{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,8]],"date-time":"2025-05-08T08:45:59Z","timestamp":1746693959474,"version":"3.37.3"},"reference-count":29,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2022,2,11]],"date-time":"2022-02-11T00:00:00Z","timestamp":1644537600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2022,2,11]],"date-time":"2022-02-11T00:00:00Z","timestamp":1644537600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2022,3]]},"DOI":"10.1007\/s00705-022-05386-x","type":"journal-article","created":{"date-parts":[[2022,2,11]],"date-time":"2022-02-11T16:02:41Z","timestamp":1644595361000},"page":"941-946","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["A high-resolution melting assay to differentiate a peste des petits ruminants virus vaccine strain from field isolates in Turkey"],"prefix":"10.1007","volume":"167","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7919-8643","authenticated-orcid":false,"given":"Mustafa Emin","family":"Oz","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4636-7791","authenticated-orcid":false,"given":"Emrah","family":"Torlak","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2022,2,11]]},"reference":[{"key":"5386_CR1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-3-662-45165-6_1","volume-title":"Peste des petits Ruminants virus","author":"M Munir","year":"2015","unstructured":"Munir M (2015) Peste des petits Ruminants: an introduction. In: Munir M (ed) Peste des petits Ruminants virus, 1st edn. Springer, Germany, pp 1\u20139. https:\/\/doi.org\/10.1007\/978-3-662-45165-6_1","edition":"1"},{"key":"5386_CR2","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/j.vetmic","volume":"206","author":"N Kumar","year":"2017","unstructured":"Kumar N, Barua S, Riyesh T, Tripathi BN (2017) Advances in peste des petits ruminants vaccines. Vet Microbiol 206:91\u2013101. https:\/\/doi.org\/10.1016\/j.vetmic","journal-title":"Vet Microbiol"},{"key":"5386_CR3","doi-asserted-by":"publisher","first-page":"1967","DOI":"10.1007\/s00705-019-04247-4","volume":"164","author":"GK Amarasinghe","year":"2019","unstructured":"Amarasinghe GK, Ayll\u00f3n MA, B\u00e0o Y et al (2019) Taxonomy of the order Mononegavirales: update 2019. Arch Virol 164:1967\u20131980. https:\/\/doi.org\/10.1007\/s00705-019-04247-4","journal-title":"Arch Virol"},{"key":"5386_CR4","doi-asserted-by":"publisher","first-page":"708","DOI":"10.3201\/eid0807.010471","volume":"8","author":"A Ozkul","year":"2002","unstructured":"Ozkul A, Akca Y, Alkan F, Barrett T, Karao\u011flu T, Dagalp SB, Anderson J, Yesilbag K, Cokcaliskan C, Gencay A, Burgu I (2002) Prevalence, distribution, and host range of peste des petits ruminants virus, Turkey. Emerg Infect Dis 8:708\u2013712. https:\/\/doi.org\/10.3201\/eid0807.010471","journal-title":"Emerg Infect Dis"},{"key":"5386_CR5","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/j.vetmic.2014.08.031","volume":"174","author":"KS Kumar","year":"2014","unstructured":"Kumar KS, Babu A, Sundarapandian G, Roy P, Thangavelu A, Kumar KS, Arumugam R, Chandran NDJ, Muniraju M, Mahapatra M, Banyard AC, Manohar BM, Parida S (2014) Molecular characterisation of lineage IV peste des petits ruminants virus using multi gene sequence data. Vet Microbiol 174:39\u201349. https:\/\/doi.org\/10.1016\/j.vetmic.2014.08.031","journal-title":"Vet Microbiol"},{"key":"5386_CR6","doi-asserted-by":"publisher","first-page":"1617","DOI":"10.12681\/jhvms.21784","volume":"70","author":"A Sait","year":"2019","unstructured":"Sait A, Dagalp SB (2019) Molecular analysis of peste des petits ruminants virus from outbreak in Turkey during 2010\u20132012. J Hell Vet Med Soc 70:1617\u20131624. https:\/\/doi.org\/10.12681\/jhvms.21784","journal-title":"J Hell Vet Med Soc"},{"key":"5386_CR7","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1007\/978-3-030-25385-1","volume-title":"Transboundary animal diseases in Sahelian Africa and connected regions, e-book","author":"A Diallo","year":"2019","unstructured":"Diallo A, Bataille A, Lancelot R, Libeau G (2019) Peste des petits ruminants. In: Kardjadj M, Diallo A, Lancelot R (eds) Transboundary animal diseases in Sahelian Africa and connected regions, e-book. Springer, Switzerland, pp 233\u2013266. https:\/\/doi.org\/10.1007\/978-3-030-25385-1"},{"key":"5386_CR8","doi-asserted-by":"publisher","first-page":"5591","DOI":"10.1016\/j.vaccine.2007.02.013","volume":"25","author":"A Diallo","year":"2007","unstructured":"Diallo A, Minet C, Le Goff C, Berhe G, Albina E, Libeau G, Barrett T (2007) The threat of peste des petits ruminants: progress in vaccine development for disease control. Vaccine 25:5591\u20135597. https:\/\/doi.org\/10.1016\/j.vaccine.2007.02.013","journal-title":"Vaccine"},{"unstructured":"OIE (2011) Report of the meeting of the OIE ad hoc group on peste des petits rumiants (PPR). https:\/\/www.oie.int\/doc\/ged\/D11081.PDF. Accessed 11 Mar 2019","key":"5386_CR9"},{"key":"5386_CR10","doi-asserted-by":"publisher","first-page":"168","DOI":"10.3390\/vaccines8020168","volume":"8","author":"M Mahapatra","year":"2020","unstructured":"Mahapatra M, Selvaraj M, Parida S (2020) Comparison of immunogenicity and protective efficacy of PPR live attenuated vaccines (Nigeria 75\/1 and Sungri 96) administered by intranasal and subcutaneous routes. Vaccines 8:168. https:\/\/doi.org\/10.3390\/vaccines8020168","journal-title":"Vaccines"},{"key":"5386_CR11","doi-asserted-by":"publisher","first-page":"2147","DOI":"10.1007\/s00705-020-04732-1","volume":"165","author":"WG Dundon","year":"2020","unstructured":"Dundon WG, Diallo A, Cattoli G (2020) Peste des petits ruminants in Africa: a review of currently available molecular epidemiological data. Arch Virol 165:2147\u20132163. https:\/\/doi.org\/10.1007\/s00705-020-04732-1","journal-title":"Arch Virol"},{"key":"5386_CR12","doi-asserted-by":"publisher","first-page":"349","DOI":"10.35248\/2329-891X.20.8.349","volume":"8","author":"HSH Nour","year":"2020","unstructured":"Nour HSH (2020) Challenges and opportunities for global eradication of paste des petits ruminants (PPR). J Trop Dis 8:349. https:\/\/doi.org\/10.35248\/2329-891X.20.8.349","journal-title":"J Trop Dis"},{"key":"5386_CR13","doi-asserted-by":"publisher","first-page":"699","DOI":"10.3390\/v11080699","volume":"11","author":"M Mahapatra","year":"2019","unstructured":"Mahapatra M, Howson E, Fowler V, Batten C, Flannery J, Selvaraj M, Parida S (2019) Rapid detection of peste des petits ruminants virus (PPRV) nucleic acid using a novel low-cost reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for future use in nascent PPR eradication programme. Viruses 11:699. https:\/\/doi.org\/10.3390\/v11080699","journal-title":"Viruses"},{"key":"5386_CR14","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1016\/j.jviromet","volume":"171","author":"CA Batten","year":"2011","unstructured":"Batten CA, Banyard AC, King DP, Henstock MR, Edwards L, Sanders A, Buczkowski H, Oura CCL, Barrett T (2011) A real-time RT-PCR assay for the specific detection of peste des petits ruminants virus. J Virol Methods 171:401\u2013404. https:\/\/doi.org\/10.1016\/j.jviromet","journal-title":"J Virol Methods"},{"key":"5386_CR15","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1111\/tbed.12117","volume":"62","author":"A Polci","year":"2015","unstructured":"Polci A, Cosseddu GM, Ancora M, Pinoni C, El Harrak M, Sebhatu TT, Ghebremeskel E, Sghaier S, Lelli R, Monaco F (2015) Development and preliminary evaluation of a new real-time RT-PCR assay for detection of peste des petits ruminants virus genome. Transbound Emerg Dis 62:332\u2013338. https:\/\/doi.org\/10.1111\/tbed.12117","journal-title":"Transbound Emerg Dis"},{"key":"5386_CR16","doi-asserted-by":"publisher","first-page":"59","DOI":"10.3390\/v13010059","volume":"13","author":"H Zhao","year":"2021","unstructured":"Zhao H, Njeumi F, Parida S, Benfield CT (2021) Progress towards eradication of peste des petits ruminants through vaccination. Viruses 13:59. https:\/\/doi.org\/10.3390\/v13010059","journal-title":"Viruses"},{"key":"5386_CR17","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1016\/j.ymeth.2010.01.013","volume":"50","author":"M Erali","year":"2010","unstructured":"Erali M, Wittwer CT (2010) High resolution melting analysis for gene scanning. Methods 50:250\u2013261. https:\/\/doi.org\/10.1016\/j.ymeth.2010.01.013","journal-title":"Methods"},{"key":"5386_CR18","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/j.jviromet.2018.12.006","volume":"265","author":"L Pallandre","year":"2019","unstructured":"Pallandre L, Lesne M, de Boiss\u00e9son C, Charrier A, Daniel P, Tragnan A, Debeuf B, Chesneau V, Bigarr\u00e9 L (2019) Genetic identification of two Acipenser iridovirus-European variants using high-resolution melting analysis. J Virol Methods 265:105\u2013112. https:\/\/doi.org\/10.1016\/j.jviromet.2018.12.006","journal-title":"J Virol Methods"},{"key":"5386_CR19","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.mcp.2018.08.003","volume":"41","author":"Y Pestova","year":"2018","unstructured":"Pestova Y, Byadovskaya O, Kononov A, Sprygin A (2018) A real-time high-resolution melting PCR assay for detection and differentiation among sheep pox virus, goat pox virus, field and vaccine strains of lumpy skin disease virus. Mol Cell Prob 41:57\u201360. https:\/\/doi.org\/10.1016\/j.mcp.2018.08.003","journal-title":"Mol Cell Prob"},{"key":"5386_CR20","doi-asserted-by":"publisher","DOI":"10.1016\/j.ttbdis.2019.101312","volume":"11","author":"J Wang","year":"2020","unstructured":"Wang J, Yang J, Gao S, Liu A, Rashid M, Li Y, Liu Z, Liu J, Liu G, Luo J, Guan G, Yin H (2020) Rapid detection and differentiation of Theileria annulata, T. orientalis and T. sinensis using high-resolution melting analysis. Ticks Tick Borne Dis 11:101312. https:\/\/doi.org\/10.1016\/j.ttbdis.2019.101312","journal-title":"Ticks Tick Borne Dis"},{"key":"5386_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.jviromet.2019.03.001","volume":"268","author":"D Wen","year":"2019","unstructured":"Wen D, Liu G, Opriessnig T, Yang Z, Jiang Y (2019) Simultaneous detection of five pig viruses associated with enteric disease in pigs using EvaGreen real-time PCR combined with melting curve analysis. J Virol Methods 268:1\u20138. https:\/\/doi.org\/10.1016\/j.jviromet.2019.03.001","journal-title":"J Virol Methods"},{"key":"5386_CR22","doi-asserted-by":"publisher","first-page":"6646","DOI":"10.1038\/s41598-019-43158-x","volume":"9","author":"TR Chibssa","year":"2019","unstructured":"Chibssa TR, Settypalli TBK, Berguido FJ, Grabherr R, Loitsch A, Tuppurainen E, Nwankpa N, Tounkara K, Madani H, Omani A, Diop M, Cattoli G, Diallo A, Lamien CE (2019) An HRM assay to differentiate sheeppox virus vaccine strains from sheeppox virus field isolates and other capripoxvirus species. Sci Rep 9:6646. https:\/\/doi.org\/10.1038\/s41598-019-43158-x","journal-title":"Sci Rep"},{"key":"5386_CR23","doi-asserted-by":"publisher","first-page":"151","DOI":"10.1016\/0168-1702(95)00076-3","volume":"39","author":"MA Forsyth","year":"1995","unstructured":"Forsyth MA, Barrett T (1995) Evaluation of polymerase chain reaction for the detection and characterisation of rinderpest and peste des petits ruminants viruses for epidemiological studies. Virus Res 39:151\u2013163. https:\/\/doi.org\/10.1016\/0168-1702(95)00076-3","journal-title":"Virus Res"},{"key":"5386_CR24","doi-asserted-by":"publisher","first-page":"212","DOI":"10.3906\/vet-2009-41","volume":"45","author":"ME Oz","year":"2021","unstructured":"Oz ME, Torlak E, Avci O, Dogan M, Uncu AT (2021) A new molecular approach to the diagnosis of small ruminant morbillivirus with EvaGreen based assay. Turk J Vet Anim Sci 45:212\u2013220. https:\/\/doi.org\/10.3906\/vet-2009-41","journal-title":"Turk J Vet Anim Sci"},{"key":"5386_CR25","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870\u20131874. https:\/\/doi.org\/10.1093\/molbev\/msw054","journal-title":"Mol Biol Evol"},{"key":"5386_CR26","doi-asserted-by":"publisher","first-page":"3299","DOI":"10.1093\/molbev\/msx248","volume":"34","author":"J Rozas","year":"2017","unstructured":"Rozas J, Ferrer-Mata A, Sanchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sanchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol 34:3299\u20133302. https:\/\/doi.org\/10.1093\/molbev\/msx248","journal-title":"Mol Biol Evol"},{"key":"5386_CR27","doi-asserted-by":"publisher","first-page":"1864","DOI":"10.1093\/oxfordjournals.molbev.a003728","volume":"18","author":"P Forster","year":"2001","unstructured":"Forster P, Torroni A, Renfrew C, R\u00f6hl A (2001) Phylogenetic star contraction applied to Asian and Papuan mtDNA evolution. Mol Biol Evol 18:1864\u20131881. https:\/\/doi.org\/10.1093\/oxfordjournals.molbev.a003728","journal-title":"Mol Biol Evol"},{"key":"5386_CR28","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1093\/oxfordjournals.molbev.a026036","volume":"16","author":"HJ Bandelt","year":"1999","unstructured":"Bandelt HJ, Forster P, R\u00f6hl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37\u201348. https:\/\/doi.org\/10.1093\/oxfordjournals.molbev.a026036","journal-title":"Mol Biol Evol"},{"key":"5386_CR29","doi-asserted-by":"publisher","first-page":"671","DOI":"10.3906\/biy-1401-28","volume":"38","author":"L G\u00fcler","year":"2014","unstructured":"G\u00fcler L, \u015eevik M, Has\u00f6ks\u00fcz M (2014) Phylogenetic analysis of peste des petits ruminants virus from outbreaks in Turkey during 2008\u20132012. T J Biol 38:671\u2013678. https:\/\/doi.org\/10.3906\/biy-1401-28","journal-title":"T J Biol"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-022-05386-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00705-022-05386-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-022-05386-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,2,28]],"date-time":"2022-02-28T15:18:17Z","timestamp":1646061497000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00705-022-05386-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,2,11]]},"references-count":29,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2022,3]]}},"alternative-id":["5386"],"URL":"https:\/\/doi.org\/10.1007\/s00705-022-05386-x","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"type":"print","value":"0304-8608"},{"type":"electronic","value":"1432-8798"}],"subject":[],"published":{"date-parts":[[2022,2,11]]},"assertion":[{"value":"29 July 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 January 2022","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 February 2022","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors have no conflicts of interest to declare that are relevant to the content of this article.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"This study using nucleic acid extracts did not involve the handling of live animals.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}}]}}