{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,23]],"date-time":"2026-07-23T10:55:12Z","timestamp":1784804112876,"version":"3.55.0"},"reference-count":78,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T00:00:00Z","timestamp":1729641600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T00:00:00Z","timestamp":1729641600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"name":"Department of Biotechnology, Ramalingaswami re-entry Fellowship","award":["102. IFD\/SAN\/2549\/2019-20 Dated 29-10-2019"],"award-info":[{"award-number":["102. IFD\/SAN\/2549\/2019-20 Dated 29-10-2019"]}]},{"DOI":"10.13039\/501100001411","name":"Indian Council of Medical Research","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001411","id-type":"DOI","asserted-by":"publisher"}]},{"name":"MAHE Ignition Grant\/ Seed Money to Early Career Researcher"},{"name":"Indian Council of Medical Research (ICMR) Extramural Ad-hoc"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Genet Genomics"],"published-print":{"date-parts":[[2024,12]]},"DOI":"10.1007\/s00438-024-02188-5","type":"journal-article","created":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T15:02:19Z","timestamp":1729695739000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Virulome and phylogenomic profiling of a novel Burkholderia pseudomallei strain from an Indian clinical isolate"],"prefix":"10.1007","volume":"299","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-0176-6239","authenticated-orcid":false,"given":"M. R.","family":"Varshith","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6773-1113","authenticated-orcid":false,"given":"Ranita","family":"Ghosh Dastidar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0009-5038-1546","authenticated-orcid":false,"given":"M. S.","family":"Shrilaxmi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0337-0619","authenticated-orcid":false,"given":"Rajarshi","family":"Bhattacharya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8561-1155","authenticated-orcid":false,"given":"S.","family":"Jha","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9245-3239","authenticated-orcid":false,"given":"S.","family":"Choudhary","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-6926-553X","authenticated-orcid":false,"given":"E.","family":"Varny","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-1693-4409","authenticated-orcid":false,"given":"R. A.","family":"Carvalho","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6270-5837","authenticated-orcid":false,"given":"L.","family":"John","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6309-8031","authenticated-orcid":false,"given":"V.","family":"Sundaramoorthy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2894-2433","authenticated-orcid":false,"given":"C. M.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6815-0097","authenticated-orcid":false,"given":"R. R.","family":"Damerla","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9885-2735","authenticated-orcid":false,"given":"R. H.","family":"Herai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3013-2138","authenticated-orcid":false,"given":"S. R.","family":"Biswas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6955-6790","authenticated-orcid":false,"given":"P. B.","family":"Lal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chiranjay","family":"Mukhopadhyay","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4123-1801","authenticated-orcid":false,"given":"Somasish","family":"Ghosh Dastidar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,10,23]]},"reference":[{"key":"2188_CR1","doi-asserted-by":"publisher","first-page":"170","DOI":"10.3389\/fmicb.2011.00170","volume":"2","author":"EM Allwood","year":"2011","unstructured":"Allwood EM, Devenish RJ, Prescott M, Adler B, Boyce JD (2011) Strategies for Intracellular Survival of Burkholderia pseudomallei. Front Microbiol 2:170. https:\/\/doi.org\/10.3389\/fmicb.2011.00170","journal-title":"Front Microbiol"},{"key":"2188_CR2","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1016\/j.jprot.2014.04.005","volume":"106","author":"AR Al-Maleki","year":"2014","unstructured":"Al-Maleki AR, Mariappan V, Vellasamy KM, Shankar EM, Tay ST, Vadivelu J (2014) Enhanced intracellular survival and epithelial cell adherence abilities of Burkholderia pseudomallei morphotypes are dependent on differential expression of virulence-associated proteins during mid-logarithmic growth phase. J Proteomics 106:205\u2013220. https:\/\/doi.org\/10.1016\/j.jprot.2014.04.005","journal-title":"J Proteomics"},{"issue":"7","key":"2188_CR3","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0270499","volume":"17","author":"S Appelt","year":"2022","unstructured":"Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022) Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS ONE 17(7):e0270499. https:\/\/doi.org\/10.1371\/journal.pone.0270499","journal-title":"PLoS ONE"},{"issue":"7","key":"2188_CR4","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1099\/0022-1317-51-7-539","volume":"51","author":"T Atkins","year":"2002","unstructured":"Atkins T, Prior R, Mack K, Russell P, Nelson M, Prior J, Ellis J, Oyston PCF, Dougan G, Titball RW (2002) Characterisation of an acapsular mutant of Burkholderia pseudomallei identified by signature tagged mutagenesis. J Med Microbiol 51(7):539\u2013553. https:\/\/doi.org\/10.1099\/0022-1317-51-7-539","journal-title":"J Med Microbiol"},{"key":"2188_CR5","doi-asserted-by":"publisher","unstructured":"Bartpho T, Wongsurawat T, Wongratanacheewin S, Talaat AM, Karoonuthaisiri N, Sermswan RW (2012) Genomic islands as a marker to differentiate between clinical and environmental Burkholderia pseudomallei. PloS  one 7(6):e37762. https:\/\/doi.org\/10.1371\/journal.pone.0037762","DOI":"10.1371\/journal.pone.0037762"},{"issue":"13","key":"2188_CR6","doi-asserted-by":"publisher","first-page":"2161","DOI":"10.1093\/bioinformatics\/bty095","volume":"34","author":"C Bertelli","year":"2018","unstructured":"Bertelli C, Brinkman FSL (2018) Improved genomic island predictions with IslandPath-DIMOB. Bioinformatics (Oxford, England) 34(13):2161\u20132167. https:\/\/doi.org\/10.1093\/bioinformatics\/bty095","journal-title":"Bioinformatics (Oxford, England)"},{"issue":"6","key":"2188_CR7","doi-asserted-by":"publisher","first-page":"1246","DOI":"10.3201\/eid2806.211526","volume":"28","author":"P Bhaskaran","year":"2019","unstructured":"Bhaskaran P, Prasad V, Gopinathan A, Shaw T, Sivadas S, Jayakumar C, Chowdhury S, Dravid A, Mukhopadhyay C (2019) Kumar A (2022) Burkholderia pseudomallei in Environment of Adolescent Siblings with Melioidosis, Kerala, India. Emerg Infect Dis 28(6):1246\u20131249. https:\/\/doi.org\/10.3201\/eid2806.211526","journal-title":"Emerg Infect Dis"},{"issue":"8","key":"2188_CR8","doi-asserted-by":"publisher","first-page":"892","DOI":"10.1016\/s1473-3099(19)30157-4","volume":"19","author":"E Birnie","year":"2019","unstructured":"Birnie E, Virk HS, Savelkoel J, Spijker R, Bertherat E, Dance DAB, Limmathurotsakul D, Devleesschauwer B, Haagsma JA, Wiersinga WJ (2019) Global burden of melioidosis in 2015: a systematic review and data synthesis. Lancet Infect Dis 19(8):892\u2013902. https:\/\/doi.org\/10.1016\/s1473-3099(19)30157-4","journal-title":"Lancet Infect Dis"},{"issue":"2","key":"2188_CR9","doi-asserted-by":"publisher","first-page":"514","DOI":"10.1111\/j.1462-5822.2006.00807.x","volume":"9","author":"JA Boddey","year":"2007","unstructured":"Boddey JA, Day CJ, Flegg CP, Ulrich RL, Stephens SR, Beacham IR, Morrison NA, Peak IR (2007) The bacterial gene lfpA influences the potent induction of calcitonin receptor and osteoclast-related genes in Burkholderia pseudomallei-induced TRAP-positive multinucleated giant cells. Cell Microbiol 9(2):514\u2013531. https:\/\/doi.org\/10.1111\/j.1462-5822.2006.00807.x","journal-title":"Cell Microbiol"},{"issue":"6","key":"2188_CR10","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1046\/j.1462-5822.2003.00277.x","volume":"5","author":"K Breitbach","year":"2003","unstructured":"Breitbach K, Rottner K, Klocke S, Rohde M, Jenzora A, Wehland J, Steinmetz I (2003) Actin-based motility of Burkholderia pseudomallei involves the Arp 2\/3 complex, but not N-WASP and Ena\/VASP proteins. Cell Microbiol 5(6):385\u2013393. https:\/\/doi.org\/10.1046\/j.1462-5822.2003.00277.x","journal-title":"Cell Microbiol"},{"key":"2188_CR11","doi-asserted-by":"publisher","unstructured":"Brenner D, Staley J, Krieg N (2006) Bergey\u2019s Manual\u00ae of Systematic Bacteriology. In, vol 2. pp 27\u201332. https:\/\/doi.org\/10.1007\/0-387-28021-9_4","DOI":"10.1007\/0-387-28021-9_4"},{"key":"2188_CR12","doi-asserted-by":"publisher","unstructured":"Burtnick MN, Brett PJ (2013) Burkholderia mallei and Burkholderia pseudomallei cluster 1 type VI secretion system gene expression is negatively regulated by iron and zinc. PloS one 8(10):e76767. https:\/\/doi.org\/10.1371\/journal.pone.0076767","DOI":"10.1371\/journal.pone.0076767"},{"issue":"1","key":"2188_CR13","doi-asserted-by":"publisher","first-page":"1945","DOI":"10.1080\/21505594.2022.2139063","volume":"13","author":"NM Bzdyl","year":"2022","unstructured":"Bzdyl NM, Moran CL, Bendo J, Sarkar-Tyson M (2022) Pathogenicity and virulence of Burkholderia pseudomallei. Virulence 13(1):1945\u20131965. https:\/\/doi.org\/10.1080\/21505594.2022.2139063","journal-title":"Virulence"},{"issue":"3","key":"2188_CR14","doi-asserted-by":"publisher","first-page":"807","DOI":"10.1128\/jb.01258-06","volume":"189","author":"N Chantratita","year":"2007","unstructured":"Chantratita N, Wuthiekanun V, Boonbumrung K, Tiyawisutsri R, Vesaratchavest M, Limmathurotsakul D, Chierakul W, Wongratanacheewin S, Pukritiyakamee S, White NJ, Day NP, Peacock SJ (2007) Biological relevance of colony morphology and phenotypic switching by Burkholderia pseudomallei. J Bacteriol 189(3):807\u2013817. https:\/\/doi.org\/10.1128\/jb.01258-06","journal-title":"J Bacteriol"},{"issue":"Database issue","key":"2188_CR15","doi-asserted-by":"publisher","first-page":"D325","DOI":"10.1093\/nar\/gki008","volume":"33","author":"L Chen","year":"2005","unstructured":"Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, Jin Q (2005) VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res 33(Database issue):D325-328. https:\/\/doi.org\/10.1093\/nar\/gki008","journal-title":"Nucleic Acids Res"},{"key":"2188_CR16","doi-asserted-by":"publisher","first-page":"206","DOI":"10.1186\/s12866-014-0206-6","volume":"14","author":"Y Chen","year":"2014","unstructured":"Chen Y, Schr\u00f6der I, French CT, Jaroszewicz A, Yee XJ, Teh BE, Toesca IJ, Miller JF, Gan YH (2014) Characterization and analysis of the Burkholderia pseudomallei BsaN virulence regulon. BMC Microbiol 14:206. https:\/\/doi.org\/10.1186\/s12866-014-0206-6","journal-title":"BMC Microbiol"},{"issue":"2","key":"2188_CR17","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1128\/cmr.18.2.383-416.2005","volume":"18","author":"AC Cheng","year":"2005","unstructured":"Cheng AC, Currie BJ (2005) Melioidosis: epidemiology, pathophysiology, and management. Clin Microbiol Rev 18(2):383\u2013416. https:\/\/doi.org\/10.1128\/cmr.18.2.383-416.2005","journal-title":"Clin Microbiol Rev"},{"key":"2188_CR18","doi-asserted-by":"publisher","first-page":"16263","DOI":"10.1038\/nmicrobiol.2016.263","volume":"2","author":"C Chewapreecha","year":"2017","unstructured":"Chewapreecha C, Holden MT, Vehkala M, V\u00e4lim\u00e4ki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nat Microbiol 2:16263. https:\/\/doi.org\/10.1038\/nmicrobiol.2016.263","journal-title":"Nat Microbiol"},{"issue":"1","key":"2188_CR19","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1093\/molbev\/msab306","volume":"39","author":"C Chewapreecha","year":"2022","unstructured":"Chewapreecha C, Pensar J, Chattagul S, Pesonen M, Sangphukieo A, Boonklang P, Potisap C, Koosakulnirand S, Feil EJ, Dunachie S, Chantratita N, Limmathurotsakul D, Peacock SJ, Day NPJ, Parkhill J, Thomson NR, Sermswan RW, Corander J (2022) Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment. Mol Biolo Evol 39(1):10. https:\/\/doi.org\/10.1093\/molbev\/msab306","journal-title":"Mol Biolo Evol"},{"key":"2188_CR20","unstructured":"Clinical and Laboratory Standards Institute W, PA (2010) Clinical and Laboratory Standards Institute. 2010. Performance standards for antimicrobial susceptibility testing; twentieth informational supplement. M100-S20, vol. 30(1), p. 40\u201353"},{"issue":"Suppl 1","key":"2188_CR21","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1016\/s0035-9203(08)70002-6","volume":"102","author":"BJ Currie","year":"2008","unstructured":"Currie BJ, Dance DA, Cheng AC (2008) The global distribution of Burkholderia pseudomallei and melioidosis: an update. Trans R Soc Trop Med Hyg 102(Suppl 1):S1-4. https:\/\/doi.org\/10.1016\/s0035-9203(08)70002-6","journal-title":"Trans R Soc Trop Med Hyg"},{"key":"2188_CR22","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000748","author":"AF Florensa","year":"2022","unstructured":"Florensa AF, Kaas RS, Clausen P, Aytan-Aktug D, Aarestrup FM (2022) ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes. Microb Genom. https:\/\/doi.org\/10.1099\/mgen.0.000748","journal-title":"Microb Genom"},{"issue":"29","key":"2188_CR23","doi-asserted-by":"publisher","first-page":"12095","DOI":"10.1073\/pnas.1107183108","volume":"108","author":"CT French","year":"2011","unstructured":"French CT, Toesca IJ, Wu TH, Teslaa T, Beaty SM, Wong W, Liu M, Schr\u00f6der I, Chiou PY, Teitell MA, Miller JF (2011) Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. Proc Natl Acad Sci USA 108(29):12095\u201312100. https:\/\/doi.org\/10.1073\/pnas.1107183108","journal-title":"Proc Natl Acad Sci USA"},{"key":"2188_CR24","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1146\/annurev.micro.112408.134030","volume":"64","author":"EE Galyov","year":"2010","unstructured":"Galyov EE, Brett PJ, DeShazer D (2010) Molecular insights into Burkholderia pseudomallei and Burkholderia mallei pathogenesis. Annu Rev Microbiol 64:495\u2013517. https:\/\/doi.org\/10.1146\/annurev.micro.112408.134030","journal-title":"Annu Rev Microbiol"},{"key":"2188_CR25","doi-asserted-by":"publisher","DOI":"10.1128\/cmr.00006-19","author":"I Gassiep","year":"2020","unstructured":"Gassiep I, Armstrong M, Norton R (2020) Human melioidosis. Clin Microbiol Rev. https:\/\/doi.org\/10.1128\/cmr.00006-19","journal-title":"Clin Microbiol Rev"},{"issue":"5","key":"2188_CR26","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1128\/jcm.41.5.2068-2079.2003","volume":"41","author":"D Godoy","year":"2003","unstructured":"Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003) Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41(5):2068\u20132079. https:\/\/doi.org\/10.1128\/jcm.41.5.2068-2079.2003","journal-title":"J Clin Microbiol"},{"key":"2188_CR27","doi-asserted-by":"publisher","DOI":"10.3390\/cells10030495","author":"ME Grund","year":"2021","unstructured":"Grund ME, Soo JC, Cote CK, Berisio R, Lukomski S (2021) Thinking outside the bug: targeting outer membrane proteins for Burkholderia Vaccines. Cells. https:\/\/doi.org\/10.3390\/cells10030495","journal-title":"Cells"},{"issue":"9","key":"2188_CR28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0007727","volume":"13","author":"CM Hall","year":"2019","unstructured":"Hall CM, Jaramillo S, Jimenez R, Stone NE, Centner H, Busch JD, Bratsch N, Roe CC, Gee JE, Hoffmaster AR, Rivera-Garcia S, Soltero F, Ryff K, Perez-Padilla J, Keim P, Sahl JW, Wagner DM (2019) Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico. PLoS Negl Trop Dis 13(9):e0007727. https:\/\/doi.org\/10.1371\/journal.pntd.0007727","journal-title":"PLoS Negl Trop Dis"},{"issue":"8","key":"2188_CR29","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0006496","volume":"4","author":"Y Hara","year":"2009","unstructured":"Hara Y, Mohamed R, Nathan S (2009) Immunogenic Burkholderia pseudomallei outer membrane proteins as potential candidate vaccine targets. PLoS ONE 4(8):e6496. https:\/\/doi.org\/10.1371\/journal.pone.0006496","journal-title":"PLoS ONE"},{"issue":"26","key":"2188_CR30","doi-asserted-by":"publisher","first-page":"9786","DOI":"10.1073\/pnas.0402521101","volume":"101","author":"MT Holden","year":"2004","unstructured":"Holden MT, Feil EJ, Lindsay JA, Peacock SJ, Day NP, Enright MC, Foster TJ, Moore CE, Hurst L, Atkin R, Barron A, Bason N, Bentley SD, Chillingworth C, Chillingworth T, Churcher C, Clark L, Corton C, Cronin A, Doggett J, Dowd L, Feltwell T, Hance Z, Harris B, Hauser H, Holroyd S, Jagels K, James KD, Lennard N, Line A, Mayes R, Moule S, Mungall K, Ormond D, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Sharp S, Simmonds M, Stevens K, Whitehead S, Barrell BG, Spratt BG, Parkhill J (2004a) Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc Natl Acad Sci USA 101(26):9786\u20139791. https:\/\/doi.org\/10.1073\/pnas.0402521101","journal-title":"Proc Natl Acad Sci USA"},{"issue":"39","key":"2188_CR31","doi-asserted-by":"publisher","first-page":"14240","DOI":"10.1073\/pnas.0403302101","volume":"101","author":"MT Holden","year":"2004","unstructured":"Holden MT, Titball RW, Peacock SJ, Cerde\u00f1o-T\u00e1rraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J (2004b) Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci USA 101(39):14240\u201314245. https:\/\/doi.org\/10.1073\/pnas.0403302101","journal-title":"Proc Natl Acad Sci USA"},{"key":"2188_CR32","unstructured":"Hudzicki J (2009) Kirby-Bauer disk diffusion susceptibility test protocol. 15(1):1\u201323"},{"issue":"11","key":"2188_CR33","doi-asserted-by":"publisher","first-page":"6865","DOI":"10.1128\/aem.01036-06","volume":"72","author":"TJ Inglis","year":"2006","unstructured":"Inglis TJ, Sagripanti JL (2006) Environmental factors that affect the survival and persistence of Burkholderia pseudomallei. Appl Environ Microbiol 72(11):6865\u20136875. https:\/\/doi.org\/10.1128\/aem.01036-06","journal-title":"Appl Environ Microbiol"},{"key":"2188_CR34","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1016\/j.micpath.2014.01.001","volume":"67\u201368","author":"PM Ireland","year":"2014","unstructured":"Ireland PM, Marshall L, Norville I, Sarkar-Tyson M (2014) The serine protease inhibitor Ecotin is required for full virulence of Burkholderia pseudomallei. Microb Pathog 67\u201368:55\u201358. https:\/\/doi.org\/10.1016\/j.micpath.2014.01.001","journal-title":"Microb Pathog"},{"key":"2188_CR35","doi-asserted-by":"publisher","first-page":"595","DOI":"10.1186\/1471-2105-11-595","volume":"11","author":"KA Jolley","year":"2010","unstructured":"Jolley KA, Maiden MC (2010) BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinform 11:595. https:\/\/doi.org\/10.1186\/1471-2105-11-595","journal-title":"BMC Bioinform"},{"issue":"8","key":"2188_CR36","doi-asserted-by":"publisher","first-page":"2058","DOI":"10.1111\/j.1462-2920.2011.02671.x","volume":"14","author":"M Kaestli","year":"2012","unstructured":"Kaestli M, Schmid M, Mayo M, Rothballer M, Harrington G, Richardson L, Hill A, Hill J, Tuanyok A, Keim P, Hartmann A, Currie BJ (2012) Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environ Microbiol 14(8):2058\u20132070. https:\/\/doi.org\/10.1111\/j.1462-2920.2011.02671.x","journal-title":"Environ Microbiol"},{"issue":"50","key":"2188_CR37","doi-asserted-by":"publisher","first-page":"21761","DOI":"10.1073\/pnas.1014642108","volume":"107","author":"R Kalscheuer","year":"2010","unstructured":"Kalscheuer R, Weinrick B, Veeraraghavan U, Besra GS, Jacobs WR Jr (2010) Trehalose-recycling ABC transporter LpqY-SugA-SugB-SugC is essential for virulence of Mycobacterium tuberculosis. Proc Natl Acad Sci USA 107(50):21761\u201321766. https:\/\/doi.org\/10.1073\/pnas.1014642108","journal-title":"Proc Natl Acad Sci USA"},{"issue":"11","key":"2188_CR38","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0006915","volume":"12","author":"A Kamthan","year":"2018","unstructured":"Kamthan A, Shaw T, Mukhopadhyay C, Kumar S (2018) Molecular analysis of clinical Burkholderia pseudomallei isolates from southwestern coastal region of India, using multi-locus sequence typing. PLoS Negl Trop Dis 12(11):e0006915. https:\/\/doi.org\/10.1371\/journal.pntd.0006915","journal-title":"PLoS Negl Trop Dis"},{"key":"2188_CR39","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1016\/j.mehy.2018.09.028","volume":"121","author":"T Krakauer","year":"2018","unstructured":"Krakauer T (2018) Living dangerously: Burkholderia pseudomallei modulates phagocyte cell death to survive. Med Hypotheses 121:64\u201369. https:\/\/doi.org\/10.1016\/j.mehy.2018.09.028","journal-title":"Med Hypotheses"},{"issue":"1","key":"2188_CR40","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0245205","volume":"16","author":"VR Krishnamurthi","year":"2021","unstructured":"Krishnamurthi VR, Niyonshuti II, Chen J, Wang Y (2021) A new analysis method for evaluating bacterial growth with microplate readers. PLoS ONE 16(1):e0245205. https:\/\/doi.org\/10.1371\/journal.pone.0245205","journal-title":"PLoS ONE"},{"key":"2188_CR41","doi-asserted-by":"publisher","first-page":"10","DOI":"10.3791\/56197","volume":"15","author":"M Kurokawa","year":"2017","unstructured":"Kurokawa M, Ying BW (2017) Precise, high-throughput analysis of bacterial growth. J vis Exp JoVE 15:10. https:\/\/doi.org\/10.3791\/56197","journal-title":"J vis Exp JoVE"},{"issue":"1","key":"2188_CR42","doi-asserted-by":"publisher","first-page":"79.e71","DOI":"10.1016\/j.cmi.2015.09.016","volume":"22","author":"C Lim","year":"2016","unstructured":"Lim C, Peacock SJ, Limmathurotsakul D (2016) Association between activities related to routes of infection and clinical manifestations of melioidosis. Clinical Microbiology and Infection\u202f: the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 22(1):79.e71-79.e73. https:\/\/doi.org\/10.1016\/j.cmi.2015.09.016","journal-title":"Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases"},{"issue":"3","key":"2188_CR43","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0007123","volume":"13","author":"D Limmathurotsakul","year":"2019","unstructured":"Limmathurotsakul D, Daily F, Bory S, Khim G, Wiersinga WJ, Torres AG, Dance DAB, Currie BJ (2019) Melioidosis: The hazards of incomplete peer-review. PLoS Negl Trop Dis 13(3):e0007123. https:\/\/doi.org\/10.1371\/journal.pntd.0007123","journal-title":"PLoS Negl Trop Dis"},{"issue":"D1","key":"2188_CR44","doi-asserted-by":"publisher","first-page":"D687","DOI":"10.1093\/nar\/gky1080","volume":"47","author":"B Liu","year":"2019","unstructured":"Liu B, Zheng D, Jin Q, Chen L, Yang J (2019) VFDB 2019: a comparative pathogenomic platform with an interactive web interface. Nucleic Acids Res 47(D1):D687-d692. https:\/\/doi.org\/10.1093\/nar\/gky1080","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"2188_CR45","doi-asserted-by":"publisher","first-page":"D912","DOI":"10.1093\/nar\/gkab1107","volume":"50","author":"B Liu","year":"2022","unstructured":"Liu B, Zheng D, Zhou S, Chen L, Yang J (2022) VFDB 2022: a general classification scheme for bacterial virulence factors. Nucleic Acids Res 50(D1):D912-d917. https:\/\/doi.org\/10.1093\/nar\/gkab1107","journal-title":"Nucleic Acids Res"},{"key":"2188_CR46","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1093\/gbe\/evq003","volume":"2","author":"L Losada","year":"2010","unstructured":"Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, Schutzer SE, Keim P, Nierman WC (2010) Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biol Evol 2:102\u2013116. https:\/\/doi.org\/10.1093\/gbe\/evq003","journal-title":"Genome Biol Evol"},{"key":"2188_CR47","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2021.718719","volume":"12","author":"V Mariappan","year":"2021","unstructured":"Mariappan V, Vellasamy KM, Barathan M, Girija ASS, Shankar EM, Vadivelu J (2021) Hijacking of the Host\u2019s Immune Surveillance Radars by Burkholderia pseudomallei. Front Immunol 12:718719. https:\/\/doi.org\/10.3389\/fimmu.2021.718719","journal-title":"Front Immunol"},{"issue":"5","key":"2188_CR48","doi-asserted-by":"publisher","first-page":"1424","DOI":"10.1128\/iai.01248-15","volume":"84","author":"S McClean","year":"2016","unstructured":"McClean S, Healy ME, Collins C, Carberry S, O\u2019Shaughnessy L, Dennehy R, Adams \u00c1, Kennelly H, Corbett JM, Carty F, Cahill LA, Callaghan M, English K, Mahon BP, Doyle S, Shinoy M (2016) Linocin and OmpW are involved in attachment of the cystic fibrosis-associated pathogen Burkholderia cepacia complex to lung epithelial cells and protect mice against infection. Infect Immun 84(5):1424\u20131437. https:\/\/doi.org\/10.1128\/iai.01248-15","journal-title":"Infect Immun"},{"issue":"11","key":"2188_CR49","doi-asserted-by":"publisher","first-page":"2557","DOI":"10.1073\/pnas.1715374115","volume":"115","author":"MK McNutt","year":"2018","unstructured":"McNutt MK, Bradford M, Drazen JM, Hanson B, Howard B, Jamieson KH, Kiermer V, Marcus E, Pope BK, Schekman R, Swaminathan S, Stang PJ, Verma IM (2018) Transparency in authors\u2019 contributions and responsibilities to promote integrity in scientific publication. Proc Natl Acad Sci USA 115(11):2557\u20132560. https:\/\/doi.org\/10.1073\/pnas.1715374115","journal-title":"Proc Natl Acad Sci USA"},{"key":"2188_CR50","doi-asserted-by":"publisher","DOI":"10.1016\/j.lansea.2022.03.004","volume":"2","author":"PR Mohapatra","year":"2022","unstructured":"Mohapatra PR, Mishra B (2022) Burden of melioidosis in India and South Asia: challenges and ways forward. Lancet Reg Health Southeast Asia 2:100004. https:\/\/doi.org\/10.1016\/j.lansea.2022.03.004","journal-title":"Lancet Reg Health Southeast Asia"},{"issue":"7","key":"2188_CR51","doi-asserted-by":"publisher","first-page":"4172","DOI":"10.1128\/iai.72.7.4172-4187.2004","volume":"72","author":"RA Moore","year":"2004","unstructured":"Moore RA, Reckseidler-Zenteno S, Kim H, Nierman W, Yu Y, Tuanyok A, Warawa J, DeShazer D, Woods DE (2004) Contribution of gene loss to the pathogenic evolution of Burkholderia pseudomallei and Burkholderia mallei. Infect Immun 72(7):4172\u20134187. https:\/\/doi.org\/10.1128\/iai.72.7.4172-4187.2004","journal-title":"Infect Immun"},{"issue":"2","key":"2188_CR52","doi-asserted-by":"publisher","first-page":"10","DOI":"10.3390\/tropicalmed3020051","volume":"3","author":"C Mukhopadhyay","year":"2018","unstructured":"Mukhopadhyay C, Shaw T, Varghese GM, Dance DAB (2018) Melioidosis in South Asia (India, Nepal, Pakistan, Bhutan and Afghanistan). Trop Med Infect Dis 3(2):10. https:\/\/doi.org\/10.3390\/tropicalmed3020051","journal-title":"Trop Med Infect Dis"},{"key":"2188_CR53","doi-asserted-by":"publisher","DOI":"10.3791\/2437","author":"GA O'Toole","year":"2011","unstructured":"O\u2019Toole GA (2011) Microtiter dish biofilm formation assay. J vis Exp JoVE. https:\/\/doi.org\/10.3791\/2437","journal-title":"J vis Exp JoVE"},{"issue":"1","key":"2188_CR54","doi-asserted-by":"publisher","first-page":"9167","DOI":"10.1038\/s41598-018-27356-7","volume":"8","author":"S Paksanont","year":"2018","unstructured":"Paksanont S, Sintiprungrat K, Yimthin T, Pumirat P, Peacock SJ, Chantratita N (2018) Effect of temperature on Burkholderia pseudomallei growth, proteomic changes, motility and resistance to stress environments. Sci Rep 8(1):9167. https:\/\/doi.org\/10.1038\/s41598-018-27356-7","journal-title":"Sci Rep"},{"key":"2188_CR55","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1186\/1741-7007-7-78","volume":"7","author":"T Pearson","year":"2009","unstructured":"Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P (2009) Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol 7:78. https:\/\/doi.org\/10.1186\/1741-7007-7-78","journal-title":"BMC Biol"},{"issue":"5","key":"2188_CR56","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0037723","volume":"7","author":"EP Price","year":"2012","unstructured":"Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, Foster JT, Tan P, Tuanyok A, Limmathurotsakul D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Pearson T (2012) Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS ONE 7(5):e37723. https:\/\/doi.org\/10.1371\/journal.pone.0037723","journal-title":"PLoS ONE"},{"key":"2188_CR57","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.00388-13","author":"EP Price","year":"2013","unstructured":"Price EP, Sarovich DS, Mayo M, Tuanyok A, Drees KP, Kaestli M, Beckstrom-Sternberg SM, Babic-Sternberg JS, Kidd TJ, Bell SC, Keim P, Pearson T, Currie BJ (2013) Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. Mbio. https:\/\/doi.org\/10.1128\/mBio.00388-13","journal-title":"Mbio"},{"issue":"9","key":"2188_CR58","doi-asserted-by":"publisher","first-page":"992","DOI":"10.1099\/jmm.0.000312","volume":"65","author":"EP Price","year":"2016","unstructured":"Price EP, MacHunter B, Spratt BG, Wagner DM, Currie BJ, Sarovich DS (2016) Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species. J Med Microbiol 65(9):992\u2013997. https:\/\/doi.org\/10.1099\/jmm.0.000312","journal-title":"J Med Microbiol"},{"issue":"1","key":"2188_CR59","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1128\/iai.69.1.34-44.2001","volume":"69","author":"SL Reckseidler","year":"2001","unstructured":"Reckseidler SL, DeShazer D, Sokol PA, Woods DE (2001) Detection of bacterial virulence genes by subtractive hybridization: identification of capsular polysaccharide of Burkholderia pseudomallei as a major virulence determinant. Infect Immun 69(1):34\u201344. https:\/\/doi.org\/10.1128\/iai.69.1.34-44.2001","journal-title":"Infect Immun"},{"issue":"2","key":"2188_CR60","doi-asserted-by":"publisher","first-page":"1106","DOI":"10.1128\/iai.73.2.1106-1115.2005","volume":"73","author":"SL Reckseidler-Zenteno","year":"2005","unstructured":"Reckseidler-Zenteno SL, DeVinney R, Woods DE (2005) The capsular polysaccharide of Burkholderia pseudomallei contributes to survival in serum by reducing complement factor C3b deposition. Infect Immun 73(2):1106\u20131115. https:\/\/doi.org\/10.1128\/iai.73.2.1106-1115.2005","journal-title":"Infect Immun"},{"key":"2188_CR61","doi-asserted-by":"publisher","DOI":"10.3390\/cells9122617","author":"M Sainz-Mej\u00edas","year":"2020","unstructured":"Sainz-Mej\u00edas M, Jurado-Mart\u00edn I, McClean S (2020) Understanding Pseudomonas aeruginosa-host interactions: the ongoing quest for an efficacious vaccine. Cells. https:\/\/doi.org\/10.3390\/cells9122617","journal-title":"Cells"},{"issue":"2","key":"2188_CR62","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0009001","volume":"15","author":"M Schuit","year":"2021","unstructured":"Schuit M, Gardner S, Taylor J, Dabisch P (2021) Evaluation of four sampling devices for Burkholderia pseudomallei laboratory aerosol studies. PLoS Negl Trop Dis 15(2):e0009001. https:\/\/doi.org\/10.1371\/journal.pntd.0009001","journal-title":"PLoS Negl Trop Dis"},{"issue":"4","key":"2188_CR63","doi-asserted-by":"publisher","first-page":"1445","DOI":"10.1128\/iai.01368-13","volume":"82","author":"S Schwarz","year":"2014","unstructured":"Schwarz S, Singh P, Robertson JD, LeRoux M, Skerrett SJ, Goodlett DR, West TE, Mougous JD (2014) VgrG-5 is a Burkholderia type VI secretion system-exported protein required for multinucleated giant cell formation and virulence. Infect Immun 82(4):1445\u20131452. https:\/\/doi.org\/10.1128\/iai.01368-13","journal-title":"Infect Immun"},{"issue":"24","key":"2188_CR64","doi-asserted-by":"publisher","first-page":"9019","DOI":"10.1007\/s00253-021-11667-3","volume":"105","author":"VC Scoffone","year":"2021","unstructured":"Scoffone VC, Trespidi G, Barbieri G, Irudal S, Israyilova A, Buroni S (2021) Methodological tools to study species of the genus Burkholderia. Appl Microbiol Biotechnol 105(24):9019\u20139034. https:\/\/doi.org\/10.1007\/s00253-021-11667-3","journal-title":"Appl Microbiol Biotechnol"},{"key":"2188_CR65","doi-asserted-by":"publisher","first-page":"1103297","DOI":"10.3389\/fmicb.2023.1103297","volume":"14","author":"R Seng","year":"2023","unstructured":"Seng R, Phunpang R, Saiprom N, Dulsuk A, Chewapreecha C, Thaipadungpanit J, Batty EM, Chantratita W, West TE, Chantratita N (2023) Phenotypic and genetic alterations of Burkholderia pseudomallei in patients during relapse and persistent infections. Front Microbiol 14:1103297. https:\/\/doi.org\/10.3389\/fmicb.2023.1103297","journal-title":"Front Microbiol"},{"key":"2188_CR66","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.902996","volume":"13","author":"T Shaw","year":"2022","unstructured":"Shaw T, Assig K, Tellapragada C, Wagner GE, Choudhary M, G\u00f6hler A, Eshwara VK, Steinmetz I, Mukhopadhyay C (2022) Environmental Factors Associated With Soil Prevalence of the Melioidosis Pathogen Burkholderia pseudomallei: A Longitudinal Seasonal Study From South West India. Front Microbiol 13:902996. https:\/\/doi.org\/10.3389\/fmicb.2022.902996","journal-title":"Front Microbiol"},{"issue":"3","key":"2188_CR67","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1046\/j.1365-2958.2002.03190.x","volume":"46","author":"MP Stevens","year":"2002","unstructured":"Stevens MP, Wood MW, Taylor LA, Monaghan P, Hawes P, Jones PW, Wallis TS, Galyov EE (2002) An Inv\/Mxi-Spa-like type III protein secretion system in Burkholderia pseudomallei modulates intracellular behaviour of the pathogen. Mol Microbiol 46(3):649\u2013659. https:\/\/doi.org\/10.1046\/j.1365-2958.2002.03190.x","journal-title":"Mol Microbiol"},{"issue":"2","key":"2188_CR68","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1038\/nrmicro1320","volume":"4","author":"JM Stevens","year":"2006","unstructured":"Stevens JM, Galyov EE, Stevens MP (2006) Actin-dependent movement of bacterial pathogens. Nat Rev Microbiol 4(2):91\u2013101. https:\/\/doi.org\/10.1038\/nrmicro1320","journal-title":"Nat Rev Microbiol"},{"issue":"12","key":"2188_CR69","doi-asserted-by":"publisher","first-page":"1487","DOI":"10.1586\/14787210.2014.970634","volume":"12","author":"JK Stone","year":"2014","unstructured":"Stone JK, DeShazer D, Brett PJ, Burtnick MN (2014) Melioidosis: molecular aspects of pathogenesis. Expert Rev Anti Infect Ther 12(12):1487\u20131499. https:\/\/doi.org\/10.1586\/14787210.2014.970634","journal-title":"Expert Rev Anti Infect Ther"},{"issue":"31","key":"2188_CR70","doi-asserted-by":"publisher","first-page":"5005","DOI":"10.1016\/j.vaccine.2010.05.022","volume":"28","author":"YC Su","year":"2010","unstructured":"Su YC, Wan KL, Mohamed R, Nathan S (2010) Immunization with the recombinant Burkholderia pseudomallei outer membrane protein Omp85 induces protective immunity in mice. Vaccine 28(31):5005\u20135011. https:\/\/doi.org\/10.1016\/j.vaccine.2010.05.022","journal-title":"Vaccine"},{"issue":"4","key":"2188_CR71","doi-asserted-by":"publisher","first-page":"1436","DOI":"10.1128\/iai.01367-13","volume":"82","author":"IJ Toesca","year":"2014","unstructured":"Toesca IJ, French CT, Miller JF (2014) The Type VI secretion system spike protein VgrG5 mediates membrane fusion during intercellular spread by pseudomallei group Burkholderia species. Infect Immun 82(4):1436\u20131444. https:\/\/doi.org\/10.1128\/iai.01367-13","journal-title":"Infect Immun"},{"key":"2188_CR72","doi-asserted-by":"publisher","first-page":"566","DOI":"10.1186\/1471-2164-9-566","volume":"9","author":"A Tuanyok","year":"2008","unstructured":"Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P (2008) Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics 9:566. https:\/\/doi.org\/10.1186\/1471-2164-9-566","journal-title":"BMC Genomics"},{"issue":"1","key":"2188_CR73","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0005241","volume":"11","author":"J Vadivelu","year":"2017","unstructured":"Vadivelu J, Vellasamy KM, Thimma J, Mariappan V, Kang WT, Choh LC, Shankar EM, Wong KT (2017) Survival and Intra-Nuclear Trafficking of Burkholderia pseudomallei: Strategies of Evasion from Immune Surveillance? PLoS Negl Trop Dis 11(1):e0005241. https:\/\/doi.org\/10.1371\/journal.pntd.0005241","journal-title":"PLoS Negl Trop Dis"},{"key":"2188_CR74","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1186\/1471-2105-7-142","volume":"7","author":"S Waack","year":"2006","unstructured":"Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R (2006) Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinform 7:142. https:\/\/doi.org\/10.1186\/1471-2105-7-142","journal-title":"BMC Bioinform"},{"key":"2188_CR75","doi-asserted-by":"publisher","first-page":"17107","DOI":"10.1038\/nrdp.2017.107","volume":"4","author":"WJ Wiersinga","year":"2018","unstructured":"Wiersinga WJ, Virk HS, Torres AG, Currie BJ, Peacock SJ, Dance DAB, Limmathurotsakul D (2018) Melioidosis. Nat Rev Dis Primers 4:17107. https:\/\/doi.org\/10.1038\/nrdp.2017.107","journal-title":"Nat Rev Dis Primers"},{"issue":"2","key":"2188_CR76","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1016\/s1286-4579(99)80007-0","volume":"1","author":"DE Woods","year":"1999","unstructured":"Woods DE, DeShazer D, Moore RA, Brett PJ, Burtnick MN, Reckseidler SL, Senkiw MD (1999) Current studies on the pathogenesis of melioidosis. Microbes Infect 1(2):157\u2013162. https:\/\/doi.org\/10.1016\/s1286-4579(99)80007-0","journal-title":"Microbes Infect"},{"issue":"11","key":"2188_CR77","doi-asserted-by":"publisher","first-page":"5388","DOI":"10.1128\/AAC.05517-11","volume":"55","author":"V Wuthiekanun","year":"2011","unstructured":"Wuthiekanun V, Amornchai P, Saiprom N, Chantratita N, Chierakul W, Koh GC, Chaowagul W, Day NP, Limmathurotsakul D, Peacock SJ (2011) Survey of antimicrobial resistance in clinical Burkholderia pseudomallei isolates over two decades in Northeast Thailand. Antimicrob Agents Chemother 55(11):5388\u20135391","journal-title":"Antimicrob Agents Chemother"},{"issue":"11","key":"2188_CR78","doi-asserted-by":"publisher","first-page":"2640","DOI":"10.1093\/jac\/dks261","volume":"67","author":"E Zankari","year":"2012","unstructured":"Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV (2012) Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 67(11):2640\u20132644. https:\/\/doi.org\/10.1093\/jac\/dks261","journal-title":"J Antimicrob Chemother"}],"container-title":["Molecular Genetics and Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-024-02188-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00438-024-02188-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00438-024-02188-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T15:04:10Z","timestamp":1729695850000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00438-024-02188-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,10,23]]},"references-count":78,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2024,12]]}},"alternative-id":["2188"],"URL":"https:\/\/doi.org\/10.1007\/s00438-024-02188-5","relation":{},"ISSN":["1617-4615","1617-4623"],"issn-type":[{"value":"1617-4615","type":"print"},{"value":"1617-4623","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,10,23]]},"assertion":[{"value":"2 September 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 September 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 October 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no financial or non-financial conflict of interests.\u00a0This study is submitted following the ICMJE guidelines (McNutt et al. ).","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"The ethical committee approval to study this patient sample was duly taken from the institute. All the work in this study was done in compliance to the Institutional Biosafety Committee. Whole Genome Sequencing was outsourced to Medgenome Labs Ltd. All bioinformatics analysis was done in-house using a custom analysis pipeline as described in the methods section.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}}],"article-number":"98"}}