{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T15:20:48Z","timestamp":1767626448298},"reference-count":39,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2019,4,5]],"date-time":"2019-04-05T00:00:00Z","timestamp":1554422400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"name":"Office of Science of the U.S. Department of Energy","award":["Contract No. DE-AC02-05CH11231"],"award-info":[{"award-number":["Contract No. DE-AC02-05CH11231"]}]},{"name":"Ministry of Science of Republic of Serbia","award":["III43004"],"award-info":[{"award-number":["III43004"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Extremophiles"],"published-print":{"date-parts":[[2019,7]]},"DOI":"10.1007\/s00792-019-01092-w","type":"journal-article","created":{"date-parts":[[2019,4,5]],"date-time":"2019-04-05T15:40:38Z","timestamp":1554478838000},"page":"399-405","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":12,"title":["High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals"],"prefix":"10.1007","volume":"23","author":[{"given":"Lidija","family":"Izrael-\u017divkovi\u0107","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vladimir","family":"Be\u0161koski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Milena","family":"Rikalovi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Snje\u017eana","family":"Kazazi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicole","family":"Shapiro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tanja","family":"Woyke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gordana","family":"Gojgi\u0107-Cvijovi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Miroslav M.","family":"Vrvi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nela","family":"Maksimovi\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ivanka","family":"Karad\u017ei\u0107","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2019,4,5]]},"reference":[{"key":"1092_CR1","doi-asserted-by":"publisher","first-page":"639","DOI":"10.2298\/JSC120831115A","volume":"78","author":"N Avramovi\u0107","year":"2013","unstructured":"Avramovi\u0107 N, Nikoli\u0107-Mandi\u0107 S, Karad\u017ei\u0107 I (2013) Influence of rhamnolipids, produced by Pseudomonas aeruginosa NCAIM(P), B001380 on Cr(VI) removal capacity in liquid medium. J Serb Chem Soc 78:639\u2013652","journal-title":"J Serb Chem Soc"},{"key":"1092_CR2","doi-asserted-by":"crossref","first-page":"4725","DOI":"10.1128\/JB.181.16.4725-4733.1999","volume":"181","author":"T Beveridge","year":"1999","unstructured":"Beveridge T (1999) Structures of gram-negative cell walls and their derived membrane vesicles. J Bacteriol 181:4725\u20134733","journal-title":"J Bacteriol"},{"key":"1092_CR3","doi-asserted-by":"publisher","first-page":"563","DOI":"10.1038\/nmeth.2474","volume":"10","author":"CS Chin","year":"2013","unstructured":"Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J (2013) Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563\u2013569","journal-title":"Nat Methods"},{"key":"1092_CR4","doi-asserted-by":"publisher","first-page":"709","DOI":"10.1099\/ijs.0.63753-0","volume":"56","author":"LL Clark","year":"2006","unstructured":"Clark LL, Dajcs JJ, McLean CH, Bartell JG, Stroman DW (2006) Pseudomonas otitidis sp. nov., isolated from patients with otic infections. Int J Syst Evol Microbiol 56:709\u2013714","journal-title":"Int J Syst Evol Microbiol"},{"key":"1092_CR5","doi-asserted-by":"publisher","first-page":"1397","DOI":"10.1016\/j.carbpol.2010.10.005","volume":"83","author":"A Dimitrijevi\u0107","year":"2011","unstructured":"Dimitrijevi\u0107 A, Veli\u010dkovi\u0107 D, Rikalovi\u0107 M, Avramovi\u0107 N, Milosavi\u0107 N, Jankov R, Karad\u017ei\u0107 I (2011) Simultaneous production of exopolysaccharide and lipase from extremophilic Pseudomonas aeruginosa san-ai strain: a novel approach for lipase immobilization and purification. Carbohyd Polym 83:1397\u20131401","journal-title":"Carbohyd Polym"},{"key":"1092_CR6","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1126\/science.1162986","volume":"323","author":"J Eid","year":"2009","unstructured":"Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A et al (2009) Real-time DNA sequencing from single polymerase molecules. Science 323:133\u2013138","journal-title":"Science"},{"key":"1092_CR7","doi-asserted-by":"publisher","first-page":"1045","DOI":"10.1099\/00221287-144-4-1045","volume":"144","author":"P Ferianc","year":"1998","unstructured":"Ferianc P, Farwell A, Nystrom T (1998) The cadmium-stress stimulon of Escherichia coli K. Microbiology 144:1045\u20131050","journal-title":"Microbiology"},{"key":"1092_CR8","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1038\/nbt1360","volume":"26","author":"D Field","year":"2008","unstructured":"Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P et al (2008) The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 26:541\u2013547","journal-title":"Nat Biotechnol"},{"key":"1092_CR9","first-page":"1","volume-title":"Bergey\u2019s manual of systematic bacteriology, part B","author":"GM Garrity","year":"2005","unstructured":"Garrity GM, Bell JA, Lilburn T (2005a) Phylum XIV. Proteobacteriaphyl. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds) Bergey\u2019s manual of systematic bacteriology, part B, vol 2, 2nd edn. Springer, New York, p 1","edition":"2"},{"key":"1092_CR10","first-page":"1","volume-title":"Bergey\u2019s manual of systematic bacteriology, part B","author":"GM Garrity","year":"2005","unstructured":"Garrity GM, Bell JA, Lilburn T (2005b) Class III. Gammaproteobacteria class. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds) Bergey\u2019s manual of systematic bacteriology, part B, vol 2, 2nd edn. Springer, New York, p 1","edition":"2"},{"key":"1092_CR11","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1007\/0-387-28022-7_9","volume-title":"Bergey\u2019s manual of systematic bacteriology, Second edition, volume 2, part B","author":"G Garrity","year":"2005","unstructured":"Garrity G, Bell J, Lilburn T (2005c) Order IX. Pseudomonadales. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds) Bergey\u2019s manual of systematic bacteriology, Second edition, volume 2, part B. Springer, New York, p 323"},{"key":"1092_CR12","doi-asserted-by":"publisher","first-page":"11226","DOI":"10.1016\/j.biortech.2011.09.076","volume":"102","author":"S Grbav\u010di\u0107","year":"2011","unstructured":"Grbav\u010di\u0107 S, Bezbradica D, Izrael-\u017divkovi\u0107 L, Avramovi\u0107 N, Milosavi\u0107 N, Karad\u017ei\u0107 I, Kne\u017eevi\u0107 Z (2011) Production of lipase and protease from an indigenous Pseudomonas aeruginosa strain and their evaluation as detergent additives: compatibility study with detergent ingredients and washing performance. Bioresource Technol 102:11226\u201311233","journal-title":"Bioresource Technol"},{"key":"1092_CR13","doi-asserted-by":"publisher","first-page":"439","DOI":"10.1093\/nar\/gkg006","volume":"31","author":"S Griffiths-Jones","year":"2003","unstructured":"Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR (2003) Rfam: an RNA family database. Nucleic Acids Res 31:439\u2013441","journal-title":"Nucleic Acids Res"},{"key":"1092_CR14","doi-asserted-by":"publisher","DOI":"10.4018\/978-1-4666-9734-8.ch005","author":"AU Hivrale","year":"2016","unstructured":"Hivrale AU, Pawar PK, Rane NJ, Govindwar SP (2016) Application of genomics and proteomics in bioremediation in toxicity and waste management using bioremediation. IGI Glob. https:\/\/doi.org\/10.4018\/978-1-4666-9734-8.ch005","journal-title":"IGI Glob"},{"key":"1092_CR15","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1186\/1471-2105-11-119","volume":"11","author":"D Hyatt","year":"2010","unstructured":"Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinf 11:119","journal-title":"BMC Bioinf"},{"key":"1092_CR16","doi-asserted-by":"publisher","first-page":"10549","DOI":"10.1039\/C8RA00371H","volume":"8","author":"L Izrael-Zivkovic","year":"2018","unstructured":"Izrael-Zivkovic L, Rikalovic M, Gojgic-Cvijovic G, Kazazic S, Vrvic M, Brceski I, Beskoski V, Loncarevic B, Gopcevic K, Karadzic I (2018) Cadmium specific proteomic responses of highly resistant Pseudomonas aeruginosa san ai. RSC Adv 8:10549\u201310560","journal-title":"RSC Adv"},{"key":"1092_CR17","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1007\/s12088-009-0012-2","volume":"49","author":"A Kapley","year":"2009","unstructured":"Kapley A, Purohit H (2009) Genomic tools in bioremediation. Indian J Microbiol 49:108\u2013113","journal-title":"Indian J Microbiol"},{"key":"1092_CR18","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/S1389-1723(04)00258-0","volume":"98","author":"I Karad\u017ei\u0107","year":"2004","unstructured":"Karad\u017ei\u0107 I, Masui A, Fujiwara N (2004) Purification and characterization of a protease from Pseudomonas aeruginosa grown in cutting oil. J Biosci Bioeng 98:145\u2013152","journal-title":"J Biosci Bioeng"},{"key":"1092_CR19","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1263\/jbb.102.82","volume":"102","author":"I Karad\u017ei\u0107","year":"2006","unstructured":"Karad\u017ei\u0107 I, Masui A, \u017divkovi\u0107 LI, Fujiwara N (2006) Purification and characterization of an alkaline lipase from Pseudomonas aeruginosa isolated from putrid mineral cutting oil as component of metalworking fluid. J Biosci Bioeng 102:82\u201389","journal-title":"J Biosci Bioeng"},{"key":"1092_CR20","doi-asserted-by":"publisher","first-page":"955","DOI":"10.1093\/nar\/25.5.955","volume":"25","author":"TM Lowe","year":"1997","unstructured":"Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955\u2013964","journal-title":"Nucleic Acids Res"},{"key":"1092_CR21","doi-asserted-by":"publisher","first-page":"2271","DOI":"10.1093\/bioinformatics\/btp393","volume":"25","author":"VM Markowitz","year":"2009","unstructured":"Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271\u20132278","journal-title":"Bioinformatics"},{"key":"1092_CR22","doi-asserted-by":"publisher","first-page":"775","DOI":"10.1111\/j.1472-765X.2009.02741.x","volume":"49","author":"CD Miller","year":"2009","unstructured":"Miller CD, Pettee B, Zhang C, Pabst M, McLean JE, Anderson AJ (2009) Copper and cadmium: responses in Pseudomonas putida KT2440. Lett Appl Microbiol 49:775\u2013783","journal-title":"Lett Appl Microbiol"},{"key":"1092_CR23","doi-asserted-by":"crossref","first-page":"1513","DOI":"10.1111\/j.1462-2920.2010.02181.x","volume":"12","author":"M Mulet","year":"2010","unstructured":"Mulet M, Lalucat J, Garc\u00eda-Vald\u00e9s E (2010) DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol 12:1513\u20131530","journal-title":"Environ Microbiol"},{"key":"1092_CR24","doi-asserted-by":"publisher","first-page":"1076","DOI":"10.1128\/AEM.01741-10","volume":"77","author":"M Mulet","year":"2011","unstructured":"Mulet M, David Z, Nogales B, Bosch R, Lalucat J, Garcia-Valdes E (2011) Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after Prestige oil spill. Appl Environ Microbiol 77:1076\u20131085","journal-title":"Appl Environ Microbiol"},{"key":"1092_CR25","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1128\/JB.6.3.263-273.1921","volume":"6","author":"S Orla-Jensen","year":"1921","unstructured":"Orla-Jensen S (1921) The main lines of the natural bacterial system. J Bacteriol 6:263\u2013273","journal-title":"J Bacteriol"},{"key":"1092_CR26","doi-asserted-by":"publisher","first-page":"2820","DOI":"10.1111\/j.1462-2920.2007.01394.x","volume":"9","author":"D Pag\u00e8s","year":"2007","unstructured":"Pag\u00e8s D, Sanchez L, Conrod S, Gidrol X, Fekete A, Schmitt-Kopplin P, Heulin T, Achouak W (2007) Exploration of intraclonal adaptation mechanisms of Pseudomonas brassicacearum facing cadmium toxicity. Environ Microbiol 9:2820\u20132835","journal-title":"Environ Microbiol"},{"key":"1092_CR27","first-page":"373","volume-title":"Bergey\u2019s manual of systematic bacteriology","author":"N Palleroni","year":"2005","unstructured":"Palleroni N (2005a) Genus I. Pseudomonas. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds) Bergey\u2019s manual of systematic bacteriology, 2nd edn. Springer, New York, pp 373\u2013377","edition":"2"},{"key":"1092_CR28","first-page":"323","volume-title":"Bergey\u2019s manual of systematic bacteriology","author":"N Palleroni","year":"2005","unstructured":"Palleroni N (2005b) Genus I. Pseudomonas. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds) Bergey\u2019s manual of systematic bacteriology, 2nd edn. Springer, New York, pp 323\u2013357","edition":"2"},{"key":"1092_CR29","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1038\/nmeth.1457","volume":"27","author":"A Pati","year":"2010","unstructured":"Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A (2010) GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods 27:455\u2013457","journal-title":"Nat Methods"},{"key":"1092_CR30","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1016\/j.scitotenv.2008.07.038","volume":"1406","author":"I Poirier","year":"2008","unstructured":"Poirier I, Jean N, Guary JC, Bertrand M (2008) Responses of the marine bacterium Pseudomonas fluorescens to an excess of heavy metals: physiological and biochemical aspects. Sci Total Environ 1406:76\u201387","journal-title":"Sci Total Environ"},{"key":"1092_CR31","doi-asserted-by":"publisher","first-page":"7188","DOI":"10.1093\/nar\/gkm864","volume":"35","author":"E Pruesse","year":"2007","unstructured":"Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188\u20137196","journal-title":"Nucleic Acids Res"},{"key":"1092_CR32","doi-asserted-by":"publisher","first-page":"673","DOI":"10.1007\/s11743-013-1462-4","volume":"16","author":"M Rikalovi\u0107","year":"2013","unstructured":"Rikalovi\u0107 M, Abdel-Mawgoud AM, D\u00e9zielE Gojgi\u0107-Cvijovi\u0107 G, Nestorovi\u0107 Z, Vrvi\u0107 M, Karad\u017ei\u0107 I (2013) Comparative analysis of rhamnolipids from novel environmental isolates of Pseudomonas aeruginosa. J Surfact Deterg 16:673\u2013682","journal-title":"J Surfact Deterg"},{"key":"1092_CR33","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1016\/j.biortech.2013.03.108","volume":"138","author":"R Singh","year":"2013","unstructured":"Singh R, Bishnoi NR, Kirrolia A (2013) Evaluation of Pseudomonas aeruginosa an innovative bioremediation tool in multi metals ions from simulated system using multi response methodology. Bioresour Technol 138:22\u2013234","journal-title":"Bioresour Technol"},{"key":"1092_CR34","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1099\/00207713-30-1-225","volume":"30","author":"VBD Skerman","year":"1980","unstructured":"Skerman VBD, McGowan V, Sneath PHA (1980) Approved lists of bacterial names. Int J Syst Bacteriol 30:225\u2013420","journal-title":"Int J Syst Bacteriol"},{"key":"1092_CR35","doi-asserted-by":"publisher","first-page":"959","DOI":"10.1038\/35023079","volume":"406","author":"CK Stover","year":"2000","unstructured":"Stover CK, Pham X, Erwin A, Mizoguchi S, Warrener P, Hickey M, Brinkman F, Hufnagle W, Kowalik D, Lagrou M (2000) Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959\u2013964","journal-title":"Nature"},{"key":"1092_CR36","doi-asserted-by":"publisher","first-page":"D596","DOI":"10.1093\/nar\/gkq869","volume":"39","author":"GL Winsor","year":"2011","unstructured":"Winsor GL, Lam D, Fleming L, Lo R, Whiteside M, Yu N, Hancock RE, Brinkman F (2011) Pseudomonas genome database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res 39:D596\u2013D600","journal-title":"Nucleic Acids Res"},{"key":"1092_CR37","doi-asserted-by":"publisher","first-page":"4576","DOI":"10.1073\/pnas.87.12.4576","volume":"87","author":"CR Woese","year":"1990","unstructured":"Woese CR (1990) Towards a natural system of organisms: proposal for the domains and eucarya. Proc Natl Acad Sci USA 87:4576\u20134579","journal-title":"Proc Natl Acad Sci USA"},{"key":"1092_CR38","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1146\/annurev-micro-090110-102815","volume":"65","author":"JM Wood","year":"2011","unstructured":"Wood JM (2011) Bacterial osmoregulation: a paradigm for the study of cellular homeostasis. Ann Rev Microbiol 65:215\u2013238","journal-title":"Ann Rev Microbiol"},{"issue":"29","key":"1092_CR39","first-page":"1","volume":"13","author":"X Xia","year":"2018","unstructured":"Xia X, Li J, Zhou Z, Wang D, Huang J, Wang G (2018) High-quality draft high genome sequence of the multiple heavy metal resistant bacterium PseudaminobactermanganicusJH-7. Stand Genomic Sci 13(29):1\u20138","journal-title":"Stand Genomic Sci"}],"container-title":["Extremophiles"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00792-019-01092-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00792-019-01092-w\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00792-019-01092-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,15]],"date-time":"2023-09-15T12:44:25Z","timestamp":1694781865000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00792-019-01092-w"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,4,5]]},"references-count":39,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2019,7]]}},"alternative-id":["1092"],"URL":"https:\/\/doi.org\/10.1007\/s00792-019-01092-w","relation":{},"ISSN":["1431-0651","1433-4909"],"issn-type":[{"value":"1431-0651","type":"print"},{"value":"1433-4909","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,4,5]]},"assertion":[{"value":"29 November 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"26 March 2019","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 April 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that there is no conflict of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}