{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,26]],"date-time":"2026-08-26T16:23:27Z","timestamp":1787761407420,"version":"build-2784847793"},"reference-count":58,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2026,4,13]],"date-time":"2026-04-13T00:00:00Z","timestamp":1776038400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,4,13]],"date-time":"2026-04-13T00:00:00Z","timestamp":1776038400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100002923","name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","doi-asserted-by":"publisher","award":["PIP11220200102657CO"],"award-info":[{"award-number":["PIP11220200102657CO"]}],"id":[{"id":"10.13039\/501100002923","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006668","name":"Fondo para la Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","doi-asserted-by":"publisher","award":["PICT-2020-SERIE A-03643"],"award-info":[{"award-number":["PICT-2020-SERIE A-03643"]}],"id":[{"id":"10.13039\/501100006668","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Secretaria de ciencia y tecnica, Universidad de la patagonia san juan bosco","award":["PI1888"],"award-info":[{"award-number":["PI1888"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Virol"],"published-print":{"date-parts":[[2026,5]]},"DOI":"10.1007\/s00705-026-06624-2","type":"journal-article","created":{"date-parts":[[2026,4,13]],"date-time":"2026-04-13T10:42:39Z","timestamp":1776076959000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Viral genotype and the pace of epidemic waves: an assessment from SARS-CoV 2 genomics and wastewater surveillance data"],"prefix":"10.1007","volume":"171","author":[{"given":"Leandro Roberto","family":"Jones","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julieta Soledad","family":"D\u2019Andrea","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julieta","family":"Levite","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mariela","family":"Brito","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8712-6666","authenticated-orcid":false,"given":"Julieta Marina","family":"Manrique","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,4,13]]},"reference":[{"key":"6624_CR1","doi-asserted-by":"publisher","first-page":"536","DOI":"10.1038\/s41564-020-0695-z","volume":"5","author":"AE Gorbalenya","year":"2020","unstructured":"Gorbalenya AE, Baker SC, Baric RS et al (2020) The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Nat Microbiol 5:536\u2013544. https:\/\/doi.org\/10.1038\/s41564-020-0695-z","journal-title":"Nat Microbiol"},{"key":"6624_CR2","doi-asserted-by":"publisher","first-page":"364","DOI":"10.3390\/pathogens12030364","volume":"12","author":"T Kwon","year":"2023","unstructured":"Kwon T, Osterrieder N, Gaudreault NN et al (2023) Fomite transmission of SARS-CoV-2 and its contributing factors. Pathogens 12:364. https:\/\/doi.org\/10.3390\/pathogens12030364","journal-title":"Pathogens"},{"key":"6624_CR3","doi-asserted-by":"publisher","first-page":"1430","DOI":"10.1016\/j.ajic.2023.04.170","volume":"51","author":"MB Termansen","year":"2023","unstructured":"Termansen MB, Frische S (2023) Fecal-oral transmission of SARS-CoV-2: A systematic review of evidence from epidemiological and experimental studies. Am J Infect Control 51:1430\u20131437. https:\/\/doi.org\/10.1016\/j.ajic.2023.04.170","journal-title":"Am J Infect Control"},{"key":"6624_CR4","doi-asserted-by":"publisher","first-page":"141364","DOI":"10.1016\/j.scitotenv.2020.141364","volume":"749","author":"DL Jones","year":"2020","unstructured":"Jones DL, Baluja MQ, Graham DW et al (2020) Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19. Sci Total Environ 749:141364. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.141364","journal-title":"Sci Total Environ"},{"key":"6624_CR5","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1007\/s15010-020-01531-3","volume":"49","author":"B Salzberger","year":"2020","unstructured":"Salzberger B, Buder F, Lampl B et al (2020) Epidemiology of SARS-CoV-2. Infection 49:233\u2013239. https:\/\/doi.org\/10.1007\/s15010-020-01531-3","journal-title":"Infection"},{"key":"6624_CR6","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/s12879-022-07192-x","volume":"22","author":"A De Bruyn","year":"2022","unstructured":"De Bruyn A, Verellen S, Bruckers L et al (2022) Secondary infection in COVID-19 critically ill patients: a retrospective single-center evaluation. BMC Infect Dis 22:207. https:\/\/doi.org\/10.1186\/s12879-022-07192-x","journal-title":"BMC Infect Dis"},{"key":"6624_CR7","doi-asserted-by":"publisher","first-page":"107078","DOI":"10.1016\/j.ijid.2024.107078","volume":"145","author":"HC Murray","year":"2024","unstructured":"Murray HC, Muleme M, Cooper D et al (2024) Prevalence, risk factors, and outcomes of secondary infections among hospitalized patients with COVID-19 or post\u2013COVID-19 conditions in Victoria, 2020\u20132023. Int J Infect Dis 145:107078. https:\/\/doi.org\/10.1016\/j.ijid.2024.107078","journal-title":"Int J Infect Dis"},{"key":"6624_CR8","doi-asserted-by":"publisher","first-page":"388","DOI":"10.3390\/pathogens13050388","volume":"13","author":"L Lupi","year":"2024","unstructured":"Lupi L, Vitiello A, Parolin C et al (2024) The Potential Role of Viral Persistence in the Post-Acute Sequelae of SARS-CoV-2 Infection (PASC). Pathogens 13:388. https:\/\/doi.org\/10.3390\/pathogens13050388","journal-title":"Pathogens"},{"key":"6624_CR9","doi-asserted-by":"publisher","unstructured":"Cacciapaglia G, Cot C, Sannino F (2021) Multiwave pandemic dynamics explained: how to tame the next wave of infectious diseases. Sci. Rep. 11. https:\/\/doi.org\/10.1038\/s41598-021-85875-2","DOI":"10.1038\/s41598-021-85875-2"},{"key":"6624_CR10","doi-asserted-by":"publisher","unstructured":"Chhibber-Goel J, Malhotra S, Krishnan NA et al. 2021 The profiles of first and second SARS-CoV-2 waves in the top ten COVID-19 affected countries. J Global Health Rep 5 https:\/\/doi.org\/10.29392\/001c.27143.","DOI":"10.29392\/001c.27143"},{"key":"6624_CR11","doi-asserted-by":"publisher","first-page":"1265","DOI":"10.1016\/s0140-6736(21)00632-2","volume":"397","author":"SJ Salyer","year":"2021","unstructured":"Salyer SJ, Maeda J, Sembuche S et al (2021) The first and second waves of the COVID-19 pandemic in Africa: a cross-sectional study. The Lancet 397:1265\u20131275. https:\/\/doi.org\/10.1016\/s0140-6736(21)00632-2","journal-title":"The Lancet"},{"key":"6624_CR12","doi-asserted-by":"publisher","first-page":"e476","DOI":"10.1016\/s2666-5247(22)00091-x","volume":"3","author":"H Abe","year":"2022","unstructured":"Abe H, Ushijima Y, Bikangui R et al (2022) Delays in the arrival of the waves of COVID-19: a comparison between Gabon and the African continent. Lancet Microbe 3:e476. https:\/\/doi.org\/10.1016\/s2666-5247(22)00091-x","journal-title":"Lancet Microbe"},{"key":"6624_CR13","doi-asserted-by":"publisher","first-page":"198785","DOI":"10.1016\/j.virusres.2022.198785","volume":"315","author":"LCJ Alcantara","year":"2022","unstructured":"Alcantara LCJ, Nogueira E, Shuab G et al (2022) SARS-CoV-2 epidemic in Brazil: how the displacement of variants has driven distinct epidemic waves. Virus Res 315:198785. https:\/\/doi.org\/10.1016\/j.virusres.2022.198785","journal-title":"Virus Res"},{"issue":"1","key":"6624_CR14","doi-asserted-by":"publisher","first-page":"21562","DOI":"10.1038\/s41598-024-72517-6","volume":"14","author":"H Jalal","year":"2024","unstructured":"Jalal H, Lee K, Burke DS (2024) Oscillating spatiotemporal patterns of COVID-19 in the United States. Sci Rep 14(1):21562. https:\/\/doi.org\/10.1038\/s41598-024-72517-6","journal-title":"Sci Rep"},{"key":"6624_CR15","doi-asserted-by":"publisher","first-page":"e78089","DOI":"10.7554\/elife.78089","volume":"12","author":"N Golding","year":"2023","unstructured":"Golding N, Price DJ, Ryan G et al (2023) A modelling approach to estimate the transmissibility of SARS-CoV-2 during periods of high, low, and zero case incidence. eLife 12:e78089. https:\/\/doi.org\/10.7554\/elife.78089","journal-title":"eLife"},{"key":"6624_CR16","doi-asserted-by":"publisher","first-page":"1983","DOI":"10.1128\/aem.54.8.1983-1988.1988","volume":"54","author":"GD Lewis","year":"1988","unstructured":"Lewis GD, Metcalf TG (1988) Polyethylene glycol precipitation for recovery of pathogenic viruses, including hepatitis A virus and human rotavirus, from oyster, water, and sediment samples. Appl Environ Microbiol 54:1983\u20131988. https:\/\/doi.org\/10.1128\/aem.54.8.1983-1988.1988","journal-title":"Appl Environ Microbiol"},{"key":"6624_CR17","doi-asserted-by":"publisher","first-page":"144105","DOI":"10.1016\/j.scitotenv.2020.144105","volume":"756","author":"PA Barril","year":"2021","unstructured":"Barril PA, Pianciola LA, Mazzeo M et al (2021) Evaluation of viral concentration methods for SARS-CoV-2 recovery from wastewaters. Sci Total Environ 756:144105. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.144105","journal-title":"Sci Total Environ"},{"key":"6624_CR18","doi-asserted-by":"publisher","first-page":"1654","DOI":"10.3201\/eid2608.201246","volume":"26","author":"X Lu","year":"2020","unstructured":"Lu X, Wang L, Sakthivel SK et al (2020) US CDC Real-Time Reverse Transcription PCR Panel for Detection of Severe Acute Respiratory Syndrome Coronavirus 2. Emerg Infect Dis 26:1654\u20131665. https:\/\/doi.org\/10.3201\/eid2608.201246","journal-title":"Emerg Infect Dis"},{"key":"6624_CR19","doi-asserted-by":"crossref","unstructured":"Acosta N, Bautista MA, Hollman J et al. 2021 A multicenter study investigating SARS-CoV-2 in tertiary-care hospital wastewater. viral burden correlates with increasing hospitalized cases as well as hospital-associated transmissions and outbreaks. Water Res 201:117369","DOI":"10.1016\/j.watres.2021.117369"},{"key":"6624_CR20","doi-asserted-by":"publisher","first-page":"9663","DOI":"10.1038\/s41598-025-94938-7","volume":"15","author":"T Saita","year":"2025","unstructured":"Saita T, Thitanuwat B, Niyomdecha N et al (2025) Measuring SARS-CoV-2 RNA in Bangkok wastewater treatment plants and estimating infected population after fully opening the country in 2023 Thailand. Sci Rep 15:9663. https:\/\/doi.org\/10.1038\/s41598-025-94938-7","journal-title":"Sci Rep"},{"key":"6624_CR21","doi-asserted-by":"publisher","first-page":"21658","DOI":"10.1038\/s41598-021-00900-8","volume":"11","author":"S Figueroa","year":"2021","unstructured":"Figueroa S, Freire-Paspuel B, Vega-Mari\u00f1o P et al (2021) High sensitivity-low cost detection of SARS-CoV-2 by two steps end point RT-PCR with agarose gel electrophoresis visualization. Sci Rep 11:21658. https:\/\/doi.org\/10.1038\/s41598-021-00900-8","journal-title":"Sci Rep"},{"key":"6624_CR22","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/0003-2697(83)90419-0","volume":"132","author":"D Tautz","year":"1983","unstructured":"Tautz D, Renz M (1983) An optimized freeze-squeeze method for the recovery of DNA fragments from agarose gels. Anal Biochem 132:14\u201319. https:\/\/doi.org\/10.1016\/0003-2697(83)90419-0","journal-title":"Anal Biochem"},{"key":"6624_CR23","doi-asserted-by":"publisher","first-page":"304","DOI":"10.7883\/yoken.jjid.2020.061","volume":"73","author":"K Shirato","year":"2020","unstructured":"Shirato K, Nao N, Katano H et al (2020) Development of Genetic Diagnostic Methods for Detection for Novel Coronavirus 2019(nCoV-2019) in Japan. Jpn J Infect Dis 73:304\u2013307. https:\/\/doi.org\/10.7883\/yoken.jjid.2020.061","journal-title":"Jpn J Infect Dis"},{"key":"6624_CR24","doi-asserted-by":"publisher","first-page":"498","DOI":"10.1128\/jcm.39.2.498-505.2001","volume":"39","author":"A Allard","year":"2001","unstructured":"Allard A, Albinsson B, Wadell G (2001) Rapid Typing of Human Adenoviruses by a General PCR Combined with Restriction Endonuclease Analysis. J Clin Microbiol 39:498\u2013505. https:\/\/doi.org\/10.1128\/jcm.39.2.498-505.2001","journal-title":"J Clin Microbiol"},{"key":"6624_CR25","unstructured":"R Core Team (2025). R: A Language and Environment for Statistical Computing. . https:\/\/www.R-project.org\/"},{"key":"6624_CR26","doi-asserted-by":"publisher","unstructured":"Kamvar ZN, Cai J, Pulliam JR et al. Epidemic curves made easy using the R package incidence. F1000Research 8:139 https:\/\/doi.org\/10.12688\/f1000research.18002.1.","DOI":"10.12688\/f1000research.18002.1"},{"key":"6624_CR27","unstructured":"Stevenson, M. & Sergeant, E. (2025). epiR: Tools for the Analysis of Epidemiological Data. R package version 2.0.82. https:\/\/CRAN.R-project.org\/package=epiR."},{"key":"6624_CR28","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1214\/ss\/1009213286","volume":"16","author":"LD Brown","year":"2001","unstructured":"Brown LD, Cai TT, DasGupta A (2001) Interval Estimation for a Binomial Proportion. Stat Sci 16:101\u2013133. https:\/\/doi.org\/10.1214\/ss\/1009213286","journal-title":"Stat Sci"},{"key":"6624_CR29","unstructured":"Hall T, 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT. In (Eds.)."},{"key":"6624_CR30","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/s0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W et al (1990) Basic local alignment search tool. J Mol Biol 215:403\u2013410. https:\/\/doi.org\/10.1016\/s0022-2836(05)80360-2","journal-title":"J Mol Biol"},{"key":"6624_CR31","doi-asserted-by":"publisher","first-page":"188","DOI":"10.1007\/s00705-023-05815-5","volume":"168","author":"V Bhanothu","year":"2023","unstructured":"Bhanothu V, Munne K, Pande S et al (2023) The dynamics of SARS-CoV-2 infection in unvaccinated and vaccinated populations in Mumbai, India, between 28 December 2020 and 30 August 2021. Arch Virol 168:188. https:\/\/doi.org\/10.1007\/s00705-023-05815-5","journal-title":"Arch Virol"},{"key":"6624_CR32","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1016\/j.ijmmb.2021.05.006","volume":"39","author":"K Munne","year":"2021","unstructured":"Munne K, Bhanothu V, Mayekar A et al (2021) A retrospective analysis of COVID-19 diagnosis results obtained by rapid antigen tests and RT-PCR: Implications for disease management. Indian J Med Microbi 39:537\u2013539. https:\/\/doi.org\/10.1016\/j.ijmmb.2021.05.006","journal-title":"Indian J Med Microbi"},{"key":"6624_CR33","doi-asserted-by":"publisher","first-page":"149578","DOI":"10.1016\/j.scitotenv.2021.149578","volume":"800","author":"ME Barrios","year":"2021","unstructured":"Barrios ME, D\u00edaz SM, Torres C et al (2021) Dynamics of SARS-CoV-2 in wastewater in three districts of the Buenos Aires metropolitan region, Argentina, throughout nine months of surveillance: A pilot study. Sci Total Environ 800:149578. https:\/\/doi.org\/10.1016\/j.scitotenv.2021.149578","journal-title":"Sci Total Environ"},{"key":"6624_CR34","doi-asserted-by":"publisher","first-page":"148887","DOI":"10.1016\/j.scitotenv.2021.148887","volume":"796","author":"M Giraud-Billoud","year":"2021","unstructured":"Giraud-Billoud M, Cuervo P, Altamirano JC et al (2021) Monitoring of SARS-CoV-2 RNA in wastewater as an epidemiological surveillance tool in Mendoza Argentina. Sci. Total Environ. 796:148887. https:\/\/doi.org\/10.1016\/j.scitotenv.2021.148887","journal-title":"Sci. Total Environ."},{"key":"6624_CR35","doi-asserted-by":"publisher","first-page":"118541","DOI":"10.1016\/j.watres.2022.118541","volume":"219","author":"G Masachessi","year":"2022","unstructured":"Masachessi G, Castro G, Cachi AM et al (2022) Wastewater based epidemiology as a silent sentinel of the trend of SARS-CoV-2 circulation in the community in central Argentina. Water Res 219:118541. https:\/\/doi.org\/10.1016\/j.watres.2022.118541","journal-title":"Water Res"},{"issue":"9","key":"6624_CR36","doi-asserted-by":"publisher","first-page":"372","DOI":"10.1007\/s11270-022-05772-w","volume":"233","author":"U Reno","year":"2022","unstructured":"Reno U, Regaldo L, Ojeda G et al (2022) Wastewater-Based Epidemiology: Detection of SARS-CoV-2 RNA in Different Stages of Domestic Wastewater Treatment in Santa Fe, Argentina. Water, Air, & Soil Pollut 233(9):372. https:\/\/doi.org\/10.1007\/s11270-022-05772-w","journal-title":"Water, Air, & Soil Pollut"},{"key":"6624_CR37","doi-asserted-by":"publisher","first-page":"160573","DOI":"10.1016\/j.scitotenv.2022.160573","volume":"862","author":"MC Cruz","year":"2023","unstructured":"Cruz MC, Sanguino-Jorquera D, Aparicio Gonz\u00e1lez M et al (2023) Sewershed surveillance as a tool for smart management of a pandemic in threshold countries Case study: Tracking SARS-CoV-2 during COVID-19 pandemic in a major urban metropolis in northwestern Argentina. Sci Total Environ 862:160573. https:\/\/doi.org\/10.1016\/j.scitotenv.2022.160573","journal-title":"Sci Total Environ"},{"key":"6624_CR38","doi-asserted-by":"publisher","first-page":"129848","DOI":"10.1016\/j.jhazmat.2022.129848","volume":"441","author":"X Li","year":"2023","unstructured":"Li X, Zhang S, Sherchan S et al (2023) Correlation between SARS-CoV-2 RNA concentration in wastewater and COVID-19 cases in community: A systematic review and meta-analysis. J Hazard Mater 441:129848. https:\/\/doi.org\/10.1016\/j.jhazmat.2022.129848","journal-title":"J Hazard Mater"},{"key":"6624_CR39","doi-asserted-by":"publisher","first-page":"e2300773","DOI":"10.1002\/jobm.202300773","volume":"64","author":"MC D\u2019Arpino","year":"2024","unstructured":"D\u2019Arpino MC, Sineli PE, Goroso G et al (2024) Wastewater monitoring of SARS-CoV-2 gene for COVID-19 epidemiological surveillance in Tucum\u00e1n Argentina. J. Basic Microbiol 64:e2300773. https:\/\/doi.org\/10.1002\/jobm.202300773","journal-title":"J. Basic Microbiol"},{"key":"6624_CR40","doi-asserted-by":"publisher","first-page":"3728","DOI":"10.1038\/s41598-024-54319-y","volume":"14","author":"O Thakali","year":"2024","unstructured":"Thakali O, Mercier \u00c9, Eid W et al (2024) Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation. Sci Rep 14:3728. https:\/\/doi.org\/10.1038\/s41598-024-54319-y","journal-title":"Sci Rep"},{"key":"6624_CR41","doi-asserted-by":"publisher","first-page":"003","DOI":"10.1093\/femsmc\/xtad003","volume":"4","author":"CC Naughton","year":"2023","unstructured":"Naughton CC, Roman FA, Alvarado AGF et al (2023) Show us the data: global COVID-19 wastewater monitoring efforts, equity, and gaps. FEMS Microbes 4:003. https:\/\/doi.org\/10.1093\/femsmc\/xtad003","journal-title":"FEMS Microbes"},{"key":"6624_CR42","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1093\/cid\/ciad618","volume":"78","author":"KS Appel","year":"2023","unstructured":"Appel KS, Geisler R, Maier D et al (2023) A Systematic Review of Predictor Composition, Outcomes, Risk of Bias, and Validation of COVID-19 Prognostic Scores. Clin Infect Dis 78:889\u2013899. https:\/\/doi.org\/10.1093\/cid\/ciad618","journal-title":"Clin Infect Dis"},{"issue":"6","key":"6624_CR43","doi-asserted-by":"publisher","first-page":"561","DOI":"10.1080\/23744235.2025.2465828","volume":"57","author":"A Spreco","year":"2025","unstructured":"Spreco A, Andersson C, Sj\u00f6dahl R et al (2025) 60-day mortality and the role of SARS-CoV-2 in hospital admissions of immunocompromised patients during later Omicron period: a population-based study in Sweden. Infect Dis 57(6):561\u201373. https:\/\/doi.org\/10.1080\/23744235.2025.2465828","journal-title":"Infect Dis"},{"key":"6624_CR44","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1038\/s41392-022-00997-x","volume":"7","author":"Y Fan","year":"2022","unstructured":"Fan Y, Li X, Zhang L et al (2022) SARS-CoV-2 Omicron variant: recent progress and future perspectives. Signal Transduct Target Ther 7:141. https:\/\/doi.org\/10.1038\/s41392-022-00997-x","journal-title":"Signal Transduct Target Ther"},{"key":"6624_CR45","doi-asserted-by":"publisher","first-page":"700","DOI":"10.1038\/s41586-022-04462-1","volume":"603","author":"R Suzuki","year":"2022","unstructured":"Suzuki R, Yamasoba D, Kimura I et al (2022) Attenuated fusogenicity and pathogenicity of SARS-CoV-2 Omicron variant. Nature 603:700\u2013705. https:\/\/doi.org\/10.1038\/s41586-022-04462-1","journal-title":"Nature"},{"key":"6624_CR46","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1007\/s15010-024-02438-z","volume":"53","author":"LR Pfrommer","year":"2024","unstructured":"Pfrommer LR, Diexer S, Klee B et al (2024) Post-COVID recovery is faster after an infection with the SARS-CoV-2 Omicron variant: a population-based cohort study. Infection 53:657\u2013665. https:\/\/doi.org\/10.1007\/s15010-024-02438-z","journal-title":"Infection"},{"key":"6624_CR47","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1016\/j.virol.2020.08.010","volume":"550","author":"LR Jones","year":"2020","unstructured":"Jones LR, Manrique JM (2020) Quantitative phylogenomic evidence reveals a spatially structured SARS-CoV-2 diversity. Virology 550:70\u201377. https:\/\/doi.org\/10.1016\/j.virol.2020.08.010","journal-title":"Virology"},{"key":"6624_CR48","doi-asserted-by":"publisher","first-page":"e01583","DOI":"10.1128\/jvi.01583-20","volume":"95","author":"F D\u00edez-Fuertes","year":"2021","unstructured":"D\u00edez-Fuertes F, Iglesias-Caballero M, Garc\u00eda-P\u00e9rez J et al (2021) A Founder Effect Led Early SARS-CoV-2 Transmission in Spain. J Virol 95:e01583-e1620. https:\/\/doi.org\/10.1128\/jvi.01583-20","journal-title":"J Virol"},{"key":"6624_CR49","doi-asserted-by":"publisher","first-page":"100021","DOI":"10.1016\/j.lana.2021.100021","volume":"1","author":"ARR Freitas","year":"2021","unstructured":"Freitas ARR, Beckedorff OA, Cavalcanti LPdG et al (2021) The emergence of novel SARS-CoV-2 variant P.1 in Amazonas (Brazil) was temporally associated with a change in the age and sex profile of COVID-19 mortality: A population based ecological study. Lancet Reg Health Am 1:100021. https:\/\/doi.org\/10.1016\/j.lana.2021.100021","journal-title":"Lancet Reg Health Am"},{"key":"6624_CR50","doi-asserted-by":"publisher","first-page":"e0078921","DOI":"10.1128\/spectrum.00789-21","volume":"9","author":"PE Romero","year":"2021","unstructured":"Romero PE, D\u00e1vila-Barclay A, Salvatierra G et al (2021) The Emergence of Sars-CoV-2 Variant Lambda (C.37) in South America. Microbiol Spectr 9:e0078921. https:\/\/doi.org\/10.1128\/spectrum.00789-21","journal-title":"Microbiol Spectr"},{"key":"6624_CR51","doi-asserted-by":"publisher","first-page":"438","DOI":"10.1038\/s41586-021-03402-9","volume":"592","author":"H Tegally","year":"2021","unstructured":"Tegally H, Wilkinson E, Giovanetti M et al (2021) Detection of a SARS-CoV-2 variant of concern in South Africa. Nature 592:438\u2013443. https:\/\/doi.org\/10.1038\/s41586-021-03402-9","journal-title":"Nature"},{"key":"6624_CR52","doi-asserted-by":"publisher","first-page":"069","DOI":"10.1093\/ve\/veac069","volume":"8","author":"E Ari","year":"2022","unstructured":"Ari E, V\u00e1s\u00e1rhelyi BM, Kemenesi G et al (2022) A single early introduction governed viral diversity in the second wave of SARS-CoV-2 epidemic in Hungary. Virus Evol 8:069. https:\/\/doi.org\/10.1093\/ve\/veac069","journal-title":"Virus Evol"},{"key":"6624_CR53","doi-asserted-by":"publisher","first-page":"e00119","DOI":"10.1128\/jvi.00119-21","volume":"95","author":"CM Voloch","year":"2021","unstructured":"Voloch CM, da Silva FR, de Almeida LGP et al (2021) Genomic Characterization of a Novel SARS-CoV-2 Lineage from Rio de Janeiro. Brazil. J. Virol. 95:e00119-e121. https:\/\/doi.org\/10.1128\/jvi.00119-21","journal-title":"Brazil. J. Virol."},{"key":"6624_CR54","doi-asserted-by":"publisher","first-page":"3055","DOI":"10.1126\/science.abg3055","volume":"372","author":"NG Davies","year":"2021","unstructured":"Davies NG, Abbott S, Barnard RC et al (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science 372:3055. https:\/\/doi.org\/10.1126\/science.abg3055","journal-title":"Science"},{"key":"6624_CR55","doi-asserted-by":"publisher","first-page":"2485840","DOI":"10.1080\/21645515.2025.2485840","volume":"21","author":"A Akingbola","year":"2025","unstructured":"Akingbola A, Adewole O, Adegbesan A et al (2025) From Wuhan to Omicron K.P2 strain: A comprehensive review of SARS-CoV-2 phylogeny and public health implications of the latest booster vaccine. Hum Vaccin Immunother 21:2485840. https:\/\/doi.org\/10.1080\/21645515.2025.2485840","journal-title":"Hum Vaccin Immunother"},{"key":"6624_CR56","doi-asserted-by":"publisher","first-page":"100583","DOI":"10.1016\/j.xcrm.2022.100583","volume":"3","author":"R Earnest","year":"2022","unstructured":"Earnest R, Uddin R, Matluk N et al (2022) Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA. Cell Rep Med 3:100583. https:\/\/doi.org\/10.1016\/j.xcrm.2022.100583","journal-title":"Cell Rep Med"},{"key":"6624_CR57","doi-asserted-by":"publisher","unstructured":"M, an der Heiden, Buchholz U (2022) Serial interval in households infected with SARS-CoV-2 variant B11529 (Omicron) is even shorter compared to Delta. Epidemiol Infect. 150:e165. https:\/\/doi.org\/10.1017\/s0950268822001248","DOI":"10.1017\/s0950268822001248"},{"key":"6624_CR58","doi-asserted-by":"publisher","first-page":"429","DOI":"10.1186\/s12879-023-08407-5","volume":"23","author":"ZJ Madewell","year":"2023","unstructured":"Madewell ZJ, Yang Y, Longini IM et al (2023) Rapid review and meta-analysis of serial intervals for SARS-CoV-2 Delta and Omicron variants. BMC Infect Dis 23:429. https:\/\/doi.org\/10.1186\/s12879-023-08407-5","journal-title":"BMC Infect Dis"}],"container-title":["Archives of Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-026-06624-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00705-026-06624-2","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00705-026-06624-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T14:49:59Z","timestamp":1778856599000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00705-026-06624-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,4,13]]},"references-count":58,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2026,5]]}},"alternative-id":["6624"],"URL":"https:\/\/doi.org\/10.1007\/s00705-026-06624-2","relation":{},"ISSN":["0304-8608","1432-8798"],"issn-type":[{"value":"0304-8608","type":"print"},{"value":"1432-8798","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,4,13]]},"assertion":[{"value":"2 December 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 April 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 April 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors have no relevant financial or non-financial interests to disclose.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"163"}}