{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T12:59:11Z","timestamp":1792155551733,"version":"4.4.0"},"reference-count":101,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2025,4,1]],"date-time":"2025-04-01T00:00:00Z","timestamp":1743465600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,4,1]],"date-time":"2025-04-01T00:00:00Z","timestamp":1743465600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100002749","name":"Belgian Federal Science Policy Office","doi-asserted-by":"publisher","award":["B2\/191\/P1\/COFFEEBRIDGE"],"award-info":[{"award-number":["B2\/191\/P1\/COFFEEBRIDGE"]}],"id":[{"id":"10.13039\/501100002749","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mycorrhiza"],"published-print":{"date-parts":[[2025,4]]},"DOI":"10.1007\/s00572-025-01204-9","type":"journal-article","created":{"date-parts":[[2025,4,14]],"date-time":"2025-04-14T07:11:03Z","timestamp":1744614663000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Impact of agricultural systems on arbuscular mycorrhizal fungi community composition in robusta coffee roots in the Democratic Republic of congo"],"prefix":"10.1007","volume":"35","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5370-0113","authenticated-orcid":false,"given":"Ieben","family":"Broeckhoven","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9343-7209","authenticated-orcid":false,"given":"Arne","family":"Devriese","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4287-8511","authenticated-orcid":false,"given":"Olivier","family":"Honnay","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6440-5363","authenticated-orcid":false,"given":"Roel","family":"Merckx","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5169-7176","authenticated-orcid":false,"given":"Verbist","family":"Bruno","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,4,14]]},"reference":[{"key":"1204_CR1","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1111\/2041-210X.12849","volume":"9","author":"A Alberdi","year":"2018","unstructured":"Alberdi A, Aizpurua O, Gilbert MTP, Bohmann K (2018) Scrutinizing key steps for reliable metabarcoding of environmental samples. Methods Ecol Evol 9:134\u2013147. https:\/\/doi.org\/10.1111\/2041-210X.12849","journal-title":"Methods Ecol Evol"},{"key":"1204_CR2","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1146\/ANNUREV.PHYTO.41.052002.095518\/CITE\/REFWORKS","volume":"41","author":"MF Allen","year":"2003","unstructured":"Allen MF, Swenson W, Querejeta JI, Egerton-Warburton LM, Treseder KK (2003) Ecology of mycorrhizae: A conceptual framework for complex interactions among plants and fungi. Annu Rev Phytopathol 41:271\u2013303. https:\/\/doi.org\/10.1146\/ANNUREV.PHYTO.41.052002.095518\/CITE\/REFWORKS","journal-title":"Annu Rev Phytopathol"},{"key":"1204_CR3","unstructured":"\u00c1lvarez-S\u00e1nchez J, Johnson N, Antoninka A, Chaudhary V, Lau M, SM, O (2011) Large-scale diversity patterns in spore communities of arbuscular mycorrhizal fungi. Mycorrhiza"},{"key":"1204_CR4","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1017\/S0021859608008344","volume":"147","author":"SAL Andrade","year":"2009","unstructured":"Andrade SAL, Mazzafera P, Schiavinato MA, Silveira APD (2009) Arbuscular mycorrhizal association in coffee. J Agric Sci 147:105\u2013115. https:\/\/doi.org\/10.1017\/S0021859608008344","journal-title":"J Agric Sci"},{"key":"1204_CR5","unstructured":"Arbizu MP (2020) pairwiseAdonis: Pairwise multilevel comparison using adonis"},{"key":"1204_CR6","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1007\/S10457-011-9414-3\/TABLES\/5","volume":"85","author":"RM Arias","year":"2012","unstructured":"Arias RM, Heredia-Abarca G, Sosa VJ, Fuentes-Ram\u00edrez LE (2012) Diversity and abundance of arbuscular mycorrhizal fungi spores under different coffee production systems and in a tropical montane cloud forest patch in Veracruz, Mexico. Agroforest Syst 85:179\u2013193. https:\/\/doi.org\/10.1007\/S10457-011-9414-3\/TABLES\/5","journal-title":"Agroforest Syst"},{"key":"1204_CR7","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/s005720100097","volume":"11","author":"RM Aug\u00e9","year":"2001","unstructured":"Aug\u00e9 RM (2001) Water relations, drought and vesicular-arbuscular mycorrhizal symbiosis. Mycorrhiza 11:3\u201342","journal-title":"Mycorrhiza"},{"key":"1204_CR8","doi-asserted-by":"publisher","first-page":"450","DOI":"10.4314\/AJOSI.V7I1.29","volume":"7","author":"LPB Bamenga","year":"2024","unstructured":"Bamenga LPB, Broeckhoven I, Verbist B, Stoffelen P, Trefon T (2024) The history of robusta coffee cultivation in the Tshopo Province, Democratic Republic of the congo. Afr J Social Issues 7:450\u2013466. https:\/\/doi.org\/10.4314\/AJOSI.V7I1.29","journal-title":"Afr J Social Issues"},{"key":"1204_CR9","unstructured":"Barto\u0144 K (2023) MuMIn: Multi-modal inference. Cran"},{"key":"1204_CR10","unstructured":"Bates D, Maechler M, Bolker B, Walker S, Haubo R, Christensen B, Singmann H, Dai B, Scheipl F (2015) Package \u2018lme4.\u2019"},{"key":"1204_CR11","doi-asserted-by":"publisher","unstructured":"Bertolini V, Monta\u00f1o NM, Chimal S\u00e1nchez E, Varela Fregoso L, G\u00f3mez Ruiz J, Mart\u00ednez V\u00e1zquez JM, Bertolini V, Monta\u00f1o NM, Chimal E, S\u00e1nchez, Varela Fregoso L, G\u00f3mez Ruiz J, Mart\u00ednez V\u00e1zquez JM (2018) Abundance and richness of arbuscular mycorrhizal fungi in coffee plantations from Soconusco, Chiapas, Mexico. Rev Biol Trop 66:91\u2013105. https:\/\/doi.org\/10.15517\/RBT.V66I1.27946","DOI":"10.15517\/RBT.V66I1.27946"},{"key":"1204_CR12","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fsufs.2024.1382976","volume":"8","author":"R Bollen","year":"2024","unstructured":"Bollen R, Verleysen L, Katshela BN, Kambale JL, Ebele T, Ruttink T, Vandelook F, Honnay O, Stoffelen P (2024) Sensory profiles of robusta coffee (Coffea canephora) genetic resources from the Democratic Republic of the congo. Front Sustain Food Syst 8:1\u201311. https:\/\/doi.org\/10.3389\/fsufs.2024.1382976","journal-title":"Front Sustain Food Syst"},{"key":"1204_CR13","doi-asserted-by":"publisher","unstructured":"Broeckhoven I, Depecker J, Muliwambene TK, Honnay O, Merckx R, Verbist B (2025a) Synergies and trade-offs between robusta yield, carbon stocks, and biodiversity across coffee systems in the DR congo. https:\/\/doi.org\/10.2139\/ssrn.4788401. Manuscript submitted for publication Agroforestry Systems","DOI":"10.2139\/ssrn.4788401"},{"key":"1204_CR14","doi-asserted-by":"crossref","unstructured":"Broeckhoven I, Muliwambene TK, Anio JA, Djailo BD, Verbist B (2025b) Farmer preferences and selection criteria for shade trees in robusta coffee agroforestry systems in Tshopo Province, DRC. Biodivers Conserv In Review.","DOI":"10.2139\/ssrn.5012351"},{"key":"1204_CR15","doi-asserted-by":"publisher","first-page":"1108","DOI":"10.1111\/nph.14976","volume":"220","author":"MC Brundrett","year":"2018","unstructured":"Brundrett MC, Tedersoo L (2018) Evolutionary history of mycorrhizal symbioses and global host plant diversity. New Phytol 220:1108\u20131115. https:\/\/doi.org\/10.1111\/nph.14976","journal-title":"New Phytol"},{"key":"1204_CR16","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1007\/S10584-014-1306-X\/FIGURES\/5","volume":"129","author":"C Bunn","year":"2015","unstructured":"Bunn C, L\u00e4derach P, Ovalle Rivera O, Kirschke D (2015) A bitter cup: climate change profile of global production of Arabica and robusta coffee. Clim Change 129:89\u2013101. https:\/\/doi.org\/10.1007\/S10584-014-1306-X\/FIGURES\/5","journal-title":"Clim Change"},{"key":"1204_CR17","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1016\/J.AGEE.2006.03.011","volume":"116","author":"IM Cardoso","year":"2006","unstructured":"Cardoso IM, Kuyper TW (2006) Mycorrhizas and tropical soil fertility. Agric Ecosyst Environ 116:72\u201384. https:\/\/doi.org\/10.1016\/J.AGEE.2006.03.011","journal-title":"Agric Ecosyst Environ"},{"key":"1204_CR18","doi-asserted-by":"publisher","first-page":"999","DOI":"10.1128\/aem.02874-09","volume":"76","author":"HF Castro","year":"2010","unstructured":"Castro HF, Classen AT, Austin EE, Norby RJ, Schadt CW (2010) Soil microbial community responses to multiple experimental climate change drivers. Appl Environ Microbiol 76:999\u20131007. https:\/\/doi.org\/10.1128\/aem.02874-09","journal-title":"Appl Environ Microbiol"},{"key":"1204_CR19","doi-asserted-by":"publisher","first-page":"867","DOI":"10.1080\/01904160009382068","volume":"23","author":"RB Clark","year":"2000","unstructured":"Clark RB, Zeto SK (2000) Mineral acquisition by arbuscular mycorrhizal plants. J Plant Nutr 23:867\u2013902. https:\/\/doi.org\/10.1080\/01904160009382068","journal-title":"J Plant Nutr"},{"key":"1204_CR74","unstructured":"Core Team R (2020) R: A language and environment for statistical computing"},{"key":"1204_CR20","doi-asserted-by":"publisher","first-page":"e47981","DOI":"10.1371\/JOURNAL.PONE.0047981","volume":"7","author":"AP Davis","year":"2012","unstructured":"Davis AP, Gole TW, Baena S, Moat J (2012) The impact of climate change on Indigenous Arabica coffee (Coffea arabica): Predicting Future Trends and Identifying Priorities. PLoS ONE 7:e47981. https:\/\/doi.org\/10.1371\/JOURNAL.PONE.0047981","journal-title":"PLoS ONE"},{"issue":"4 7","key":"1204_CR21","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1038\/s41477-021-00891-4","volume":"7","author":"AP Davis","year":"2021","unstructured":"Davis AP, Mieulet D, Moat J, Sarmu D, Haggar J (2021a) Arabica-like flavour in a heat-tolerant wild coffee species. Nat Plants 2021 7(4 7):413\u2013418. https:\/\/doi.org\/10.1038\/s41477-021-00891-4","journal-title":"Nat Plants 2021"},{"issue":"4 7","key":"1204_CR22","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1038\/s41477-021-00891-4","volume":"7","author":"AP Davis","year":"2021","unstructured":"Davis AP, Mieulet D, Moat J, Sarmu D, Haggar J (2021b) Arabica-like flavour in a heat-tolerant wild coffee species. Nat Plants 2021 7(4 7):413\u2013418. https:\/\/doi.org\/10.1038\/s41477-021-00891-4","journal-title":"Nat Plants 2021"},{"key":"1204_CR23","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1007\/S13593-014-0231-8","volume":"35","author":"M De Beenhouwer","year":"2015","unstructured":"De Beenhouwer M, Muleta D, Peeters B, Van Geel M, Lievens B, Honnay O (2015a) DNA pyrosequencing evidence for large diversity differences between natural and managed coffee mycorrhizal fungal communities. Agron Sustain Dev 35:241\u2013249. https:\/\/doi.org\/10.1007\/S13593-014-0231-8","journal-title":"Agron Sustain Dev"},{"key":"1204_CR24","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1016\/J.SOILBIO.2015.08.037","volume":"91","author":"M De Beenhouwer","year":"2015","unstructured":"De Beenhouwer M, Van Geel M, Ceulemans T, Muleta D, Lievens B, Honnay O (2015b) Changing soil characteristics alter the arbuscular mycorrhizal fungi communities of Arabica coffee (Coffea arabica) in Ethiopia across a management intensity gradient. Soil Biol Biochem 91:133\u2013139. https:\/\/doi.org\/10.1016\/J.SOILBIO.2015.08.037","journal-title":"Soil Biol Biochem"},{"key":"1204_CR25","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1016\/J.SOILBIO.2015.08.037","volume":"91","author":"M De Beenhouwer","year":"2015","unstructured":"De Beenhouwer M, Van Geel M, Ceulemans T, Muleta D, Lievens B, Honnay O (2015c) Changing soil characteristics alter the arbuscular mycorrhizal fungi communities of Arabica coffee (Coffea arabica) in Ethiopia across a management intensity gradient. Soil Biol Biochem 91:133\u2013139. https:\/\/doi.org\/10.1016\/J.SOILBIO.2015.08.037","journal-title":"Soil Biol Biochem"},{"key":"1204_CR26","doi-asserted-by":"publisher","first-page":"3566","DOI":"10.1890\/08-1823.1","volume":"90","author":"M De C\u00e1ceres","year":"2009","unstructured":"De C\u00e1ceres M, Legendre P (2009) Associations between species and groups of sites: indices and statistical inference. Ecology 90:3566\u20133574. https:\/\/doi.org\/10.1890\/08-1823.1","journal-title":"Ecology"},{"key":"1204_CR27","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1007\/S00572-014-0596-1\/FIGURES\/7","volume":"25","author":"S Deepika","year":"2015","unstructured":"Deepika S, Kothamasi D (2015) Soil moisture\u2014a regulator of arbuscular mycorrhizal fungal community assembly and symbiotic phosphorus uptake. Mycorrhiza 25:67\u201375. https:\/\/doi.org\/10.1007\/S00572-014-0596-1\/FIGURES\/7","journal-title":"Mycorrhiza"},{"key":"1204_CR28","first-page":"345","volume":"67","author":"M Dufrene","year":"1997","unstructured":"Dufrene M, Legendre P (1997) Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr 67:345\u2013366","journal-title":"Ecol Monogr"},{"key":"1204_CR29","doi-asserted-by":"publisher","first-page":"607935","DOI":"10.3389\/FSUFS.2020.607935\/BIBTEX","volume":"4","author":"B Duong","year":"2020","unstructured":"Duong B, Marraccini P, Maeght JL, Vaast P, Lebrun M, Duponnois R (2020) Coffee microbiota and its potential use in sustainable crop management. A review. Front Sustain Food Syst 4:607935. https:\/\/doi.org\/10.3389\/FSUFS.2020.607935\/BIBTEX","journal-title":"Front Sustain Food Syst"},{"key":"1204_CR30","doi-asserted-by":"publisher","first-page":"996","DOI":"10.1038\/nmeth.2604","volume":"10","author":"RC Edgar","year":"2013","unstructured":"Edgar RC (2013) Highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996\u2013998. https:\/\/doi.org\/10.1038\/nmeth.2604","journal-title":"Nat Methods"},{"key":"1204_CR31","doi-asserted-by":"publisher","first-page":"3476","DOI":"10.1093\/BIOINFORMATICS\/BTV401","volume":"31","author":"RC Edgar","year":"2015","unstructured":"Edgar RC, Flyvbjerg H (2015) Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics 31:3476\u20133482. https:\/\/doi.org\/10.1093\/BIOINFORMATICS\/BTV401","journal-title":"Bioinformatics"},{"key":"1204_CR32","doi-asserted-by":"publisher","unstructured":"Englund SR, O\u2019Brien JJ, Clark DB (2011) Evaluation of digital and film hemispherical photography and spherical densiometry for measuring forest light environments. https:\/\/doi.org\/10.1139\/x00-116 30, 1999\u20132005. https:\/\/doi.org\/10.1139\/X00-116","DOI":"10.1139\/x00-116"},{"key":"1204_CR33","doi-asserted-by":"publisher","unstructured":"FAO (2023) Food Outlook\u2013 Biannual report on global food markets. Rome. https:\/\/doi.org\/10.4060\/cc3020en","DOI":"10.4060\/cc3020en"},{"key":"1204_CR34","doi-asserted-by":"publisher","unstructured":"Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 2009 459:7244 459, 193\u2013199. https:\/\/doi.org\/10.1038\/nature08058","DOI":"10.1038\/nature08058"},{"key":"1204_CR35","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1094\/PBIOMES-04-19-0021","volume":"4","author":"R Fulthorpe","year":"2020","unstructured":"Fulthorpe R, Martin AR, Isaac ME (2020) Root endophytes of coffee (Coffea arabica): Variation across climatic gradients and relationships with functional traits. Phytobiomes J 4:27\u201339. https:\/\/doi.org\/10.1094\/PBIOMES-04-19-0021-R\/ASSET\/IMAGES\/LARGE\/PBIOMES-04-19-0021-RF3.JPEG.","journal-title":"Phytobiomes J"},{"key":"1204_CR36","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1111\/J.1365-2699.2011.02588.X","volume":"39","author":"J Geml","year":"2012","unstructured":"Geml J, Timling I, Robinson CH, Lennon N, Nusbaum HC, Brochmann C, Noordeloos ME, Taylor DL (2012) An Arctic community of symbiotic fungi assembled by long-distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA. J Biogeogr 39:74\u201388. https:\/\/doi.org\/10.1111\/J.1365-2699.2011.02588.X","journal-title":"J Biogeogr"},{"key":"1204_CR37","unstructured":"Gilson P, Van Wambeke A, Gutzweiler R (1956) Notice Explicative de la Carte des Sols et de la V\u00e9g\u00e9tation, N\u00b0 6: Yangambi, planchette 2: Yangambi"},{"key":"1204_CR38","doi-asserted-by":"publisher","first-page":"1365","DOI":"10.1007\/S10531-011-0032-1\/FIGURES\/6","volume":"20","author":"\u0141 G\u0142owacki","year":"2011","unstructured":"G\u0142owacki \u0141 (2011) Accuracy of species richness estimators applied to fish in small and large temperate lowland rivers. Biodivers Conserv 20:1365\u20131384. https:\/\/doi.org\/10.1007\/S10531-011-0032-1\/FIGURES\/6","journal-title":"Biodivers Conserv"},{"key":"1204_CR39","doi-asserted-by":"crossref","unstructured":"Gotelli NJ, Chao A (2013) Measuring and estimating species richness, species diversity, and biotic similarity from sampling data. Encyclopedia of biodiversity","DOI":"10.1016\/B978-0-12-384719-5.00424-X"},{"key":"1204_CR40","doi-asserted-by":"publisher","unstructured":"Hartmann A, Schmid M, Van Tuinen A, Schmid M, Tuinen DV, Berg G (2008) Plant-driven selection of microbes. Plant and Soil 2008 321:1 321, 235\u2013257. https:\/\/doi.org\/10.1007\/S11104-008-9814-Y","DOI":"10.1007\/S11104-008-9814-Y"},{"key":"1204_CR41","doi-asserted-by":"publisher","first-page":"498","DOI":"10.1038\/ISMEJ.2012.127","volume":"7","author":"C Hazard","year":"2013","unstructured":"Hazard C, Gosling P, Van Der Gast CJ, Mitchell DT, Doohan FM, Bending GD (2013) The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale. ISME J 7:498\u2013508. https:\/\/doi.org\/10.1038\/ISMEJ.2012.127","journal-title":"ISME J"},{"key":"1204_CR42","doi-asserted-by":"publisher","first-page":"600","DOI":"10.1016\/J.TPLANTS.2010.08.009","volume":"15","author":"G Herder","year":"2010","unstructured":"Herder G, Van Den G, Beeckman T, De Smet I (2010) The roots of a new green revolution. Trends Plant Sci 15:600\u2013607. https:\/\/doi.org\/10.1016\/J.TPLANTS.2010.08.009","journal-title":"Trends Plant Sci"},{"key":"1204_CR44","unstructured":"ICO (2021) Historical Data on the Global Coffee Trade - DRC Robusta Coffee production [WWW Document]. Statistical publication of the International Coffee Organization. URL https:\/\/www.ico.org\/new_historical.asp (accessed 10.24.21)"},{"key":"1204_CR43","unstructured":"ICO (2023) Historical Data on the Global Coffee Trade [WWW Document]. Statistical publication of the International Coffee Organization. URL (accessed 10.7.23)"},{"key":"1204_CR45","unstructured":"ICO CFC, WB (2000) ICO\/CFC study of marketing and trading policies and systems in selected coffee producing countries -. Democratic Republic of the Congo"},{"key":"1204_CR46","doi-asserted-by":"publisher","first-page":"2118","DOI":"10.1111\/MEC.12706","volume":"23","author":"J Jansa","year":"2014","unstructured":"Jansa J, Erb A, Oberholzer HR, \u0160milauer P, Egli S (2014) Soil and geography are more important determinants of Indigenous arbuscular mycorrhizal communities than management practices in Swiss agricultural soils. Mol Ecol 23:2118\u20132135. https:\/\/doi.org\/10.1111\/MEC.12706","journal-title":"Mol Ecol"},{"key":"1204_CR47","doi-asserted-by":"publisher","first-page":"335","DOI":"10.1007\/S10584-017-2101-2\/FIGURES\/8","volume":"145","author":"M Jayakumar","year":"2017","unstructured":"Jayakumar M, Rajavel M, Surendran U, Gopinath G, Ramamoorthy K (2017) Impact of climate variability on coffee yield in India\u2014with a micro-level case study using long-term coffee yield data of humid tropical Kerala. Clim Change 145:335\u2013349. https:\/\/doi.org\/10.1007\/S10584-017-2101-2\/FIGURES\/8","journal-title":"Clim Change"},{"issue":"1 8","key":"1204_CR48","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-018-34736-6","volume":"8","author":"M Jemo","year":"2018","unstructured":"Jemo M, Dhiba D, Hashem A, Abd Allah EF, Alqarawi AA, Tran LSP (2018) Mycorrhizal fungal community structure in tropical humid soils under fallow and cropping conditions. Sci Rep 2018 8(1 8):1\u201317. https:\/\/doi.org\/10.1038\/s41598-018-34736-6","journal-title":"Sci Rep 2018"},{"key":"1204_CR49","doi-asserted-by":"publisher","first-page":"e0209093","DOI":"10.1371\/JOURNAL.PONE.0209093","volume":"14","author":"PP J\u00fanior","year":"2019","unstructured":"J\u00fanior PP, Moreira BC, da Silva M, de Reis CS, Veloso TG, St\u00fcrmer SL, Fernandes A, De S\u00e1 Mendon\u00e7a RB, Kasuya EM, M.C (2019) Agroecological coffee management increases arbuscular mycorrhizal fungi diversity. PLoS ONE 14:e0209093. https:\/\/doi.org\/10.1371\/JOURNAL.PONE.0209093","journal-title":"PLoS ONE"},{"key":"1204_CR50","doi-asserted-by":"publisher","first-page":"72","DOI":"10.9734\/JAERI\/2022\/V23I330225","volume":"23","author":"D Kasaka","year":"2022","unstructured":"Kasaka D, Onautshu OD, Muliwambene K, Lebisabo B, Katho G, Baert G, Swennen RL, Haesaert G, Dhed\u2019a DB (2022) Influence of agrosystems on the diversity of mycorrhizae under plantain banana cultivation in the forest region of Kisangani (Tshopo Province, DR Congo). J Agric Ecol Res Int 23:72\u201384. https:\/\/doi.org\/10.9734\/JAERI\/2022\/V23I330225","journal-title":"J Agric Ecol Res Int"},{"key":"1204_CR51","doi-asserted-by":"publisher","first-page":"410","DOI":"10.1038\/s41579-018-0029-9","volume":"16","author":"R Knight","year":"2018","unstructured":"Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC (2018) Best practices for analysing microbiomes. Nat Rev Microbiol 16:410\u2013422. https:\/\/doi.org\/10.1038\/s41579-018-0029-9","journal-title":"Nat Rev Microbiol"},{"key":"1204_CR52","doi-asserted-by":"publisher","first-page":"5112","DOI":"10.1128\/aem.01043-13","volume":"79","author":"JJ Kozich","year":"2013","unstructured":"Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD (2013) Development of a Dual-Index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the miseq illumina sequencing platform. Appl Environ Microbiol 79:5112\u20135120. https:\/\/doi.org\/10.1128\/aem.01043-13","journal-title":"Appl Environ Microbiol"},{"key":"1204_CR53","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1111\/J.1462-2920.2009.02051.X","volume":"12","author":"V Kunin","year":"2010","unstructured":"Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12:118\u2013123. https:\/\/doi.org\/10.1111\/J.1462-2920.2009.02051.X","journal-title":"Environ Microbiol"},{"key":"1204_CR54","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/S10584-016-1788-9\/TABLES\/2","volume":"141","author":"P L\u00e4derach","year":"2017","unstructured":"L\u00e4derach P, Ramirez\u2013Villegas J, Navarro-Racines C, Zelaya C, Martinez\u2013Valle A, Jarvis A (2017) Climate change adaptation of coffee production in space and time. Clim Change 141:47\u201362. https:\/\/doi.org\/10.1007\/S10584-016-1788-9\/TABLES\/2","journal-title":"Clim Change"},{"key":"1204_CR55","doi-asserted-by":"publisher","first-page":"973","DOI":"10.1007\/S11295-010-0306-X\/FIGURES\/4","volume":"6","author":"P Lashermes","year":"2010","unstructured":"Lashermes P, Combes MC, Ribas A, Cenci A, Mah\u00e9 L, Etienne H (2010) Genetic and physical mapping of the SH3 region that confers resistance to leaf rust in coffee tree (Coffea Arabica L). Tree Genet Genomes 6:973\u2013980. https:\/\/doi.org\/10.1007\/S11295-010-0306-X\/FIGURES\/4","journal-title":"Tree Genet Genomes"},{"key":"1204_CR56","doi-asserted-by":"publisher","first-page":"5111","DOI":"10.1128\/AEM.00335-09","volume":"75","author":"CL Lauber","year":"2009","unstructured":"Lauber CL, Hamady M, Knight R, Fierer N (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75:5111\u20135120. https:\/\/doi.org\/10.1128\/AEM.00335-09","journal-title":"Appl Environ Microbiol"},{"key":"1204_CR57","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1111\/J.1469-8137.2008.02630.X","volume":"181","author":"J Leigh","year":"2009","unstructured":"Leigh J, Hodge A, Fitter AH (2009) Arbuscular mycorrhizal fungi can transfer substantial amounts of nitrogen to their host plant from organic material. New Phytol 181:199\u2013207. https:\/\/doi.org\/10.1111\/J.1469-8137.2008.02630.X","journal-title":"New Phytol"},{"key":"1204_CR58","doi-asserted-by":"publisher","first-page":"314","DOI":"10.1093\/FORESTSCIENCE\/2.4.314","volume":"2","author":"PE Lemmon","year":"1956","unstructured":"Lemmon PE (1956) A spherical densiometer for estimating forest overstory density. For Sci 2:314\u2013320. https:\/\/doi.org\/10.1093\/FORESTSCIENCE\/2.4.314","journal-title":"For Sci"},{"key":"1204_CR59","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1111\/2041-210X.13115","volume":"10","author":"DT McKnight","year":"2019","unstructured":"McKnight DT, Huerlimann R, Bower DS, Schwarzkopf L, Alford RA, Zenger KR (2019) Methods for normalizing Microbiome data: an ecological perspective. Methods Ecol Evol 10:389\u2013400. https:\/\/doi.org\/10.1111\/2041-210X.13115","journal-title":"Methods Ecol Evol"},{"key":"1204_CR60","doi-asserted-by":"publisher","first-page":"e61217","DOI":"10.1371\/JOURNAL.PONE.0061217","volume":"8","author":"PJ McMurdie","year":"2013","unstructured":"McMurdie PJ, Holmes S (2013) Phyloseq: an R package for reproducible interactive analysis and graphics of Microbiome census data. PLoS ONE 8:e61217. https:\/\/doi.org\/10.1371\/JOURNAL.PONE.0061217","journal-title":"PLoS ONE"},{"key":"1204_CR61","doi-asserted-by":"publisher","unstructured":"Mikryukov V, Dulya O, Zizka A, Bahram M, Hagh-Doust N, Anslan S, Prylutskyi O, Delgado-Baquerizo M, Maestre FT, Nilsson H, P\u00e4rn J, \u00d6pik M, Moora M, Zobel M, Espenberg M, Mander \u00dc, Khalid AN, Corrales A, Agan A, Vasco-Palacios AM, Saitta A, Rinaldi A, Verbeken A, Sulistyo B, Tamgnoue B, Furneaux B, Ritter CD, Nyamukondiwa C, Sharp C, Mar\u00edn C, Gohar D, Klavina D, Sharmah D, Dai DQ, Nouhra E, Biersma EM, R\u00e4hn E, Cameron E, De Crop E, Otsing E, Davydov E, Albornoz F, Brearley F, Buegger F, Zahn G, Bonito G, Hiiesalu I, Barrio I, Heilmann-Clausen J, Ankuda J, Dole\u017eal J, Kupagme J, Maci\u00e1-Vicente J, Fovo JD, Geml J, Alatalo J, Alvarez-Manjarrez J, P\u00f5ldmaa K, Runnel K, Adamson K, Br\u00e5then KA, Pritsch K, Issifou KT, Armolaitis K, Hyde K, Newsham KK, Panksep K, Lateef AA, Hansson L, Lamit L, Saba M, Tuomi M, Gryzenhout M, Bauters M, Piepenbring M, Wijayawardene NN, Yorou N, Kurina O, Mortimer P, Meidl P, Kohout P, Puusepp R, Drenkhan R, Garibay-Orijel R, Godoy R, Alkahtani S, Rahimlou S, Dudov S, P\u00f5lme S, Ghosh S, Mundra S, Ahmed T, Netherway T, Henkel T, Roslin T, Nteziryayo V, Fedosov V, Onipchenko V, Yasanthika WAE, Lim Y, Van Nuland M, Soudzilovskaia N, Antonelli A., K\u00f5ljalg, U., Abarenkov, K., Tedersoo, L., 2023. Connecting the multiple dimensions of global soil fungal diversity. Sci Adv 9. https:\/\/doi.org\/10.1126\/SCIADV.ADJ8016","DOI":"10.1126\/SCIADV.ADJ8016"},{"key":"1204_CR63","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/j.foreco.2007.01.021","volume":"241","author":"D Muleta","year":"2007","unstructured":"Muleta D, Assefa F, Nemomissa S, Granhall U (2007) Composition of coffee shade tree species and density of Indigenous arbuscular mycorrhizal fungi (AMF) spores in Bonga natural coffee forest, Southwestern Ethiopia. Ecol Manage 241:145\u2013154. https:\/\/doi.org\/10.1016\/j.foreco.2007.01.021","journal-title":"Ecol Manage"},{"key":"1204_CR62","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1007\/s00374-007-0261-3","volume":"44","author":"D Muleta","year":"2008","unstructured":"Muleta D, Assefa F, Nemomissa S, Granhall U (2008) Distribution of arbuscular mycorrhizal fungi spores in soils of smallholder agroforestry and monocultural coffee systems in Southwestern Ethiopia. Biol Fertil Soils 44:653\u2013659. https:\/\/doi.org\/10.1007\/s00374-007-0261-3","journal-title":"Biol Fertil Soils"},{"key":"1204_CR64","doi-asserted-by":"publisher","first-page":"260","DOI":"10.1111\/j.1574-6941.2008.00475.x","volume":"64","author":"DL Mummey","year":"2008","unstructured":"Mummey DL, Rillig MC (2008) Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland. FEMS Microbiol Ecol 64:260\u2013270. https:\/\/doi.org\/10.1111\/j.1574-6941.2008.00475.x","journal-title":"FEMS Microbiol Ecol"},{"key":"1204_CR65","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1038\/s41579-018-0116-y","volume":"17","author":"RH Nilsson","year":"2019","unstructured":"Nilsson RH, Anslan S, Bahram M, Wurzbacher C, Baldrian P, Tedersoo L (2019) Mycobiome diversity: high-throughput sequencing and identification of fungi. Nat Rev Microbiol 17:95\u2013109. https:\/\/doi.org\/10.1038\/s41579-018-0116-y","journal-title":"Nat Rev Microbiol"},{"issue":"6 31","key":"1204_CR66","doi-asserted-by":"publisher","first-page":"655","DOI":"10.1007\/S00572-021-01054-1","volume":"31","author":"PA Noceto","year":"2021","unstructured":"Noceto PA, Bettenfeld P, Boussageon R, H\u00e9rich\u00e9 M, Sportes A, van Tuinen D, Courty PE, Wipf D (2021) Arbuscular mycorrhizal fungi, a key symbiosis in the development of quality traits in crop production, alone or combined with plant growth-promoting bacteria. Mycorrhiza 2021 31(6 31):655\u2013669. https:\/\/doi.org\/10.1007\/S00572-021-01054-1","journal-title":"Mycorrhiza 2021"},{"key":"1204_CR67","doi-asserted-by":"publisher","first-page":"2816","DOI":"10.1128\/AEM.69.5.2816-2824.2003\/ASSET\/988AD910-406B-4F73-A1E8-1C5D405C7811\/ASSETS\/GRAPHIC\/AM0531797003.JPEG","volume":"69","author":"F Oehl","year":"2003","unstructured":"Oehl F, Sieverding E, Ineichen K, M\u00e4der P, Boller T, Wiemken A (2003) Impact of land use intensity on the species diversity of arbuscular mycorrhizal fungi in agroecosystems of central Europe. Appl Environ Microbiol 69:2816\u20132824. https:\/\/doi.org\/10.1128\/AEM.69.5.2816-2824.2003\/ASSET\/988AD910-406B-4F73-A1E8-1C5D405C7811\/ASSETS\/GRAPHIC\/AM0531797003.JPEG","journal-title":"Appl Environ Microbiol"},{"key":"1204_CR68","unstructured":"Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Szoecs E, Wagner H (2018) Vegan: community ecology package"},{"key":"1204_CR69","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1111\/j.1469-8137.2010.03334.x","volume":"188","author":"M \u00d6pik","year":"2010","unstructured":"\u00d6pik M, Vanatoa A, Vanatoa E, Moora M, Davison J, Kalwij JM, Reier \u00dc, Zobel M (2010) The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytol 188:223\u2013241. https:\/\/doi.org\/10.1111\/j.1469-8137.2010.03334.x","journal-title":"New Phytol"},{"key":"1204_CR70","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1016\/j.tim.2006.04.007","volume":"14","author":"C Pedr\u00f3s-Ali\u00f3","year":"2006","unstructured":"Pedr\u00f3s-Ali\u00f3 C (2006) Marine microbial diversity: can it be determined? Trends Microbiol 14:257\u2013263. https:\/\/doi.org\/10.1016\/j.tim.2006.04.007","journal-title":"Trends Microbiol"},{"key":"1204_CR71","doi-asserted-by":"publisher","first-page":"1633","DOI":"10.5194\/HESS-11-1633-2007","volume":"11","author":"MC Peel","year":"2007","unstructured":"Peel MC, Finlayson BL, McMahon TA (2007) Updated world map of the K\u00f6ppen-Geiger climate classification. Hydrol Earth Syst Sci 11:1633\u20131644. https:\/\/doi.org\/10.5194\/HESS-11-1633-2007","journal-title":"Hydrol Earth Syst Sci"},{"key":"1204_CR72","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/S13593-020-00642-3\/TABLES\/4","volume":"40","author":"K Piato","year":"2020","unstructured":"Piato K, Lefort F, Sub\u00eda C, Caicedo C, Calder\u00f3n D, Pico J, Norgrove L (2020) Effects of shade trees on robusta coffee growth, yield and quality. A meta-analysis. Agron Sustain Dev 40:1\u201313. https:\/\/doi.org\/10.1007\/S13593-020-00642-3\/TABLES\/4","journal-title":"Agron Sustain Dev"},{"key":"1204_CR73","doi-asserted-by":"publisher","first-page":"555","DOI":"10.1007\/S10457-016-0030-0\/FIGURES\/6","volume":"92","author":"RH Posada","year":"2018","unstructured":"Posada RH, S\u00e1nchez de Prager M, Heredia-Abarca G, Sieverding E (2018) Effects of soil physical and chemical parameters, and farm management practices on arbuscular mycorrhizal fungi communities and diversities in coffee plantations in Colombia and Mexico. Agroforest Syst 92:555\u2013574. https:\/\/doi.org\/10.1007\/S10457-016-0030-0\/FIGURES\/6","journal-title":"Agroforest Syst"},{"key":"1204_CR75","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-1-4020-6547-7\/COVER","volume":"29","author":"NH Ravindranath","year":"2008","unstructured":"Ravindranath NH, Ostwald M (2008) Carbon inventory methods: handbook for greenhouse gas inventory, carbon mitigation and Roundwood production projects. Adv Global Change Res 29:1\u2013304. https:\/\/doi.org\/10.1007\/978-1-4020-6547-7\/COVER","journal-title":"Adv Global Change Res"},{"key":"1204_CR76","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1007\/S13199-010-0089-8","volume":"52","author":"M Raviv","year":"2010","unstructured":"Raviv M (2010) The use of mycorrhiza in organically-grown crops under semi arid conditions: A review of benefits, constraints and future challenges. Symbiosis 52:65\u201374. https:\/\/doi.org\/10.1007\/S13199-010-0089-8","journal-title":"Symbiosis"},{"key":"1204_CR77","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1016\/J.ECOCOM.2017.07.003","volume":"31","author":"C Ricotta","year":"2017","unstructured":"Ricotta C, Podani J (2017) On some properties of the Bray-Curtis dissimilarity and their ecological meaning. Ecol Complex 31:201\u2013205. https:\/\/doi.org\/10.1016\/J.ECOCOM.2017.07.003","journal-title":"Ecol Complex"},{"key":"1204_CR78","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1111\/j.1469-8137.2006.01750.x","volume":"171","author":"MC Rillig","year":"2006","unstructured":"Rillig MC, Mummey DL (2006) Mycorrhizas and soil structure. New Phytol 171:41\u201353. https:\/\/doi.org\/10.1111\/j.1469-8137.2006.01750.x","journal-title":"New Phytol"},{"key":"1204_CR79","doi-asserted-by":"crossref","unstructured":"Robertson G, Coleman D, Bledsoe C, Sollins P (1999) Standard methods in long term ecological research","DOI":"10.1093\/oso\/9780195120837.001.0001"},{"key":"1204_CR80","doi-asserted-by":"publisher","first-page":"1340","DOI":"10.1038\/ISMEJ.2010.58","volume":"4","author":"J Rousk","year":"2010","unstructured":"Rousk J, B\u00e5\u00e5th E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340\u20131351. https:\/\/doi.org\/10.1038\/ISMEJ.2010.58","journal-title":"ISME J"},{"key":"1204_CR81","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1111\/j.1744-697x.2005.00023.x","volume":"51","author":"K Sato","year":"2005","unstructured":"Sato K, Suyama Y, Saito M, Sugawara K (2005) A new primer for discrimination of arbuscular mycorrhizal fungi with polymerase chain reaction-denature gradient gel electrophoresis. Grassl Sci 51:179\u2013181. https:\/\/doi.org\/10.1111\/j.1744-697x.2005.00023.x","journal-title":"Grassl Sci"},{"key":"1204_CR82","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1590\/S1677-04202006000100010","volume":"18","author":"MDC Silva","year":"2006","unstructured":"Silva MDC, V\u00e1rzea V, Guerra-Guimar\u00e3es L, Azinheira HG, Fernandez D, Petitot AS, Bertrand B, Lashermes P, Nicole M (2006) Coffee resistance to the main diseases: leaf rust and coffee berry disease. Braz J Plant Physiol 18:119\u2013147. https:\/\/doi.org\/10.1590\/S1677-04202006000100010","journal-title":"Braz J Plant Physiol"},{"key":"1204_CR83","doi-asserted-by":"publisher","first-page":"694","DOI":"10.2136\/SSSAJ2008.0015BR","volume":"73","author":"JE Smith","year":"2009","unstructured":"Smith JE (2009) Mycorrhizal symbiosis (Third Edition). Soil Sci Soc Am J 73:694\u2013694. https:\/\/doi.org\/10.2136\/SSSAJ2008.0015BR","journal-title":"Soil Sci Soc Am J"},{"key":"1204_CR84","unstructured":"Smith S, Read D (2008) Mycorrhizal symbiosis"},{"key":"1204_CR85","doi-asserted-by":"publisher","first-page":"1955","DOI":"10.1023\/a:1025695032113","volume":"29","author":"D Strack","year":"2003","unstructured":"Strack D, Fester T, Hause B, Schliemann W, Walter MH (2003) Arbuscular mycorrhiza: biological, chemical and molecular aspects. J Chem Ecol 29:1955\u20131979. https:\/\/doi.org\/10.1023\/a:1025695032113","journal-title":"J Chem Ecol"},{"key":"1204_CR87","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1111\/j.1469-8137.2010.03373.x","volume":"188","author":"L Tedersoo","year":"2010","unstructured":"Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, K\u00f5ljalg U (2010) 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188:291\u2013301. https:\/\/doi.org\/10.1111\/j.1469-8137.2010.03373.x","journal-title":"New Phytol"},{"key":"1204_CR86","doi-asserted-by":"publisher","unstructured":"Tedersoo L, Bahram M, P\u00f5lme S, K\u00f5ljalg U, Yorou NS, Wijesundera R, Ruiz LV, Vasco-Palacios AM, Thu PQ, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, Riit T, Ratkowsky D, Pritsch K, P\u00f5ldmaa K, Piepenbring M, Phosri C, Peterson M, Parts K, P\u00e4rtel K, Otsing E, Nouhra E, Njouonkou AL, Nilsson RH, Morgado LN, Mayor J, May TW, Majuakim L, Lodge DJ, Lee S, Larsson KH, Kohout P, Hosaka K, Hiiesalu I, Henkel TW, Harend H, Guo LD, Greslebin A, Grelet G, Geml J, Gates G, Dunstan W, Dunk C, Drenkhan R, Dearnaley J, De Kesel A, Dang T, Chen X, Buegger F, Brearley FQ, Bonito G, Anslan S, Abell S, Abarenkov K (2014) Global diversity and geography of soil fungi. Science (1979) 346, 1256688. https:\/\/doi.org\/10.1126\/SCIENCE.1256688\/SUPPL_FILE\/TEDERSOO-SM.PDF","DOI":"10.1126\/SCIENCE.1256688\/SUPPL_FILE\/TEDERSOO-SM.PDF"},{"key":"1204_CR88","doi-asserted-by":"publisher","first-page":"671","DOI":"10.1038\/nature01014","volume":"418","author":"D Tilman","year":"2002","unstructured":"Tilman D, Cassman KG, Matson PA, Naylor R, Polasky S (2002) Agricultural sustainability and intensive production practices. Nature 418:671\u2013677. https:\/\/doi.org\/10.1038\/nature01014","journal-title":"Nature"},{"key":"1204_CR89","doi-asserted-by":"publisher","first-page":"507","DOI":"10.1046\/J.1469-8137.2002.00470.X","volume":"155","author":"KK Treseder","year":"2002","unstructured":"Treseder KK, Allen MF (2002) Direct nitrogen and phosphorus limitation of arbuscular mycorrhizal fungi: a model and field test. New Phytol 155:507\u2013515. https:\/\/doi.org\/10.1046\/J.1469-8137.2002.00470.X","journal-title":"New Phytol"},{"key":"1204_CR90","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1007\/bf00009368","volume":"147","author":"P Vaast","year":"1992","unstructured":"Vaast P, Zasoski RJ (1992) Effects of VA-mycorrhizae and nitrogen sources on rhizosphere soil characteristics, growth and nutrient acquisition of coffee seedlings (Coffea Arabica L). Plant Soil 147:31\u201339. https:\/\/doi.org\/10.1007\/bf00009368","journal-title":"Plant Soil"},{"key":"1204_CR91","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1007\/s005720050153","volume":"6","author":"P Vaast","year":"1996","unstructured":"Vaast P, Zasoski RJ, Bledsoe CS (1996) Effects of vesicular-arbuscular mycorrhizal inoculation at different soil P availabilities on growth and nutrient uptake of in vitro propagated coffee (Coffea Arabica L.) plants. Mycorrhiza 6:493\u2013497. https:\/\/doi.org\/10.1007\/s005720050153","journal-title":"Mycorrhiza"},{"key":"1204_CR92","doi-asserted-by":"publisher","first-page":"1163","DOI":"10.1890\/09-0336.1","volume":"91","author":"MGA Van Der Heijden","year":"2010","unstructured":"Van Der Heijden MGA (2010) Mycorrhizal fungi reduce nutrient loss from model grassland ecosystems. Ecology 91:1163\u20131171. https:\/\/doi.org\/10.1890\/09-0336.1","journal-title":"Ecology"},{"key":"1204_CR93","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1016\/j.mimet.2014.08.006","volume":"106","author":"M Van Geel","year":"2014","unstructured":"Van Geel M, Busschaert P, Honnay O, Lievens B (2014) Evaluation of six primer pairs targeting the nuclear rRNA Operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing. J Microbiol Methods 106:93\u2013100. https:\/\/doi.org\/10.1016\/j.mimet.2014.08.006","journal-title":"J Microbiol Methods"},{"key":"1204_CR94","unstructured":"Van Ranst E, Baert G, Ngongo M, Mafuka P (2010) Carte p\u00e9dologique de Yangambi, planchette 2: Yangambi, \u00e9chelle 1:50.000"},{"key":"1204_CR95","doi-asserted-by":"publisher","first-page":"968","DOI":"10.1111\/J.1469-8137.2010.03230.X","volume":"186","author":"E Verbruggen","year":"2010","unstructured":"Verbruggen E, R\u00f6ling WFM, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MGA (2010a) Positive effects of organic farming on below-ground mutualists: Large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytol 186:968\u2013979. https:\/\/doi.org\/10.1111\/J.1469-8137.2010.03230.X","journal-title":"New Phytol"},{"key":"1204_CR96","doi-asserted-by":"publisher","first-page":"968","DOI":"10.1111\/J.1469-8137.2010.03230.X","volume":"186","author":"E Verbruggen","year":"2010","unstructured":"Verbruggen E, R\u00f6ling WFM, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MGA (2010b) Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytol 186:968\u2013979. https:\/\/doi.org\/10.1111\/J.1469-8137.2010.03230.X","journal-title":"New Phytol"},{"key":"1204_CR97","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1098\/RSBL.2011.0874","volume":"8","author":"SD Veresoglou","year":"2012","unstructured":"Veresoglou SD, Rillig MC (2012) Suppression of fungal and nematode plant pathogens through arbuscular mycorrhizal fungi. Biol Lett 8:214\u2013217. https:\/\/doi.org\/10.1098\/RSBL.2011.0874","journal-title":"Biol Lett"},{"key":"1204_CR98","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1111\/1755-0998.12229","volume":"14","author":"M Waud","year":"2014","unstructured":"Waud M, Busschaert P, Ruyters S, Jacquemyn H, Lievens B (2014) Impact of primer choice on characterization of Orchid mycorrhizal communities using 454 pyrosequencing. Mol Ecol Resour 14:679\u2013699. https:\/\/doi.org\/10.1111\/1755-0998.12229","journal-title":"Mol Ecol Resour"},{"key":"1204_CR99","doi-asserted-by":"publisher","first-page":"1437","DOI":"10.1111\/NPH.13113","volume":"205","author":"GDA Werner","year":"2015","unstructured":"Werner GDA, Kiers ET (2015) Partner selection in the mycorrhizal mutualism. New Phytol 205:1437\u20131442. https:\/\/doi.org\/10.1111\/NPH.13113","journal-title":"New Phytol"},{"key":"1204_CR100","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1111\/J.1461-0248.2009.01303.X","volume":"12","author":"GWT Wilson","year":"2009","unstructured":"Wilson GWT, Rice CW, Rillig MC, Springer A, Hartnett DC (2009) Soil aggregation and carbon sequestration are tightly correlated with the abundance of arbuscular mycorrhizal fungi: results from long-term field experiments. Ecol Lett 12:452\u2013461. https:\/\/doi.org\/10.1111\/J.1461-0248.2009.01303.X","journal-title":"Ecol Lett"},{"key":"1204_CR101","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-24537-2","author":"Q Zhao","year":"2018","unstructured":"Zhao Q, Xiong W, Xing Y, Sun Y, Lin X, Dong Y (2018) Sci Rep 2018 8(1 8):1\u201311. https:\/\/doi.org\/10.1038\/s41598-018-24537-2. Long-Term Coffee Monoculture Alters Soil Chemical Properties and Microbial Communities"}],"container-title":["Mycorrhiza"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00572-025-01204-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00572-025-01204-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00572-025-01204-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,5,13]],"date-time":"2025-05-13T09:38:46Z","timestamp":1747129126000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00572-025-01204-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,4]]},"references-count":101,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2025,4]]}},"alternative-id":["1204"],"URL":"https:\/\/doi.org\/10.1007\/s00572-025-01204-9","relation":{"references":[{"id-type":"doi","id":"10.1038\/s41598-018-24537-2","asserted-by":"subject"}],"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-5856692\/v1","asserted-by":"object"}]},"ISSN":["0940-6360","1432-1890"],"issn-type":[{"value":"0940-6360","type":"print"},{"value":"1432-1890","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,4]]},"assertion":[{"value":"18 January 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 March 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 April 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"During the preparation of this manuscript, the authors used ChatGPT-4o and Grammarly for LLM- or AI-assisted copy editing, including improvements to grammar, spelling, punctuation, readability, and style. These tools were not used for autonomous content creation. All text was originally written by the authors, who reviewed and approved all edits. The authors take full responsibility for the final content in accordance with the journal\u2019s guidelines.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Generative AI and AI-assisted technologies in the writing process"}}],"article-number":"30"}}