{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T03:26:37Z","timestamp":1740108397001,"version":"3.37.3"},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"7","license":[{"start":{"date-parts":[[2017,2,20]],"date-time":"2017-02-20T00:00:00Z","timestamp":1487548800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["568971"],"award-info":[{"award-number":["568971"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Eur J Clin Microbiol Infect Dis"],"published-print":{"date-parts":[[2017,7]]},"DOI":"10.1007\/s10096-017-2935-6","type":"journal-article","created":{"date-parts":[[2017,2,20]],"date-time":"2017-02-20T14:42:28Z","timestamp":1487601748000},"page":"1297-1303","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["A snapshot of Chlamydia trachomatis genetic diversity using multilocus sequence type analysis in an Australian metropolitan setting"],"prefix":"10.1007","volume":"36","author":[{"given":"J. A.","family":"Danielewski","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Phillips","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"F. Y. S.","family":"Kong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"K. S.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J. S.","family":"Hocking","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R.","family":"Guy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C. K.","family":"Fairley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S. M.","family":"Garland","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S. N.","family":"Tabrizi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2017,2,20]]},"reference":[{"key":"2935_CR1","unstructured":"World Health Organization (WHO) (2012) Global incidence and prevalence of selected curable sexually transmitted infections\u20142008. WHO, Geneva. Available online at: http:\/\/www.who.int\/reproductivehealth\/publications\/rtis\/2008_STI_estimates.pdf"},{"issue":"7","key":"2935_CR2","doi-asserted-by":"crossref","first-page":"363","DOI":"10.5694\/j.1326-5377.1995.tb139939.x","volume":"162","author":"SM Garland","year":"1995","unstructured":"Garland SM, Malatt A, Tabrizi S, Grando D, Lees MI, Andrew JH, Taylor HR (1995) Chlamydia trachomatis conjunctivitis. Prevalence and association with genital tract infection. Med J Aust 162(7):363\u2013366","journal-title":"Med J Aust"},{"issue":"2","key":"2935_CR3","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1097\/00007435-200302000-00013","volume":"30","author":"WM Geisler","year":"2003","unstructured":"Geisler WM, Suchland RJ, Whittington WL, Stamm WE (2003) The relationship of serovar to clinical manifestations of urogenital Chlamydia trachomatis infection. Sex Transm Dis 30(2):160\u2013165","journal-title":"Sex Transm Dis"},{"key":"2935_CR4","doi-asserted-by":"publisher","first-page":"10688","DOI":"10.1038\/ncomms10688","volume":"7","author":"P Andersson","year":"2016","unstructured":"Andersson P, Harris SR, Seth Smith HM, Hadfield J, O\u2019Neill C, Cutcliffe LT, Douglas FP, Asche LV, Mathews JD, Hutton SI, Sarovich DS, Tong SY, Clarke IN, Thomson NR, Giffard PM (2016) Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nat Commun 7:10688. doi: 10.1038\/ncomms10688","journal-title":"Nat Commun"},{"key":"2935_CR5","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1186\/1471-2334-12-113","volume":"12","author":"D Lewis","year":"2012","unstructured":"Lewis D, Newton DC, Guy RJ, Ali H, Chen MY, Fairley CK, Hocking JS (2012) The prevalence of Chlamydia trachomatis infection in Australia: a systematic review and meta-analysis. BMC Infect Dis 12:113. doi: 10.1186\/1471-2334-12-113","journal-title":"BMC Infect Dis"},{"issue":"8","key":"2935_CR6","doi-asserted-by":"publisher","first-page":"2844","DOI":"10.1128\/JCM.00128-11","volume":"49","author":"RJ Bom","year":"2011","unstructured":"Bom RJ, Christerson L, Schim van der Loeff MF, Coutinho RA, Herrmann B, Bruisten SM (2011) Evaluation of high-resolution typing methods for Chlamydia trachomatis in samples from heterosexual couples. J Clin Microbiol 49(8):2844\u20132853. doi: 10.1128\/JCM.00128-11","journal-title":"J Clin Microbiol"},{"issue":"6","key":"2935_CR7","doi-asserted-by":"publisher","first-page":"2060","DOI":"10.1128\/JCM.02308-09","volume":"48","author":"MP Stevens","year":"2010","unstructured":"Stevens MP, Twin J, Fairley CK, Donovan B, Tan SE, Yu J, Garland SM, Tabrizi SN (2010) Development and evaluation of an ompA quantitative real-time PCR assay for Chlamydia trachomatis serovar determination. J Clin Microbiol 48(6):2060\u20132065. doi: 10.1128\/JCM.02308-09","journal-title":"J Clin Microbiol"},{"issue":"7","key":"2935_CR8","doi-asserted-by":"publisher","first-page":"2172","DOI":"10.1128\/JCM.00249-15","volume":"53","author":"B Herrmann","year":"2015","unstructured":"Herrmann B, Isaksson J, Ryberg M, T\u00e5ngrot J, Saleh I, Versteeg B, Gravningen K, Bruisten S (2015) Global multilocus sequence type analysis of Chlamydia trachomatis strains from 16 countries. J Clin Microbiol 53(7):2172\u20132179. doi: 10.1128\/JCM.00249-15","journal-title":"J Clin Microbiol"},{"key":"2935_CR9","doi-asserted-by":"crossref","unstructured":"Smith KS, Guy R, Danielewski JA, Tabrizi SN, Chen M, Kaldor JM, Hocking JS (2015) High chlamydia treatment failure rates in men who have sex with men. In: Proceedings of the World STI & HIV Congress, Brisbane, Australia, September 2015, p O15.13","DOI":"10.1136\/sextrans-2015-052270.161"},{"key":"2935_CR10","doi-asserted-by":"crossref","unstructured":"Smith KS GR, Danielewski JA, Tabrizi SN, Fairley CK, McNulty AM, Rawlinson W, Saville M, Garland SM, Donovan B, Kaldor JM, Hocking JS (2017) Biological and behavioural factors associated with positive chlamydia retests. Sex Transm Dis (in press)","DOI":"10.1097\/OLQ.0000000000000616"},{"issue":"6","key":"2935_CR11","doi-asserted-by":"publisher","first-page":"969","DOI":"10.1093\/infdis\/jit275","volume":"208","author":"RJ Bom","year":"2013","unstructured":"Bom RJ, Matser A, Bruisten SM, van Rooijen MS, Heijman T, Morr\u00e9 SA, de Vries HJ, Schim van der Loeff MF (2013) Multilocus sequence typing of Chlamydia trachomatis among men who have sex with men reveals cocirculating strains not associated with specific subpopulations. J Infect Dis 208(6):969\u2013977. doi: 10.1093\/infdis\/jit275","journal-title":"J Infect Dis"},{"issue":"4","key":"2935_CR12","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1097\/OLQ.0b013e3181fc6944","volume":"38","author":"J Twin","year":"2011","unstructured":"Twin J, Moore EE, Garland SM, Stevens MP, Fairley CK, Donovan B, Rawlinson W, Tabrizi SN (2011) Chlamydia trachomatis genotypes among men who have sex with men in Australia. Sex Transm Dis 38(4):279\u2013285. doi: 10.1097\/OLQ.0b013e3181fc6944","journal-title":"Sex Transm Dis"},{"issue":"12","key":"2935_CR13","doi-asserted-by":"publisher","first-page":"2587","DOI":"10.1017\/S0950268816000996","volume":"144","author":"FY Kong","year":"2016","unstructured":"Kong FY, Tabrizi SN, Fairley CK, Phillips S, Fehler G, Law M, Vodstrcil LA, Chen M, Bradshaw CS, Hocking JS (2016) Higher organism load associated with failure of azithromycin to treat rectal chlamydia. Epidemiol Infect 144(12):2587\u20132596. doi: 10.1017\/S0950268816000996","journal-title":"Epidemiol Infect"},{"issue":"4","key":"2935_CR14","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1038\/ng.2214","volume":"44","author":"SR Harris","year":"2012","unstructured":"Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morr\u00e9 SA, Speksnijder A, B\u00e9b\u00e9ar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR (2012) Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat Genet 44(4):413\u2013419, S1. doi: 10.1038\/ng.2214","journal-title":"Nat Genet"},{"issue":"3","key":"2935_CR15","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0034452","volume":"7","author":"K Gravningen","year":"2012","unstructured":"Gravningen K, Christerson L, Furberg AS, Simonsen GS, \u00d6dman K, St\u00e5hlsten A, Herrmann B (2012) Multilocus sequence typing of genital Chlamydia trachomatis in Norway reveals multiple new sequence types and a large genetic diversity. PLoS One 7(3), e34452. doi: 10.1371\/journal.pone.0034452","journal-title":"PLoS One"},{"issue":"5","key":"2935_CR16","doi-asserted-by":"publisher","first-page":"1410","DOI":"10.1128\/JCM.02301-06","volume":"45","author":"M Klint","year":"2007","unstructured":"Klint M, Fuxelius HH, Goldkuhl RR, Skarin H, Rutemark C, Andersson SG, Persson K, Herrmann B (2007) High-resolution genotyping of Chlamydia trachomatis strains by multilocus sequence analysis. J Clin Microbiol 45(5):1410\u20131414. doi: 10.1128\/JCM.02301-06","journal-title":"J Clin Microbiol"},{"issue":"6","key":"2935_CR17","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1136\/sextrans-2014-051790","volume":"91","author":"B Versteeg","year":"2015","unstructured":"Versteeg B, Himschoot M, van den Broek IV, Bom RJ, Speksnijder AG, Schim van der Loeff MF, Bruisten SM (2015) Urogenital Chlamydia trachomatis strain types, defined by high-resolution multilocus sequence typing, in relation to ethnicity and urogenital symptoms among a young screening population in Amsterdam, The Netherlands. Sex Transm Infect 91(6):415\u2013422. doi: 10.1136\/sextrans-2014-051790","journal-title":"Sex Transm Infect"},{"key":"2935_CR18","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1016\/j.mimet.2016.06.005","volume":"127","author":"J Isaksson","year":"2016","unstructured":"Isaksson J, Gallo Vaulet L, Christerson L, Ruettger A, Sachse K, Entrocassi C, Castro \u00c9, Rodr\u00edguez Fermepin M, Herrmann B (2016) Comparison of multilocus sequence typing and multilocus typing microarray of Chlamydia trachomatis strains from Argentina and Chile. J Microbiol Methods 127:214\u2013218. doi: 10.1016\/j.mimet.2016.06.005","journal-title":"J Microbiol Methods"},{"key":"2935_CR19","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1186\/1471-2334-14-223","volume":"14","author":"KS Smith","year":"2014","unstructured":"Smith KS, Hocking JS, Chen M, Fairley CK, McNulty A, Read P, Bradshaw CS, Tabrizi SN, Wand H, Saville M, Rawlinson W, Garland SM, Donovan B, Kaldor JM, Guy R (2014) Rationale and design of REACT: a randomised controlled trial assessing the effectiveness of home-collection to increase chlamydia retesting and detect repeat positive tests. BMC Infect Dis 14:223. doi: 10.1186\/1471-2334-14-223","journal-title":"BMC Infect Dis"},{"issue":"12","key":"2935_CR20","doi-asserted-by":"publisher","first-page":"2725","DOI":"10.1093\/molbev\/mst197","volume":"30","author":"K Tamura","year":"2013","unstructured":"Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725\u20132729. doi: 10.1093\/molbev\/mst197","journal-title":"Mol Biol Evol"},{"issue":"7","key":"2935_CR21","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870\u20131874. doi: 10.1093\/molbev\/msw054","journal-title":"Mol Biol Evol"},{"issue":"3","key":"2935_CR22","first-page":"512","volume":"10","author":"K Tamura","year":"1993","unstructured":"Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10(3):512\u2013526","journal-title":"Mol Biol Evol"},{"issue":"11","key":"2935_CR23","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0077977","volume":"8","author":"RJ Bom","year":"2013","unstructured":"Bom RJ, van der Helm JJ, Bruisten SM, Gr\u00fcnberg AW, Sabajo LO, Schim van der Loeff MF, de Vries HJ (2013) The role of Surinamese migrants in the transmission of Chlamydia trachomatis between Paramaribo, Suriname and Amsterdam, The Netherlands. PLoS One 8(11), e77977. doi: 10.1371\/journal.pone.0077977","journal-title":"PLoS One"},{"issue":"3","key":"2935_CR24","first-page":"157","volume":"34","author":"L Newman","year":"2010","unstructured":"NNDSS Annual Report Writing Group, Newman L, Stirzaker S, Knuckey D, Robinson K, Hood J, Knope K, Fitzsimmons G, Barker S, Martin N, Siripol S, Gajanayake I, Kaczmarek M, Barr I, Hii A, Foxwell R, Owen R, Liu C, Wright P, Sanders L, Barry C, Ormond J (2010) Australia\u2019s notifiable disease status, 2008: annual report of the National Notifiable Diseases Surveillance System. Commun Dis Intell Q Rep 34(3):157\u2013224","journal-title":"Commun Dis Intell Q Rep"}],"container-title":["European Journal of Clinical Microbiology & Infectious Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10096-017-2935-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-017-2935-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-017-2935-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,10,2]],"date-time":"2020-10-02T18:46:49Z","timestamp":1601664409000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10096-017-2935-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,2,20]]},"references-count":24,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2017,7]]}},"alternative-id":["2935"],"URL":"https:\/\/doi.org\/10.1007\/s10096-017-2935-6","relation":{},"ISSN":["0934-9723","1435-4373"],"issn-type":[{"type":"print","value":"0934-9723"},{"type":"electronic","value":"1435-4373"}],"subject":[],"published":{"date-parts":[[2017,2,20]]}}}