{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T18:36:25Z","timestamp":1761676585592},"reference-count":39,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2017,10,20]],"date-time":"2017-10-20T00:00:00Z","timestamp":1508457600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"name":"European Foundation Initiative for African Research into Neglected Tropical Diseases (EFINTD)","award":["89539"],"award-info":[{"award-number":["89539"]}]},{"name":"Mozambique\/South Africa Research Cooperative Programme","award":["86822"],"award-info":[{"award-number":["86822"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2018,1]]},"DOI":"10.1007\/s00705-017-3575-y","type":"journal-article","created":{"date-parts":[[2017,10,20]],"date-time":"2017-10-20T02:21:52Z","timestamp":1508466112000},"page":"153-165","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":18,"title":["Rotavirus A strains obtained from children with acute gastroenteritis in Mozambique, 2012-2013: G and P genotypes and phylogenetic analysis of VP7 and partial VP4 genes"],"prefix":"10.1007","volume":"163","author":[{"given":"Eva Dora","family":"Jo\u00e3o","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amy","family":"Strydom","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hester G.","family":"O\u2019Neill","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Assa","family":"Cuamba","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marta","family":"Cassocera","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sozinho","family":"Ac\u00e1cio","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"In\u00e1cio","family":"Mandomando","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lithabiso","family":"Motanyane","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicola","family":"Page","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nilsa","family":"de Deus","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2017,10,20]]},"reference":[{"key":"3575_CR1","doi-asserted-by":"publisher","first-page":"208","DOI":"10.1093\/cid\/civ1016","volume":"62","author":"JE Tate","year":"2016","unstructured":"Tate JE, Ngabo F, Donnen P et al (2016) Effectiveness of pentavalent rotavirus vaccine under conditions of routine use in Rwanda. 62:208\u2013212. doi: 10.1093\/cid\/civ1016","journal-title":"Effectiveness of pentavalent rotavirus vaccine under conditions of routine use in Rwanda."},{"key":"3575_CR2","doi-asserted-by":"publisher","first-page":"1939","DOI":"10.1053\/j.gastro.2009.02.076","volume":"136","author":"HB Greenberg","year":"2009","unstructured":"Greenberg HB, Estes MK (2009) Rotaviruses: from pathogenesis to vaccination. Gastroenterology 136:1939\u20131951. doi: 10.1053\/j.gastro.2009.02.076","journal-title":"Gastroenterology"},{"key":"3575_CR3","doi-asserted-by":"publisher","first-page":"1177","DOI":"10.1007\/s00705-012-1273-3","volume":"157","author":"J Matthijnssens","year":"2012","unstructured":"Matthijnssens J, Otto PH, Ciarlet M et al (2012) VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 157:1177\u20131182. doi: 10.1007\/s00705-012-1273-3","journal-title":"Arch Virol"},{"key":"3575_CR4","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1016\/j.meegid.2016.12.002","volume":"48","author":"K B\u00e1nyai","year":"2017","unstructured":"B\u00e1nyai K, Kemenesi G, Budinski I et al (2017) Candidate new rotavirus species in Schreiber\u2019s bats, Serbia. Infect Genet Evol 48:19\u201326. doi: 10.1016\/j.meegid.2016.12.002","journal-title":"Infect Genet Evol"},{"key":"3575_CR5","doi-asserted-by":"publisher","first-page":"660","DOI":"10.3201\/eid2104.141370","volume":"21","author":"E Mihalov-Kov\u00e1cs","year":"2015","unstructured":"Mihalov-Kov\u00e1cs E, Gell\u00e9rt \u00c1, Marton S et al (2015) Candidate new rotavirus species in sheltered ogs, Hungary. Emerg Infect Dis 21:660\u2013663. doi: 10.3201\/eid2104.141370","journal-title":"Emerg Infect Dis"},{"key":"3575_CR6","doi-asserted-by":"publisher","first-page":"426","DOI":"10.1016\/j.coviro.2012.04.007","volume":"2","author":"J Matthijnssens","year":"2012","unstructured":"Matthijnssens J, Van Ranst M (2012) Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2:426\u2013433. doi: 10.1016\/j.coviro.2012.04.007","journal-title":"Curr Opin Virol"},{"key":"3575_CR7","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1099\/vir.0.047381-0","volume":"94","author":"E Trojnar","year":"2013","unstructured":"Trojnar E, Sachsenr\u00f6der J, Twardziok S et al (2013) Identification of an avian group a rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136\u2013142. doi: 10.1099\/vir.0.047381-0","journal-title":"J Gen Virol"},{"key":"3575_CR8","doi-asserted-by":"publisher","first-page":"11106","DOI":"10.1128\/JVI.01402-08","volume":"82","author":"EM Heiman","year":"2008","unstructured":"Heiman EM, Mcdonald SM, Barro M et al (2008) Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82:11106\u201311116. doi: 10.1128\/JVI.01402-08","journal-title":"J Virol"},{"key":"3575_CR9","doi-asserted-by":"publisher","first-page":"2431","DOI":"10.1093\/molbev\/msq137","volume":"27","author":"J Matthijnssens","year":"2010","unstructured":"Matthijnssens J, Heylen E, Zeller M et al (2010) Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol Biol Evol 27:2431\u20132436. doi: 10.1093\/molbev\/msq137","journal-title":"Mol Biol Evol"},{"key":"3575_CR10","doi-asserted-by":"publisher","first-page":"S34","DOI":"10.1086\/653555","volume":"202","author":"S Todd","year":"2010","unstructured":"Todd S, Page NA, Steele AD et al (2010) Rotavirus strain types circulating in Africa: review of studies published during 1997\u20132006. J Infect Dis 202:S34\u2013S42. doi: 10.1086\/653555","journal-title":"J Infect Dis"},{"key":"3575_CR11","doi-asserted-by":"publisher","first-page":"1969","DOI":"10.1016\/S0140-6736(10)60549-1","volume":"375","author":"RE Black","year":"2010","unstructured":"Black RE, Cousens S, Johnson HL et al (2010) Global, regional, and national causes of child mortality in 2008: a systematic analysis. Lancet 375:1969\u20131987. doi: 10.1016\/S0140-6736(10)60549-1","journal-title":"Lancet"},{"key":"3575_CR12","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1016\/S0140-6736(13)60844-2","volume":"382","author":"KL Kotloff","year":"2013","unstructured":"Kotloff KL, Nataro JP, Blackwelder WC et al (2013) Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study. Lancet 382:209\u2013222. doi: 10.1016\/S0140-6736(13)60844-2","journal-title":"Lancet"},{"key":"3575_CR13","doi-asserted-by":"publisher","first-page":"1751","DOI":"10.1002\/jmv.24531","volume":"88","author":"JS Langa","year":"2016","unstructured":"Langa JS, Thompson R, Arnaldo P et al (2016) Epidemiology of rotavirus A diarrhea in Ch\u00f3kw\u00e8, Southern Mozambique, from February to September, 2011. J Med Virol 88:1751\u20131758. doi: 10.1002\/jmv.24531","journal-title":"J Med Virol"},{"key":"3575_CR14","doi-asserted-by":"publisher","DOI":"10.1093\/tropej\/fmx032","author":"N de Deus","year":"2017","unstructured":"de Deus N, Jo\u00e3o E, Cuamba A et al (2017) Epidemiology of rotavirus infection in children from a rural and urban area, in Maputo, Southern Mozambique, before vaccine introduction. J Trop Pediatr. doi: 10.1093\/tropej\/fmx032 (epub ahead of print)","journal-title":"J Trop Pediatr"},{"key":"3575_CR15","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1128\/JCM.28.2.276-282.1990","volume":"28","author":"V Gouvea","year":"1990","unstructured":"Gouvea V, Glass RI, Woods P et al (1990) Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276\u2013282","journal-title":"J Clin Microbiol"},{"key":"3575_CR16","doi-asserted-by":"crossref","first-page":"1365","DOI":"10.1128\/JCM.30.6.1365-1373.1992","volume":"30","author":"JR Gentsch","year":"1992","unstructured":"Gentsch JR, Glass RI, Woods P et al (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365\u20131373","journal-title":"J Clin Microbiol"},{"key":"3575_CR17","doi-asserted-by":"publisher","first-page":"1413","DOI":"10.1002\/jmv.20872","volume":"79","author":"I Banerjee","year":"2007","unstructured":"Banerjee I, Ramani S, Primrose B et al (2007) Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. J Med Virol 79:1413\u20131421. doi: 10.1002\/jmv.20872","journal-title":"J Med Virol"},{"key":"3575_CR18","doi-asserted-by":"crossref","first-page":"898","DOI":"10.1128\/JCM.38.2.898-901.2000","volume":"38","author":"M Iturriza-G\u00f3mara","year":"2000","unstructured":"Iturriza-G\u00f3mara M, Green J, Brown DWG et al (2000) Diversity within the VP4 gene of rotavirus P[8] strains: Implications for reverse transcription-PCR genotyping. J Clin Microbiol 38:898\u2013901","journal-title":"J Clin Microbiol"},{"key":"3575_CR19","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1093\/nar\/gkr859","volume":"40","author":"BE Pickett","year":"2012","unstructured":"Pickett BE, Sadat EL, Zhang Y et al (2012) ViPR: An open bioinformatics database and analysis resource for virology research. Nucleic Acids Res 40:593\u2013598. doi: 10.1093\/nar\/gkr859","journal-title":"Nucleic Acids Res"},{"key":"3575_CR20","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870\u20131874. doi: 10.1093\/molbev\/msw054","journal-title":"Mol Biol Evol"},{"key":"3575_CR21","first-page":"678","volume":"9","author":"K Tamura","year":"1992","unstructured":"Tamura K (1992) Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Mol Biol Evol 9:678\u2013687","journal-title":"Mol Biol Evol"},{"key":"3575_CR22","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1007\/BF02101694","volume":"22","author":"M Hasegawa","year":"1985","unstructured":"Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160\u2013174. doi: 10.1007\/BF02101694","journal-title":"J Mol Evol"},{"key":"3575_CR23","doi-asserted-by":"publisher","first-page":"1444","DOI":"10.1126\/science.1170481","volume":"324","author":"ST Aoki","year":"2009","unstructured":"Aoki ST, Settembre EC, Trask SD et al (2009) Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab. Science 324:1444\u20131447. doi: 10.1126\/science.1170481","journal-title":"Science"},{"key":"3575_CR24","doi-asserted-by":"publisher","first-page":"2072","DOI":"10.1016\/j.meegid.2011.09.023","volume":"11","author":"KC Jere","year":"2011","unstructured":"Jere KC, Mlera L, Page NA et al (2011) Whole genome analysis of multiple rotavirus strains from a single stool specimen using sequence-independent amplification and 454\u00ae pyrosequencing reveals evidence of intergenotype genome segment recombination. Infect Genet Evol 11:2072\u20132082. doi: 10.1016\/j.meegid.2011.09.023","journal-title":"Infect Genet Evol"},{"key":"3575_CR25","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1016\/j.vaccine.2011.09.111","volume":"30","author":"K B\u00e1nyai","year":"2012","unstructured":"B\u00e1nyai K, L\u00e1szl\u00f3 B, Duque J et al (2012) Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: Insights for understanding the impact of rotavirus vaccination programs. Vaccine 30:122\u2013130. doi: 10.1016\/j.vaccine.2011.09.111","journal-title":"Vaccine"},{"key":"3575_CR26","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1097\/INF.0000000000000174","volume":"33","author":"JM Mwenda","year":"2014","unstructured":"Mwenda JM, Tate JE, Parashar UD et al (2014) African rotavirus surveillance network. Pediatr Infect Dis J 33:S6\u2013S8. doi: 10.1097\/INF.0000000000000174","journal-title":"Pediatr Infect Dis J"},{"key":"3575_CR27","first-page":"108","volume":"12","author":"N Page","year":"2013","unstructured":"Page N, Mapuroma F, Seheri M et al (2013) Rotavirus surveillance report, South Africa, 2013. Commun Dis Surveill Bull 12:108\u2013113","journal-title":"Commun Dis Surveill Bull"},{"issue":"Suppl","key":"3575_CR28","doi-asserted-by":"publisher","first-page":"S168","DOI":"10.1086\/653577","volume":"202","author":"NA Cunliffe","year":"2010","unstructured":"Cunliffe NA, Ngwira BM, Dove W et al (2010) Epidemiology of rotavirus infection in children in Blantyre, Malawi, 1997\u20132007. J Infect Dis 202(Suppl):S168\u2013S174. doi: 10.1086\/653577","journal-title":"J Infect Dis"},{"issue":"Suppl","key":"3575_CR29","doi-asserted-by":"publisher","first-page":"S5","DOI":"10.1086\/653557","volume":"202","author":"JM Mwenda","year":"2010","unstructured":"Mwenda JM, Ntoto KM, Abebe A et al (2010) Burden and epidemiology of rotavirus diarrhea in selected African countries: preliminary results from the African Rotavirus Surveillance Network. J Infect Dis 202(Suppl):S5\u2013S11. doi: 10.1086\/653557","journal-title":"J Infect Dis"},{"key":"3575_CR30","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1007\/s00705-014-2244-7","volume":"160","author":"C Istrate","year":"2015","unstructured":"Istrate C, Sharma S, Nordgren J et al (2015) High rate of detection of G8P[6] rotavirus in children with acute gastroenteritis in S\u00e3o Tom\u00e9 and Pr\u00edncipe. Arch Virol 160:423\u2013428. doi: 10.1007\/s00705-014-2244-7","journal-title":"Arch Virol"},{"key":"3575_CR31","doi-asserted-by":"publisher","first-page":"1347","DOI":"10.1586\/erv.12.105","volume":"11","author":"J Matthijnssens","year":"2012","unstructured":"Matthijnssens J, Nakagomi O, Kirkwood CD et al (2012) Group A rotavirus universal mass vaccination: how and to what extent will selective pressure influence prevalence of rotavirus genotypes? Expert Rev Vaccines 11:1347\u20131354. doi: 10.1586\/erv.12.105","journal-title":"Expert Rev Vaccines"},{"key":"3575_CR32","doi-asserted-by":"publisher","first-page":"O702","DOI":"10.1111\/1469-0691.12612","volume":"20","author":"J Matthijnssens","year":"2014","unstructured":"Matthijnssens J, Zeller M, Heylen E et al (2014) Higher proportion of G2P[4] rotaviruses in vaccinated hospitalized cases compared with unvaccinated hospitalized cases, despite high vaccine effectiveness against heterotypic G2P[4] rotaviruses. Clin Microbiol Infect 20:O702\u2013O710. doi: 10.1111\/1469-0691.12612","journal-title":"Clin Microbiol Infect"},{"key":"3575_CR33","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0113674","volume":"9","author":"R Durmaz","year":"2014","unstructured":"Durmaz R, Kalaycioglu AT, Acar S et al (2014) Prevalence of rotavirus genotypes in children younger than 5\u00a0years of age before the introduction of a universal rotavirus vaccination program: Report of Rotavirus Surveillance in Turkey. PLoS One 9:1\u201319. doi: 10.1371\/journal.pone.0113674","journal-title":"PLoS One"},{"key":"3575_CR34","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1007\/s00705-016-3102-6","volume":"162","author":"Z Dian","year":"2016","unstructured":"Dian Z, Fan M, Wang B et al (2016) The prevalence and genotype distribution of rotavirus A infection among children with acute gastroenteritis in Kunming, China. Arch Virol 162:281\u2013285. doi: 10.1007\/s00705-016-3102-6","journal-title":"Arch Virol"},{"key":"3575_CR35","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1007\/s11262-014-1091-7","volume":"49","author":"MM Nyaga","year":"2014","unstructured":"Nyaga MM, Stucker KM, Esona MD et al (2014) Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa. Virus Genes 49:196\u2013207. doi: 10.1007\/s11262-014-1091-7","journal-title":"Virus Genes"},{"key":"3575_CR36","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1016\/j.vetmic.2012.03.040","volume":"159","author":"KC Jere","year":"2012","unstructured":"Jere KC, Mlera L, O\u2019Neill HG et al (2012) Whole genome sequence analyses of three African bovine rotaviruses reveal that they emerged through multiple reassortment events between rotaviruses from different mammalian species. Vet Microbiol 159:245\u2013250. doi: 10.1016\/j.vetmic.2012.03.040","journal-title":"Vet Microbiol"},{"key":"3575_CR37","doi-asserted-by":"publisher","first-page":"2018","DOI":"10.1002\/jmv.22207","volume":"83","author":"KC Jere","year":"2011","unstructured":"Jere KC, Mlera L, O\u2019Neill HG et al (2011) Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454(R) pyrosequencing. J Med Virol 83:2018\u20132042. doi: 10.1002\/jmv.22207","journal-title":"J Med Virol"},{"key":"3575_CR38","doi-asserted-by":"publisher","first-page":"966","DOI":"10.1128\/JCM.05590-11","volume":"50","author":"M Zeller","year":"2012","unstructured":"Zeller M, Patton JT, Heylen E et al (2012) Genetic analyses reveal differences in the VP7 and VP4 antigenic epitopes between human rotaviruses circulating in Belgium and rotaviruses in rotarix and RotaTeq. J Clin Microbiol 50:966\u2013976. doi: 10.1128\/JCM.05590-11","journal-title":"J Clin Microbiol"},{"key":"3575_CR39","doi-asserted-by":"publisher","first-page":"1693","DOI":"10.1007\/s00705-015-2439-6","volume":"160","author":"OV Morozova","year":"2015","unstructured":"Morozova OV, Sashina TA, Fomina SG, Novikova NA (2015) Comparative characteristics of the VP7 and VP4 antigenic epitopes of the rotaviruses circulating in Russia (Nizhny Novgorod) and the Rotarix and RotaTeq vaccines. Arch Virol 160:1693\u20131703. doi: 10.1007\/s00705-015-2439-6","journal-title":"Arch Virol"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00705-017-3575-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-017-3575-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-017-3575-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,10,20]],"date-time":"2020-10-20T05:04:17Z","timestamp":1603170257000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00705-017-3575-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,10,20]]},"references-count":39,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2018,1]]}},"alternative-id":["3575"],"URL":"https:\/\/doi.org\/10.1007\/s00705-017-3575-y","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"value":"0304-8608","type":"print"},{"value":"1432-8798","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,10,20]]}}}