{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,6]],"date-time":"2026-02-06T08:22:51Z","timestamp":1770366171504,"version":"3.49.0"},"reference-count":51,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2026,1,8]],"date-time":"2026-01-08T00:00:00Z","timestamp":1767830400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2026,1,8]],"date-time":"2026-01-08T00:00:00Z","timestamp":1767830400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100007653","name":"Universit\u00e4tsklinikum Jena","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100007653","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2026,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Mycoviruses have been classified into 35 virus families so far. In addition to numerous mycoviruses with proven fungal or oomycetes hosts, many newly discovered viruses from environmental water and soil samples and various animal or plant specimens exhibit significant similarity to classified mycoviruses, thereby expanding the known sequence space of fungal and related viruses. In this study, we searched for mycoviruses in two environmental water samples that had been collected from the Teltow Canal and the Havel River in Berlin, Germany. Viral sequences with similarity to members of 16 virus families were identified. The most common viruses in our samples were botourmia-like viruses with moderate similarity to members of the genus\n                    <jats:italic>Ourmiavirus<\/jats:italic>\n                    . Notably, 58 of the ourmia-like sequences from the Teltow Canal and Havel River and 10 ourmia-like sequences from other sources exhibited a dicistronic genome layout. The second open reading frame (ORF) of these viruses encoded a putative capsid protein with an S domain that showed little similarity to the structural proteins of the classified ourmiaviruses. The second-largest virus group (59 sequences) was assigned to the order\n                    <jats:italic>Ghabrivirales<\/jats:italic>\n                    , and 13 of these sequences exhibited similarity to members of the suborder\n                    <jats:italic>Alphatotivirineae<\/jats:italic>\n                    (families\n                    <jats:italic>Orthototiviridae<\/jats:italic>\n                    ,\n                    <jats:italic>Pseudototiviridae<\/jats:italic>\n                    ,\n                    <jats:italic>Botybirnaviridae<\/jats:italic>\n                    , and\n                    <jats:italic>Chrysoviridae<\/jats:italic>\n                    ). Thirty-three sequences clustered with members of the suborder\n                    <jats:italic>Betatotivirineae<\/jats:italic>\n                    \u2013 three of them with members of the family\n                    <jats:italic>Artiviridae<\/jats:italic>\n                    . Fifteen highly divergent toti-like sequences suggest the need to establish a new higher-order taxon within the order\n                    <jats:italic>Ghabrivirales<\/jats:italic>\n                    . Other virus sequences were assigned to the families\n                    <jats:italic>Mitoviridae<\/jats:italic>\n                    (three unuamitoviruses and 10 highly divergent mitovirus-like sequences),\n                    <jats:italic>Narnaviridae<\/jats:italic>\n                    (five \"alphanarnavirus\"-like sequences),\n                    <jats:italic>Amalgaviridae<\/jats:italic>\n                    (two zybavirus-like sequences),\n                    <jats:italic>Hypoviridae<\/jats:italic>\n                    (one partial RdRP sequence), and\n                    <jats:italic>Mymonaviridae<\/jats:italic>\n                    (one partial RdRP sequence), and one was not classified (Sclerophthora macrospora B-like virus). Notable results include a clade of highly divergent mitovirus-like sequences with a standard translation code, three narnavirus-like sequences with a reverse-frame ORF, and a clade of four\n                    <jats:italic>Ghabrivirales<\/jats:italic>\n                    -like replicase sequences that were found to have numerous termination codons regardless of which translation table was used.\n                  <\/jats:p>","DOI":"10.1007\/s00705-025-06496-y","type":"journal-article","created":{"date-parts":[[2026,1,8]],"date-time":"2026-01-08T01:59:13Z","timestamp":1767837553000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A metagenomic analysis of urban river samples reveals high numbers of sequences related to mycoviruses"],"prefix":"10.1007","volume":"171","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8317-2152","authenticated-orcid":false,"given":"Roland","family":"Zell","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9199-8990","authenticated-orcid":false,"given":"Marco","family":"Groth","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0006-5378-7013","authenticated-orcid":false,"given":"Lukas","family":"Selinka","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6112-2368","authenticated-orcid":false,"given":"Hans-Christoph","family":"Selinka","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2026,1,8]]},"reference":[{"key":"6496_CR1","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1146\/annurev-phyto-080508-081932","volume":"47","author":"SA Ghabrial","year":"2009","unstructured":"Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353\u2013384. https:\/\/doi.org\/10.1146\/annurev-phyto-080508-081932","journal-title":"Annu Rev Phytopathol"},{"key":"6496_CR2","doi-asserted-by":"publisher","first-page":"1815","DOI":"10.1038\/ismej.2015.247","volume":"10","author":"SR Parratt","year":"2016","unstructured":"Parratt SR, Laine AL (2016) The role of hyperparasitism in microbial pathogen ecology and evolution. ISME J 10:1815\u20131822. https:\/\/doi.org\/10.1038\/ismej.2015.247","journal-title":"ISME J"},{"key":"6496_CR3","doi-asserted-by":"publisher","first-page":"12803","DOI":"10.1073\/pnas.1608013113","volume":"113","author":"S Liu","year":"2016","unstructured":"Liu S, Xie J, Cheng J, Li B, Chen T, Fu Y, Li G, Wang M, Jin H, Wan H, Jiang D (2016) Fungal DNA virus infects a mycophagous insect and utilizes it as a transmission vector. Proc Natl Acad Sci USA 113:12803\u201312808. https:\/\/doi.org\/10.1073\/pnas.1608013113","journal-title":"Proc Natl Acad Sci USA"},{"key":"6496_CR4","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2319582121","volume":"121","author":"R Dai","year":"2024","unstructured":"Dai R, Yang S, Pang T, Tian M, Wang H, Zhang D, Wu Y, Kondo H, Andika IB, Kang Z, Sun L (2024) Identification of a negative-strand RNA virus with natural plant and fungal host. Proc Natl Acad Sci USA 121:e2319582121. https:\/\/doi.org\/10.1073\/pnas.2319582121","journal-title":"Proc Natl Acad Sci USA"},{"key":"6496_CR5","doi-asserted-by":"publisher","first-page":"620","DOI":"10.1016\/j.tim.2024.04.01","volume":"32","author":"J Jia","year":"2024","unstructured":"Jia J, Jiang D, Xie J (2024) Viruses shuttle between fungi and plants. Trends Microbiol 32:620\u2013621. https:\/\/doi.org\/10.1016\/j.tim.2024.04.01","journal-title":"Trends Microbiol"},{"key":"6496_CR6","doi-asserted-by":"publisher","first-page":"12267","DOI":"10.1073\/pnas.1714916114","volume":"114","author":"IB Andika","year":"2017","unstructured":"Andika IB, Wei S, Cao C, Salaipeth L, Kondo H, Sun L (2017) Phytopathogenic fungus hosts a plant virus: a naturally occurring cross-kingdom viral infection. Proc Natl Acad Sci USA 114:12267\u201312272. https:\/\/doi.org\/10.1073\/pnas.1714916114","journal-title":"Proc Natl Acad Sci USA"},{"key":"6496_CR7","doi-asserted-by":"publisher","first-page":"fiz119","DOI":"10.1093\/femsec\/fiz119","volume":"95","author":"S Sutela","year":"2019","unstructured":"Sutela S, Poimala A, Vainio EJ (2019) Viruses of fungi and oomycetes in the soil environment. FEMS Microbiol Ecol 95:fiz119. https:\/\/doi.org\/10.1093\/femsec\/fiz119","journal-title":"FEMS Microbiol Ecol"},{"key":"6496_CR8","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1038\/s41579-019-0175-8","volume":"17","author":"HP Grossart","year":"2019","unstructured":"Grossart HP, Van den Wyngaert S, Kagami M, Wurzbacher C, Cunliffe M, Rojas-Jimenez K (2019) Fungi in aquatic systems. Nat Rev Microbiol 17:340\u2013354. https:\/\/doi.org\/10.1038\/s41579-019-0175-8","journal-title":"Nat Rev Microbiol"},{"key":"6496_CR9","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1016\/j.virol.2015.02.034","volume":"479\u2013480","author":"SA Ghabrial","year":"2015","unstructured":"Ghabrial SA, Caston JR, Jiang D, Nibert M, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479\u2013480:356\u2013368. https:\/\/doi.org\/10.1016\/j.virol.2015.02.034","journal-title":"Virology"},{"key":"6496_CR10","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1146\/annurev-phyto-021621-122122","volume":"60","author":"H Kondo","year":"2022","unstructured":"Kondo H, Botella L, Suzuki N (2022) Mycovirus diversity and evolution revealed\/inferred from recent studies. Annu Rev Phytopathol 60:307\u2013336. https:\/\/doi.org\/10.1146\/annurev-phyto-021621-122122","journal-title":"Annu Rev Phytopathol"},{"key":"6496_CR11","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1016\/0042-6822(83)90113-7","volume":"130","author":"VH Dawe","year":"1983","unstructured":"Dawe VH, Kuhn CW (1983) Virus-like particles in the aquatic fungus, Rhizidiomyces. Virology 130:10\u201320. https:\/\/doi.org\/10.1016\/0042-6822(83)90113-7","journal-title":"Virology"},{"key":"6496_CR12","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/bx.aivir.2023.02.002","volume":"115","author":"MA Ayll\u00f3n","year":"2023","unstructured":"Ayll\u00f3n MA, Vainio EJ (2023) Mycoviruses as a part of the global virome: Diversity, evolutionary links and lifestyle. Adv Virus Res 115:1\u201386. https:\/\/doi.org\/10.1016\/bx.aivir.2023.02.002","journal-title":"Adv Virus Res"},{"key":"6496_CR13","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2023.102337","volume":"75","author":"Y Sato","year":"2023","unstructured":"Sato Y, Suzuki N (2023) Continued mycovirus discovery expanding our understanding of virus lifestyles, symptom expression, and host defense. Curr Opin Microbiol 75:102337. https:\/\/doi.org\/10.1016\/j.mib.2023.102337","journal-title":"Curr Opin Microbiol"},{"key":"6496_CR14","doi-asserted-by":"publisher","first-page":"1113","DOI":"10.3390\/v11121113","volume":"11","author":"AH Abdoulaye","year":"2019","unstructured":"Abdoulaye AH, Foda MF, Kotta-Loizou I (2019) Viruses infecting the plant pathogenic fungus Rhizoctonia solani. Viruses 11:1113. https:\/\/doi.org\/10.3390\/v11121113","journal-title":"Viruses"},{"key":"6496_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/ve\/veae003","volume":"10","author":"M Forgia","year":"2024","unstructured":"Forgia M, Daghino S, Chiapello M, Ciuffo M, Turina M (2024) New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trjectory for viruses infecting oomycetes. Virus Evol 10:1\u201316. https:\/\/doi.org\/10.1093\/ve\/veae003","journal-title":"Virus Evol"},{"key":"6496_CR16","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1046\/annurev-virology-111821-122539","volume":"10","author":"IB Andika","year":"2023","unstructured":"Andika IB, Tian M, Bian R, Cao X, Luo M, Kondo H, Sun L (2023) Cross-Kingdom interactions between plant and fungal viruses. Annu Rev Virol 10:119\u2013138. https:\/\/doi.org\/10.1046\/annurev-virology-111821-122539","journal-title":"Annu Rev Virol"},{"key":"6496_CR17","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.865287","volume":"13","author":"R Zell","year":"2022","unstructured":"Zell R, Groth M, Selinka L, Selinka HC (2022) Picorna-like viruses of the Havel River. Germany. Front Microbiol 13:865287. https:\/\/doi.org\/10.3389\/fmicb.2022.865287","journal-title":"Germany. Front Microbiol"},{"key":"6496_CR18","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1007\/s00705-022-05688-0","volume":"168","author":"R Zell","year":"2023","unstructured":"Zell R, Groth M, Selinka L, Selinka HC (2023) Hepeliviruses in two waterbodies in Berlin. Germany. Arch Virol 168:9. https:\/\/doi.org\/10.1007\/s00705-022-05688-0","journal-title":"Germany. Arch Virol"},{"key":"6496_CR19","doi-asserted-by":"publisher","first-page":"1458","DOI":"10.3390\/pathogens12121458","volume":"12","author":"R Zell","year":"2023","unstructured":"Zell R, Groth M, Selinka L, Selinka HC (2023) Exploring the diversity of plant-associated viruses and related viruses in riverine freshwater samples collected in Berlin, Germany. Pathogens 12:1458. https:\/\/doi.org\/10.3390\/pathogens12121458","journal-title":"Pathogens"},{"key":"6496_CR20","doi-asserted-by":"publisher","first-page":"1020","DOI":"10.3390\/v16071020","volume":"16","author":"R Zell","year":"2024","unstructured":"Zell R, Groth M, Selinka L, Selinka HC (2024) Diversity of picorna-like viruses in the Teltow Canal, Berlin. Germany. Viruses 16:1020. https:\/\/doi.org\/10.3390\/v16071020","journal-title":"Germany. Viruses"},{"key":"6496_CR21","doi-asserted-by":"publisher","first-page":"2361","DOI":"10.3390\/microorganisms12112361","volume":"12","author":"R Zell","year":"2024","unstructured":"Zell R, Groth M, Selinka L, Selinka HC (2024) Metagenomic analyses of water samples of two urban freshwaters in Berlin, Germany, reveal new highly diverse invertebrate viruses. Microorganisms 12:2361. https:\/\/doi.org\/10.3390\/microorganisms12112361","journal-title":"Microorganisms"},{"key":"6496_CR22","doi-asserted-by":"publisher","unstructured":"Wyn-Jones AP, Carducci A, Cook N, D'gostino MD, Divizia M, Fleischer J, Gantzer A, Girones R, H\u00f6ller C, de Roda Husman AM, Kay D, Kozyra I, L\u00f3pez-Pila J, Muscillo M, Sao Jos\u00e9 Nascimento M, Papgeorgiou G, Rutjes S, Sellwood J, Szewzyk R, Wyer M (2011) Surveillance of adenoviruses and noroviruses in European recreational waters. Water Res 45:1025\u22121038. https:\/\/doi.org\/10.1016\/j.waterres.2010.10.015","DOI":"10.1016\/j.waterres.2010.10.015"},{"key":"6496_CR23","doi-asserted-by":"publisher","first-page":"10","DOI":"10.14806\/ej.17.1.200","volume":"17","author":"M Martin","year":"2011","unstructured":"Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequence reads. EMBnet J 17:10\u201312. https:\/\/doi.org\/10.14806\/ej.17.1.200","journal-title":"EMBnet J"},{"key":"6496_CR24","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1101\/gr.213959.116","volume":"27","author":"S Nurk","year":"2017","unstructured":"Nurk S, Melshko D, Korobeynikov A, Pevzner PA (2017) metaSPAdes: A new versatile metagenomic assembler. Genome Res 27:824\u2013834. https:\/\/doi.org\/10.1101\/gr.213959.116","journal-title":"Genome Res"},{"key":"6496_CR25","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/nmeth.3176","volume":"12","author":"B Buchfink","year":"2015","unstructured":"Buchfink B, Xie C, Huson DH (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12:59\u201360. https:\/\/doi.org\/10.1038\/nmeth.3176","journal-title":"Nat Methods"},{"key":"6496_CR26","doi-asserted-by":"publisher","first-page":"1547","DOI":"10.1093\/molbev\/msy096","volume":"35","author":"S Kumar","year":"2018","unstructured":"Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) Molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547\u20131549. https:\/\/doi.org\/10.1093\/molbev\/msy096","journal-title":"Mol Biol Evol"},{"key":"6496_CR27","doi-asserted-by":"publisher","first-page":"268","DOI":"10.1093\/molbev\/msu300","volume":"32","author":"LT Nguyen","year":"2015","unstructured":"Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol 32:268\u2013274. https:\/\/doi.org\/10.1093\/molbev\/msu300","journal-title":"Mol Biol Evol"},{"key":"6496_CR28","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1093\/molbev\/msx281","volume":"35","author":"DT Hoang","year":"2018","unstructured":"Hoang DT, Chernomor O, von Haeseler A, Minh BQ (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Mol Biol Evol 35:518\u2013522. https:\/\/doi.org\/10.1093\/molbev\/msx281","journal-title":"Mol Biol Evol"},{"key":"6496_CR29","doi-asserted-by":"publisher","DOI":"10.1099\/jgv.0.002047","volume":"105","author":"L Donaire","year":"2024","unstructured":"Donaire L, Xie J, Nerva L, Jiang D, Marzano SYL, Sabanadzovic S, Turina M, Ayllon MA (2024) ICTV virus taxonomy profile: Botourmiaviridae 2024. J Gen Virol 105:002047. https:\/\/doi.org\/10.1099\/jgv.0.002047","journal-title":"J Gen Virol"},{"key":"6496_CR30","doi-asserted-by":"publisher","unstructured":"Wolf YI, Kazlauskas D, Iranzo J, Luc\u00eda-Sanz A, Kuhn JH, Krupovic M, Dolja VV, Koonin EV (2018) Origins and evolution of the global RNA virome. mBio 9:e02329-18. https:\/\/doi.org\/10.1128\/mBio.02329-18","DOI":"10.1128\/mBio.02329-18"},{"key":"6496_CR31","unstructured":"Koonin EV, Dolja VV, Krupovic M, Varsani A, Wolf YI, Yutin N, Zerbini M, Kuhn JH (2019) Proposal 2019.006G.a.v1.Riboviria. Create a metataxonomic framework, filling all principal taxonomic ranks, for realm Riboviria. https:\/\/talk.ictvonline.org\/ictv\/proposals\/2019.006G.zip. Accessed 25 June 2025"},{"key":"6496_CR32","doi-asserted-by":"publisher","first-page":"725","DOI":"10.1038\/nsb844","volume":"9","author":"H Naitow","year":"2002","unstructured":"Naitow H, Tang J, Canady M, Wickner RB, Johnson JE (2002) L-A virus at 3.4 \u00c5 resolution reveals particle architecture and mRNA decapping mechanism. Nat Struct Biol 9:725\u2013728. https:\/\/doi.org\/10.1038\/nsb844","journal-title":"Nat Struct Biol"},{"key":"6496_CR33","unstructured":"Botella L, Manny AR, Nibert ML, Vainio E (2021) Create 100 new species and four new genera (Cryppavirales: Mitoviridae). https:\/\/talk.ictvonline.org\/ictv\/proposals\/2021.003F.R.Mitoviridae_100nsp_4ngen.zip. Accessed 25 June 2025"},{"key":"6496_CR34","doi-asserted-by":"publisher","first-page":"96","DOI":"10.1016\/j.virol.2017.04.010","volume":"507","author":"M Nibert","year":"2017","unstructured":"Nibert M (2017) Mitovirus UGA(Trp) codon usage parallels that of host mitochondria. Virology 507:96\u2013100. https:\/\/doi.org\/10.1016\/j.virol.2017.04.010","journal-title":"Virology"},{"key":"6496_CR35","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/j.virol.2018.02.005","volume":"518","author":"ML Nibert","year":"2018","unstructured":"Nibert ML, Vong M, Fugate KK, Debat HJ (2018) Evidence for contemporary plant mitoviruses. Virology 518:14\u201324. https:\/\/doi.org\/10.1016\/j.virol.2018.02.005","journal-title":"Virology"},{"key":"6496_CR36","doi-asserted-by":"publisher","first-page":"e01998","DOI":"10.1128\/JVI.01998-18","volume":"93","author":"L Nerva","year":"2019","unstructured":"Nerva L, Vigani G, Di Silvestre D, Ciuffo M, Forgia M, Chitarra W, Turina M (2019) Biological and molecular characterization of Chenopodium quinoa mitovirus 1 reveals a distinct small RNA response compared to those of cytoplasmic RNA viruses. J Virol 93:e01998-e2018. https:\/\/doi.org\/10.1128\/JVI.01998-18","journal-title":"J Virol"},{"key":"6496_CR37","doi-asserted-by":"publisher","unstructured":"Dinan AM, Lukhovitskaya NI, Olendraite I, Firth AE (2020) A case for a negative-strand coding sequence in a group of positive-sense RNA viruses. Virus Evol 6:veaa007. https:\/\/doi.org\/10.1093\/ve\/veaa007","DOI":"10.1093\/ve\/veaa007"},{"key":"6496_CR38","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0080720","volume":"8","author":"S Cook","year":"2013","unstructured":"Cook S, Chung BYW, Bass D, Moureau G, Tang S, McAlister E, Culverwell CL, Gl\u00fccksman E, Wang H, Brown TDK, Gould EA, Harbach RE, de Lamballerie X, Firth AE (2013) Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts. PLoS ONE 8:e80720. https:\/\/doi.org\/10.1371\/journal.pone.0080720","journal-title":"PLoS ONE"},{"key":"6496_CR39","doi-asserted-by":"publisher","first-page":"17982","DOI":"10.1038\/s41598-019-54181-3","volume":"9","author":"JL DiRisi","year":"2019","unstructured":"DiRisi JL, Huber G, Kistler A, Retallack H, Wilkinson M, Yllanes D (2019) An exploration of ambigrammatic sequences in narnaviruses. Sci Rep 9:17982. https:\/\/doi.org\/10.1038\/s41598-019-54181-3","journal-title":"Sci Rep"},{"key":"6496_CR40","doi-asserted-by":"publisher","unstructured":"Chiapello M, Rodr\u00edguez-Romero J, Ayll\u00f3n MA, Turina M (2020) Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. Virus Evol 6:veaa058. https:\/\/doi.org\/10.1093\/ve\/veaa058","DOI":"10.1093\/ve\/veaa058"},{"key":"6496_CR41","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1016\/j.virusres.2016.02.008","volume":"217","author":"D Depierreux","year":"2016","unstructured":"Depierreux D, Vong M, Nibert ML (2016) Nucleotide sequence of Zygosaccharomyces bailii virus Z: Evidence for +1 programmed ribosomal frameshifting and for assignment to family Amalgaviridae. Virus Res 217:115\u2013124. https:\/\/doi.org\/10.1016\/j.virusres.2016.02.008","journal-title":"Virus Res"},{"key":"6496_CR42","doi-asserted-by":"publisher","first-page":"653","DOI":"10.3186\/jjphytopath.49.653","volume":"49","author":"R Honkura","year":"1983","unstructured":"Honkura R, Shrako Y, Ehara Y, Yamanaka S (1983) Two types of virus-like particles isolated from downy mildew diseased rice plants. Ann Phytopathol Soc Jpn 49:653\u2013658. https:\/\/doi.org\/10.3186\/jjphytopath.49.653","journal-title":"Ann Phytopathol Soc Jpn"},{"key":"6496_CR43","doi-asserted-by":"publisher","first-page":"459","DOI":"10.3186\/jjphytopath.51.459","volume":"51","author":"Y Shirako","year":"1985","unstructured":"Shirako Y, Ehara Y (1985) Composition of viruses isolated from Sclerophthora macrospora-infected rice plants. Ann Phytopath Soc Jpn 51:459\u2013464. https:\/\/doi.org\/10.3186\/jjphytopath.51.459","journal-title":"Ann Phytopath Soc Jpn"},{"key":"6496_CR44","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1111\/j.1364-3703.2008.00499.x","volume":"9","author":"M Heller-Dohmen","year":"2008","unstructured":"Heller-Dohmen M, G\u00f6pfert JC, Hammerschmidt R, Spring O (2008) Different pathotypes of the sunflower downy mildew pathogen Plasmopara halstedii all contain isometiric virions. Mol Plant Pathol 9:777\u2013786. https:\/\/doi.org\/10.1111\/j.1364-3703.2008.00499.x","journal-title":"Mol Plant Pathol"},{"key":"6496_CR45","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1186\/1743-422X-8-123","volume":"8","author":"M Heller-Dohmen","year":"2011","unstructured":"Heller-Dohmen M, G\u00f6pfert JC, Pfannstiel J, Spring O (2011) The nucleotide sequence and genome organization of Plasmopara halstedii virus. Virology J 8:123. https:\/\/doi.org\/10.1186\/1743-422X-8-123","journal-title":"Virology J"},{"key":"6496_CR46","doi-asserted-by":"publisher","first-page":"394","DOI":"10.1016\/S0042-6822(03)00183-1","volume":"311","author":"T Yokoi","year":"2003","unstructured":"Yokoi T, Yamashita S, Hibi T (2003) The nucleotide sequence and genome organization of Sclerophthora macrospora virus A. Virology 311:394\u2013399. https:\/\/doi.org\/10.1016\/S0042-6822(03)00183-1","journal-title":"Virology"},{"key":"6496_CR47","doi-asserted-by":"publisher","first-page":"344","DOI":"10.1006\/viro.1999.0018","volume":"264","author":"T Yokoi","year":"1999","unstructured":"Yokoi T, Takemoto Y, Suzuki M, Yamashita S, Hibi T (1999) The nucleotide sequence and genome organization of Sclerophthora macrospora virus B. Virology 264:344\u2013349. https:\/\/doi.org\/10.1006\/viro.1999.0018","journal-title":"Virology"},{"key":"6496_CR48","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1038\/s41564-022-01180-2","volume":"7","author":"YM Chen","year":"2022","unstructured":"Chen YM, Sadiq S, Tian JH, Chen X, Lin XD, Shen JJ, Chen H, Hao ZY, Wille M, Zhou ZC, Wu J, Li F, Wang HW, Yang WD, Xu QY, Wang W, Gao WH, Holmes EC, Zhang YZ (2022) RNA viromes from terrestrial sites across China expand environmental viral diversity. Nat Microbiol 7:1312\u20131323. https:\/\/doi.org\/10.1038\/s41564-022-01180-2","journal-title":"Nat Microbiol"},{"key":"6496_CR49","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2024.110007","volume":"593","author":"S Sadiq","year":"2024","unstructured":"Sadiq S, Harvey E, Mifsud JCO, Minasny B, McBratney AB, Pozza LE, Mahar JE, Holmes EC (2024) Australian terrestrial environments harbour extensive RNA virus diversity. Virology 593:110007. https:\/\/doi.org\/10.1016\/j.virol.2024.110007","journal-title":"Virology"},{"key":"6496_CR50","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/nature20167","volume":"540","author":"M Shi","year":"2016","unstructured":"Shi M, Lin XD, Tian JH, Chen LJ, Chen X, Li CX, Qin XC, Li J, Cao JP, Eden JS, Buchmann J, Wang W, Xu J, Holmes EC, Zhang YZ (2016) Redefining the invertebrate RNA viroshere. Nature 540:539\u2013543. https:\/\/doi.org\/10.1038\/nature20167","journal-title":"Nature"},{"key":"6496_CR51","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.virusres.2017.02.015","volume":"233","author":"JD Pyle","year":"2017","unstructured":"Pyle JD, Keeling PJ, Nibert ML (2017) Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods. Virus Res 233:95\u2013104. https:\/\/doi.org\/10.1016\/j.virusres.2017.02.015","journal-title":"Virus Res"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-025-06496-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00705-025-06496-y","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-025-06496-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,5]],"date-time":"2026-02-05T17:24:14Z","timestamp":1770312254000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00705-025-06496-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1,8]]},"references-count":51,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2026,2]]}},"alternative-id":["6496"],"URL":"https:\/\/doi.org\/10.1007\/s00705-025-06496-y","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"value":"0304-8608","type":"print"},{"value":"1432-8798","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1,8]]},"assertion":[{"value":"24 August 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 December 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 January 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article does not contain studies with humans or animals.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}},{"value":"The authors declare that there are no conflicts of interest.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflicts of interest"}}],"article-number":"46"}}