{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T03:14:27Z","timestamp":1740107667356,"version":"3.37.3"},"reference-count":29,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2016,10,19]],"date-time":"2016-10-19T00:00:00Z","timestamp":1476835200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100002261","name":"Russian Foundation for Basic Research","doi-asserted-by":"publisher","award":["16-15-10238"],"award-info":[{"award-number":["16-15-10238"]}],"id":[{"id":"10.13039\/501100002261","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2017,2]]},"DOI":"10.1007\/s00705-016-3120-4","type":"journal-article","created":{"date-parts":[[2016,10,19]],"date-time":"2016-10-19T10:25:31Z","timestamp":1476872731000},"page":"379-390","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":14,"title":["Predominance of CRF63_02A1 and multiple patterns of unique recombinant forms of CRF63_A1 among individuals with newly diagnosed HIV-1 infection in Kemerovo Oblast, Russia"],"prefix":"10.1007","volume":"162","author":[{"given":"Natalya M.","family":"Gashnikova","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Darya P.","family":"Zyryanova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ekaterina M.","family":"Astakhova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vladimir V.","family":"Ivlev","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria P.","family":"Gashnikova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Natalya V.","family":"Moskaleva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sergey S.","family":"Aikin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tatyana N.","family":"Bulatova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sergey V.","family":"Pustylnikov","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Evgeny F.","family":"Bocharov","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aleksey V.","family":"Totmenin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,10,19]]},"reference":[{"key":"3120_CR1","unstructured":"Global AIDS Update, UNAIDS report (2016)"},{"key":"3120_CR2","unstructured":"UNAIDS \u201cThe Gap Report\u201d (2014)"},{"key":"3120_CR3","unstructured":"Online database of Russian Federal State Statistics Service (2016) Number of permanent residents of Kemerovo Oblast on 01.01.2015. http:\/\/cbsd.gks.ru\/ . Accessed 15 July 2016"},{"issue":"4","key":"3120_CR4","first-page":"51","volume":"3","author":"AN Kolomeyets","year":"2011","unstructured":"Kolomeyets AN, Dovgopoliuk YS, Sergeeva IV (2011) [in Russian] Drug-resistant HIV-1 prevalence in Siberian Federal Region. HIV Infect Immune Disorders 3(4):51\u201355","journal-title":"HIV Infect Immune Disorders"},{"issue":"12","key":"3120_CR5","doi-asserted-by":"crossref","first-page":"1599","DOI":"10.1089\/aid.2007.0166","volume":"23","author":"MM Thomson","year":"2007","unstructured":"Thomson MM, De Parga EV, Vinogradova A, Sierra M, Yakovlev A, Rakhmanova A, Delgado E, Casado G, Munoz M, Carmona R (2007) New insights into the origin of the HIV type 1 subtype A epidemic in former Soviet Union\u2019s countries derived from sequence analyses of preepidemically transmitted viruses. AIDS Res Human Retrovir 23(12):1599\u20131604","journal-title":"AIDS Res Human Retrovir"},{"issue":"10","key":"3120_CR6","doi-asserted-by":"crossref","first-page":"1340","DOI":"10.1089\/aid.2011.0393","volume":"28","author":"A Fernandez-Garcia","year":"2012","unstructured":"Fernandez-Garcia A, Revilla A, Vazquez-de Parga E, Vinogradova A, Rakhmanova A, Karamov E, Carrera C, Delgado E, Perez-Alvarez L, Najera R (2012) The analysis of near full-length genome sequences of HIV type 1 subtype A viruses from Russia supports the monophyly of major intrasubtype clusters. AIDS Res Human Retrovir 28(10):1340\u20131343","journal-title":"AIDS Res Human Retrovir"},{"key":"3120_CR7","unstructured":"Bogachev VV, Totmenin AV, Baryshev PB, Mescheryakova YV, Chernousova NY, Gashnikova NM (2012) [in Russian] Molecular and genetic characteristics of HIV-1 variants subtypes A and B isolated in Novosibirsk Oblast area. J Microbiol Epidemiol Immunobiol [Russian] 6:45\u201352"},{"key":"3120_CR8","unstructured":"Gashnikova NM, Safronov PF, Nikonorova YV, Unagaeva NV, Lapteva TA, Bogachev VV, Chernousova NY (2011) [in Russian] Properties of CRF02_AG HIV-1 isolates circulating in the Novosibirsk Oblast area. J Microbiol Epidemiol Immunobiol [Russian] 3:38\u201343"},{"issue":"12","key":"3120_CR9","doi-asserted-by":"crossref","first-page":"2335","DOI":"10.1007\/s00705-012-1442-4","volume":"157","author":"PB Baryshev","year":"2012","unstructured":"Baryshev PB, Bogachev VV, Gashnikova NM (2012) Genetic characterization of an isolate of HIV type 1 AG recombinant form circulating in Siberia, Russia. Arch Virol 157(12):2335\u20132341","journal-title":"Arch Virol"},{"issue":"6","key":"3120_CR10","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1089\/aid.2013.0196","volume":"30","author":"PB Baryshev","year":"2014","unstructured":"Baryshev PB, Bogachev VV, Gashnikova NM (2014) HIV-1 genetic diversity in Russia: CRF63_02A1, a new HIV type 1 genetic variant spreading in Siberia. AIDS Res Human Retrovir 30(6):592\u2013597","journal-title":"AIDS Res Human Retrovir"},{"issue":"4","key":"3120_CR11","doi-asserted-by":"crossref","first-page":"456","DOI":"10.1089\/aid.2014.0375","volume":"31","author":"NM Gashnikova","year":"2015","unstructured":"Gashnikova NM, Bogachev VV, Baryshev PB, Totmenin AV, Gashnikova MP, Kazachinskaya AG, Ismailova TN, Stepanova SA, Chernov AS, Mikheev VN (2015) A rapid expansion of HIV-1 CRF63_02A1 among newly diagnosed HIV-infected individuals in the Tomsk region, Russia. AIDS Res Human Retrovir 31(4):456\u2013460","journal-title":"AIDS Res Human Retrovir"},{"issue":"24","key":"3120_CR12","doi-asserted-by":"crossref","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","volume":"25","author":"JD Thompson","year":"1997","unstructured":"Thompson JD, Gibson TJ, Fdr Plewniak, Fo Jeanmougin, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876\u20134882","journal-title":"Nucleic Acids Res"},{"key":"3120_CR13","unstructured":"Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT. In: Nucleic acids symposium series, pp 95\u201398"},{"issue":"12","key":"3120_CR14","doi-asserted-by":"crossref","first-page":"2725","DOI":"10.1093\/molbev\/mst197","volume":"30","author":"K Tamura","year":"2013","unstructured":"Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725\u20132729","journal-title":"Mol Biol Evol"},{"issue":"1","key":"3120_CR15","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1128\/JVI.73.1.152-160.1999","volume":"73","author":"KS Lole","year":"1999","unstructured":"Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73(1):152\u2013160","journal-title":"J Virol"},{"issue":"3","key":"3120_CR16","doi-asserted-by":"crossref","first-page":"e4724","DOI":"10.1371\/journal.pone.0004724","volume":"4","author":"DE Bennett","year":"2009","unstructured":"Bennett DE, Camacho RJ, Otelea D, Kuritzkes DR, Fleury H, Kiuchi M, Heneine W, Kantor R, Jordan MR, Schapiro JM (2009) Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PloS One 4(3):e4724","journal-title":"PloS One"},{"issue":"3","key":"3120_CR17","first-page":"143","volume":"10","author":"AJ Low","year":"2007","unstructured":"Low AJ, Swenson LC, Harrigan PR (2007) HIV coreceptor phenotyping in the clinical setting. AIDS Rev 10(3):143\u2013151","journal-title":"AIDS Rev"},{"issue":"2","key":"3120_CR18","first-page":"75","volume":"9","author":"DM Tebit","year":"2007","unstructured":"Tebit DM, Nankya I, Arts EJ, Gao Y (2007) HIV diversity, recombination and disease progression: how does fitness \u201cfit\u201d into the puzzle. AIDS Rev 9(2):75\u201387","journal-title":"AIDS Rev"},{"key":"3120_CR19","doi-asserted-by":"crossref","first-page":"S3","DOI":"10.1097\/00002030-200216004-00002","volume":"16","author":"R Najera","year":"2002","unstructured":"Najera R, Delgado E, Perez-Alvarez L, Thomson MM (2002) Genetic recombination and its role in the development of the HIV-1 pandemic. AIDS 16:S3\u2013S16","journal-title":"AIDS"},{"issue":"1S","key":"3120_CR20","doi-asserted-by":"crossref","first-page":"4","DOI":"10.4081\/idr.2013.s1.e4","volume":"5","author":"KA Lau","year":"2013","unstructured":"Lau KA, Wong JJL (2013) Current trends of HIV recombination worldwide. Infect Dis Rep 5(1S):4","journal-title":"Infect Dis Rep"},{"issue":"11","key":"3120_CR21","doi-asserted-by":"crossref","first-page":"1371","DOI":"10.1097\/QAD.0b013e328347c060","volume":"25","author":"M Leoz","year":"2011","unstructured":"Leoz M, Chaix M-L, Delaugerre C, Rivoisy C, Meyer L, Rouzioux C, Simon F, Plantier J-C (2011) Circulation of multiple patterns of unique recombinant forms B\/CRF02_AG in France: precursor signs of the emergence of an upcoming CRF B\/02. Aids 25(11):1371\u20131377","journal-title":"Aids"},{"key":"3120_CR22","doi-asserted-by":"crossref","unstructured":"Giuliani M, Santoro MM, Lo Presti A, Cella E, Scognamiglio P, Lai A, Latini A, Fabeni L, Gori C, Pinnetti C (2013) Circulation of HIV-1 CRF02_AG among MSM population in central Italy: a molecular epidemiology-based study. BioMed Res Int","DOI":"10.1155\/2013\/810617"},{"key":"3120_CR23","doi-asserted-by":"crossref","unstructured":"Mir D, Jung M, Delatorre E, Vidal N, Peeters M, Bello G (2016) Phylodynamics of the major HIV-1 CRF02_AG African lineages and its global dissemination. Infect Genet Evol","DOI":"10.1016\/j.meegid.2016.05.017"},{"issue":"12","key":"3120_CR24","doi-asserted-by":"crossref","first-page":"1230","DOI":"10.1089\/aid.2015.0183","volume":"31","author":"E Delatorre","year":"2015","unstructured":"Delatorre E, Velasco-De-Castro CA, Pilotto JH, Couto-Fernandez JC, Bello G, Morgado MG (2015) Short communication: reassessing the origin of the HIV-1 CRF02_AG lineages circulating in Brazil. AIDS Res Human Retrovir 31(12):1230\u20131237","journal-title":"AIDS Res Human Retrovir"},{"key":"3120_CR25","doi-asserted-by":"crossref","unstructured":"Laga V, Lapovok I, Kazennova E, Ismailova A, Beisheeva N, Asybalieva N, Glushchenko N, Bobkova M (2015) The genetic variability of HIV-1 in Kyrgyzstan: the spread of CRF02_AG and subtype A1 recombinants. J HIV AIDS 1(2)","DOI":"10.16966\/2380-5536.106"},{"issue":"8","key":"3120_CR26","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1089\/aid.2013.0194","volume":"30","author":"E Kazennova","year":"2014","unstructured":"Kazennova E, Laga V, Lapovok I, Glushchenko N, Neshumaev D, Vasilyev A, Bobkova M (2014) HIV-1 genetic variants in the Russian Far East. AIDS Res Human Retrovir 30(8):742\u2013752","journal-title":"AIDS Res Human Retrovir"},{"issue":"8","key":"3120_CR27","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1089\/aid.2013.0291","volume":"30","author":"I Lapovok","year":"2014","unstructured":"Lapovok I, Kazennova E, Laga V, Vasilyev A, Utegenova A, Abishev A, Dzissyuk N, Tukeev M, Bobkova M (2014) Short communication: molecular epidemiology of HIV type 1 infection in Kazakhstan: CRF02_AG prevalence is increasing in the southeastern provinces. AIDS Res Human Retrovir 30(8):769\u2013774","journal-title":"AIDS Res Human Retrovir"},{"issue":"1","key":"3120_CR28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1743-422X-10-29","volume":"10","author":"M Tongo","year":"2013","unstructured":"Tongo M, Martin DP, Zembe L, Mpoudi-Ngole E, Williamson C, Burgers WA (2013) Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic. Virol J 10(1):1","journal-title":"Virol J"},{"key":"3120_CR29","doi-asserted-by":"crossref","unstructured":"Esbjornsson J, Mansson F, Martinez-Arias W, Vincic E, Biague AJ, da Silva ZJ, Fenyo EM, Norrgren H, Medstrand P (2010) Frequent CXCR4 tropism of HIV-1 subtype A and CRF02_AG during late-stage disease-indication of an evolving epidemic in West Africa. Retrovirology 7 (1):1","DOI":"10.1186\/1742-4690-7-23"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-016-3120-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00705-016-3120-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-016-3120-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,10]],"date-time":"2022-07-10T18:30:15Z","timestamp":1657477815000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00705-016-3120-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,10,19]]},"references-count":29,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2017,2]]}},"alternative-id":["3120"],"URL":"https:\/\/doi.org\/10.1007\/s00705-016-3120-4","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"type":"print","value":"0304-8608"},{"type":"electronic","value":"1432-8798"}],"subject":[],"published":{"date-parts":[[2016,10,19]]}}}