{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T10:53:20Z","timestamp":1784631200945,"version":"3.55.0"},"reference-count":240,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2026,3,24]],"date-time":"2026-03-24T00:00:00Z","timestamp":1774310400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,3,24]],"date-time":"2026-03-24T00:00:00Z","timestamp":1774310400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100012339","name":"CSIR \u2013 Indian Institute of Chemical Biology","doi-asserted-by":"publisher","award":["CSIR \u2013 Indian Institute of Chemical Biology"],"award-info":[{"award-number":["CSIR \u2013 Indian Institute of Chemical Biology"]}],"id":[{"id":"10.13039\/501100012339","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2026,4]]},"DOI":"10.1007\/s00705-026-06531-6","type":"journal-article","created":{"date-parts":[[2026,3,24]],"date-time":"2026-03-24T14:20:29Z","timestamp":1774362029000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Plant viruses and the microbiome: a complex network shaping plant health and disease resistance"],"prefix":"10.1007","volume":"171","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9486-9393","authenticated-orcid":false,"given":"Anish","family":"Tamang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Savita","family":"Chaudhary","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9730-2547","authenticated-orcid":false,"given":"Shiv Shanker","family":"Pandey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5189-7327","authenticated-orcid":false,"given":"Vipin","family":"Hallan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,3,24]]},"reference":[{"key":"6531_CR1","doi-asserted-by":"publisher","first-page":"6238","DOI":"10.1111\/1462-2920.16245","volume":"24","author":"G Wei","year":"2022","unstructured":"Wei G, Zhang G, Li M et al (2022) Core rhizosphere Microbiome of Panax Notoginseng and its associations with belowground biomass and saponin contents. Environ Microbiol 24:6238\u20136251. https:\/\/doi.org\/10.1111\/1462-2920.16245","journal-title":"Environ Microbiol"},{"key":"6531_CR2","doi-asserted-by":"publisher","first-page":"1812","DOI":"10.1111\/1462-2920.15240","volume":"23","author":"S Compant","year":"2021","unstructured":"Compant S, Cambon MC, Vacher C et al (2021) The plant endosphere world \u2013 bacterial life within plants. Environ Microbiol 23:1812\u20131829. https:\/\/doi.org\/10.1111\/1462-2920.15240","journal-title":"Environ Microbiol"},{"key":"6531_CR3","doi-asserted-by":"publisher","first-page":"668","DOI":"10.1007\/s00248-018-1161-9","volume":"76","author":"T Gomes","year":"2018","unstructured":"Gomes T, Pereira JA, Benhadi J et al (2018) Endophytic and epiphytic phyllosphere fungal communities are shaped by different environmental factors in a mediterranean ecosystem. Microb Ecol 76:668\u2013679. https:\/\/doi.org\/10.1007\/s00248-018-1161-9","journal-title":"Microb Ecol"},{"key":"6531_CR4","doi-asserted-by":"publisher","first-page":"1376","DOI":"10.1038\/s41396-021-01184-6","volume":"16","author":"KM Meyer","year":"2022","unstructured":"Meyer KM, Porch R, Muscettola IE et al (2022) Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere Microbiome. ISME J 16:1376\u20131387. https:\/\/doi.org\/10.1038\/s41396-021-01184-6","journal-title":"ISME J"},{"key":"6531_CR5","doi-asserted-by":"publisher","first-page":"e40517","DOI":"10.1016\/j.heliyon.2024.e40517","volume":"10","author":"OS Olanrewaju","year":"2024","unstructured":"Olanrewaju OS, Glick BR, Babalola OO (2024) Beyond correlation: Understanding the causal link between Microbiome and plant health. Heliyon 10:e40517. https:\/\/doi.org\/10.1016\/j.heliyon.2024.e40517","journal-title":"Heliyon"},{"key":"6531_CR6","doi-asserted-by":"publisher","first-page":"606","DOI":"10.1126\/science.aaw9285","volume":"366","author":"VJ Carri\u00f3n","year":"2019","unstructured":"Carri\u00f3n VJ, Perez-Jaramillo J, Cordovez V et al (2019) Pathogen-induced activation of disease-suppressive functions in the endophytic root Microbiome. Science 366:606\u2013612","journal-title":"Science"},{"key":"6531_CR7","doi-asserted-by":"publisher","first-page":"676","DOI":"10.1038\/s41587-019-0104-4","volume":"37","author":"J Zhang","year":"2019","unstructured":"Zhang J, Liu Y-X, Zhang N et al (2019) NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice. Nat Biotechnol 37:676\u2013684","journal-title":"Nat Biotechnol"},{"key":"6531_CR8","doi-asserted-by":"publisher","first-page":"535","DOI":"10.1016\/j.tree.2004.07.021","volume":"19","author":"PK Anderson","year":"2004","unstructured":"Anderson PK, Cunningham AA, Patel NG et al (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends Ecol Evol 19:535\u2013544. https:\/\/doi.org\/10.1016\/j.tree.2004.07.021","journal-title":"Trends Ecol Evol"},{"key":"6531_CR9","first-page":"1637","volume":"27","author":"A Noman","year":"2017","unstructured":"Noman A, Aqeel M, Javed M et al (2017) Histological changes in Hibiscus rosa-sinensis endorse acclimation and phytoremediation of industrially polluted sites. J Anim Plant Sci 27:1637\u20131648","journal-title":"J Anim Plant Sci"},{"key":"6531_CR10","doi-asserted-by":"publisher","first-page":"933","DOI":"10.1016\/j.molp.2020.06.007","volume":"13","author":"S He","year":"2020","unstructured":"He S, Creasey Krainer KM (2020) Pandemics of people and plants: which is the greater threat to food security? Mol Plant 13:933. https:\/\/doi.org\/10.1016\/j.molp.2020.06.007","journal-title":"Mol Plant"},{"key":"6531_CR11","doi-asserted-by":"publisher","first-page":"1092","DOI":"10.3389\/fpls.2020.01092","volume":"11","author":"L Rubio","year":"2020","unstructured":"Rubio L, Galipienso L, Ferriol I (2020) Detection of plant viruses and disease management: relevance of genetic diversity and evolution. Front Plant Sci 11:1092. https:\/\/doi.org\/10.3389\/fpls.2020.01092","journal-title":"Front Plant Sci"},{"key":"6531_CR12","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1094\/PHYTO-05-22-0167-RVW","volume":"113","author":"S Tatineni","year":"2023","unstructured":"Tatineni S, Hein GL (2023) Plant viruses of agricultural importance: current and future perspectives of virus disease management strategies. Phytopathology 113:117\u2013141. https:\/\/doi.org\/10.1094\/PHYTO-05-22-0167-RVW","journal-title":"Phytopathology"},{"key":"6531_CR13","doi-asserted-by":"publisher","first-page":"R619","DOI":"10.1016\/j.cub.2018.03.054","volume":"28","author":"AC Vel\u00e1squez","year":"2018","unstructured":"Vel\u00e1squez AC, Castroverde CDM, He SY (2018) Plant\u2013pathogen warfare under changing climate conditions. Curr Biol 28:R619\u2013R634. https:\/\/doi.org\/10.1016\/j.cub.2018.03.054","journal-title":"Curr Biol"},{"key":"6531_CR14","doi-asserted-by":"publisher","first-page":"259","DOI":"10.3390\/plants10020259","volume":"10","author":"MF Seleiman","year":"2021","unstructured":"Seleiman MF, Al-Suhaibani N, Ali N et al (2021) Drought stress impacts on plants and different approaches to alleviate its adverse effects. Plants 10:259. https:\/\/doi.org\/10.3390\/plants10020259","journal-title":"Plants"},{"key":"6531_CR15","doi-asserted-by":"publisher","first-page":"547","DOI":"10.3389\/fpls.2015.00547","volume":"6","author":"I Brunner","year":"2015","unstructured":"Brunner I, Herzog C, Dawes MA et al (2015) How tree roots respond to drought. Front Plant Sci 6:547. https:\/\/doi.org\/10.3389\/fpls.2015.00547","journal-title":"Front Plant Sci"},{"key":"6531_CR16","doi-asserted-by":"crossref","unstructured":"Talaat NB, Shawky BT (2017) Microbe-mediated induced abiotic stress tolerance responses in plants.In: Singh D, Singh H, Prabha R (eds) Plant\u2013microbe interactions in agro-ecological perspectives, volume 2: microbial interactions and agro-ecological impacts. Springer, pp 101\u2013133","DOI":"10.1007\/978-981-10-6593-4_5"},{"key":"6531_CR17","doi-asserted-by":"publisher","first-page":"575","DOI":"10.3390\/plants8120575","volume":"8","author":"I Maksimov","year":"2019","unstructured":"Maksimov I, Sorokan A, Burkhanova GF, Veselova SV, Alekseev VY, Shein MY (2019) Mechanisms of plant tolerance to RNA viruses induced by plant growth-promoting microorganisms. Plants 8:575. https:\/\/doi.org\/10.3390\/plants8120575","journal-title":"Plants"},{"key":"6531_CR18","doi-asserted-by":"publisher","unstructured":"Shepherd R, Wakeman R, Romanko R (1968) DNA in cauliflower mosaic virus. https:\/\/doi.org\/10.5555\/19691101377","DOI":"10.5555\/19691101377"},{"key":"6531_CR19","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1016\/0042-6822(77)90220-3","volume":"82","author":"RM Goodman","year":"1977","unstructured":"Goodman RM (1977) Single-stranded DNA genome in a whitefly-transmitted plant virus. Virology 82:171\u2013179","journal-title":"Virology"},{"key":"6531_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1745-6150-1-1","volume":"1","author":"EV Koonin","year":"2006","unstructured":"Koonin EV, Senkevich TG, Dolja VV (2006) The ancient virus world and evolution of cells. Biol Direct 1:1\u201327","journal-title":"Biol Direct"},{"key":"6531_CR21","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1146\/annurev.phyto.38.1.117","volume":"38","author":"M Zaitlin","year":"2000","unstructured":"Zaitlin M, Palukaitis P (2000) Advances in Understanding plant viruses and virus diseases. Annu Rev Phytopathol 38:117\u2013143. https:\/\/doi.org\/10.1146\/annurev.phyto.38.1.117","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR22","doi-asserted-by":"publisher","first-page":"100028","DOI":"10.1016\/j.cropd.2023.100028","volume":"2","author":"A Das","year":"2023","unstructured":"Das A, Nath S (2023) The complex interplay between plant\u2013microbe and virus interactions in sustainable agriculture: Harnessing phytomicrobiomes for enhanced soil health, designer plants, resource use efficiency, and food security. Crop Des 2:100028. https:\/\/doi.org\/10.1016\/j.cropd.2023.100028","journal-title":"Crop Des"},{"key":"6531_CR23","doi-asserted-by":"publisher","first-page":"632","DOI":"10.1038\/s41579-019-0232-3","volume":"17","author":"P Lefeuvre","year":"2019","unstructured":"Lefeuvre P, Martin DP, Elena SF et al (2019) Evolution and ecology of plant viruses. Nat Rev Microbiol 17:632\u2013644. https:\/\/doi.org\/10.1038\/s41579-019-0232-3","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR24","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1007\/s12571-015-0533-y","volume":"8","author":"RA Mumford","year":"2016","unstructured":"Mumford RA, Macarthur R, Boonham N (2016) The role and challenges of new diagnostic technology in plant biosecurity. Food Secur 8:103\u2013109. https:\/\/doi.org\/10.1007\/s12571-015-0533-y","journal-title":"Food Secur"},{"key":"6531_CR25","doi-asserted-by":"publisher","first-page":"551","DOI":"10.3390\/plants14040551","volume":"14","author":"L Ferretti","year":"2025","unstructured":"Ferretti L, Taglienti A (2025) Plant viruses, viroids and phytoplasmas: insight into evolutionary, pathogenicity, and epidemiology studies. Plants 14:551. https:\/\/doi.org\/10.3390\/plants14040551","journal-title":"Plants"},{"key":"6531_CR26","doi-asserted-by":"publisher","first-page":"406","DOI":"10.1016\/S1369-5274(03)00087-0","volume":"6","author":"MJ Roossinck","year":"2003","unstructured":"Roossinck MJ (2003) Plant RNA virus evolution. Curr Opin Microbiol 6:406\u2013409. https:\/\/doi.org\/10.1016\/S1369-5274(03)00087-0","journal-title":"Curr Opin Microbiol"},{"key":"6531_CR27","doi-asserted-by":"publisher","first-page":"3449","DOI":"10.3390\/plants11243449","volume":"11","author":"L Manjunatha","year":"2022","unstructured":"Manjunatha L, Rajashekara H, Uppala LS et al (2022) Mechanisms of microbial plant protection and control of plant viruses. Plants 11:3449. https:\/\/doi.org\/10.3390\/plants11243449","journal-title":"Plants"},{"key":"6531_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-020-00875-0","volume":"8","author":"G Berg","year":"2020","unstructured":"Berg G, Rybakova D, Fischer D et al (2020) Microbiome definition re-visited: old concepts and new challenges. Microbiome 8:1\u201322. https:\/\/doi.org\/10.1186\/s40168-020-00875-0","journal-title":"Microbiome"},{"key":"6531_CR29","doi-asserted-by":"publisher","first-page":"4950","DOI":"10.1038\/ncomms5950","volume":"5","author":"M Ofek-Lalzar","year":"2014","unstructured":"Ofek-Lalzar M, Sela N, Goldman-Voronov M et al (2014) Niche and host-associated functional signatures of the root surface Microbiome. Nat Commun 5:4950","journal-title":"Nat Commun"},{"key":"6531_CR30","doi-asserted-by":"publisher","first-page":"192","DOI":"10.1111\/nph.14036","volume":"212","author":"C Vogel","year":"2016","unstructured":"Vogel C, Bodenhausen N, Gruissem W, Vorholt JA (2016) The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection. New Phytol 212:192\u2013207","journal-title":"New Phytol"},{"key":"6531_CR31","doi-asserted-by":"publisher","first-page":"634","DOI":"10.1111\/1574-6976.12028","volume":"37","author":"R Mendes","year":"2013","unstructured":"Mendes R, Garbeva P, Raaijmakers JM (2013) The rhizosphere microbiome: significance of plant-beneficial, plant-pathogenic, and human-pathogenic microorganisms. FEMS Microbiol Rev 37:634\u2013663","journal-title":"FEMS Microbiol Rev"},{"key":"6531_CR32","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1146\/annurev.micro.62.081307.162918","volume":"63","author":"B Lugtenberg","year":"2009","unstructured":"Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63:541\u2013556","journal-title":"Annu Rev Microbiol"},{"key":"6531_CR33","doi-asserted-by":"publisher","first-page":"475","DOI":"10.3389\/fpls.2013.00475","volume":"4","author":"CMJ Pieterse","year":"2013","unstructured":"Pieterse CMJ, Poelman EH, Van Wees SCM, Dicke M (2013) Induced plant responses to microbes and insects. Front Plant Sci 4:475","journal-title":"Front Plant Sci"},{"key":"6531_CR34","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1007\/s11104-009-0127-6","volume":"328","author":"MS Dardanelli","year":"2010","unstructured":"Dardanelli MS, Manyani H, Gonz\u00e1lez-Barroso S et al (2010) Effect of the presence of the plant growth-promoting rhizobacterium Chryseobacterium balustinum Aur9 and salt stress on the pattern of flavonoids exuded by soybean roots. Plant Soil 328:483\u2013493","journal-title":"Plant Soil"},{"key":"6531_CR35","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1126\/science.aaz5192","volume":"368","author":"FT de Vries","year":"2020","unstructured":"de Vries FT, Griffiths RI, Knight CG et al (2020) Harnessing rhizosphere microbiomes for drought-resilient crop production. Science 368:270\u2013274","journal-title":"Science"},{"key":"6531_CR36","doi-asserted-by":"publisher","first-page":"733","DOI":"10.1016\/j.tplants.2020.03.014","volume":"25","author":"H Liu","year":"2020","unstructured":"Liu H, Brettell LE, Qiu Z, Singh BK (2020) Microbiome-mediated stress resistance in plants. Trends Plant Sci 25:733\u2013743","journal-title":"Trends Plant Sci"},{"key":"6531_CR37","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1016\/j.tplants.2012.04.001","volume":"17","author":"RL Berendsen","year":"2012","unstructured":"Berendsen RL, Pieterse CMJ, Bakker PAHM (2012) The rhizosphere Microbiome and plant health. Trends Plant Sci 17:478\u2013486","journal-title":"Trends Plant Sci"},{"key":"6531_CR38","doi-asserted-by":"publisher","first-page":"669","DOI":"10.1016\/j.soilbio.2009.11.024","volume":"42","author":"S Compant","year":"2010","unstructured":"Compant S, Cl\u00e9ment C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42:669\u2013678","journal-title":"Soil Biol Biochem"},{"key":"6531_CR39","doi-asserted-by":"publisher","first-page":"486","DOI":"10.3389\/fmicb.2015.00486","volume":"6","author":"F Bringel","year":"2015","unstructured":"Bringel F, Cou\u00e9e I (2015) Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics. Front Microbiol 6:486","journal-title":"Front Microbiol"},{"key":"6531_CR40","doi-asserted-by":"publisher","first-page":"1482","DOI":"10.3389\/fpls.2018.01482","volume":"9","author":"SD Carvalho","year":"2018","unstructured":"Carvalho SD, Castillo JA (2018) Influence of light on plant\u2013phyllosphere interaction. Front Plant Sci 9:1482","journal-title":"Front Plant Sci"},{"key":"6531_CR41","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1073\/pnas.1109326109","volume":"109","author":"JD Van Elsas","year":"2012","unstructured":"Van Elsas JD, Chiurazzi M, Mallon CA et al (2012) Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci USA 109:1159\u20131164","journal-title":"Proc Natl Acad Sci USA"},{"key":"6531_CR42","doi-asserted-by":"publisher","first-page":"1617","DOI":"10.3389\/fpls.2017.01617","volume":"8","author":"R Jacoby","year":"2017","unstructured":"Jacoby R, Peukert M, Succurro A et al (2017) The role of soil microorganisms in plant mineral nutrition \u2013 current knowledge and future directions. Front Plant Sci 8:1617","journal-title":"Front Plant Sci"},{"key":"6531_CR43","doi-asserted-by":"publisher","first-page":"e20396","DOI":"10.1371\/journal.pone.0020396","volume":"6","author":"D Johnston-Monje","year":"2011","unstructured":"Johnston-Monje D, Raizada MN (2011) Conservation and diversity of seed-associated endophytes in Zea across boundaries of evolution, ethnography and ecology. PLoS ONE 6:e20396","journal-title":"PLoS ONE"},{"key":"6531_CR44","doi-asserted-by":"publisher","first-page":"e02496","DOI":"10.1128\/mBio.02496-21","volume":"12","author":"R Gonz\u00e1lez","year":"2021","unstructured":"Gonz\u00e1lez R, Elena SF (2021) The interplay between the host Microbiome and pathogenic viral infections. mBio 12:e02496\u2013e02421","journal-title":"mBio"},{"key":"6531_CR45","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1007\/s11103-015-0412-0","volume":"90","author":"PE Busby","year":"2016","unstructured":"Busby PE, Ridout M, Newcombe G (2016) Fungal endophytes: modifiers of plant disease. Plant Mol Biol 90:645\u2013655","journal-title":"Plant Mol Biol"},{"key":"6531_CR46","doi-asserted-by":"publisher","first-page":"1033","DOI":"10.1111\/nph.13808","volume":"210","author":"U Ritpitakphong","year":"2016","unstructured":"Ritpitakphong U, Falquet L, Vimoltust A et al (2016) The Microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen. New Phytol 210:1033\u20131043","journal-title":"New Phytol"},{"key":"6531_CR47","doi-asserted-by":"publisher","first-page":"e01128","DOI":"10.1128\/JVI.01781-18","volume":"93","author":"M Safari","year":"2019","unstructured":"Safari M, Ferrari MJ, Roossinck MJ (2019) Manipulation of aphid behavior by a persistent plant virus. J Virol 93:e01128\u2013e01119","journal-title":"J Virol"},{"key":"6531_CR48","doi-asserted-by":"publisher","first-page":"379","DOI":"10.3390\/pathogens9050379","volume":"9","author":"G Bonanomi","year":"2020","unstructured":"Bonanomi G, Alioto D, Minutolo M et al (2020) Organic amendments modulate soil microbiota and reduce virus disease incidence in the TSWV\u2013tomato pathosystem. Pathogens 9:379","journal-title":"Pathogens"},{"key":"6531_CR49","doi-asserted-by":"publisher","unstructured":"Rabinowitz JD, Purdy JG, Vastag L et al (2011) Metabolomics in drug target discovery. Cold Spring Harb Symp Quant Biol 76:235\u2013246. https:\/\/doi.org\/10.1101\/sqb.2011.76.010694","DOI":"10.1101\/sqb.2011.76.010694"},{"key":"6531_CR50","doi-asserted-by":"publisher","first-page":"2358","DOI":"10.1128\/JVI.02309-14","volume":"89","author":"KA Fontaine","year":"2015","unstructured":"Fontaine KA, Sanchez EL, Camarda R, Lagunoff M (2015) Dengue virus induces and requires Glycolysis for optimal replication. J Virol 89:2358\u20132366","journal-title":"J Virol"},{"key":"6531_CR51","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1007\/s40588-018-0109-7","volume":"6","author":"JG Purdy","year":"2019","unstructured":"Purdy JG (2019) Pathways to Understanding virus\u2013host metabolism interactions. Curr Clin Microbiol Rep 6:34\u201343","journal-title":"Curr Clin Microbiol Rep"},{"key":"6531_CR52","doi-asserted-by":"publisher","first-page":"e01128","DOI":"10.1128\/JVI.01781-18","volume":"93","author":"M Safari","year":"2019","unstructured":"Safari M, Ferrari MJ, Roossinck MJ (2019) Manipulation of aphid behavior by a persistent plant virus. J Virol 93:e01128\u2013e01119","journal-title":"J Virol"},{"key":"6531_CR53","doi-asserted-by":"publisher","first-page":"1100","DOI":"10.1038\/nbt.4232","volume":"36","author":"MJ Kwak","year":"2018","unstructured":"Kwak MJ, Kong HG, Choi K et al (2018) Rhizosphere Microbiome structure alters to enable wilt resistance in tomato. Nat Biotechnol 36:1100\u20131109. https:\/\/doi.org\/10.1038\/nbt.4232","journal-title":"Nat Biotechnol"},{"key":"6531_CR54","doi-asserted-by":"publisher","first-page":"392","DOI":"10.3390\/microorganisms11020392","volume":"11","author":"S Ali","year":"2023","unstructured":"Ali S, Tyagi A, Bae H (2023) Plant microbiome: an ocean of possibilities for improving disease resistance in plants. Microorganisms 11:392. https:\/\/doi.org\/10.3390\/microorganisms11020392","journal-title":"Microorganisms"},{"key":"6531_CR55","doi-asserted-by":"publisher","first-page":"e02496","DOI":"10.1128\/mbio.02496-21","volume":"12","author":"R Gonz\u00e1lez","year":"2021","unstructured":"Gonz\u00e1lez R, Elena SF (2021) The interplay between the host Microbiome and pathogenic viral infections. mBio 12:e02496\u2013e02421. https:\/\/doi.org\/10.1128\/mbio.02496-21","journal-title":"mBio"},{"key":"6531_CR56","doi-asserted-by":"publisher","first-page":"1296","DOI":"10.1111\/nph.15014","volume":"220","author":"M Chialva","year":"2018","unstructured":"Chialva M, Salvioli di Fossalunga A, Daghino S et al (2018) Native soils with their microbiotas elicit a state of alert in tomato plants. New Phytol 220:1296\u20131308. https:\/\/doi.org\/10.1111\/nph.15014","journal-title":"New Phytol"},{"key":"6531_CR57","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1146\/annurev-phyto-082712-102340","volume":"52","author":"CMJ Pieterse","year":"2014","unstructured":"Pieterse CMJ, Zamioudis C, Berendsen RL et al (2014) Induced systemic resistance by beneficial microbes. Annu Rev Phytopathol 52:347\u2013375. https:\/\/doi.org\/10.1146\/annurev-phyto-082712-102340","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR58","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1146\/annurev-phyto-073009-114450","volume":"48","author":"M Shoresh","year":"2010","unstructured":"Shoresh M, Harman GE, Mastouri F (2010) Induced systemic resistance and plant responses to fungal biocontrol agents. Annu Rev Phytopathol 48:21\u201343. https:\/\/doi.org\/10.1146\/annurev-phyto-073009-114450","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR59","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1016\/j.cropro.2013.11.020","volume":"56","author":"L Shen","year":"2014","unstructured":"Shen L, Wang F, Yang J et al (2014) Control of tobacco mosaic virus by Pseudomonas fluorescens CZ powder in greenhouses and the field. Crop Prot 56:87\u201390. https:\/\/doi.org\/10.1016\/j.cropro.2013.11.020","journal-title":"Crop Prot"},{"key":"6531_CR60","doi-asserted-by":"publisher","first-page":"90","DOI":"10.3389\/fpls.2018.00090","volume":"9","author":"HG Kong","year":"2018","unstructured":"Kong HG, Shin TS, Kim TH, Ryu C-M (2018) Stereoisomers of the bacterial volatile compound 2,3-butanediol differently elicit systemic defense responses of pepper against multiple viruses in the field. Front Plant Sci 9:90. https:\/\/doi.org\/10.3389\/fpls.2018.00090","journal-title":"Front Plant Sci"},{"key":"6531_CR61","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1080\/09583157.2015.1009882","volume":"25","author":"EKF Elbeshehy","year":"2015","unstructured":"Elbeshehy EKF, Youssef SA, Elazzazy AM (2015) Resistance induction in pumpkin Cucurbita maxima L. against watermelon mosaic potyvirus by plant growth-promoting rhizobacteria. Biocontrol Sci Technol 25:525\u2013542. https:\/\/doi.org\/10.1080\/09583157.2015.1009882","journal-title":"Biocontrol Sci Technol"},{"key":"6531_CR62","unstructured":"Firmansyah D (2017) Use of chitosan and plant growth-promoting rhizobacteria to control squash mosaic virus on cucumber plants. http:\/\/repository.ipb.ac.id\/handle\/123456789\/85776. Accessed 12 Jan 2026"},{"key":"6531_CR63","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1186\/s12870-021-02838-5","volume":"21","author":"X-B Shi","year":"2021","unstructured":"Shi X-B, Yan S, Zhang C et al (2021) Aphid endosymbiont facilitates virus transmission by modulating the volatile profile of host plants. BMC Plant Biol 21:67. https:\/\/doi.org\/10.1186\/s12870-021-02838-5","journal-title":"BMC Plant Biol"},{"key":"6531_CR64","doi-asserted-by":"publisher","first-page":"2441","DOI":"10.1038\/s41396-023-01549-z","volume":"17","author":"P Sanches","year":"2023","unstructured":"Sanches P, De Moraes CM, Mescher MC (2023) Endosymbionts modulate virus effects on aphid\u2013plant interactions. ISME J 17:2441\u20132451. https:\/\/doi.org\/10.1038\/s41396-023-01549-z","journal-title":"ISME J"},{"key":"6531_CR65","doi-asserted-by":"publisher","first-page":"1251165","DOI":"10.3389\/fevo.2023.1251165","volume":"11","author":"L Enders","year":"2023","unstructured":"Enders L, Hefley T (2023) Modeling host\u2013microbiome interactions to improve mechanistic Understanding of aphid-vectored plant pathogens. Front Ecol Evol 11:1251165. https:\/\/doi.org\/10.3389\/fevo.2023.1251165","journal-title":"Front Ecol Evol"},{"key":"6531_CR66","doi-asserted-by":"publisher","first-page":"1267832","DOI":"10.3389\/fmicb.2023.1267832","volume":"14","author":"A Minwuyelet","year":"2023","unstructured":"Minwuyelet A, Petronio GP, Yewhalaw D et al (2023) Symbiotic Wolbachia in mosquitoes and its role in reducing the transmission of mosquito-borne diseases: updates and prospects. Front Microbiol 14:1267832. https:\/\/doi.org\/10.3389\/fmicb.2023.1267832","journal-title":"Front Microbiol"},{"key":"6531_CR67","doi-asserted-by":"publisher","unstructured":"Ferreira LYM, Santos JPN, DG Souza do N et al (2025) Potential effect of wolbachia on virus restriction in the spider mite Tetranychus truncatus. Front Microbiol 16:1570606. https:\/\/doi.org\/10.3389\/fmicb.2025.1570606","DOI":"10.3389\/fmicb.2025.1570606"},{"key":"6531_CR68","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1136\/gutjnl-2015-309990","volume":"65","author":"JR Marchesi","year":"2016","unstructured":"Marchesi JR, Adams DH, Fava F et al (2016) The gut microbiota and host health: a new clinical frontier. Gut 65:330\u2013339","journal-title":"Gut"},{"key":"6531_CR69","doi-asserted-by":"publisher","first-page":"aad5872","DOI":"10.1126\/science.aad5872","volume":"351","author":"JK Pfeiffer","year":"2016","unstructured":"Pfeiffer JK, Virgin HW (2016) Transkingdom control of viral infection and immunity in the mammalian intestine. Science 351:aad5872. https:\/\/doi.org\/10.1126\/science.aad5872","journal-title":"Science"},{"key":"6531_CR70","doi-asserted-by":"publisher","first-page":"1363","DOI":"10.1038\/s41598-018-37062-z","volume":"9","author":"SR Longford","year":"2019","unstructured":"Longford SR, Campbell AH, Nielsen S et al (2019) Interactions within the Microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont. Sci Rep 9:1363","journal-title":"Sci Rep"},{"key":"6531_CR71","doi-asserted-by":"publisher","first-page":"e0187461","DOI":"10.1371\/journal.pone.0187461","volume":"12","author":"MO Ramalho","year":"2017","unstructured":"Ramalho MO, Bueno OC, Moreau CS (2017) Species-specific signatures of the Microbiome from Camponotus and Colobopsis ants across developmental stages. PLoS ONE 12:e0187461","journal-title":"PLoS ONE"},{"key":"6531_CR72","doi-asserted-by":"publisher","first-page":"206","DOI":"10.1016\/j.soilbio.2015.07.009","volume":"89","author":"J Yuan","year":"2015","unstructured":"Yuan J, Chaparro JM, Manter DK et al (2015) Roots from distinct plant developmental stages rapidly select their own Microbiome independent of edaphic factors. Soil Biol Biochem 89:206\u2013209","journal-title":"Soil Biol Biochem"},{"key":"6531_CR73","doi-asserted-by":"publisher","first-page":"565","DOI":"10.1146\/annurev-phyto-080516-035623","volume":"55","author":"S Hacquard","year":"2017","unstructured":"Hacquard S, Spaepen S, Garrido-Oter R, Schulze-Lefert P (2017) Interplay between innate immunity and the plant microbiota. Annu Rev Phytopathol 55:565\u2013589","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR74","doi-asserted-by":"publisher","first-page":"e01128","DOI":"10.1128\/msystems.00608-20","volume":"6","author":"M Taylor","year":"2021","unstructured":"Taylor M, Vega NM (2021) Host immunity alters community ecology and stability of the Microbiome in a Caenorhabditis elegans model. mSystems 6:e01128\u2013e01120","journal-title":"mSystems"},{"key":"6531_CR75","doi-asserted-by":"publisher","first-page":"e00894","DOI":"10.1128\/mBio.00824-21","volume":"12","author":"A Marra","year":"2021","unstructured":"Marra A, Hanson MA, Kondo S et al (2021) Drosophila antimicrobial peptides and lysozymes regulate gut microbiota composition and abundance. mBio 12:e00894\u2013e00821","journal-title":"mBio"},{"key":"6531_CR76","doi-asserted-by":"publisher","first-page":"2640","DOI":"10.3389\/fimmu.2018.02640","volume":"9","author":"S Hanada","year":"2018","unstructured":"Hanada S, Pirzadeh M, Carver KY, Deng JC (2018) Respiratory viral infection-induced Microbiome alterations and secondary bacterial pneumonia. Front Immunol 9:2640","journal-title":"Front Immunol"},{"key":"6531_CR77","doi-asserted-by":"publisher","first-page":"e03248","DOI":"10.1128\/mBio.03236-19","volume":"11","author":"HT Groves","year":"2020","unstructured":"Groves HT, Higham SL, Moffatt MF et al (2020) Respiratory viral infection alters the gut microbiota by inducing inappetence. mBio 11:e03248\u2013e03219","journal-title":"mBio"},{"key":"6531_CR78","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1111\/pbi.13495","volume":"19","author":"L Zhang","year":"2021","unstructured":"Zhang L, Zhang J, Wei Y et al (2021) Microbiome-wide association studies reveal correlations between rhizosphere Microbiome structure and disease resistance in cassava. Plant Biotechnol J 19:689\u2013701. https:\/\/doi.org\/10.1111\/pbi.13495","journal-title":"Plant Biotechnol J"},{"key":"6531_CR79","doi-asserted-by":"publisher","first-page":"e01124","DOI":"10.1128\/AEM.01124-18","volume":"84","author":"JMA Stough","year":"2018","unstructured":"Stough JMA, Kolton M, Kostka JE et al (2018) Diversity of active viral infections within the Sphagnum Microbiome. Appl Environ Microbiol 84:e01124\u2013e01118","journal-title":"Appl Environ Microbiol"},{"key":"6531_CR80","doi-asserted-by":"publisher","first-page":"450","DOI":"10.3389\/fmicb.2020.00450","volume":"11","author":"RA Gilbert","year":"2020","unstructured":"Gilbert RA, Townsend EM, Crew KS et al (2020) Rumen virus populations: technological advances enhancing current Understanding. Front Microbiol 11:450","journal-title":"Front Microbiol"},{"key":"6531_CR81","doi-asserted-by":"publisher","first-page":"514","DOI":"10.1038\/s41579-021-00536-5","volume":"19","author":"G Liang","year":"2021","unstructured":"Liang G, Bushman FD (2021) The human virome: assembly, composition and host interactions. Nat Rev Microbiol 19:514\u2013527","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR82","doi-asserted-by":"publisher","unstructured":"Basu S, Kumar G (2020) Stress signalling in the phytomicrobiome: breadth and potential. In: Phytomicrobiome Interactions. pp. 245\u2013268. https:\/\/doi.org\/10.1007\/978-981-15-2576-6_12","DOI":"10.1007\/978-981-15-2576-6_12"},{"key":"6531_CR83","doi-asserted-by":"publisher","first-page":"384","DOI":"10.3390\/plants11030384","volume":"11","author":"R Grabka","year":"2022","unstructured":"Grabka R, D\u2019entremont TW, Adams SJ et al (2022) Fungal endophytes and their role in agricultural plant protection against pests and pathogens. Plants 11:384. https:\/\/doi.org\/10.3390\/plants11030384","journal-title":"Plants"},{"key":"6531_CR84","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/j.ijbiomac.2015.04.012","volume":"78","author":"G Zhang","year":"2015","unstructured":"Zhang G, Han L, Zhang G et al (2015) Purification and characterization of a novel glycoprotein from Streptomyces sp. ZX01. Int J Biol Macromol 78:195\u2013201. https:\/\/doi.org\/10.1016\/j.ijbiomac.2015.04.012","journal-title":"Int J Biol Macromol"},{"key":"6531_CR85","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/j.pestbp.2014.04.008","volume":"111","author":"Y Han","year":"2014","unstructured":"Han Y, Luo Y, Qin S et al (2014) Induction of systemic resistance against tobacco mosaic virus by Ningnanmycin in tobacco. Pestic Biochem Physiol 111:14\u201318. https:\/\/doi.org\/10.1016\/j.pestbp.2014.04.008","journal-title":"Pestic Biochem Physiol"},{"key":"6531_CR86","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1016\/j.mib.2006.03.004","volume":"9","author":"KS Lam","year":"2006","unstructured":"Lam KS (2006) Discovery of novel metabolites from marine actinomycetes. Curr Opin Microbiol 9:245\u2013251. https:\/\/doi.org\/10.1016\/j.mib.2006.03.004","journal-title":"Curr Opin Microbiol"},{"key":"6531_CR87","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-019-0750-2","volume":"7","author":"S Chen","year":"2019","unstructured":"Chen S, Waghmode TR, Sun R et al (2019) Root-associated microbiomes of wheat under combined effects of plant development and nitrogen fertilization. Microbiome 7:1\u201313","journal-title":"Microbiome"},{"key":"6531_CR88","doi-asserted-by":"publisher","first-page":"1442","DOI":"10.18520\/cs\/v113\/i07\/1442-1447","volume":"113","author":"SB Latake","year":"2017","unstructured":"Latake SB, Borkar SG (2017) Characterization of marine actinomycete with antiviral activity against cucumber mosaic virus. Curr Sci 113:1442\u20131447. https:\/\/doi.org\/10.18520\/cs\/v113\/i07\/1442-1447","journal-title":"Curr Sci"},{"key":"6531_CR89","doi-asserted-by":"publisher","first-page":"347","DOI":"10.3316\/informit.210935051248689","volume":"8","author":"S Mishra","year":"2014","unstructured":"Mishra S, Jagadeesh KS, Krishnaraj PU, Prem S (2014) Biocontrol of tomato leaf curl virus with chitosan-supplemented Pseudomonas formulations under field conditions. Aust J Crop Sci 8:347\u2013355. https:\/\/doi.org\/10.3316\/informit.210935051248689","journal-title":"Aust J Crop Sci"},{"key":"6531_CR90","doi-asserted-by":"publisher","first-page":"779","DOI":"10.1094\/pdis.2000.84.7.779","volume":"84","author":"JF Murphy","year":"2000","unstructured":"Murphy JF, Zehnder GW, Schuster DJ et al (2000) PGPR-mediated protection in tomato against tomato mottle virus. Plant Dis 84:779\u2013784. https:\/\/doi.org\/10.1094\/pdis.2000.84.7.779","journal-title":"Plant Dis"},{"key":"6531_CR91","doi-asserted-by":"publisher","first-page":"1301","DOI":"10.1094\/phyto.2003.93.10.1301","volume":"93","author":"JF Murphy","year":"2003","unstructured":"Murphy JF, Reddy MS, Ryu CM et al (2003) Rhizobacteria-mediated tomato growth promotion protects against cucumber mosaic virus. Phytopathology 93:1301\u20131307. https:\/\/doi.org\/10.1094\/phyto.2003.93.10.1301","journal-title":"Phytopathology"},{"key":"6531_CR92","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1080\/09583150500088546","volume":"15","author":"A Kandan","year":"2005","unstructured":"Kandan A, Ramiah M, Vasanthi VJ et al (2005) Pseudomonas fluorescens-based formulations for management of tomato spotted wilt virus. Biocontrol Sci Technol 15:553\u2013569. https:\/\/doi.org\/10.1080\/09583150500088546","journal-title":"Biocontrol Sci Technol"},{"key":"6531_CR93","doi-asserted-by":"publisher","first-page":"678","DOI":"10.1094\/phyto.1998.88.7.678","volume":"88","author":"M Maurhofer","year":"1998","unstructured":"Maurhofer M, Reimmann C, Schmidli-Sacherer P et al (1998) Salicylic acid biosynthetic genes in Pseudomonas fluorescens improve systemic resistance induction in tobacco. Phytopathology 88:678\u2013684. https:\/\/doi.org\/10.1094\/phyto.1998.88.7.678","journal-title":"Phytopathology"},{"key":"6531_CR94","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1023\/a:1009923702103","volume":"45","author":"GW Zehnder","year":"2000","unstructured":"Zehnder GW, Yao C, Murphy JF et al (2000) Induction of resistance in tomato against cucumber mosaic virus by PGPR. Biocontrol 45:127\u2013137. https:\/\/doi.org\/10.1023\/a:1009923702103","journal-title":"Biocontrol"},{"key":"6531_CR95","doi-asserted-by":"publisher","first-page":"12500","DOI":"10.1038\/s41598-018-28677-3","volume":"8","author":"D Beris","year":"2018","unstructured":"Beris D, Theologidis I, Skandalis N, Vassilakos N (2018) Bacillus amyloliquefaciens MBI600 induces SA-dependent resistance in tomato against TSWV and PVY. Sci Rep 8:12500. https:\/\/doi.org\/10.1038\/s41598-018-28677-3","journal-title":"Sci Rep"},{"key":"6531_CR96","first-page":"109","volume":"14","author":"T Damayanti","year":"2008","unstructured":"Damayanti T, Katerina T (2008) Protection of hot pepper against multiple viral infection using root-colonizing bacteria. J ISSAAS 14:109\u2013118","journal-title":"J ISSAAS"},{"key":"6531_CR97","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1016\/j.agee.2018.08.008","volume":"267","author":"S Vinodkumar","year":"2018","unstructured":"Vinodkumar S, Nakkeeran S, Renukadevi P, Mohankumar S (2018) Rhizospheric and endophytic Bacillus species with antiviral activity against tobacco streak virus in cotton. Agric Ecosyst Environ 267:42\u201351. https:\/\/doi.org\/10.1016\/j.agee.2018.08.008","journal-title":"Agric Ecosyst Environ"},{"key":"6531_CR98","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1007\/s13765-012-0015-2","volume":"55","author":"JY Park","year":"2012","unstructured":"Park JY, Yang SY, Kim YC et al (2012) Antiviral peptide from Pseudomonas chlororaphis O6 against tobacco mosaic virus. J Korean Soc Appl Biol Chem 55:89\u201394. https:\/\/doi.org\/10.1007\/s13765-012-0015-2","journal-title":"J Korean Soc Appl Biol Chem"},{"key":"6531_CR99","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1080\/03235400600982519","volume":"42","author":"G Karthikeyan","year":"2009","unstructured":"Karthikeyan G, Doraisamy S, Rabindran R (2009) Pseudomonas fluorescens-mediated systemic resistance against Urdbean leaf crinkle virus in blackgram. Arch Phytopathol Plant Prot 42:201\u2013212. https:\/\/doi.org\/10.1080\/03235400600982519","journal-title":"Arch Phytopathol Plant Prot"},{"key":"6531_CR100","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1080\/13102818.2016.1148634","volume":"30","author":"M Ramzan","year":"2016","unstructured":"Ramzan M, Tabassum B, Nasir IA, Khan A, Tariq M, Awan MF, Shahid N, Rao AQ, Bhatti MU (2016) Identification and application of biocontrol agents against cotton leaf curl virus disease in Gossypium hirsutum under greenhouse conditions. Biotechnol Biotechnol Equip 30:469\u2013478. https:\/\/doi.org\/10.1080\/13102818.2016.1148634","journal-title":"Biotechnol Biotechnol Equip"},{"key":"6531_CR101","doi-asserted-by":"publisher","first-page":"1390","DOI":"10.1094\/pdis.2003.87.11.1390","volume":"87","author":"K Jetiyanon","year":"2003","unstructured":"Jetiyanon K, Fowler WD, Kloepper JW (2003) Broad-spectrum protection against several pathogens by PGPR mixtures under field conditions. Plant Dis 87:1390\u20131394. https:\/\/doi.org\/10.1094\/pdis.2003.87.11.1390","journal-title":"Plant Dis"},{"key":"6531_CR102","doi-asserted-by":"publisher","first-page":"891","DOI":"10.1094\/pd-80-0891","volume":"80","author":"GS Raupach","year":"1996","unstructured":"Raupach GS, Liu L, Murphy JF et al (1996) Induced systemic resistance in cucumber and tomato using PGPR against cucumber mosaic virus. Plant Dis 80:891\u2013894. https:\/\/doi.org\/10.1094\/pd-80-0891","journal-title":"Plant Dis"},{"key":"6531_CR103","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1016\/j.biocontrol.2009.07.013","volume":"51","author":"K Srinivasan","year":"2009","unstructured":"Srinivasan K, Mathivanan N (2009) Biological control of sunflower necrosis virus using microbial consortia formulations. Biol Control 51:395\u2013402. https:\/\/doi.org\/10.1016\/j.biocontrol.2009.07.013","journal-title":"Biol Control"},{"key":"6531_CR104","doi-asserted-by":"publisher","first-page":"584","DOI":"10.1080\/03235408.2017.1352248","volume":"50","author":"OA Abdalla","year":"2017","unstructured":"Abdalla OA, Bibi S, Zhang S (2017) Application of PGPR to control Papaya ringspot virus and tomato chlorotic spot virus. Arch Phytopathol Plant Prot 50:584\u2013597. https:\/\/doi.org\/10.1080\/03235408.2017.1352248","journal-title":"Arch Phytopathol Plant Prot"},{"key":"6531_CR105","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1016\/j.apsoil.2007.12.006","volume":"39","author":"S Harish","year":"2008","unstructured":"Harish S, Kavino M, Kumar N et al (2008) Biohardening with PGPR and endophytic bacteria induces resistance against banana bunchy top virus. Appl Soil Ecol 39:187\u2013200. https:\/\/doi.org\/10.1016\/j.apsoil.2007.12.006","journal-title":"Appl Soil Ecol"},{"key":"6531_CR106","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1007\/s10658-007-9223-8","volume":"120","author":"M Kavino","year":"2008","unstructured":"Kavino M, Harish S, Kumar N et al (2008) Induction of resistance in banana against BBTV using Chitin and Pseudomonas. Eur J Plant Pathol 120:353\u2013362. https:\/\/doi.org\/10.1007\/s10658-007-9223-8","journal-title":"Eur J Plant Pathol"},{"key":"6531_CR107","doi-asserted-by":"publisher","first-page":"148","DOI":"10.3923\/ajppaj.2017.148.155","volume":"11","author":"D Firmansyah","year":"2017","unstructured":"Firmansyah D, Widodo W, Hidayat SH (2017) Chitosan and PGPR application to control squash mosaic virus in cucumber. Asian J Plant Pathol 11:148\u2013155. https:\/\/doi.org\/10.3923\/ajppaj.2017.148.155","journal-title":"Asian J Plant Pathol"},{"key":"6531_CR108","doi-asserted-by":"publisher","first-page":"122","DOI":"10.3389\/fpls.2013.00122","volume":"4","author":"HS Yi","year":"2013","unstructured":"Yi HS, Yang JW, Ryu CM (2013) Additive ISR\u2013SAR action of Bacillus pumilus INR7 and benzothiadiazole against bacterial pathogens. Front Plant Sci 4:122. https:\/\/doi.org\/10.3389\/fpls.2013.00122","journal-title":"Front Plant Sci"},{"key":"6531_CR109","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1038\/s41438-018-0079-1","volume":"6","author":"M De Palma","year":"2019","unstructured":"De Palma M, Salzano M, Villano C, Aversano R, Lorito M, Ruocco M, Docimo T, Piccinelli AL (2019) Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma Harzianum. Hortic Res 6:5. https:\/\/doi.org\/10.1038\/s41438-018-0079-1","journal-title":"Hortic Res"},{"key":"6531_CR110","doi-asserted-by":"publisher","first-page":"41766","DOI":"10.1038\/srep41766","volume":"7","author":"H Liu","year":"2017","unstructured":"Liu H, Carvalhais LC, Schenk PM, Dennis PG (2017) Effects of jasmonic acid signalling on the wheat Microbiome differ between body sites. Sci Rep 7:41766. https:\/\/doi.org\/10.1038\/srep41766","journal-title":"Sci Rep"},{"key":"6531_CR111","doi-asserted-by":"publisher","first-page":"1785","DOI":"10.3389\/fpls.2018.01785","volume":"9","author":"AM Muvea","year":"2018","unstructured":"Muvea AM, Subramanian S, Maniania NK, Poehling HM, Ekesi S, Meyh\u00f6fer R (2018) Endophytic colonization of onions induces resistance against viruliferous thrips and virus replication. Front Plant Sci 9:1785. https:\/\/doi.org\/10.3389\/fpls.2018.01785","journal-title":"Front Plant Sci"},{"key":"6531_CR112","doi-asserted-by":"publisher","first-page":"651","DOI":"10.1007\/s10886-012-0134-6","volume":"38","author":"SC Jung","year":"2012","unstructured":"Jung SC, Martinez-Medina A, Lopez-Raez JA, Pozo MJ (2012) Mycorrhiza-induced resistance and priming of plant defenses. J Chem Ecol 38:651\u2013664. https:\/\/doi.org\/10.1007\/s10886-012-0134-6","journal-title":"J Chem Ecol"},{"key":"6531_CR113","doi-asserted-by":"publisher","first-page":"670","DOI":"10.3390\/v11070670","volume":"11","author":"K Pechinger","year":"2019","unstructured":"Pechinger K, Chooi KM, MacDiarmid RM, Harper G, Ziegler A, Ziebell H (2019) A new era for mild strain cross-protection. Viruses 11:670. https:\/\/doi.org\/10.3390\/v11070670","journal-title":"Viruses"},{"key":"6531_CR114","doi-asserted-by":"publisher","first-page":"435","DOI":"10.1104\/pp.95.2.435","volume":"95","author":"M-J Cho","year":"1991","unstructured":"Cho M-J, Harper JE (1991) Effect of inoculation and nitrogen on isoflavonoid concentration in wild-type and nodulation-mutant soybean roots. Plant Physiol 95:435\u2013442","journal-title":"Plant Physiol"},{"key":"6531_CR115","doi-asserted-by":"publisher","first-page":"349","DOI":"10.17660\/ActaHortic.2000.510.56","volume":"510","author":"G Yarden","year":"2000","unstructured":"Yarden G, Hemo R, Livne H, Cohen J (2000) Cross-protection of cucurbitaceae from zucchini yellow mosaic potyvirus. Acta Hortic 510:349\u2013356. https:\/\/doi.org\/10.17660\/ActaHortic.2000.510.56","journal-title":"Acta Hortic"},{"key":"6531_CR116","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1111\/j.1365-3059.1994.tb01578.x","volume":"43","author":"JDA Hughes","year":"1994","unstructured":"Hughes JDA, Ollennu LAA (1994) Mild strain protection of cocoa in Ghana against cocoa swollen shoot virus\u2014a review. Plant Pathol 43:442\u2013457. https:\/\/doi.org\/10.1111\/j.1365-3059.1994.tb01578.x","journal-title":"Plant Pathol"},{"key":"6531_CR117","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1007\/s10658-010-9590-4","volume":"127","author":"MF Schenk","year":"2010","unstructured":"Schenk MF, Hamelink R, van der Vlugt RAA, Vermunt AMW, Kaarsenmaker RC, Stijger IC (2010) The use of attenuated isolates of Pepino mosaic virus for cross-protection. Eur J Plant Pathol 127:249\u2013261. https:\/\/doi.org\/10.1007\/s10658-010-9590-4","journal-title":"Eur J Plant Pathol"},{"key":"6531_CR118","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1016\/S0065-3527(10)76006-1","volume":"76","author":"H Ziebell","year":"2010","unstructured":"Ziebell H, Carr JP (2010) Cross-protection: A century of mystery. Adv Virus Res 76:211\u2013264. https:\/\/doi.org\/10.1016\/S0065-3527(10)76006-1","journal-title":"Adv Virus Res"},{"key":"6531_CR119","doi-asserted-by":"publisher","first-page":"174","DOI":"10.1111\/aab.12884","volume":"184","author":"Y Hernando","year":"2024","unstructured":"Hernando Y, Aranda MA (2024) Cross-protection against Pepino mosaic virus: more than a decade of efficient disease control. Ann Appl Biol 184:174\u2013182. https:\/\/doi.org\/10.1111\/aab.12884","journal-title":"Ann Appl Biol"},{"key":"6531_CR120","doi-asserted-by":"publisher","first-page":"2779","DOI":"10.3389\/fmicb.2018.02779","volume":"9","author":"MM Pooggin","year":"2018","unstructured":"Pooggin MM (2018) Small RNA-omics for plant virus identification, Virome reconstruction, and antiviral defense characterization. Front Microbiol 9:2779. https:\/\/doi.org\/10.3389\/fmicb.2018.02779","journal-title":"Front Microbiol"},{"key":"6531_CR121","doi-asserted-by":"publisher","first-page":"42","DOI":"10.3389\/fmicb.2018.00042","volume":"9","author":"EM Khalaf","year":"2018","unstructured":"Khalaf EM, Raizada MN (2018) Bacterial seed endophytes of domesticated cucurbits antagonize fungal and oomycete pathogens including powdery mildew. Front Microbiol 9:42. https:\/\/doi.org\/10.3389\/fmicb.2018.00042","journal-title":"Front Microbiol"},{"key":"6531_CR122","doi-asserted-by":"publisher","first-page":"33","DOI":"10.15407\/ubj86.03.033","volume":"86","author":"YR Sindarovska","year":"2014","unstructured":"Sindarovska YR (2014) Ribonuclease activity of buckwheat. Ukr Biochem J 86:33\u201340. https:\/\/doi.org\/10.15407\/ubj86.03.033","journal-title":"Ukr Biochem J"},{"key":"6531_CR123","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1016\/0014-5793(95)00901-K","volume":"372","author":"Y Watanabe","year":"1995","unstructured":"Watanabe Y, Ogawa T, Takahashi H, Ishida I, Takeuchi Y, Yamamoto M, Okada Y (1995) Resistance against multiple plant viruses in plants mediated by a double-stranded RNA-specific ribonuclease. FEBS Lett 372:165\u2013168. https:\/\/doi.org\/10.1016\/0014-5793(95)00901-K","journal-title":"FEBS Lett"},{"key":"6531_CR124","doi-asserted-by":"publisher","first-page":"499","DOI":"10.1016\/j.scienta.2013.10.015","volume":"164","author":"S Milo\u0161evi\u0107","year":"2013","unstructured":"Milo\u0161evi\u0107 S, Simonovi\u0107 A, Cingel A, Jevti\u0107 B, Stankovi\u0107 A, Petri\u0107 M, Trifunovi\u0107-Momo\u0161ilovi\u0107 T, Ninkovi\u0107 S (2013) Introduction of dsRNA-specific ribonuclease pac1 into Impatiens Walleriana provides resistance to tomato spotted wilt virus. Sci Hortic 164:499\u2013506. https:\/\/doi.org\/10.1016\/j.scienta.2013.10.015","journal-title":"Sci Hortic"},{"key":"6531_CR125","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1270\/jsbbs.55.49","volume":"55","author":"T Ogawa","year":"2005","unstructured":"Ogawa T, Toguri T, Kudoh H, Yamamoto M, Nishiguchi M (2005) Double-stranded RNA-specific ribonuclease confers tolerance against chrysanthemum stunt viroid and tomato spotted wilt virus in Transgenic chrysanthemum plants. Breed Sci 55:49\u201355. https:\/\/doi.org\/10.1270\/jsbbs.55.49","journal-title":"Breed Sci"},{"key":"6531_CR126","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1023\/A:1009697507261","volume":"3","author":"WG Langenberg","year":"1997","unstructured":"Langenberg WG, Zhang L, Court DL, Giunchedi L, Mitra A (1997) Transgenic tobacco plants expressing the bacterial Mc gene resist virus infection. Mol Breed 3:391\u2013399. https:\/\/doi.org\/10.1023\/A:1009697507261","journal-title":"Mol Breed"},{"key":"6531_CR127","doi-asserted-by":"publisher","first-page":"407","DOI":"10.5423\/PPJ.OA.05.2014.0039","volume":"30","author":"A Hameed","year":"2014","unstructured":"Hameed A, Iqbal Z, Asad S, Mansoor S (2014) Detection of multiple potato viruses in the field suggests synergistic interactions among potato viruses in Pakistan. Plant Pathol J 30:407\u2013415. https:\/\/doi.org\/10.5423\/PPJ.OA.05.2014.0039","journal-title":"Plant Pathol J"},{"key":"6531_CR128","doi-asserted-by":"publisher","unstructured":"Sorokan A, Cherepanova E, Burkhanova G, Veselova S, Rumyantsev S, Alekseev V (2020) Endophytic Bacillus spp. As a prospective biological tool for control of viral diseases and non-vector leptinotarsa decemlineata Say. In solanum tuberosum L. Front Microbiol 11:569457. https:\/\/doi.org\/10.3389\/fmicb.2020.569457","DOI":"10.3389\/fmicb.2020.569457"},{"key":"6531_CR129","doi-asserted-by":"publisher","first-page":"181","DOI":"10.2323\/jgam.2016.02.005","volume":"62","author":"V Ulyanova","year":"2016","unstructured":"Ulyanova V, Shah Mahmud R, Dudkina E, Ilinskaya O (2016) Phylogenetic distribution of extracellular guanyl-preferring ribonucleases renews taxonomic status of two Bacillus strains. J Gen Appl Microbiol 62:181\u2013188. https:\/\/doi.org\/10.2323\/jgam.2016.02.005","journal-title":"J Gen Appl Microbiol"},{"key":"6531_CR130","doi-asserted-by":"publisher","first-page":"4837623","DOI":"10.1155\/2018\/4837623","volume":"2018","author":"O Ilinskaya","year":"2018","unstructured":"Ilinskaya O, Ulyanova V, Lisevich I, Dudkina E, Zakharchenko N, Kusova A, Faizullin D (2018) The native monomer of Bacillus pumilus ribonuclease does not exist extracellularly. Biomed Res Int 2018:4837623. https:\/\/doi.org\/10.1155\/2018\/4837623","journal-title":"Biomed Res Int"},{"key":"6531_CR131","doi-asserted-by":"publisher","first-page":"6300","DOI":"10.5897\/AJMR12.1123","volume":"6","author":"J Yang","year":"2012","unstructured":"Yang J, Guo C, Zhai X, Shen L, Qian Y, Wang F (2012) Inactivation of tobacco mosaic virus in soil by Pseudomonas Putida A3-m strain to prevent virus mosaic disease. Afr J Microbiol Res 6:6300\u20136307. https:\/\/doi.org\/10.5897\/AJMR12.1123","journal-title":"Afr J Microbiol Res"},{"key":"6531_CR132","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s13059-017-1381-1","volume":"19","author":"R Aman","year":"2018","unstructured":"Aman R, Ali Z, Butt H, Mahas A, Aljedaani F, Khan MZ, Ding S, Mahfouz M (2018) RNA virus interference via CRISPR\/Cas13a system in plants. Genome Biol 19:1. https:\/\/doi.org\/10.1186\/s13059-017-1381-1","journal-title":"Genome Biol"},{"key":"6531_CR133","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.jviromet.2010.08.019","volume":"170","author":"A Pakniat-Jahromy","year":"2010","unstructured":"Pakniat-Jahromy A, Behjatnia SAA, Dry IB, Wilson E, Randles JW (2010) A new strategy for generating geminivirus-resistant plants using a DNA betasatellite\/split Barnase construct. J Virol Methods 170:57\u201366. https:\/\/doi.org\/10.1016\/j.jviromet.2010.08.019","journal-title":"J Virol Methods"},{"key":"6531_CR134","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1016\/j.ijbiomac.2013.07.005","volume":"61","author":"J Wang","year":"2013","unstructured":"Wang J, Wang HY, Xia XM, Zhang J, Li ZH (2013) Inhibitory effect of sulfated lentinan and lentinan against tobacco mosaic virus in tobacco seedlings. Int J Biol Macromol 61:264\u2013269. https:\/\/doi.org\/10.1016\/j.ijbiomac.2013.07.005","journal-title":"Int J Biol Macromol"},{"key":"6531_CR135","doi-asserted-by":"publisher","first-page":"e1005793","DOI":"10.1371\/journal.ppat.1005793","volume":"12","author":"YL Zhao","year":"2016","unstructured":"Zhao YL, Zhou TT, Guo HS (2016) Hyphopodium-specific VdNoxB\/VdPls1-dependent ROS\u2013Ca\u00b2\u207a signaling is required for plant infection by Verticillium dahliae. PLoS Pathog 12:e1005793. https:\/\/doi.org\/10.1371\/journal.ppat.1005793","journal-title":"PLoS Pathog"},{"key":"6531_CR136","doi-asserted-by":"publisher","first-page":"474","DOI":"10.1016\/j.ijbiomac.2015.01.058","volume":"75","author":"L Zhao","year":"2015","unstructured":"Zhao L, Hao X, Wu Y (2015) Inhibitory effect of polysaccharide peptide (PSP) against tobacco mosaic virus (TMV). Int J Biol Macromol 75:474\u2013478. https:\/\/doi.org\/10.1016\/j.ijbiomac.2015.01.058","journal-title":"Int J Biol Macromol"},{"key":"6531_CR137","first-page":"1240","volume":"49","author":"S Shen","year":"2009","unstructured":"Shen S, Li W, Ouyang M, Wu Z, Lin Q, Xie L (2009) Identification of two marine fungi and evaluation of their antivirus and antitumor activities. Acta Microbiol Sin 49:1240\u20131246","journal-title":"Acta Microbiol Sin"},{"key":"6531_CR138","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/j.pestbp.2014.04.008","volume":"111","author":"Y Han","year":"2014","unstructured":"Han Y, Luo Y, Qin S, Wang F, Liu S (2014) Induction of systemic resistance against tobacco mosaic virus by Ningnanmycin in tobacco. Pestic Biochem Physiol 111:14\u201318. https:\/\/doi.org\/10.1016\/j.pestbp.2014.04.008","journal-title":"Pestic Biochem Physiol"},{"key":"6531_CR139","doi-asserted-by":"publisher","first-page":"1156","DOI":"10.3390\/molecules24061156","volume":"24","author":"J Chen","year":"2019","unstructured":"Chen J, Liu H, Xia Z, Li B, Li Y (2019) Purification and structural analysis of the anti-TMV compound \u03b5-poly-L-lysine produced by Streptomyces ahygroscopicus. Molecules 24:1156. https:\/\/doi.org\/10.3390\/molecules24061156","journal-title":"Molecules"},{"key":"6531_CR140","doi-asserted-by":"publisher","first-page":"343","DOI":"10.3923\/ppj.2006.343.349","volume":"5","author":"AMM Galal","year":"2006","unstructured":"Galal AMM (2006) Induction of systemic acquired resistance in cucumber against cucumber mosaic virus by local Streptomyces strains. Plant Pathol J 5:343\u2013349. https:\/\/doi.org\/10.3923\/ppj.2006.343.349","journal-title":"Plant Pathol J"},{"key":"6531_CR141","doi-asserted-by":"publisher","first-page":"450","DOI":"10.1094\/MPMI.1999.12.5.450","volume":"12","author":"G De Meyer","year":"1999","unstructured":"De Meyer G, Capieau K, Audenaert K, Buchala A, M\u00e9traux JP, H\u00f6fte M (1999) Nanogram amounts of Salicylic acid produced by Pseudomonas aeruginosa 7NSK2 activate the systemic acquired resistance pathway in bean. Mol Plant Microbe Interact 12:450\u2013458","journal-title":"Mol Plant Microbe Interact"},{"key":"6531_CR142","doi-asserted-by":"publisher","first-page":"192","DOI":"10.1016\/j.scienta.2018.04.020","volume":"237","author":"T Li","year":"2018","unstructured":"Li T, Zhang X-Y, Huang Y, Xu Z-Y, Peng Y, Ma X-R (2018) An R2R3-MYB transcription factor, SlMYB28, involved in regulation of TYLCV infection in tomato. Sci Hortic 237:192\u2013200","journal-title":"Sci Hortic"},{"key":"6531_CR143","doi-asserted-by":"publisher","first-page":"416","DOI":"10.5897\/AJB11.1412","volume":"11","author":"S Selim","year":"2012","unstructured":"Selim S, Alfy S, Al-Ruwaili M, Abdo A, Jaouni SA (2012) Susceptibility of imipenem-resistant Pseudomonas aeruginosa to flavonoid glycosides of date palm (Phoenix dactylifera L.) Tamar. Afr J Biotechnol 11:416\u2013422. https:\/\/doi.org\/10.5897\/AJB11.1412","journal-title":"Afr J Biotechnol"},{"key":"6531_CR144","doi-asserted-by":"publisher","first-page":"620","DOI":"10.1098\/rsbl.2006.0499","volume":"2","author":"PT Lehtonen","year":"2006","unstructured":"Lehtonen PT, Helander M, Siddiqui SA, Lehto K, Saikkonen K (2006) Endophytic fungus decreases plant virus infections in meadow ryegrass (Lolium pratense). Biol Lett 2:620\u2013623. https:\/\/doi.org\/10.1098\/rsbl.2006.0499","journal-title":"Biol Lett"},{"key":"6531_CR145","doi-asserted-by":"publisher","first-page":"430","DOI":"10.1094\/PDIS.1997.81.5.430","volume":"81","author":"CL Schardl","year":"1997","unstructured":"Schardl CL, Phillips TD (1997) Protective grass endophytes: where are they from and where are they going? Plant Dis 81:430\u2013438. https:\/\/doi.org\/10.1094\/PDIS.1997.81.5.430","journal-title":"Plant Dis"},{"key":"6531_CR146","doi-asserted-by":"publisher","first-page":"1256","DOI":"10.1111\/j.1461-0248.2005.00834.x","volume":"8","author":"P Lehtonen","year":"2005","unstructured":"Lehtonen P, Helander M, Wink M, Sporer F, Saikkonen K (2005) Transfer of endophyte-origin defensive alkaloids from a grass to a hemiparasitic plant. Ecol Lett 8:1256\u20131263. https:\/\/doi.org\/10.1111\/j.1461-0248.2005.00834.x","journal-title":"Ecol Lett"},{"key":"6531_CR147","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1126\/science.1257147","volume":"346","author":"MK Jones","year":"2014","unstructured":"Jones MK, Watanabe M, Zhu S, Graves CL, Keyes LR, Grau KR, Gonzalez-Hernandez MB et al (2014) Enteric bacteria promote human and mouse Norovirus infection of B cells. Science 346:755\u2013759. https:\/\/doi.org\/10.1126\/science.1257147","journal-title":"Science"},{"key":"6531_CR148","doi-asserted-by":"publisher","first-page":"e0173124","DOI":"10.1371\/journal.pone.0173124","volume":"12","author":"EA Almand","year":"2017","unstructured":"Almand EA, Moore MD, Outlaw J, Jaykus LA (2017) Human Norovirus binding to select bacteria representative of the human gut microbiota. PLoS ONE 12:e0173124. https:\/\/doi.org\/10.1371\/journal.pone.0173124","journal-title":"PLoS ONE"},{"key":"6531_CR149","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1094\/PD-72-0375","volume":"72","author":"S-D Yeh","year":"1988","unstructured":"Yeh S-D (1988) Control of Papaya ringspot virus by cross protection. Plant Dis 72:375. https:\/\/doi.org\/10.1094\/PD-72-0375","journal-title":"Plant Dis"},{"key":"6531_CR150","doi-asserted-by":"publisher","first-page":"1388754","DOI":"10.3389\/fmicb.2024.1388754","volume":"15","author":"MK Khokhar","year":"2024","unstructured":"Khokhar MK, Kumar R, Kumar A et al (2024) Impact of IPM practices on microbial population and disease development in transplanted and direct-seeded rice. Front Microbiol 15:1388754. https:\/\/doi.org\/10.3389\/fmicb.2024.1388754","journal-title":"Front Microbiol"},{"key":"6531_CR151","doi-asserted-by":"publisher","unstructured":"Marrone PG (2021) Status and potential of bioprotection products for crop protection. Recent highlights in the discovery and optimization of crop protection products. Elsevier, pp 25\u201338. https:\/\/doi.org\/10.1016\/B978-0-12-821035-2.00002-4","DOI":"10.1016\/B978-0-12-821035-2.00002-4"},{"key":"6531_CR152","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1080\/10408690490911846","volume":"46","author":"F Magkos","year":"2006","unstructured":"Magkos F, Arvaniti F, Zampelas A (2006) Organic food: buying more safety or just peace of mind? A critical review of the literature. Crit Rev Food Sci Nutr 46:23\u201356. https:\/\/doi.org\/10.1080\/10408690490911846","journal-title":"Crit Rev Food Sci Nutr"},{"key":"6531_CR153","doi-asserted-by":"crossref","unstructured":"Li F, Duan T, Li Y (2020) Effects of the fungal endophyte Epichlo\u00eb festucae var. lolii on growth and physiological responses of perennial ryegrass to combined drought and pathogen stresses. Microorganisms 8:1917","DOI":"10.3390\/microorganisms8121917"},{"key":"6531_CR154","unstructured":"Zehnder GW, Yao C, Murphy JF, Sikora ER, Kloepper JW, Schuster DJ, Polston JE (1999) Microbe-induced resistance against pathogens and herbivores: evidence of effectiveness in agriculture. In: Agrawal AA, Tuzun S, Bent A (eds) Induced Plant Defences Against Pathogens and Herbivores: Biochemistry, Ecology and Agriculture. American Phytopathological Society Press, St Paul, MN, pp 335\u2013355."},{"key":"6531_CR155","doi-asserted-by":"publisher","unstructured":"Sorokan A, Cherepanova E, Burkhanova G et al (2020) Endophytic Bacillus spp. As a prospective biological tool for control of viral diseases and non-vector leptinotarsa decemlineata say in solanum tuberosum L. Front Microbiol 11:569457. https:\/\/doi.org\/10.3389\/fmicb.2020.569457","DOI":"10.3389\/fmicb.2020.569457"},{"key":"6531_CR156","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1038\/nrmicro1890","volume":"6","author":"S Miller","year":"2008","unstructured":"Miller S, Krijnse-Locker J (2008) Modification of intracellular membrane structures for virus replication. Nat Rev Microbiol 6:363\u2013374. https:\/\/doi.org\/10.1038\/nrmicro1890","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR157","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1038\/nrmicro.2017.173","volume":"16","author":"BJ Belin","year":"2018","unstructured":"Belin BJ, Busset N, Giraud E et al (2018) Hopanoid lipids: from membranes to plant-bacteria interactions. Nat Rev Microbiol 16:304\u2013315. https:\/\/doi.org\/10.1038\/nrmicro.2017.173","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR158","doi-asserted-by":"publisher","first-page":"2780","DOI":"10.1038\/s41467-021-23013-2","volume":"12","author":"M Wu","year":"2021","unstructured":"Wu M, Wei H, Tan H et al (2021) Plant DNA polymerases alpha and delta mediate replication of geminiviruses. Nat Commun 12:2780. https:\/\/doi.org\/10.1038\/s41467-021-23013-2","journal-title":"Nat Commun"},{"key":"6531_CR159","doi-asserted-by":"publisher","unstructured":"Prakash S, Kumari H, Minakshi, Kumar A (2024) Epigenetic regulation of fungal secondary metabolites for the enhancement of therapeutically active compounds. Fungi bioactive metabolites: integration of pharmaceutical applications. Springer, pp 605\u2013632. https:\/\/doi.org\/10.1007\/978-981-99-5696-8_19","DOI":"10.1007\/978-981-99-5696-8_19"},{"key":"6531_CR160","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1146\/annurev.phyto.40.120301.105642","volume":"40","author":"G Harper","year":"2002","unstructured":"Harper G, Hull R, Lockhart BEN, Olszewski N (2002) Viral sequences integrated into plant genomes. Annu Rev Phytopathol 40:119\u2013136","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR161","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1038\/nrmicro3117","volume":"11","author":"L Hanley-Bowdoin","year":"2013","unstructured":"Hanley-Bowdoin L, Bejarano ER, Robertson D, Mansoor S (2013) Geminiviruses: masters at redirecting and reprogramming plant processes. Nat Rev Microbiol 11:777\u2013788","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR162","doi-asserted-by":"publisher","first-page":"2159","DOI":"10.1111\/pbi.13896","volume":"20","author":"X Wang","year":"2022","unstructured":"Wang X, Wang M, Wang L et al (2022) Whole-plant Microbiome profiling reveals a novel geminivirus associated with soybean stay-green disease. Plant Biotechnol J 20:2159\u20132173","journal-title":"Plant Biotechnol J"},{"key":"6531_CR163","doi-asserted-by":"publisher","first-page":"5382","DOI":"10.1002\/ps.8892","volume":"81","author":"X Pan","year":"2025","unstructured":"Pan X, Lin W, Shen Y et al (2025) Hydrolase P1 in Bacillus velezensis HN-2 confers tobacco resistance by delaying TMV infection. Pest Manag Sci 81:5382\u20135393. https:\/\/doi.org\/10.1002\/ps.8892","journal-title":"Pest Manag Sci"},{"key":"6531_CR164","doi-asserted-by":"publisher","unstructured":"Mishra S, Singh A, Keswani C, Singh HB (2015) Harnessing plant\u2013microbe interactions for enhanced protection against phytopathogens. In: Plant\u2013Microbe Symbiosis: Applied Facets. pp 111\u2013125. https:\/\/doi.org\/10.1007\/978-81-322-2068-8_5","DOI":"10.1007\/978-81-322-2068-8_5"},{"key":"6531_CR165","doi-asserted-by":"publisher","first-page":"6535","DOI":"10.3390\/ijms24076535","volume":"24","author":"M D\u2019Accolti","year":"2023","unstructured":"D\u2019Accolti M, Soffritti I, Bini F, Mazzacane S, Caselli E (2023) Potential use of a combined bacteriophage\u2013probiotic sanitation system to control microbial contamination and AMR in healthcare settings: a pre-post intervention study. Int J Mol Sci 24:6535. https:\/\/doi.org\/10.3390\/ijms24076535","journal-title":"Int J Mol Sci"},{"key":"6531_CR166","doi-asserted-by":"publisher","first-page":"e00415","DOI":"10.1128\/AEM.00415-25","volume":"91","author":"BT Tadesse","year":"2025","unstructured":"Tadesse BT, Zhao S, Gu L et al (2025) Genome analysis reveals a biased distribution of virulence and antibiotic resistance genes in the genus Enterococcus and an abundance of safe species. Appl Environ Microbiol 91:e00415\u2013e00425. https:\/\/doi.org\/10.1128\/AEM.00415-25","journal-title":"Appl Environ Microbiol"},{"key":"6531_CR167","doi-asserted-by":"publisher","unstructured":"Allie F, Pierce EJ, Okoniewski MJ, Rey C (2014) Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell wall associated genes during infection. BMC Genomics 15. https:\/\/doi.org\/10.1186\/1471-2164-15-1006","DOI":"10.1186\/1471-2164-15-1006"},{"key":"6531_CR168","doi-asserted-by":"publisher","first-page":"2303","DOI":"10.3390\/IJMS23042303","volume":"23","author":"ZA Khan","year":"2022","unstructured":"Khan ZA, Kumar R, Dasgupta I (2022) CRISPR\/Cas-mediated resistance against viruses in plants. Int J Mol Sci 23:2303. https:\/\/doi.org\/10.3390\/IJMS23042303","journal-title":"Int J Mol Sci"},{"key":"6531_CR169","doi-asserted-by":"publisher","first-page":"101478","DOI":"10.1016\/j.isci.2020.101478","volume":"23","author":"D Schenke","year":"2020","unstructured":"Schenke D, Cai D (2020) Applications of CRISPR\/Cas to improve crop disease resistance: beyond inactivation of susceptibility factors. iScience 23:101478. https:\/\/doi.org\/10.1016\/j.isci.2020.101478","journal-title":"iScience"},{"key":"6531_CR170","doi-asserted-by":"publisher","first-page":"897680","DOI":"10.3389\/fpls.2022.897680","volume":"13","author":"I Salotti","year":"2022","unstructured":"Salotti I, Bve F, Rossi V (2022) Development and validation of a mechanistic, weather-based model for predicting Puccinia Graminis f. sp. tritici infections and stem rust progress in wheat. Front Plant Sci 13:897680. https:\/\/doi.org\/10.3389\/fpls.2022.897680","journal-title":"Front Plant Sci"},{"key":"6531_CR171","doi-asserted-by":"publisher","first-page":"908981","DOI":"10.3389\/fmicb.2022.908981","volume":"13","author":"C Yin","year":"2022","unstructured":"Yin C, Hagerty CH, Paulitz TC (2022) Synthetic microbial consortia derived from rhizosphere soil protect wheat against a soilborne fungal pathogen. Front Microbiol 13:908981. https:\/\/doi.org\/10.3389\/fmicb.2022.908981","journal-title":"Front Microbiol"},{"key":"6531_CR172","doi-asserted-by":"publisher","first-page":"112","DOI":"10.3389\/fpls.2018.00112","volume":"9","author":"MI Mhlongo","year":"2018","unstructured":"Mhlongo MI, Piater LA, Madala NE et al (2018) The chemistry of plant\u2013microbe interactions in the rhizosphere and the potential for metabolomics to reveal signaling related to defense priming and induced systemic resistance. Front Plant Sci 9:112. https:\/\/doi.org\/10.3389\/fpls.2018.00112","journal-title":"Front Plant Sci"},{"key":"6531_CR173","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1186\/s13567-025-01467-2","volume":"56","author":"J Lan","year":"2025","unstructured":"Lan J, Luo R, Liu D et al (2025) A novel high-throughput screen identifies phenazine-1-carboxylic acid as an inhibitor of African swine fever virus replication in primary Porcine alveolar macrophages. Vet Res 56:37. https:\/\/doi.org\/10.1186\/s13567-025-01467-2","journal-title":"Vet Res"},{"key":"6531_CR174","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jafc.4c08303","author":"J Huang","year":"2025","unstructured":"Huang J, Chen S, He W et al (2025) Phenazine-1-carboxylic acid has a broad-spectrum antifungal effect by targeting isocitrate lyase. J Agric Food Chem. https:\/\/doi.org\/10.1021\/acs.jafc.4c08303","journal-title":"J Agric Food Chem"},{"key":"6531_CR175","doi-asserted-by":"publisher","first-page":"1409","DOI":"10.1038\/s41477-023-01507-9","volume":"9","author":"HG Wen","year":"2023","unstructured":"Wen HG, Zhao JH, Zhang B, Sen et al (2023) Microbe-induced gene Silencing boosts crop protection against soil-borne fungal pathogens. Nat Plants 9:1409\u20131418. https:\/\/doi.org\/10.1038\/s41477-023-01507-9","journal-title":"Nat Plants"},{"key":"6531_CR176","doi-asserted-by":"publisher","first-page":"e1007740","DOI":"10.1371\/journal.ppat.1007740","volume":"15","author":"N Vannier","year":"2019","unstructured":"Vannier N, Agler M, Hacquard S (2019) Microbiota-mediated disease resistance in plants. PLoS Pathog 15:e1007740. https:\/\/doi.org\/10.1371\/journal.ppat.1007740","journal-title":"PLoS Pathog"},{"key":"6531_CR177","doi-asserted-by":"publisher","first-page":"51","DOI":"10.3389\/fpls.2020.00051","volume":"11","author":"SJ Fletcher","year":"2020","unstructured":"Fletcher SJ, Reeves PT, Hoang BT, Mitter N (2020) A perspective on RNAi-based biopesticides. Front Plant Sci 11:51. https:\/\/doi.org\/10.3389\/fpls.2020.00051","journal-title":"Front Plant Sci"},{"key":"6531_CR178","doi-asserted-by":"publisher","unstructured":"Wang T, Chen Q, Liang Q et al (2024) Bacillus suppresses nitrogen efficiency of soybean\u2013rhizobium symbiosis through regulation of nitrogen-related transcriptional and microbial patterns. Plant Cell Environ 47. https:\/\/doi.org\/10.1111\/pce.15023","DOI":"10.1111\/pce.15023"},{"key":"6531_CR179","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1186\/s40793-024-00595-0","volume":"19","author":"LG Moretti","year":"2024","unstructured":"Moretti LG, Crusciol CAC, Leite MFA et al (2024) Diverse bacterial consortia: key drivers of rhizosoil fertility modulating Microbiome functions, plant physiology, nutrition, and soybean grain yield. Environ Microbiome 19:15. https:\/\/doi.org\/10.1186\/s40793-024-00595-0","journal-title":"Environ Microbiome"},{"key":"6531_CR180","doi-asserted-by":"publisher","DOI":"10.22541\/au.171933709.97462270\/v2","author":"Y Chemla","year":"2024","unstructured":"Chemla Y, Sweeney CJ, Wozniak CA, Voigt CA (2024) Engineering bacteria for environmental release: regulatory challenges and design strategies. Authorea Preprints. https:\/\/doi.org\/10.22541\/au.171933709.97462270\/v2","journal-title":"Authorea Preprints"},{"key":"6531_CR181","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1186\/s12302-024-01017-1","volume":"36","author":"B Karao\u011flan","year":"2024","unstructured":"Karao\u011flan B, Alkassab AT, Borges S et al (2024) Microbial pesticides: challenges and future perspectives for non-target organism testing. Environ Sci Eur 36:40. https:\/\/doi.org\/10.1186\/s12302-024-01017-1","journal-title":"Environ Sci Eur"},{"key":"6531_CR182","doi-asserted-by":"publisher","first-page":"606","DOI":"10.1016\/j.tim.2015.07.009","volume":"23","author":"UG Mueller","year":"2015","unstructured":"Mueller UG, Sachs JL (2015) Engineering microbiomes to improve plant and animal health. Trends Microbiol 23:606\u2013617. https:\/\/doi.org\/10.1016\/j.tim.2015.07.009","journal-title":"Trends Microbiol"},{"key":"6531_CR183","doi-asserted-by":"publisher","first-page":"100272","DOI":"10.1016\/j.microb.2025.100272","volume":"6","author":"U Patyal","year":"2025","unstructured":"Patyal U, Bala R, Kaur M et al (2025) Phyto-microbiome engineering: designing plant\u2013microbe interactions for improved crop performance. Microbe 6:100272. https:\/\/doi.org\/10.1016\/j.microb.2025.100272","journal-title":"Microbe"},{"key":"6531_CR184","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1038\/s41579-020-0382-3","volume":"18","author":"K Tsai","year":"2020","unstructured":"Tsai K, Cullen BR (2020) Epigenetic and epitranscriptomic regulation of viral replication. Nat Rev Microbiol 18:559\u2013570. https:\/\/doi.org\/10.1038\/s41579-020-0382-3","journal-title":"Nat Rev Microbiol"},{"key":"6531_CR185","doi-asserted-by":"publisher","first-page":"e70066","DOI":"10.1111\/mpp.70066","volume":"26","author":"T Jiang","year":"2025","unstructured":"Jiang T, Hao T, Chen W et al (2025) Reprogrammed plant metabolism during viral infections: mechanisms, pathways and implications. Mol Plant Pathol 26:e70066. https:\/\/doi.org\/10.1111\/mpp.70066","journal-title":"Mol Plant Pathol"},{"key":"6531_CR186","doi-asserted-by":"publisher","first-page":"323","DOI":"10.3390\/ijms22010323","volume":"22","author":"R Kumar","year":"2020","unstructured":"Kumar R, Mehta D, Mishra N et al (2020) Role of host-mediated post-translational modifications (PTMs) in RNA virus pathogenesis. Int J Mol Sci 22:323. https:\/\/doi.org\/10.3390\/ijms22010323","journal-title":"Int J Mol Sci"},{"key":"6531_CR187","doi-asserted-by":"publisher","first-page":"1804","DOI":"10.3390\/agronomy13071804","volume":"13","author":"U Kumar","year":"2023","unstructured":"Kumar U, Raj S, Sreenikethanam A et al (2023) Multi-omics approaches in plant\u2013microbe interactions hold enormous promise for sustainable agriculture. Agronomy 13:1804. https:\/\/doi.org\/10.3390\/agronomy13071804","journal-title":"Agronomy"},{"key":"6531_CR188","doi-asserted-by":"publisher","first-page":"1289","DOI":"10.1093\/jxb\/erad448","volume":"75","author":"RN Kimotho","year":"2024","unstructured":"Kimotho RN, Maina S (2024) Unravelling plant\u2013microbe interactions: can integrated omics approaches offer concrete answers? J Exp Bot 75:1289\u20131313. https:\/\/doi.org\/10.1093\/jxb\/erad448","journal-title":"J Exp Bot"},{"key":"6531_CR189","doi-asserted-by":"publisher","first-page":"1289","DOI":"10.1093\/jxb\/erad448","volume":"75","author":"RN Kimotho","year":"2023","unstructured":"Kimotho RN, Maina S (2023) Unraveling plant\u2013microbe interactions: can integrated omics approaches offer concrete answers? J Exp Bot 75:1289. https:\/\/doi.org\/10.1093\/jxb\/erad448","journal-title":"J Exp Bot"},{"key":"6531_CR190","doi-asserted-by":"publisher","first-page":"2687","DOI":"10.1016\/j.csbj.2021.05.001","volume":"19","author":"MS Matchado","year":"2021","unstructured":"Matchado MS, Lauber M, Reitmeier S et al (2021) Network analysis methods for studying microbial communities: A mini review. Comput Struct Biotechnol J 19:2687\u20132698. https:\/\/doi.org\/10.1016\/j.csbj.2021.05.001","journal-title":"Comput Struct Biotechnol J"},{"key":"6531_CR191","doi-asserted-by":"publisher","first-page":"467","DOI":"10.3389\/fbioe.2020.00467","volume":"8","author":"AE Fadiji","year":"2020","unstructured":"Fadiji AE, Babalola OO (2020) Elucidating mechanisms of endophytes used in plant protection and other bioactivities with multifunctional prospects. Front Bioeng Biotechnol 8:467. https:\/\/doi.org\/10.3389\/fbioe.2020.00467","journal-title":"Front Bioeng Biotechnol"},{"key":"6531_CR192","doi-asserted-by":"publisher","unstructured":"Gerlin L, Genin S, Baroukh C (2025) Metabolic modeling of a plant\u2013pathogen interaction quantifies the metabolic bottlenecks underlying bacterial wilt. https:\/\/doi.org\/10.1101\/2024.12.12.628148","DOI":"10.1101\/2024.12.12.628148"},{"key":"6531_CR193","doi-asserted-by":"publisher","first-page":"101197","DOI":"10.1016\/j.ecoinf.2020.101197","volume":"61","author":"RC Joshi","year":"2021","unstructured":"Joshi RC, Kaushik M, Dutta MK et al (2021) VirLeafNet: automatic analysis and viral disease diagnosis using deep learning in vigna mungo. Ecol Inf 61:101197. https:\/\/doi.org\/10.1016\/j.ecoinf.2020.101197","journal-title":"Ecol Inf"},{"key":"6531_CR194","doi-asserted-by":"publisher","first-page":"1852","DOI":"10.3389\/fpls.2017.01852","volume":"8","author":"A Ramcharan","year":"2017","unstructured":"Ramcharan A, Baranowski K, McCloskey P et al (2017) Deep learning for image-based cassava disease detection. Front Plant Sci 8:1852. https:\/\/doi.org\/10.3389\/fpls.2017.01852","journal-title":"Front Plant Sci"},{"key":"6531_CR195","doi-asserted-by":"publisher","first-page":"638","DOI":"10.1007\/978-3-319-27863-6_59","volume":"9475","author":"Y Kawasaki","year":"2015","unstructured":"Kawasaki Y, Uga H, Kagiwada S, Iyatomi H (2015) Basic study of automated diagnosis of viral plant diseases using convolutional neural networks. Lect Notes Comput Sci 9475:638\u2013645. https:\/\/doi.org\/10.1007\/978-3-319-27863-6_59","journal-title":"Lect Notes Comput Sci"},{"key":"6531_CR196","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1007\/s13562-021-00732-7","volume":"31","author":"S Chakraborty","year":"2021","unstructured":"Chakraborty S, Kodamana H, Chakraborty S (2021) Deep learning aided automatic and reliable detection of tomato begomovirus infections in plants. J Plant Biochem Biotechnol 31:573\u2013580. https:\/\/doi.org\/10.1007\/s13562-021-00732-7","journal-title":"J Plant Biochem Biotechnol"},{"key":"6531_CR197","first-page":"259","volume":"13","author":"KU Kadam","year":"2020","unstructured":"Kadam KU (2020) Identification of groundnut bud necrosis virus on tomato fruits using machine learning based segmentation algorithm. Int J Fut Gener Commun Netw 13:259\u2013264","journal-title":"Int J Fut Gener Commun Netw"},{"key":"6531_CR198","doi-asserted-by":"publisher","first-page":"1673","DOI":"10.1093\/bioinformatics\/btab015","volume":"37","author":"S Posada-C\u00e9spedes","year":"2021","unstructured":"Posada-C\u00e9spedes S, Seifert D, Topolsky I et al (2021) V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data. Bioinformatics 37:1673\u20131680. https:\/\/doi.org\/10.1093\/bioinformatics\/btab015","journal-title":"Bioinformatics"},{"key":"6531_CR199","doi-asserted-by":"publisher","first-page":"1223","DOI":"10.1093\/bioinformatics\/btv714","volume":"32","author":"SK Kushwaha","year":"2016","unstructured":"Kushwaha SK, Chauhan P, Hedlund K, \u00c5hren D (2016) NBSPred: a support vector machine-based high-throughput pipeline for plant resistance protein NBS-LRR prediction. Bioinformatics 32:1223\u20131225. https:\/\/doi.org\/10.1093\/bioinformatics\/btv714","journal-title":"Bioinformatics"},{"key":"6531_CR200","doi-asserted-by":"publisher","first-page":"1168","DOI":"10.1016\/j.cell.2018.02.043","volume":"172","author":"Y-Z Zhang","year":"2018","unstructured":"Zhang Y-Z, Shi M, Holmes EC (2018) Using metagenomics to characterize an expanding virosphere. Cell 172:1168\u20131172. https:\/\/doi.org\/10.1016\/j.cell.2018.02.043","journal-title":"Cell"},{"key":"6531_CR201","doi-asserted-by":"publisher","first-page":"e97446","DOI":"10.1371\/journal.pone.0097446","volume":"9","author":"Z Jagga","year":"2014","unstructured":"Jagga Z, Gupta D (2014) Supervised learning classification models for prediction of plant virus-encoded RNA Silencing suppressors. PLoS ONE 9:e97446. https:\/\/doi.org\/10.1371\/journal.pone.0097446","journal-title":"PLoS ONE"},{"key":"6531_CR202","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1016\/j.molp.2020.01.008","volume":"13","author":"W Yang","year":"2020","unstructured":"Yang W, Feng H, Zhang X et al (2020) Crop phenomics and high-throughput phenotyping: past decades, current challenges, and future perspectives. Mol Plant 13:187\u2013214. https:\/\/doi.org\/10.1016\/j.molp.2020.01.008","journal-title":"Mol Plant"},{"key":"6531_CR203","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1146\/annurev-phyto-082712-102346","volume":"51","author":"C Bragard","year":"2013","unstructured":"Bragard C, Caciagli P, Lemaire O et al (2013) Status and prospects of plant virus control through interference with vector transmission. Annu Rev Phytopathol 51:177\u2013201. https:\/\/doi.org\/10.1146\/annurev-phyto-082712-102346","journal-title":"Annu Rev Phytopathol"},{"key":"6531_CR204","doi-asserted-by":"publisher","first-page":"2050","DOI":"10.1111\/gcb.16609","volume":"29","author":"MR Silverstein","year":"2023","unstructured":"Silverstein MR, Segr\u00e8 D, Bhatnagar JM (2023) Environmental Microbiome engineering for the mitigation of climate change. Glob Change Biol 29:2050\u20132066. https:\/\/doi.org\/10.1111\/gcb.16609","journal-title":"Glob Change Biol"},{"key":"6531_CR205","doi-asserted-by":"publisher","first-page":"12151","DOI":"10.1038\/ncomms12151","volume":"7","author":"MR Wagner","year":"2016","unstructured":"Wagner MR, Lundberg DS, Del Rio TG et al (2016) Host genotype and age shape the leaf and root microbiomes of a wild perennial plant. Nat Commun 7:12151. https:\/\/doi.org\/10.1038\/ncomms12151","journal-title":"Nat Commun"},{"key":"6531_CR206","doi-asserted-by":"publisher","first-page":"984","DOI":"10.1111\/1751-7915.12818","volume":"10","author":"K Timmis","year":"2017","unstructured":"Timmis K, de Vos WM, Ramos JL et al (2017) The contribution of microbial biotechnology to sustainable development goals. Microb Biotechnol 10:984\u2013987. https:\/\/doi.org\/10.1111\/1751-7915.12818","journal-title":"Microb Biotechnol"},{"key":"6531_CR207","doi-asserted-by":"publisher","first-page":"1207","DOI":"10.1016\/j.tibtech.2018.05.005","volume":"36","author":"MZ Khan","year":"2018","unstructured":"Khan MZ, Amin I, Hameed A, Mansoor S (2018) CRISPR\u2013Cas13a: prospects for plant virus resistance. Trends Biotechnol 36:1207\u20131210. https:\/\/doi.org\/10.1016\/j.tibtech.2018.05.005","journal-title":"Trends Biotechnol"},{"key":"6531_CR208","doi-asserted-by":"publisher","unstructured":"Chaudhary A, Singh RK, Bisht T et al (2025) CRISPR\/Cas system-based genome editing of crops and Microbiome to achieve food and nutrition security. Plant-Microbiome interactions for Climate-Resilient agriculture. Springer, pp 281\u2013319. https:\/\/doi.org\/10.1007\/978-981-96-3534-4_13","DOI":"10.1007\/978-981-96-3534-4_13"},{"key":"6531_CR209","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1186\/s12951-022-01423-8","volume":"20","author":"SH Nile","year":"2022","unstructured":"Nile SH, Thiruvengadam M, Wang Y et al (2022) Nano-priming as emerging seed priming technology for sustainable agriculture\u2014recent developments and future perspectives. J Nanobiotechnol 20:31. https:\/\/doi.org\/10.1186\/s12951-022-01423-8","journal-title":"J Nanobiotechnol"},{"key":"6531_CR210","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1007\/s11051-025-06314-1","volume":"27","author":"AA Guha","year":"2025","unstructured":"Guha AA, Harish S, Sendhilvel V et al (2025) Revamping the encapsulation of microbes and their metabolites to nanoscale: a strategy to enhance crop biocontrol. J Nanopart Res 27:117. https:\/\/doi.org\/10.1007\/s11051-025-06314-1","journal-title":"J Nanopart Res"},{"key":"6531_CR211","doi-asserted-by":"publisher","unstructured":"Lee GH, Ryu CM. Spraying of leaf-colonizing Bacillus amyloliquefaciens protects pepper from cucumber mosaic virus. Plant Dis. 2016 Oct;100(10):2099-2105. 10.1094\/PDIS-03-16-0314-RE. Epub 2016 Jul 13. PMID: 30682996. https:\/\/doi.org\/10.1094\/PDIS-03-16-0314-RE","DOI":"10.1094\/PDIS-03-16-0314-RE"},{"key":"6531_CR212","doi-asserted-by":"publisher","unstructured":"Wang S, Wu H, Qiao J, Ma L, Liu J, Xia Y, Gao X (2009) Molecular mechanism of plant growth promotion and induced systemic resistance to tobacco mosaic virus by Bacillus spp. J Microbiol Biotechnol 19:1250\u20131258 https:\/\/doi.org\/10.4014\/jmb.0901.008","DOI":"10.4014\/jmb.0901.008"},{"key":"6531_CR213","doi-asserted-by":"publisher","unstructured":"Sharipova M, Rockstroh A, Balaban N, Mardanova A, Toymentseva A, Tikhonova A, Vologin S, Stashevsky Z (2015) Antiviral effect of ribonuclease from Bacillus pumilus against phytopathogenic RNA viruses. Agric Sci 6:1357\u20131366. https:\/\/doi.org\/10.4236\/as.2015.611130","DOI":"10.4236\/as.2015.611130"},{"key":"6531_CR214","doi-asserted-by":"publisher","unstructured":"Lian L, Xie L, Zheng L, Lin Q (2011) Induction of systemic resistance in tobacco against tobacco mosaic virus by Bacillus spp. Biocontrol Sci Techn ol 21:281\u2013292. https:\/\/doi.org\/10.1080\/09583157.2010.543667","DOI":"10.1080\/09583157.2010.543667"},{"key":"6531_CR215","doi-asserted-by":"publisher","unstructured":"Abdelkhalek A, Al-Askar AA, Behiry SI (2020) Bacillus licheniformis strain POT1 mediated polyphenol biosynthetic pathway gene activation and systemic resistance in potato plants against alfalfa mosaic virus. Sci Rep 10:16120. https:\/\/doi.org\/10.1038\/s41598-020-72676-2","DOI":"10.1038\/s41598-020-72676-2"},{"key":"6531_CR216","doi-asserted-by":"publisher","unstructured":"Udaya Shankar AC, Chandra Nayaka S, Niranjan-Raj S, Bhuvanendra Kumar H, Reddy MS, Niranjana SR, Prakash HS (2009) Rhizobacteria-mediated resistance against the blackeye cowpea mosaic strain of bean common mosaic virus in cowpea (Vigna unguiculata). Pest Manag Sci 65:1059\u20131064. https:\/\/doi.org\/10.1002\/ps.1791","DOI":"10.1002\/ps.1791"},{"key":"6531_CR217","unstructured":"Mann EW (1969) Inhibition of tobacco mosaic virus by a bacterial extract. Phytopathology 59:658\u2013662."},{"key":"6531_CR218","doi-asserted-by":"publisher","unstructured":"Maurhofer M, Reimmann C, Schmidli-Sacherer P, Heeb S, Haas D, D\u00e9fago G (1998) Salicylic acid biosynthetic genes expressed in Pseudomonas fluorescens strain P3 improve the induction of systemic resistance in tobacco against tobacco necrosis virus. Phytopathology 88:678\u2013684. https:\/\/doi.org\/10.1094\/PHYTO.1998.88.7.678","DOI":"10.1094\/PHYTO.1998.88.7.678"},{"key":"6531_CR219","doi-asserted-by":"publisher","unstructured":"Kumar S, Chauhan PS, Agrawal L, Raj R, Srivastava A, Gupta S, Mishra SK, Yadav S, Singh PC, Raj SK et al (2016) Paenibacillus lentimorbus inoculation enhances tobacco growth and extenuates the virulence of cucumber mosaic virus. PLoS One 11:e0149980. https:\/\/doi.org\/10.1371\/journal.pone.0149980","DOI":"10.1371\/journal.pone.0149980"},{"key":"6531_CR220","doi-asserted-by":"crossref","unstructured":"Bergstrom GC, Johnson MC, Kuc J (1982) Effects of local infection of cucumber by Colletotrichum lagenarium, Pseudomonas lachrymans, or tobacco necrosis virus on systemic resistance to cucumber mosaic virus. Phytopathology 72:922\u2013926.","DOI":"10.1094\/Phyto-72-922"},{"key":"6531_CR221","doi-asserted-by":"crossref","unstructured":"Loebenstein G, Lovrekovich L (1966) Interference with tobacco mosaic virus local lesion formation in tobacco by injection of heat-killed cells of Pseudomonas syringae. Virology 30:587\u2013591.","DOI":"10.1016\/0042-6822(66)90162-0"},{"key":"6531_CR222","doi-asserted-by":"publisher","unstructured":"Lee G, Lee SH, Kim K et al (2017) Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens. Sci Rep 7:39432. https:\/\/doi.org\/10.1038\/srep39432","DOI":"10.1038\/srep39432"},{"key":"6531_CR223","doi-asserted-by":"publisher","unstructured":"Su P, Tan X, Li C, Zhang D, Cheng J, Zhang S, Zhou X, Yan Q, Peng J, Zhang Z, Liu Y, Lu X (2017) Photosynthetic bacterium Rhodopseudomonas palustris GJ-22 induces systemic resistance against viruses. Microb Biotechnol 10:612\u2013624. https:\/\/doi.org\/10.1111\/1751-7915.12704","DOI":"10.1111\/1751-7915.12704"},{"key":"6531_CR224","doi-asserted-by":"publisher","unstructured":"Ryu CM, Murphy JF, Mysore KS, Kloepper JW (2004) Plant growth-promoting rhizobacteria systemically protect Arabidopsis thaliana against cucumber mosaic virus by a salicylic acid- and NPR1-independent and jasmonic acid-dependent signaling pathway. Plant J 39:381\u2013392. https:\/\/doi.org\/10.1111\/j.1365-313X.2004.02142.x","DOI":"10.1111\/j.1365-313X.2004.02142.x"},{"key":"6531_CR225","doi-asserted-by":"publisher","unstructured":"Jaber LR, Salem NM (2014) Endophytic colonisation of squash by the fungal entomopathogen Beauveria bassiana (Ascomycota: Hypocreales) for managing zucchini yellow mosaic virus in cucurbits. Biocontrol Sci Technol 24:1096\u20131109 https:\/\/doi.org\/10.1080\/09583157.2014.923379","DOI":"10.1080\/09583157.2014.923379"},{"key":"6531_CR226","doi-asserted-by":"publisher","unstructured":"Gonz\u00e1lez-Mas N, Quesada-Moraga E, Plaza M, Fereres A, Moreno A (2019) Changes in feeding behaviour are not related to the reduction in the transmission rate of plant viruses by Aphis gossypii (Homoptera: Aphididae) to melon plants colonized by Beauveria bassiana (Ascomycota: Hypocreales). Biol Control 130:95\u2013103 https:\/\/doi.org\/10.1016\/j.biocontrol.2018.11.001","DOI":"10.1016\/j.biocontrol.2018.11.001"},{"key":"6531_CR227","doi-asserted-by":"publisher","unstructured":"Tomilova OG, Lednev GR, Volkova NS, Kozlova EG (2022) Effect of the endophytic colonization of Beauveria bassiana on the population density of peach aphid (Myzus persicae) and the growth parameters of plants. Vestn Zashch Rast 105:94\u201399. https:\/\/doi.org\/10.31993\/2308-6459-2022-105-2-15325","DOI":"10.31993\/2308-6459-2022-105-2-15325"},{"key":"6531_CR228","doi-asserted-by":"publisher","unstructured":"Garrido-Jurado I, Resqu\u00edn-Romero G, Amarilla SP et al (2017) Transient endophytic colonization of melon plants by entomopathogenic fungi after foliar application for the control of Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae). J Pest Sci 90:319\u2013330. https:\/\/doi.org\/10.1007\/s10340-016-0767-2","DOI":"10.1007\/s10340-016-0767-2"},{"key":"6531_CR229","doi-asserted-by":"publisher","unstructured":"Elsharkawy MM, Sumayli M, Alzahrani FA (2024) Elicitation of PVY resistance by Coniothyrium aleuritis. Phyton-Int J Exp Bot 93:3373\u20133385. https:\/\/doi.org\/10.32604\/phyton.2024.058875","DOI":"10.32604\/phyton.2024.058875"},{"key":"6531_CR230","doi-asserted-by":"publisher","unstructured":"Sun S, Wang Z, Zhang Z, Hoffmann AA, Guo H (2021) The roles of entomopathogenic fungal infection of viruliferous whiteflies in controlling tomato yellow leaf curl virus. Biol Control 156:104552. https:\/\/doi.org\/10.1016\/j.biocontrol.2021.104552","DOI":"10.1016\/j.biocontrol.2021.104552"},{"key":"6531_CR231","doi-asserted-by":"publisher","unstructured":"Elsharkawy MM, Alotibi FO, Al-Askar AA, Adnan M, Kamran M, Abdelkhalek A, Behiry SI, Saleem MH, Ahmad AA, Khedr AA (2022) Systemic resistance induction of potato and tobacco plants against potato virus Y by Klebsiella oxytoca. Life (Basel) 12:1521. https:\/\/doi.org\/10.3390\/life12101521","DOI":"10.3390\/life12101521"},{"key":"6531_CR232","doi-asserted-by":"publisher","unstructured":"Wang H, Zheng J, Ren X et al (2015) Effects of Piriformospora indica on the growth, fruit quality and interaction with tomato yellow leaf curl virus in tomato cultivars susceptible and resistant to TYLCV. Plant Growth Regul 76:303\u2013313. https:\/\/doi.org\/10.1007\/s10725-015-0025-2","DOI":"10.1007\/s10725-015-0025-2"},{"key":"6531_CR233","doi-asserted-by":"publisher","unstructured":"M M S, Thara SS (2022) Integrated management of cymbidium mosaic disease in commercial Dendrobium orchids using root endophytic fungus Piriformospora indica. Cogent Food Agric 8:2139848. https:\/\/doi.org\/10.1080\/23311932.2022.2139848","DOI":"10.1080\/23311932.2022.2139848"},{"key":"6531_CR234","doi-asserted-by":"publisher","unstructured":"Sinijadas K, Paul A, Radhika NS, Manju RV, Johnson JM (2023) Beneficial fungal root endophyte Piriformospora indica diminishes yield loss without compromising quality of banana fruits due to banana bract mosaic virus infection through better soil nutrient mobilization. Int J Plant Soil Sci 35:1397\u20131415. https:\/\/doi.org\/10.9734\/ijpss\/2023\/v35i193684","DOI":"10.9734\/ijpss\/2023\/v35i193684"},{"key":"6531_CR235","doi-asserted-by":"publisher","unstructured":"Kiarie S, Nyasani JO, Gohole LS, Maniania NK, Subramanian S (2020) Impact of fungal endophyte colonization of maize (Zea mays L.) on induced resistance to thrips- and aphid-transmitted viruses. Plants 9:416. https:\/\/doi.org\/10.3390\/plants9040416","DOI":"10.3390\/plants9040416"},{"key":"6531_CR236","doi-asserted-by":"publisher","unstructured":"Abdelkhalek A, Al-Askar AA, Arishi AA, Behiry SI (2022) Trichoderma hamatum strain Th23 promotes tomato growth and induces systemic resistance against tobacco mosaic virus. J Fungi (Basel) 8:228. https:\/\/doi.org\/10.3390\/jof8030228","DOI":"10.3390\/jof8030228"},{"key":"6531_CR237","doi-asserted-by":"publisher","unstructured":"Salami S, Koolivand D, Eini O, Hemmati R (2025) Effectiveness of Trichoderma harzianum in mitigating beet curly top Iran virus infection in tomato plants. Sci Rep 15:11377. https:\/\/doi.org\/10.1038\/s41598-025-96068-6","DOI":"10.1038\/s41598-025-96068-6"},{"key":"6531_CR238","doi-asserted-by":"publisher","unstructured":"Aseel DG, Soliman SA, Al-Askar AA, Elkelish A, Elbeaino T, Abdelkhalek A (2023) Trichoderma viride isolate Tvd44 enhances potato growth and stimulates the defense system against potato virus Y. Horticulturae 9:716. https:\/\/doi.org\/10.3390\/horticulturae9060716","DOI":"10.3390\/horticulturae9060716"},{"key":"6531_CR239","doi-asserted-by":"publisher","unstructured":"Folimonova SY (2013) Developing an understanding of cross-protection by citrus tristeza virus. Front Microbiol 4:76. https:\/\/doi.org\/10.3389\/fmicb.2013.00076","DOI":"10.3389\/fmicb.2013.00076"},{"key":"6531_CR240","doi-asserted-by":"publisher","unstructured":"Pan H, Chen G, Li F, Wu Q, Wang S, Xie W, Liu B, Xu B, Zhang Y (2013) Tomato spotted wilt virus infection reduces the fitness of a nonvector herbivore on pepper. J Econ Entomol 106:924\u2013928. https:\/\/doi.org\/10.1603\/EC12365","DOI":"10.1603\/EC12365"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-026-06531-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00705-026-06531-6","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-026-06531-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,3,31]],"date-time":"2026-03-31T13:02:07Z","timestamp":1774962127000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00705-026-06531-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,3,24]]},"references-count":240,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2026,4]]}},"alternative-id":["6531"],"URL":"https:\/\/doi.org\/10.1007\/s00705-026-06531-6","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"value":"0304-8608","type":"print"},{"value":"1432-8798","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,3,24]]},"assertion":[{"value":"20 November 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 January 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"24 March 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}],"article-number":"144"}}