04-19T00:00:00Z","timestamp":1587254400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2020,4,19]],"date-time":"2020-04-19T00:00:00Z","timestamp":1587254400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["CEECIND\/01304\/2017"],"award-info":[{"award-number":["CEECIND\/01304\/2017"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["SFRH\/BD\/132046\/2017"],"award-info":[{"award-number":["SFRH\/BD\/132046\/2017"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["UID\/AMB\/50017\/2019"],"award-info":[{"award-number":["UID\/AMB\/50017\/2019"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Genet Genomics"],"published-print":{"date-parts":[[2020,7]]},"DOI":"10.1007\/s00438-020-01676-8","type":"journal-article","created":{"date-parts":[[2020,4,19]],"date-time":"2020-04-19T15:02:41Z","timestamp":1587308561000},"page":"1001-1012","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":12,"title":["Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity"],"prefix":"10.1007","volume":"295","author":[{"given":"Pedro","family":"Teixeira","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7965-4928","authenticated-orcid":false,"given":"Marta","family":"Tac\u00e3o","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rafael A.","family":"Bara\u00fana","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Artur","family":"Silva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Isabel","family":"Henriques","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2020,4,19]]},"reference":[{"key":"1676_CR1","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1186\/1471-2164-12-402","volume":"12","author":"NF Alikhan","year":"2011","unstructured":"Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402. https:\/\/doi.org\/10.1186\/1471-2164-12-402","journal-title":"BMC Genomics"},{"key":"1676_CR2","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1038\/ismej.2008.86","volume":"3","author":"HK Allen","year":"2009","unstructured":"Allen HK, Moe LA, Rodbumrer J, Gaarder A, Handelsman J (2009) Functional metagenomics reveals diverse eta-lactamases in a remote Alaskan soil. ISME J 3:243\u2013251. https:\/\/doi.org\/10.1038\/ismej.2008.86","journal-title":"ISME J"},{"key":"1676_CR3","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1093\/nar\/gkw387","volume":"44","author":"D Arndt","year":"2016","unstructured":"Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS (2016) PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:16\u201321. https:\/\/doi.org\/10.1093\/nar\/gkw387","journal-title":"Nucleic Acids Res"},{"key":"1676_CR4","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1186\/1471-2164-9-75","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. https:\/\/doi.org\/10.1186\/1471-2164-9-75","journal-title":"BMC Genomics"},{"key":"1676_CR5","doi-asserted-by":"publisher","first-page":"4207","DOI":"10.1093\/nar\/gkq140","volume":"38","author":"RK Aziz","year":"2010","unstructured":"Aziz RK, Breitbart M, Edwards RA (2010) Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 38:4207\u20134217. https:\/\/doi.org\/10.1093\/nar\/gkq140","journal-title":"Nucleic Acids Res"},{"key":"1676_CR6","unstructured":"Babraham Bioinformatics, 2016. FastQC: a quality control tool for high throughput sequence data. URL https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/. Accessed 24 Apr 2016"},{"key":"1676_CR7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2018.02756","volume":"9","author":"KCM Barroso","year":"2018","unstructured":"Barroso KCM, Previato-Mello M, Batista BB, Batista JH, Da Silva Neto JF (2018) EmrR-dependent upregulation of the efflux pump EmrCAB contributes to antibiotic resistance in Chromobacterium violaceum. Front Microbiol 9:1\u201312. https:\/\/doi.org\/10.3389\/fmicb.2018.02756","journal-title":"Front Microbiol"},{"key":"1676_CR8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2017.02213","volume":"8","author":"JH Batista","year":"2017","unstructured":"Batista JH, Jos\u00e9 F, Neto S (2017) Chromobacterium violaceum pathogenicity: updates and insights from genome sequencing of novel Chromobacterium species. Front Microbiol 8:1\u20137. https:\/\/doi.org\/10.3389\/fmicb.2017.02213","journal-title":"Front Microbiol"},{"key":"1676_CR9","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2334-13-4","volume":"13","author":"JI Campbell","year":"2013","unstructured":"Campbell JI, Phu N, Lan H, Qui PT, Dung LT, Farrar JJ, Baker S (2013) A successful antimicrobial regime for Chromobacterium violaceum induced bacteremia. BMC Infect Dis 13:1\u20133. https:\/\/doi.org\/10.1186\/1471-2334-13-4","journal-title":"BMC Infect Dis"},{"key":"1676_CR10","doi-asserted-by":"publisher","first-page":"694","DOI":"10.1093\/nar\/gkv1239","volume":"44","author":"L Chen","year":"2016","unstructured":"Chen L, Zheng D, Liu B, Yang J, Jin Q (2016) VFDB 2016: hierarchical and refined dataset for big data analysis\u201310 years on. Nucleic Acids Res 44:694\u2013697. https:\/\/doi.org\/10.1093\/nar\/gkv1239","journal-title":"Nucleic Acids Res"},{"key":"1676_CR11","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1099\/ijsem.0.002516","volume":"68","author":"J Chun","year":"2018","unstructured":"Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, da Costa MS, Rooney AP, Yi H, Xu XW, De Meyer S, Trujillo ME (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461\u2013466. https:\/\/doi.org\/10.1099\/ijsem.0.002516","journal-title":"Int J Syst Evol Microbiol"},{"key":"1676_CR12","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1038\/nrmicro.2017.20","volume":"15","author":"W Deng","year":"2017","unstructured":"Deng W, Marshall NC, Rowland JL, McCoy JM, Worrall LJ, Santos AS, Strynadka NCJ, Finlay BB (2017) Assembly, structure, function and regulation of type III secretion systems. Nat Rev Microbiol 15:323\u2013337. https:\/\/doi.org\/10.1038\/nrmicro.2017.20","journal-title":"Nat Rev Microbiol"},{"key":"1676_CR13","doi-asserted-by":"publisher","first-page":"414","DOI":"10.1038\/nrmicro884","volume":"2","author":"U Dobrindt","year":"2004","unstructured":"Dobrindt U, Hochhut B, Hentschel U, Hacker J (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2:414\u2013424. https:\/\/doi.org\/10.1038\/nrmicro884","journal-title":"Nat Rev Microbiol"},{"key":"1676_CR14","first-page":"201","volume":"27","author":"N Dur\u00e1n","year":"2001","unstructured":"Dur\u00e1n N, Menck CFM (2001) Chromobacterium violaceum: a review of pharmacological and industiral perspectives. Clin Rev Microbiol 27:201\u2013222","journal-title":"Clin Rev Microbiol"},{"key":"1676_CR15","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1038\/nature09523","volume":"468","author":"JE Garneau","year":"2010","unstructured":"Garneau JE, Dupuis M\u00c8, Villion M, Romero DA, Barrangou R, Boyaval P, Fremaux C, Horvath P, Magad\u00e1n AH, Moineau S (2010) The CRISPR\/cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468:67\u201371. https:\/\/doi.org\/10.1038\/nature09523","journal-title":"Nature"},{"key":"1676_CR16","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1093\/nar\/gkn228","volume":"35","author":"I Grissa","year":"2007","unstructured":"Grissa I, Vergnaud G, Pourcel C (2007) CRISPRFinder: a web tool to identify clustered regularly interspace short palindromic repeats. Nucleic Acids Res 35:52\u201357. https:\/\/doi.org\/10.1093\/nar\/gkn228","journal-title":"Nucleic Acids Res"},{"key":"1676_CR17","doi-asserted-by":"publisher","first-page":"1493","DOI":"10.1093\/jac\/dkw020","volume":"71","author":"DD Gudeta","year":"2016","unstructured":"Gudeta DD, Bortolaia V, Jayol A, Poirel L, Nordmann P, Guardabassi L (2016) Chromobacterium spp. harbour Ambler class A beta-lactamases showing high identity with KPC. J Antimicrob Chemother 71:1493\u20131496. https:\/\/doi.org\/10.1093\/jac\/dkw020","journal-title":"J Antimicrob Chemother"},{"key":"1676_CR18","doi-asserted-by":"publisher","first-page":"1398","DOI":"10.1099\/ijs.0.64681-0","volume":"58","author":"XY Han","year":"2008","unstructured":"Han XY, Han FS, Segal J (2008) Chromobacterium haemolyticum sp. nov., a strongly haemolytic species. Int J Syst Evol Microbiol 58:1398\u20131403. https:\/\/doi.org\/10.1099\/ijs.0.64681-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"1676_CR19","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1016\/j.diagmicrobio.2016.05.021","volume":"86","author":"N Harmon","year":"2016","unstructured":"Harmon N, Mortensen JE, Robinette E, Powell EA (2016) Pediatric bacteremia caused by Chromobacterium haemolyticum\/ Chromobacterium aquaticum. Diagn Microbiol Infect Dis 86:108\u2013111. https:\/\/doi.org\/10.1016\/j.diagmicrobio.2016.05.021","journal-title":"Diagn Microbiol Infect Dis"},{"key":"1676_CR20","doi-asserted-by":"publisher","first-page":"566","DOI":"10.1093\/nar\/gkw1004","volume":"45","author":"B Jia","year":"2017","unstructured":"Jia B, Raphenya AR, Alcock B, Waglechner N, Guo P, Tsang KK, Lago BA, Dave BM, Pereira S, Sharma AN, Doshi S, Courtot M, Lo R, Williams LE, Frye JG, Elsayegh T, Sardar D, Westman EL, Pawlowski AC, Johnson TA, Brinkman FSL, Wright GD, McArthur AG (2017) CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Res 45:566\u2013573. https:\/\/doi.org\/10.1093\/nar\/gkw1004","journal-title":"Nucleic Acids Res"},{"key":"1676_CR21","doi-asserted-by":"publisher","first-page":"376","DOI":"10.1111\/j.1574-6976.2008.00136.x","volume":"33","author":"M Juhas","year":"2009","unstructured":"Juhas M, Van Der Meer JR, Gaillard M, Harding RM, Hood DW, Crook DW (2009) Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev 33:376\u2013393. https:\/\/doi.org\/10.1111\/j.1574-6976.2008.00136.x","journal-title":"FEMS Microbiol Rev"},{"issue":"4","key":"1676_CR46","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1128\/AAC.49.4.1639-1641.2005","volume":"49","author":"KE Keith","year":"2005","unstructured":"Keith KE, Oyston PC, Crossett B, Fairweather NF, Titball RW, Walsh TR, Brown KA (2005) Functional characterization of OXA-57, a class D beta-lactamase from Burkholderia pseudomallei. Antimicrob Agents Chemother 49(4):1639\u20131641. https:\/\/doi.org\/10.1128\/AAC.49.4.1639-1641.2005","journal-title":"Antimicrob Agents Chemother"},{"key":"1676_CR22","doi-asserted-by":"publisher","first-page":"3100","DOI":"10.1093\/nar\/gkm160","volume":"35","author":"K Lagesen","year":"2007","unstructured":"Lagesen K, Hallin P, Rodland EA, Staerfeldt H-H, Rognes T, Ussery DW (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100\u20133108. https:\/\/doi.org\/10.1093\/nar\/gkm160","journal-title":"Nucleic Acids Res"},{"key":"1676_CR23","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2180-7-58","volume":"7","author":"CI Lima-Bittencourt","year":"2007","unstructured":"Lima-Bittencourt CI, Astolfi-filho S, Chartone- E, Santos FR, Nascimento AMA (2007) Analysis of Chromobacterium sp. natural isolates from different Brazilian ecosystems. BMC Microbiol 7:1\u20139. https:\/\/doi.org\/10.1186\/1471-2180-7-58","journal-title":"BMC Microbiol"},{"key":"1676_CR24","doi-asserted-by":"publisher","first-page":"642","DOI":"10.1111\/j.1472-765X.2011.03052.x","volume":"52","author":"CI Lima-Bittencourt","year":"2011","unstructured":"Lima-Bittencourt CI, Costa PS, Barbosa FAR, Chartone-Souza E, Nascimento AMA (2011) Characterization of a Chromobacterium haemolyticum population from a natural tropical lake. Lett Appl Microbiol 52:642\u2013650. https:\/\/doi.org\/10.1111\/j.1472-765X.2011.03052.x","journal-title":"Lett Appl Microbiol"},{"key":"1676_CR25","doi-asserted-by":"publisher","first-page":"955","DOI":"10.1093\/nar\/25.5.955","volume":"25","author":"TM Lowe","year":"1997","unstructured":"Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955\u2013964. https:\/\/doi.org\/10.1093\/nar\/25.5.955","journal-title":"Nucleic Acids Res"},{"key":"1676_CR26","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-60","author":"JP Meier-Kolthoff","year":"2013","unstructured":"Meier-Kolthoff JP, Auch AF, Klenk HP, G\u00f6ker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform. https:\/\/doi.org\/10.1186\/1471-2105-14-60","journal-title":"BMC Bioinform"},{"key":"1676_CR27","doi-asserted-by":"publisher","first-page":"352","DOI":"10.1099\/ijs.0.056994-0","volume":"64","author":"JP Meier-Kolthoff","year":"2014","unstructured":"Meier-Kolthoff JP, Klenk HP, G\u00f6ker M (2014) Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. Int J Syst Evol Microbiol 64:352\u2013356. https:\/\/doi.org\/10.1099\/ijs.0.056994-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"1676_CR28","doi-asserted-by":"publisher","first-page":"e01047","DOI":"10.1128\/genomeA.01047-14.Copyright","volume":"2","author":"T Miki","year":"2014","unstructured":"Miki T, Okada N (2014) Draft genome sequence of Chromobacterium haemolyticum causing human bacteremia infection in Japan. Genome Announc 2:e01047\u2013e1114. https:\/\/doi.org\/10.1128\/genomeA.01047-14.Copyright","journal-title":"Genome Announc"},{"key":"1676_CR29","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2334-13-406","volume":"13","author":"M Okada","year":"2013","unstructured":"Okada M, Inokuchi R, Shinohara K, Matsumoto A, Ono Y, Narita M (2013) Chromobacterium haemolyticum-induced bacteremia in a healthy young man. BMC Infect Dis 13:1\u20134","journal-title":"BMC Infect Dis"},{"key":"1676_CR30","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0178154","volume":"12","author":"Y Pantoja","year":"2017","unstructured":"Pantoja Y, Pinheiro K, Veras A, Ara\u00fajo F, De Sousa AL, Guimar\u00e3es LC, Silva A, Ramos RTJ (2017) PanWeb: a web interface for pan-genomic analysis. PLoS ONE 12:1\u20139. https:\/\/doi.org\/10.1371\/journal.pone.0178154","journal-title":"PLoS ONE"},{"key":"1676_CR31","doi-asserted-by":"publisher","first-page":"1135","DOI":"10.1007\/s00203-018-1526-y","volume":"200","author":"K Priya","year":"2018","unstructured":"Priya K, Sulaiman J, How KY, Yin WF, Chan KG (2018) Production of N-acyl homoserine lactones by Chromobacterium haemolyticum KM2 isolated from the river water in Malaysia. Arch Microbiol 200:1135\u20131142. https:\/\/doi.org\/10.1007\/s00203-018-1526-y","journal-title":"Arch Microbiol"},{"key":"1676_CR32","doi-asserted-by":"publisher","first-page":"929","DOI":"10.1093\/bioinformatics\/btv681","volume":"32","author":"M Richter","year":"2015","unstructured":"Richter M, Rossell\u00f3-M\u00f3ra R, Oliver Gl\u00f6ckner F, Peplies J (2015) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929\u2013931. https:\/\/doi.org\/10.1093\/bioinformatics\/btv681","journal-title":"Bioinformatics"},{"key":"1676_CR33","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1016\/j.nmni.2015.06.005","volume":"7","author":"L Rouli","year":"2015","unstructured":"Rouli L, Merhej V, Fournier PE, Raoult D (2015) The bacterial pangenome as a new tool for analysing pathogenic bacteria. New Microbes New Infect 7:72\u201385. https:\/\/doi.org\/10.1016\/j.nmni.2015.06.005","journal-title":"New Microbes New Infect"},{"key":"1676_CR34","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","volume":"16","author":"K Rutherford","year":"2000","unstructured":"Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B (2000) Artemis: sequence visualization and annotation. Bioinformatics 16:944\u2013945. https:\/\/doi.org\/10.1093\/bioinformatics\/16.10.944","journal-title":"Bioinformatics"},{"key":"1676_CR35","doi-asserted-by":"publisher","first-page":"D32","DOI":"10.1093\/nar\/gkj014","volume":"34","author":"P Siguier","year":"2006","unstructured":"Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M (2006) ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res 34:D32\u2013D36. https:\/\/doi.org\/10.1093\/nar\/gkj014","journal-title":"Nucleic Acids Res"},{"key":"1676_CR36","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1016\/j.jbiotec.2015.09.008","volume":"232","author":"SC Soares","year":"2016","unstructured":"Soares SC, Geyik H, Ramos RTJ, de S\u00e1 PHCG, Barbosa EGV, Baumbach J, Figueiredo HCP, Miyoshi A, Tauch A, Silva A, Azevedo V (2016) GIPSy: genomic island prediction software. J Biotechnol 232:2\u201311. https:\/\/doi.org\/10.1016\/j.jbiotec.2015.09.008","journal-title":"J Biotechnol"},{"key":"1676_CR37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1089\/mdr.2015.0072","volume":"21","author":"M Tac\u00e3o","year":"2015","unstructured":"Tac\u00e3o M, Correia A, Henriques I (2015) Low prevalence of carbapenem-resistant bacteria in river water: resistance is mostly related to intrinsic mechanisms. Microb Drug Resist 21:1\u201310. https:\/\/doi.org\/10.1089\/mdr.2015.0072","journal-title":"Microb Drug Resist"},{"key":"1676_CR38","doi-asserted-by":"publisher","first-page":"526","DOI":"10.7883\/yoken.JJID.2014.285","volume":"68","author":"R Takenaka","year":"2015","unstructured":"Takenaka R, Nureki S, Ueno T, Shigemitsu O (2015) Chromobacterium haemolyticum pneumonia possibly due to the aspiration of runoff water. Jpn J Infect Dis 68:526\u2013529. https:\/\/doi.org\/10.7883\/yoken.JJID.2014.285","journal-title":"Jpn J Infect Dis"},{"key":"1676_CR39","doi-asserted-by":"publisher","first-page":"615","DOI":"10.1111\/ped.12301","volume":"56","author":"P Tanpowpong","year":"2014","unstructured":"Tanpowpong P, Charoenmuang R, Apiwattanakul N (2014) First pediatric case of Chromobacterium haemolyticum causing proctocolitis. Pediatr Int 56:615\u2013617. https:\/\/doi.org\/10.1111\/ped.12301","journal-title":"Pediatr Int"},{"key":"1676_CR40","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1093\/nar\/gkw330","volume":"44","author":"D Veltri","year":"2016","unstructured":"Veltri D, Wight MM, Crouch JA (2016) SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species. Nucleic Acids Res 44:41\u201345. https:\/\/doi.org\/10.1093\/nar\/gkw330","journal-title":"Nucleic Acids Res"},{"key":"1676_CR41","doi-asserted-by":"publisher","first-page":"535","DOI":"10.1093\/nar\/gkw1017","volume":"45","author":"AR Wattam","year":"2017","unstructured":"Wattam AR, Davis JJ, Assaf R, Boisvert S, Brettin T, Bun C, Conrad N, Dietrich EM, Disz T, Gabbard JL, Gerdes S, Henry CS, Kenyon RW, Machi D, Mao C, Nordberg EK, Olsen GJ, Murphy-Olson DE, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Vonstein V, Warren A, Xia F, Yoo H, Stevens RL (2017) Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center. Nucleic Acids Res 45:535\u2013542. https:\/\/doi.org\/10.1093\/nar\/gkw1017","journal-title":"Nucleic Acids Res"},{"key":"1676_CR42","doi-asserted-by":"publisher","first-page":"736","DOI":"10.1111\/j.1574-6976.2011.00268.x","volume":"35","author":"N Woodford","year":"2011","unstructured":"Woodford N, Turton JF, Livermore DM (2011) Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiol Rev 35:736\u2013755. https:\/\/doi.org\/10.1111\/j.1574-6976.2011.00268.x","journal-title":"FEMS Microbiol Rev"},{"issue":"2","key":"1676_CR47","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1016\/j.diagmicrobio.2004.02.004","volume":"49","author":"LT Wu","year":"2004","unstructured":"Wu LT, Tsou MF, Wu HJ, Chen HE, Chuang YC, Yu WL (2004). Survey of CTX-M-3 extended-spectrum beta-lactamase (ESBL) among cefotaximeresistant Serratia marcescens at a medical center in middle Taiwan. Diagn Microbiol Infect Dis 49(2):125\u2013129","journal-title":"Diagn Microbiol Infect Dis"},{"key":"1676_CR43","doi-asserted-by":"publisher","first-page":"435","DOI":"10.1016\/j.jcma.2011.08.013","volume":"74","author":"C Yang","year":"2011","unstructured":"Yang C, Li Y (2011) Chromobacterium violaceum infection: a clinical review of an important but neglected infection. J Chin Med Assoc 74:435\u2013441. https:\/\/doi.org\/10.1016\/j.jcma.2011.08.013","journal-title":"J Chin Med Assoc"},{"key":"1676_CR44","doi-asserted-by":"publisher","first-page":"1151","DOI":"10.1128\/AAC.45.4.1151-1161.2001","volume":"45","author":"H Yigit","year":"2001","unstructured":"Yigit H, Queenan AM, Anderson GJ, Domenech-Sanchez A, Biddle JW, Steward CD, Alberti S, Bush K, Tenover FC (2001) Novel carbapenem-hydrolyzing beta-lactamase, KPC-1, from a carbapenem-resistant strain of Klebsiella pneumoniae. Antimicrob Agents Chemother 45:1151\u20131161. https:\/\/doi.org\/10.1128\/AAC.45.4.1151-1161.2001","journal-title":"Antimicrob Agents Chemother"},{"key":"1676_CR45","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1007\/s10482-017-0844-4","volume":"110","author":"SH Yoon","year":"2017","unstructured":"Yoon SH, Sung-Min H, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281\u20131286. https:\/\/doi.org\/10.1007\/s10482-017-0844-4","journal-title":"Antonie Van Leeuwenhoek"}],"container-title":["Molecular Genetics and Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-020-01676-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00438-020-01676-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-020-01676-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,18]],"date-time":"2021-04-18T23:12:58Z","timestamp":1618787578000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00438-020-01676-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,4,19]]},"references-count":47,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2020,7]]}},"alternative-id":["1676"],"URL":"https:\/\/doi.org\/10.1007\/s00438-020-01676-8","relation":{},"ISSN":["1617-4615","1617-4623"],"issn-type":[{"value":"1617-4615","type":"print"},{"value":"1617-4623","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,4,19]]},"assertion":[{"value":"5 June 2019","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"2 April 2020","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 April 2020","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}