{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T11:25:05Z","timestamp":1791285905197,"version":"4.1.0"},"update-to":[{"DOI":"10.1007\/s10096-013-1900-2","type":"retraction","label":"Retraction","source":"retraction-watch","updated":{"date-parts":[[2025,1,24]],"date-time":"2025-01-24T00:00:00Z","timestamp":1737676800000},"record-id":"60882"},{"DOI":"10.1007\/s10096-013-1900-2","type":"retraction","label":"Retraction","source":"publisher","updated":{"date-parts":[[2013,6,2]],"date-time":"2013-06-02T00:00:00Z","timestamp":1370131200000}}],"reference-count":40,"publisher":"Springer Science and Business Media LLC","issue":"11","license":[{"start":{"date-parts":[[2013,6,2]],"date-time":"2013-06-02T00:00:00Z","timestamp":1370131200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2013,6,2]],"date-time":"2013-06-02T00:00:00Z","timestamp":1370131200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Eur J Clin Microbiol Infect Dis"],"published-print":{"date-parts":[[2013,11]]},"DOI":"10.1007\/s10096-013-1900-2","type":"journal-article","created":{"date-parts":[[2013,6,1]],"date-time":"2013-06-01T03:58:09Z","timestamp":1370059089000},"page":"1471-1481","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":176,"title":["RETRACTED ARTICLE: Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample"],"prefix":"10.1007","volume":"32","author":[{"given":"A.","family":"Pfleiderer","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.-C.","family":"Lagier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"F.","family":"Armougom","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Robert","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B.","family":"Vialettes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.","family":"Raoult","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2013,6,2]]},"reference":[{"key":"1900_CR1","doi-asserted-by":"crossref","first-page":"2761","DOI":"10.1128\/JCM.01228-07","volume":"45","author":"JM Janda","year":"2007","unstructured":"Janda JM, Abbott SL (2007) 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 45:2761\u20132764","journal-title":"J Clin Microbiol"},{"key":"1900_CR2","doi-asserted-by":"crossref","first-page":"136","DOI":"10.3389\/fcimb.2012.00136","volume":"2","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, Million M, Hugon P, Armougom F, Raoult D (2012) Human gut microbiota: repertoire and variations. Front Cell Infect Microbiol 2:136","journal-title":"Front Cell Infect Microbiol"},{"key":"1900_CR3","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1016\/j.tim.2012.10.007","volume":"21","author":"S Singh","year":"2013","unstructured":"Singh S, Eldin C, Kowalczewska M, Raoult D (2013) Axenic culture of fastidious and intracellular bacteria. Trends Microbiol 21:92\u201399","journal-title":"Trends Microbiol"},{"key":"1900_CR4","doi-asserted-by":"crossref","first-page":"4430","DOI":"10.1073\/pnas.0812074106","volume":"106","author":"A Omsland","year":"2009","unstructured":"Omsland A, Cockrell DC, Howe D, Fischer ER, Virtaneva K, Sturdevant DE, Porcella SF, Heinzen RA (2009) Host cell-free growth of the Q fever bacterium Coxiella burnetii. Proc Natl Acad Sci U S A 106:4430\u20134434","journal-title":"Proc Natl Acad Sci U S A"},{"key":"1900_CR5","doi-asserted-by":"crossref","first-page":"2445","DOI":"10.1128\/AEM.01754-09","volume":"76","author":"D Nichols","year":"2010","unstructured":"Nichols D, Cahoon N, Trakhtenberg EM, Pham L, Mehta A, Belanger A, Kanigan T, Lewis K, Epstein SS (2010) Use of ichip for high-throughput in situ cultivation of \u201cuncultivable\u201d microbial species. Appl Environ Microbiol 76:2445\u20132450","journal-title":"Appl Environ Microbiol"},{"key":"1900_CR6","doi-asserted-by":"crossref","first-page":"6386","DOI":"10.1128\/AEM.01309-07","volume":"73","author":"A Bollmann","year":"2007","unstructured":"Bollmann A, Lewis K, Epstein SS (2007) Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl Environ Microbiol 73:6386\u20136390","journal-title":"Appl Environ Microbiol"},{"key":"1900_CR7","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1126\/science.1070633","volume":"296","author":"T Kaeberlein","year":"2002","unstructured":"Kaeberlein T, Lewis K, Epstein SS (2002) Isolating \u201cuncultivable\u201d microorganisms in pure culture in a simulated natural environment. Science 296:1127\u20131129","journal-title":"Science"},{"key":"1900_CR8","unstructured":"List of Prokaryotic names with Standing Nomenclature (LPSN). Available online at: http:\/\/www.bacterio.cict.fr"},{"key":"1900_CR9","doi-asserted-by":"crossref","first-page":"1185","DOI":"10.1111\/1469-0691.12023","volume":"18","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D (2012) Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect 18:1185\u20131193","journal-title":"Clin Microbiol Infect"},{"key":"1900_CR10","doi-asserted-by":"crossref","first-page":"346","DOI":"10.4056\/sigs.2776064","volume":"6","author":"S Kokcha","year":"2012","unstructured":"Kokcha S, Mishra AK, Lagier JC, Million M, Leroy Q, Raoult D, Fournier PE (2012) Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov. Stand Genomic Sci 6:346\u2013355","journal-title":"Stand Genomic Sci"},{"key":"1900_CR11","doi-asserted-by":"crossref","first-page":"233","DOI":"10.4056\/sigs.3256677","volume":"7","author":"S Kokcha","year":"2012","unstructured":"Kokcha S, Ramasamy D, Lagier JC, Robert C, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov. Stand Genomic Sci 7:233\u2013245","journal-title":"Stand Genomic Sci"},{"key":"1900_CR12","doi-asserted-by":"crossref","first-page":"258","DOI":"10.4056\/sigs.3316719","volume":"7","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, Ramasamy D, Rivet R, Raoult D, Fournier PE (2012) Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov. Stand Genomic Sci 7:258\u2013270","journal-title":"Stand Genomic Sci"},{"key":"1900_CR13","doi-asserted-by":"crossref","first-page":"200","DOI":"10.4056\/sigs.3086474","volume":"7","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, Gimenez G, Robert C, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. Stand Genomic Sci 7:200\u2013209","journal-title":"Stand Genomic Sci"},{"key":"1900_CR14","doi-asserted-by":"crossref","first-page":"116","DOI":"10.4056\/sigs.2415480","volume":"6","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, El Karkouri K, Nguyen TT, Armougom F, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. Stand Genomic Sci 6:116\u2013125","journal-title":"Stand Genomic Sci"},{"key":"1900_CR15","doi-asserted-by":"crossref","first-page":"315","DOI":"10.4056\/sigs.2685971","volume":"6","author":"JC Lagier","year":"2012","unstructured":"Lagier JC, Armougom F, Mishra AK, Nguyen TT, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. Stand Genomic Sci 6:315\u2013324","journal-title":"Stand Genomic Sci"},{"key":"1900_CR16","doi-asserted-by":"crossref","first-page":"304","DOI":"10.4056\/sigs.2625821","volume":"6","author":"AK Mishra","year":"2012","unstructured":"Mishra AK, Gimenez G, Lagier JC, Robert C, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Alistipes senegalensis sp. nov. Stand Genomic Sci 6:304\u2013314","journal-title":"Stand Genomic Sci"},{"key":"1900_CR17","first-page":"386","volume":"6","author":"AK Mishra","year":"2012","unstructured":"Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. Stand Genomic Sci 6:386\u2013395","journal-title":"Stand Genomic Sci"},{"key":"1900_CR18","doi-asserted-by":"crossref","first-page":"70","DOI":"10.4056\/sigs.3056450","volume":"7","author":"AK Mishra","year":"2012","unstructured":"Mishra AK, Lagier JC, Rivet R, Raoult D, Fournier PE (2012) Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov. Stand Genomic Sci 7:70\u201381","journal-title":"Stand Genomic Sci"},{"key":"1900_CR19","doi-asserted-by":"crossref","first-page":"1","DOI":"10.4056\/sigs.2956294","volume":"7","author":"AK Mishra","year":"2012","unstructured":"Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE (2012) Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. Stand Genomic Sci 7:1\u201311","journal-title":"Stand Genomic Sci"},{"key":"1900_CR20","doi-asserted-by":"crossref","first-page":"246","DOI":"10.4056\/sigs.3306717","volume":"7","author":"D Ramasamy","year":"2012","unstructured":"Ramasamy D, Kokcha S, Lagier JC, Nguyen TT, Raoult D, Fournier PE (2012) Genome sequence and description of Aeromicrobium massiliense sp. nov. Stand Genomic Sci 7:246\u2013257","journal-title":"Stand Genomic Sci"},{"key":"1900_CR21","doi-asserted-by":"crossref","first-page":"221","DOI":"10.4056\/sigs.3206554","volume":"7","author":"V Roux","year":"2012","unstructured":"Roux V, El Karkouri K, Lagier JC, Robert C, Raoult D (2012) Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov. Stand Genomic Sci 7:221\u2013232","journal-title":"Stand Genomic Sci"},{"key":"1900_CR22","doi-asserted-by":"crossref","first-page":"4745","DOI":"10.1128\/JB.00956-12","volume":"194","author":"A Gorlas","year":"2012","unstructured":"Gorlas A, Robert C, Gimenez G, Drancourt M, Raoult D (2012) Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species. J Bacteriol 194:4745","journal-title":"J Bacteriol"},{"key":"1900_CR23","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1016\/j.ijantimicag.2012.10.012","volume":"41","author":"G Dubourg","year":"2013","unstructured":"Dubourg G, Lagier JC, Armougom F, Robert C, Audoly G, Papazian L, Raoult D (2013) High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment. Int J Antimicrob Agents 41:149\u2013155","journal-title":"Int J Antimicrob Agents"},{"key":"1900_CR24","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1007\/s10096-012-1787-3","volume":"32","author":"G Dubourg","year":"2013","unstructured":"Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D (2013) The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics. Eur J Clin Microbiol Infect Dis 32:637\u2013645","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"1900_CR25","doi-asserted-by":"crossref","first-page":"e7125","DOI":"10.1371\/journal.pone.0007125","volume":"4","author":"F Armougom","year":"2009","unstructured":"Armougom F, Henry M, Vialettes B, Raccah D, Raoult D (2009) Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PLoS One 4:e7125","journal-title":"PLoS One"},{"key":"1900_CR26","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1099\/00222615-28-2-151","volume":"28","author":"M Dan","year":"1989","unstructured":"Dan M, Richardson J, Miliotis MD, Koornhof HJ (1989) Comparison of preservation media and freezing conditions for storage of specimens of faeces. J Med Microbiol 28:151\u2013154","journal-title":"J Med Microbiol"},{"key":"1900_CR27","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1086\/600885","volume":"49","author":"P Seng","year":"2009","unstructured":"Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543\u2013551","journal-title":"Clin Infect Dis"},{"key":"1900_CR28","first-page":"152","volume":"33","author":"E Stackebrandt","year":"2006","unstructured":"Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152\u2013155","journal-title":"Microbiol Today"},{"key":"1900_CR29","doi-asserted-by":"crossref","first-page":"e7063","DOI":"10.1371\/journal.pone.0007063","volume":"4","author":"B Dridi","year":"2009","unstructured":"Dridi B, Henry M, El Kh\u00e9chine A, Raoult D, Drancourt M (2009) High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS One 4:e7063","journal-title":"PLoS One"},{"key":"1900_CR30","doi-asserted-by":"crossref","first-page":"e27310","DOI":"10.1371\/journal.pone.0027310","volume":"6","author":"PD Schloss","year":"2011","unstructured":"Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6:e27310","journal-title":"PLoS One"},{"key":"1900_CR31","doi-asserted-by":"crossref","first-page":"7537","DOI":"10.1128\/AEM.01541-09","volume":"75","author":"PD Schloss","year":"2009","unstructured":"Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537\u20137541","journal-title":"Appl Environ Microbiol"},{"key":"1900_CR32","doi-asserted-by":"crossref","first-page":"1889","DOI":"10.1111\/j.1462-2920.2010.02193.x","volume":"12","author":"SM Huse","year":"2010","unstructured":"Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12:1889\u20131898","journal-title":"Environ Microbiol"},{"key":"1900_CR33","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.3390\/d2071015","volume":"2","author":"A Giongo","year":"2010","unstructured":"Giongo A, Davis-Richardson AG, Crab DB, Triplett EW (2010) TaxCollector: modifying current 16S rRNA databases for the rapid classification at six taxonomic levels. Diversity 2:1015\u20131025","journal-title":"Diversity"},{"key":"1900_CR34","doi-asserted-by":"crossref","first-page":"422","DOI":"10.3201\/eid1803.111481","volume":"18","author":"R Schlaberg","year":"2012","unstructured":"Schlaberg R, Simmon KE, Fisher MA (2012) A systematic approach for discovering novel, clinically relevant bacteria. Emerg Infect Dis 18:422\u2013430","journal-title":"Emerg Infect Dis"},{"key":"1900_CR35","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13:2498\u20132504","journal-title":"Genome Res"},{"key":"1900_CR36","doi-asserted-by":"crossref","first-page":"e200","DOI":"10.1093\/nar\/gkq873","volume":"38","author":"MJ Claesson","year":"2010","unstructured":"Claesson MJ, Wang Q, O\u2019Sullivan O, Greene-Diniz R, Cole JR, Ross RP, O\u2019Toole PW (2010) Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 38:e200","journal-title":"Nucleic Acids Res"},{"key":"1900_CR37","doi-asserted-by":"crossref","unstructured":"Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D (2013) The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples. Eur J Clin Microbiol Infect Dis [Epub ahead of print]","DOI":"10.1007\/s10096-013-1843-7"},{"key":"1900_CR38","doi-asserted-by":"crossref","first-page":"568","DOI":"10.1128\/AEM.17.4.568-576.1969","volume":"17","author":"A Arank","year":"1969","unstructured":"Arank A, Syed SA, Kenney EB, Freter R (1969) Isolation of anaerobic bacteria from human gingiva and mouse cecum by means of a simplified glove box procedure. Appl Microbiol 17:568\u2013576","journal-title":"Appl Microbiol"},{"key":"1900_CR39","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1128\/AEM.22.4.522-529.1971","volume":"22","author":"C Eller","year":"1971","unstructured":"Eller C, Crabill MR, Bryant MP (1971) Anaerobic roll tube media for nonselective enumeration and isolation of bacteria in human feces. Appl Microbiol 22:522\u2013529","journal-title":"Appl Microbiol"},{"key":"1900_CR40","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1136\/jcp.33.1.61","volume":"33","author":"MW Wren","year":"1980","unstructured":"Wren MW (1980) Multiple selective media for the isolation of anaerobic bacteria from clinical specimens. J Clin Pathol 33:61\u201365","journal-title":"J Clin Pathol"}],"updated-by":[{"DOI":"10.1007\/s10096-013-1900-2","type":"retraction","label":"Retraction","source":"retraction-watch","updated":{"date-parts":[[2025,1,24]],"date-time":"2025-01-24T00:00:00Z","timestamp":1737676800000},"record-id":"60882"},{"DOI":"10.1007\/s10096-013-1900-2","type":"retraction","label":"Retraction","source":"publisher","updated":{"date-parts":[[2013,6,2]],"date-time":"2013-06-02T00:00:00Z","timestamp":1370131200000}}],"container-title":["European Journal of Clinical Microbiology & Infectious Diseases"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-013-1900-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10096-013-1900-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-013-1900-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-013-1900-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,24]],"date-time":"2025-01-24T05:13:26Z","timestamp":1737695606000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10096-013-1900-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,6,2]]},"references-count":40,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2013,11]]}},"alternative-id":["1900"],"URL":"https:\/\/doi.org\/10.1007\/s10096-013-1900-2","relation":{"retraction":[{"id-type":"doi","id":"10.1007\/s10096-013-1900-2","asserted-by":"object"}]},"ISSN":["0934-9723","1435-4373"],"issn-type":[{"value":"0934-9723","type":"print"},{"value":"1435-4373","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,6,2]]},"assertion":[{"value":"14 March 2013","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 May 2013","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"2 June 2013","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}