{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T20:16:20Z","timestamp":1793304980763,"version":"4.5.0"},"reference-count":348,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T00:00:00Z","timestamp":1782950400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T00:00:00Z","timestamp":1782950400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Eur J Clin Microbiol Infect Dis"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1007\/s10096-026-05577-3","type":"journal-article","created":{"date-parts":[[2026,7,1]],"date-time":"2026-07-01T23:14:33Z","timestamp":1782947673000},"page":"2939-2987","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["A review of bloodstream infections\u2212pathogens, pathogenesis, diagnostic strategies, treatment methods\u2212challenges and future aspects"],"prefix":"10.1007","volume":"45","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-7230-0841","authenticated-orcid":false,"given":"Amit","family":"Kumar","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adesh","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashu","family":"Tyagi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Raj","family":"Singh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Myank Uday","family":"Charaya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,2]]},"reference":[{"key":"5577_CR1","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2025.1492208","author":"J Chen","year":"2025","unstructured":"Chen J, Huang H, Zhang R, Fu Y, Jing C (2025) Risk factors associated with mortality and pathogen characteristics of bloodstream infection-induced severe sepsis in the pediatric intensive care unit: a retrospective cohort study. Front Cell Infect Microbiol 15:1492208. https:\/\/doi.org\/10.3389\/fcimb.2025.1492208","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR2","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-021-00997-6","author":"F Schoneweck","year":"2021","unstructured":"Schoneweck F, Schmitz RPH, Ri\u00dfner F, Scherag A, L\u00f6ffler B, Pletz MW, Weis S, Brunkhorst FM, Hagel S (2021) The epidemiology of bloodstream infections and antimicrobial susceptibility patterns in Thuringia, Germany: a five-year prospective, state-wide surveillance study (AlertsNet). Antimicrob Resist Infect Control 10:132. https:\/\/doi.org\/10.1186\/s13756-021-00997-6","journal-title":"Antimicrob Resist Infect Control"},{"key":"5577_CR3","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-024-01105-2","author":"CL Holmes","year":"2025","unstructured":"Holmes CL, Albin OR, Mobley HLT, Bachman MA (2025) Bloodstream infections: mechanisms of pathogenesis and opportunities for intervention. Nat Rev Microbiol 23:210\u2013224. https:\/\/doi.org\/10.1038\/s41579-024-01105-2","journal-title":"Nat Rev Microbiol"},{"key":"5577_CR4","unstructured":"Tortora GJ, Funke BR, Case CL (2019) Microbiology: An introduction, 13th ed. Pearson, Chicago"},{"issue":"4","key":"5577_CR5","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2024.106236","volume":"89","author":"AS Danielsen","year":"2024","unstructured":"Danielsen AS, Gu Q, Fostervold A, Eyre DW, Bj\u00f8rnholt JV (2024) \u2018Bloodstream infection\u2019: a valuable concept we should keep in our toolbox. J Infect 89(4):106236. https:\/\/doi.org\/10.1016\/j.jinf.2024.106236","journal-title":"J Infect"},{"key":"5577_CR6","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11367-7","author":"J Li","year":"2025","unstructured":"Li J, Zheng Y, Ma J, Zhang Y, Dong H, Chen L, Lu S, Lu S (2025) The relationship between catheter-related bloodstream infection and multi-drug resistant bacteria: a five-year retrospective study. BMC Infect Dis 25(1):988. https:\/\/doi.org\/10.1186\/s12879-025-11367-7","journal-title":"BMC Infect Dis"},{"key":"5577_CR7","doi-asserted-by":"publisher","DOI":"10.1016\/S2214-109X(25)00221-9","author":"R Parveen","year":"2025","unstructured":"Parveen R, Thakur AK, Srivastav S, Puraswani M, Srivastava AK, Chakrabarti A, Rodrigues C, Ray P, Biswal M, Taneja N, Wattal C et al (2025) Profile of central line-associated bloodstream infections in adult, paediatric, and neonatal intensive care units of hospitals participating in a health-care-associated infection surveillance network in India: a 7-year multicentric study. Lancet Glob Health 13(9):e1564-e1573. https:\/\/doi.org\/10.1016\/S2214-109X(25)00221-9","journal-title":"Lancet Glob Health"},{"key":"5577_CR8","doi-asserted-by":"publisher","DOI":"10.1016\/j.ejim.2023.04.018","author":"S Benenson","year":"2023","unstructured":"Benenson S, Ben-Yosef Y, Schwartz C, Cohen MJ, Oster Y (2023) Sources of primary bloodstream infections in internal medicine patients \u2013 a cohort study. Eur J Intern Med 13:69-74. https:\/\/doi.org\/10.1016\/j.ejim.2023.04.018","journal-title":"Eur J Intern Med"},{"key":"5577_CR9","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens13080677","author":"I Chandroulis","year":"2024","unstructured":"Chandroulis I, Schinas G, de Lastic AL, Polyzou E, Tsoupra S, Davoulos C, Kolosaka M, Niarou V, Theodoraki S, Ziazias D, Kosmopoulou F, Koutsouri CP, Gogos C, Akinosoglou K (2024) Patterns, outcomes and economic burden of primary vs. secondary bloodstream infections: A single center, cross-sectional study. Pathogens 13(8):677. https:\/\/doi.org\/10.3390\/pathogens13080677","journal-title":"Pathogens"},{"key":"5577_CR10","doi-asserted-by":"publisher","DOI":"10.1007\/s00134-025-08026-5","author":"A Tabah","year":"2025","unstructured":"Tabah A, De Waele J, Ssi Yan Kai N, Aslan AT, Buetti N, Timsit JF, Ballard E, Eriksson L, Laupland KB, Lipman J (2025) Source control in bloodstream infections in patients with sepsis, septic shock, or requiring ICU admission: a scoping review with recommendations for standardizing research. Intensive Care Med 51(8):1462-1475. https:\/\/doi.org\/10.1007\/s00134-025-08026-5","journal-title":"Intensive Care Med"},{"key":"5577_CR11","doi-asserted-by":"publisher","DOI":"10.1155\/bmri\/7745297","author":"AA Alemu","year":"2023","unstructured":"Alemu AA, Adane A, Altaye KD, Mamo AG, Tsigie HA, Mulu M, Ergena AE, Agonafir DB, Sema FD, Jara AG (2023) Bloodstream infection and associated factors at University of Gondar comprehensive specialized hospital, Northwest Ethiopia, 2023: a prospective cross-sectional study. BioMed Res Int 2025:7745297. https:\/\/doi.org\/10.1155\/bmri\/7745297","journal-title":"BioMed Res Int"},{"key":"5577_CR12","doi-asserted-by":"publisher","DOI":"10.1038\/nrdp.2015.35","author":"SG Deeks","year":"2015","unstructured":"Deeks SG, Overbaugh J, Phillips A, Buchbinder S (2015) HIV infection. Nat Rev Dis Primers.1, 15035. https:\/\/doi.org\/10.1038\/nrdp.2015.35","journal-title":"Nat Rev Dis Primers"},{"key":"5577_CR13","unstructured":"Patel R (2020) The clinician and the microbiology laboratory: test ordering, specimen collection, and result interpretation. In: Bennett JE, Dolin R, Blaser MJ (eds) Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases, 9th edn. Elsevier, Philadelphia, pp 211\u2013230e1"},{"key":"5577_CR14","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2020.05.004","author":"A Kumar","year":"2020","unstructured":"Kumar A, Russel RM, Pifer R, Menezes-Garcia Z, Cuesta S, Narayana S, MacMillan JB, Sperandio V (2020) The serotonin neurotransmitter modulates virulence of enteric pathogens. Cell Host Microbe 28(1):41-53.e8. https:\/\/doi.org\/10.1016\/j.chom.2020.05.004","journal-title":"Cell Host Microbe"},{"key":"5577_CR15","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(19)32989-7","author":"KE Rudd","year":"2017","unstructured":"Rudd KE, Johnson SC, Agesa KM, Shackelford KA, Tsoi D, Kievlan DR, Colombara DV, Ikuta KS, et al (2020) Global, regional, and national sepsis incidence and mortality, 1990\u20132017: analysis for the Global Burden of Disease Study. Lancet 395:200\u2013211. https:\/\/doi.org\/10.1016\/S0140-6736(19)32989-7","journal-title":"Lancet"},{"key":"5577_CR16","unstructured":"Taylor TA, Tobin EH, Unakal CG (2026) Staphylococcus aureus infection. Updated December 1, 2025. In: StatPearls [Internet]. StatPearls Publishing, Treasure Island (FL). https:\/\/www.ncbi.nlm.nih.gov\/books\/NBK441868\/"},{"key":"5577_CR17","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0273414","author":"P Soedarmono","year":"2022","unstructured":"Soedarmono P, Diana A, Tauran P, Lokida D, Aman AT, Alisjahbana B, Arlinda D, Tjitra E, Kosasih H, Merati KTP, Arif M, Gasem MH, Susanto NH, Lukman N, Sugiyono RI, Hadi U, Lisdawati V, Tchos KGF, Neal A, Karyana M (2022) The characteristics of bacteremia among patients with acute febrile illness requiring hospitalization in Indonesia. PLoS One 8;17(9):e0273414. https:\/\/doi.org\/10.1371\/journal.pone.0273414","journal-title":"PLoS One"},{"key":"5577_CR18","doi-asserted-by":"publisher","DOI":"10.1186\/s12985-023-02006-3","author":"Y Zhou","year":"2023","unstructured":"Wu F, Simonetti FR (2023) Learning from persistent viremia: mechanisms and implications for clinical care and HIV-1 cure. Curr HIV\/AIDS Rep 20:428\u2013439. https:\/\/doi.org\/10.1007\/s11904-023-00674-w https:\/\/doi.org\/10.1186\/s12985-023-02006-3","journal-title":"Virol J"},{"key":"5577_CR19","doi-asserted-by":"publisher","DOI":"10.1016\/j.imj.2024.100088","author":"R Sagar","year":"2024","unstructured":"Sagar R, Raghavendhar S, Jain V, Khan N, Chandele A, Patel AK, Kaja M, Ray P, Kapoor N (2024) Viremia and clinical manifestations in acute febrile patients of Chikungunya infection during the 2016 CHIKV outbreak in Delhi, India. Infect Med (Beijing) 3(1):100088. https:\/\/doi.org\/10.1016\/j.imj.2024.100088","journal-title":"Infect Med (Beijing)"},{"key":"5577_CR20","doi-asserted-by":"publisher","DOI":"10.1002\/rmv.2121","author":"TH Nguyen","year":"2023","unstructured":"Morsy S, Hashan MR, Hieu TH, Mohammed AT, Elawady SS, Ghosh P, Elgendy MA, Le HH, Hamad WMA, Iqtadar S, Dumre SP, Hirayama K, Huy NT (2020) The association between dengue viremia kinetics and dengue severity: a systematic review and meta-analysis. Rev Med Virol 30:e2121. https:\/\/doi.org\/10.1002\/rmv.2121","journal-title":"Lancet Infect Dis"},{"key":"5577_CR21","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-19057-5","author":"J Fajnzylber","year":"2020","unstructured":"Fajnzylber J, Regan J, Coxen K, Corry H, Wong C et al (2020) SARS-CoV-2 viral load is associated with increased disease severity and mortality. Nat Commun 11(1):5493. https:\/\/doi.org\/10.1038\/s41467-020-19057-5","journal-title":"Nat Commun"},{"key":"5577_CR22","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jit116","author":"NJ White","year":"2013","unstructured":"White NJ, Turner GDH, Day NPJ, Dondorp AM (2013) Lethal malaria: Marchiafava and Bignami were right. J Infect Dis 208(2):192-198. https:\/\/doi.org\/10.1093\/infdis\/jit116","journal-title":"J Infect Dis"},{"key":"5577_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(21)00055-0","author":"FG Tadesse","year":"2023","unstructured":"Whittaker C, Slater H, Nash R, Bousema T, Drakeley C, Ghani AC, Okell LC (2021) Global patterns of submicroscopic Plasmodium falciparum malaria infection: insights from a systematic review and meta-analysis of population surveys. Lancet Microbe 2:e366\u2013e374. https:\/\/doi.org\/10.1016\/S2666-5247(21)00055-0","journal-title":"Nat Commun"},{"key":"5577_CR24","doi-asserted-by":"publisher","DOI":"10.1038\/415673a","author":"LH Miller","year":"2002","unstructured":"Miller LH, Baruch DI, Marsh K, Doumbo OK (2002) The pathogenic basis of malaria. Nature 415: 673\u2013679. https:\/\/doi.org\/10.1038\/415673a","journal-title":"Nature"},{"key":"5577_CR25","doi-asserted-by":"publisher","DOI":"10.1186\/cc2183","author":"A Trampuz","year":"2003","unstructured":"Trampuz A, Jereb M, Muzlovic I, Prabhu RM (2003) Clinical review: severe malaria. Crit Care 7(4):315-323. https:\/\/doi.org\/10.1186\/cc2183","journal-title":"Crit Care"},{"key":"5577_CR26","doi-asserted-by":"publisher","DOI":"10.1186\/s12936-026-05817-z","author":"MJ Dantur-Juri","year":"2026","unstructured":"Dantur-Juri MJ, Coello-Peralta RD, Calle-Atariguana DE, Arevalo-Bozada MM, Duque PL, Gonz\u00e1lez-Pi\u00f1eres N, Rougeron V, Degrugillier F, Dentice-Maidana S, Liria-Salazar J, Zaidenberg MO (2026) Asymptomatic and submicroscopic Plasmodium vivax infection: a study previous to malaria-free certification in Argentina. Malar J 25(1):146. https:\/\/doi.org\/10.1186\/s12936-026-05817-z","journal-title":"Malar J"},{"key":"5577_CR27","doi-asserted-by":"publisher","DOI":"10.7759\/cureus.102880","author":"T Valido","year":"2026","unstructured":"Valido T, Goncalves A, Sanches M, Costa Silva T, Pereira C (2026) Severe malaria due to Plasmodium vivax with pulmonary involvement: a case report. Cureus 18(2):e102880. https:\/\/doi.org\/10.7759\/cureus.102880","journal-title":"Cureus"},{"key":"5577_CR28","doi-asserted-by":"publisher","DOI":"10.1186\/1475-2875-11-135","author":"NM Douglas","year":"2012","unstructured":"Douglas NM, Anstey NM, Buffet PA, Poespoprodjo JR, Yeo TW, White NJ, Price RN (2012) The anaemia of Plasmodium vivax malaria. Malar J 11:135. https:\/\/doi.org\/10.1186\/1475-2875-11-135","journal-title":"Malar J"},{"key":"5577_CR29","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(23)01249-7","author":"NJ White","year":"2014","unstructured":"Poespoprodjo JR, Douglas NM, Ansong D, Kho S, Anstey NM (2023) Malaria. Lancet 402(10419):2328\u20132345. https:\/\/doi.org\/10.1016\/S0140-6736(23)01249-7","journal-title":"Lancet"},{"key":"5577_CR30","doi-asserted-by":"publisher","DOI":"10.1016\/S1474-4422(05)70247-7","author":"R Idro","year":"2005","unstructured":"Idro R, Jenkins NE, Newton CR (2005) Pathogenesis, clinical features, and neurological outcome of cerebral malaria. Lancet Neurol 4(12):827-840. https:\/\/doi.org\/10.1016\/S1474-4422(05)70247-7","journal-title":"Lancet Neurol"},{"key":"5577_CR31","doi-asserted-by":"publisher","DOI":"10.3390\/epidemiologia6040076","author":"PJ Krause","year":"2022","unstructured":"Jajosky RP, Li W, Jajosky AN, Jajosky PG, Stowell SR (2025) Babesiosis and malaria in the United States: epidemiology, research funding, medical progress, and recommendations for improvement. Epidemiologia (Basel) 6:76. https:\/\/doi.org\/10.3390\/epidemiologia6040076","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR32","doi-asserted-by":"publisher","DOI":"10.18502\/cmm.8.3.11207","author":"M Kord","year":"2022","unstructured":"Kord M, Salehi M, Hashemi SJ, Abdollahi A, Alijani N, Maleki A, Mahmoudi S, Ahmadikia K, Parsameher N, Moradi M, Abdorahimi M, Rezaie S, Hashemi Fesharaki SS, Abbasi K, Alcazar-Fuoli L, Khodavaisy S (2022) Clinical, epidemiological, and mycological features of patients with candidemia: experience in two tertiary referral centers in Iran. Curr Med Mycol 8(3):9-17. https:\/\/doi.org\/10.18502\/cmm.8.3.11207","journal-title":"Curr Med Mycol"},{"key":"5577_CR33","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms13030652","author":"A Bhargava","year":"2025","unstructured":"Bhargava A, Klamer K, Sharma M, Ortiz D, Saravolatz L (2025) Candida auris: a continuing threat. Microorganisms 13(3):652. https:\/\/doi.org\/10.3390\/microorganisms13030652","journal-title":"Microorganisms"},{"key":"5577_CR34","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(23)00692-8","author":"DW Denning","year":"2024","unstructured":"Denning DW (2024) Global incidence and mortality of severe fungal disease. Lancet Infect Dis.24(7):e428-e438. https:\/\/doi.org\/10.1016\/S1473-3099(23)00692-8","journal-title":"Lancet Infect Dis"},{"key":"5577_CR35","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2024.107769","author":"AL Rodrigues","year":"2024","unstructured":"Zha L, Li S, Guo J, Hu Y, Pan L, Wang H, Zhou Y, Xu Q, Lu Z, Kong X, Tong X, Cheng Y (2025) Global and regional burden of bloodstream infections caused by carbapenem-resistant Gram-negative bacteria in 2019: a systematic analysis from the MICROBE database. Int J Infect Dis 153:107769. https:\/\/doi.org\/10.1016\/j.ijid.2024.107769","journal-title":"Int J Infect Dis"},{"key":"5577_CR36","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(21)02724-0","author":"CJ Murray","year":"2019","unstructured":"Murray CJ, Ikuta KS, Sharara F, Swetschinski L, Robles Aguilar G et al (2019) Global Burden of Bacterial Antimicrobial Resistance in 2019: a systematic analysis. Lancet 400(10358):1102. https:\/\/doi.org\/10.1016\/S0140-6736(21)02724-0","journal-title":"Lancet"},{"key":"5577_CR37","doi-asserted-by":"publisher","DOI":"10.1080\/14787210.2019.1555470","author":"MJ Evans","year":"2024","unstructured":"Marr CM, Russo TA (2019) Hypervirulent Klebsiella pneumoniae: a new public health threat. Expert Rev Anti Infect Ther 17:71\u201373. https:\/\/doi.org\/10.1080\/14787210.2019.1555470","journal-title":"Lancet Microbe"},{"key":"5577_CR38","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(22)02185-7","author":"KS Ikuta","year":"2022","unstructured":"Ikuta KS, Swetschinski LR, Robles Aguilar G, Sharara F, Mestrovic T, Gray AP, Weaver ND, Wool EE, Han C, Gershberg Hayoon A, Aali A, Abate SM, Abbasi-Kangevari M, Abbasi-Kangevari Z et al (2022) Global mortality associated with 33 bacterial pathogens in 2019: A systematic analysis for the Global Burden of Disease Study 2019. Lancet 400(10358):1102. https:\/\/doi.org\/10.1016\/S0140-6736(22)02185-7","journal-title":"Lancet"},{"key":"5577_CR39","doi-asserted-by":"publisher","DOI":"10.1016\/j.isci.2026.114911","author":"BB Larsen","year":"2024","unstructured":"Uzzell C, Shelton J, van Rhijn N (2026) Climate change-driven geographical shifts in Aspergillus species and the implications for plant and human health. iScience 29:114911. https:\/\/doi.org\/10.1016\/j.isci.2026.114911","journal-title":"Nat Clim Change"},{"key":"5577_CR40","doi-asserted-by":"publisher","DOI":"10.1136\/bmjopen-2024-086505","author":"A Kadam","year":"2024","unstructured":"Kadam A, Mamulwar M, Bhambure G, Bembalkar S, Bapat S et al (2024) Incremental cost of treating antimicrobial-resistant infections among hospitalised patients in India: a cohort study. BMJ Open 14(12):e086505. https:\/\/doi.org\/10.1136\/bmjopen-2024-086505","journal-title":"BMJ Open"},{"key":"5577_CR41","doi-asserted-by":"crossref","unstructured":"Hope B (1998) The greatest benefit to mankind: A medical history of humanity from antiquity to the present. Harper Collins, New York, 316(7132):713. pp 831.","DOI":"10.1136\/bmj.316.7132.713a"},{"key":"5577_CR42","doi-asserted-by":"crossref","unstructured":"Dobell C (1932) Antony van Leeuwenhoek and his little animals: Being some account of the father of protozoology and bacteriology and his multifarious discoveries in these disciplines. Harcourt. Brace Co. New York, pp. 388\u2013422. https:\/\/archive.org\/details\/antonyvanleeuwen00dobe","DOI":"10.5962\/bhl.title.13354"},{"key":"5577_CR43","unstructured":"Geison GL (1995) The private science of Louis Pasteur. Princeton University Press, Princeton, NJ, pp. 45\u201352. https:\/\/www.jstor.org\/stable\/j.ctt7zv2b1"},{"key":"5577_CR44","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.15.4.595-612.2002","author":"FEG Cox","year":"2003","unstructured":"Cox FEG (2003) History of human parasitology. Clin Microbiol Rev 15(4):595-612. https:\/\/doi.org\/10.1128\/CMR.15.4.595-612.2002","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR45","unstructured":"Semmelweis I (1912) Die \u00c4tiologie, der Begriff und die Prophylaxis des Kindbettfiebers (1861)[The etiology, concept, and prophylaxis of childbed fever]. Johann Ambrosius Barth, Leipzig, pp. 1\u2013607. https:\/\/archive.org\/details\/b24919031"},{"key":"5577_CR46","doi-asserted-by":"publisher","DOI":"10.1126\/science.325649","author":"BS Blumberg","year":"1977","unstructured":"Blumberg BS (1977) Australia antigen and the biology of hepatitis B. Science 197(4298):17-25. https:\/\/doi.org\/10.1126\/science.325649","journal-title":"Science"},{"key":"5577_CR47","doi-asserted-by":"publisher","DOI":"10.7326\/0003-4819-66-5-924","author":"BS Blumberg","year":"1967","unstructured":"Blumberg BS, Gerstley BJS, Hungerford DA, London WT, Sutnick AI (1967) A serum antigen (Australia antigen) in Down\u2019s syndrome, leukemia, and hepatitis. Ann Intern Med 66(5):924-931. https:\/\/doi.org\/10.7326\/0003-4819-66-5-924","journal-title":"Ann Intern Med"},{"key":"5577_CR48","doi-asserted-by":"publisher","DOI":"10.1126\/science.2523562","author":"Q-L Choo","year":"1989","unstructured":"Choo Q-L, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M (1989) Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244(4902):359-362. https:\/\/doi.org\/10.1126\/science.2523562","journal-title":"Science"},{"key":"5577_CR49","doi-asserted-by":"publisher","DOI":"10.1016\/0168-1702(92)90066-i","author":"T Tanaka","year":"1992","unstructured":"Tanaka T, Kato N, Nakagawa M, Ootsuyama Y, Cho MJ, Nakazawa T, Hijikata M, Ishimura Y, Shimotohno K (1992) Molecular cloning of hepatitis C virus genome from a single Japanese carrier: sequence variation within the same individual and among infected individuals. Virus Res 23(1-2):39-53. https:\/\/doi.org\/10.1016\/0168-1702(92)90066-i","journal-title":"Virus Res"},{"key":"5577_CR50","doi-asserted-by":"publisher","DOI":"10.1126\/science.8493571","author":"RA Weiss","year":"1993","unstructured":"Weiss RA (1993) How does HIV cause AIDS? Science 260(5112):1273-1279. https:\/\/doi.org\/10.1126\/science.8493571","journal-title":"Science"},{"key":"5577_CR51","doi-asserted-by":"publisher","DOI":"10.1016\/j.lansea.2024.100412","author":"J Kaur","year":"2017","unstructured":"Kaur J, Singh H, Sethi T (2017) Emerging trends in antimicrobial resistance in bloodstream infections: multicentric longitudinal study in India (2017\u20132022). Lancet Reg Health Southeast Asia 26:100412. https:\/\/doi.org\/10.1016\/j.lansea.2024.100412","journal-title":"Lancet Reg Health Southeast Asia"},{"key":"5577_CR52","doi-asserted-by":"publisher","DOI":"10.1186\/cc11202","author":"O Liesenfeld","year":"2024","unstructured":"Afshari A, Schrenzel J, Ieven M, Harbarth S (2012) Bench-to-bedside review: rapid molecular diagnostics for bloodstream infection\u2014a new frontier? Crit Care 16:222. https:\/\/doi.org\/10.1186\/cc11202","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR53","doi-asserted-by":"publisher","DOI":"10.1016\/j.clinmicnews.2016.03.004","author":"R Patel","year":"2023","unstructured":"38:51\u201356. Rodrigues C, Desai N, Fernandes H (2016) Molecular diagnosis in resource-limited settings. Clin Microbiol Newsl 38:51\u201356. https:\/\/doi.org\/10.1016\/j.clinmicnews.2016.03.004","journal-title":"J Glob Health"},{"key":"5577_CR54","doi-asserted-by":"publisher","DOI":"10.1016\/j.jointm.2023.12.004","author":"F Ntziora","year":"2024","unstructured":"Ntziora F, Giannitsioti E, Papadimitriou-Olivgeris M, Bartzavali C, Zotou A, Nikolopoulou A, Kolonitsiou F, Lambropoulou A, Solomou A, Tsiata E, Anastassiou ED, Giamarellou H (2024) Bloodstream infections in the era of the COVID-19 pandemic: changing epidemiology of antimicrobial resistance in the intensive care unit. J Intensive Med 4(3):269-280. https:\/\/doi.org\/10.1016\/j.jointm.2023.12.004","journal-title":"J Intensive Med"},{"key":"5577_CR55","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2024.1403168","author":"S Sharma","year":"2024","unstructured":"Sharma S, Chauhan A, Ranjan A, Mathkor DM, Haque S, Ramniwas S, Tuli HS, Jindal T, Yadav V (2024) Emerging challenges in antimicrobial resistance: implications for pathogenic microorganisms, novel antibiotics, and their impact on sustainability. Front Microbiol 15:1403168. https:\/\/doi.org\/10.3389\/fmicb.2024.1403168","journal-title":"Front Microbiol"},{"key":"5577_CR56","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(24)00134-4","author":"S Bertagnolio","year":"2024","unstructured":"Bertagnolio S, Dobreva Z, Centner CM, Olaru ID, Don\u00e0 D, Burzo S, Huttner BD, Chaillon A, Gebreselassie N, Wi T, Hasso-Agopsowicz M, Allegranzi B, Sati H, Ivanovska V, Kothari KU, Balkhy HH, Cassini A, Hamers RL, Van Weezenbeek K (2024) WHO Research Agenda for AMR in Human Health Collaborators. WHO global research priorities for antimicrobial resistance in human health. Lancet Microbe 5:e1000\u2013e1012. https:\/\/doi.org\/10.1016\/S2666-5247(24)00134-4","journal-title":"Lancet Microbe"},{"key":"5577_CR57","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0007213","author":"SJ Ryan","year":"2019","unstructured":"Ryan SJ, Carlson CJ, Mordecai EA, Johnson LR (2019) Global expansion and redistribution of Aedes-borne virus transmission risk with climate change. PLoS Negl Trop Dis 13(3):e0007213. https:\/\/doi.org\/10.1371\/journal.pntd.0007213","journal-title":"PLoS Negl Trop Dis"},{"key":"5577_CR58","doi-asserted-by":"publisher","DOI":"10.1038\/nature06536","author":"KE Jones","year":"2008","unstructured":"Jones KE, Patel NG, Levy MA, Storeygard A, Balk D, Gittleman JL, Daszak P (2008) Global trends in emerging infectious diseases. Nature 451(7181):990-993. https:\/\/doi.org\/10.1038\/nature06536","journal-title":"Nature"},{"key":"5577_CR59","doi-asserted-by":"publisher","DOI":"10.3233\/NPM-221110","author":"GAP Kartikeswar","year":"2023","unstructured":"Kartikeswar GAP, Parikh TB, Randive B, Kinikar A, Rajput UC, Valvi C, Vaidya U, Malwade S, Agarkhedkar S, Kadam A, Smith RM, Westercamp M, Schumacher C, Mave V, Robinson ML, Gupta A, Milstone AM, Manabe YC, Johnson J (2023) Bloodstream infections in neonates with central venous catheters in three tertiary neonatal intensive care units in Pune, India. J Neonatal Perinatal Med 16(3):507-516. https:\/\/doi.org\/10.3233\/NPM-221110","journal-title":"J Neonatal Perinatal Med"},{"key":"5577_CR60","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2024.107290","author":"VD Rosenthal","year":"2024","unstructured":"Rosenthal VD, Memish ZA, Shweta FNU, Bearman G, Lutwick LI (2024) Preventing central line-associated bloodstream infections: a position paper of the International Society for Infectious Diseases, 2024 update. Int J Infect Dis 150:107290. https:\/\/doi.org\/10.1016\/j.ijid.2024.107290","journal-title":"Int J Infect Dis"},{"key":"5577_CR61","doi-asserted-by":"publisher","DOI":"10.3346\/jkms.2018.33.e92","author":"DP Misra","year":"2018","unstructured":"Misra DP, Agarwal V (2018) Systematic reviews: challenges for their justification, related comprehensive searches, and implications. J Korean Med Sci 33(12):e92. https:\/\/doi.org\/10.3346\/jkms.2018.33.e92","journal-title":"J Korean Med Sci"},{"key":"5577_CR62","doi-asserted-by":"publisher","DOI":"10.1002\/jrsm.1315","author":"C Cooper","year":"2018","unstructured":"Cooper C, Dawson S, Peters J et al (2018) Revisiting the need for a literature search narrative: a brief methodological note. Res Synth Methods 9(3):361-365. https:\/\/doi.org\/10.1002\/jrsm.1315","journal-title":"Res Synth Methods"},{"key":"5577_CR63","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11427-y","author":"B Sharew","year":"2025","unstructured":"Sharew B, Tilahun M (2025) Bacterial profile and antimicrobial resistance patterns among pediatrics patients with suspected bloodstream infections in Ethiopia: a systematic review and meta-analysis. BMC Infect Dis 25(1):1008. https:\/\/doi.org\/10.1186\/s12879-025-11427-y","journal-title":"BMC Infect Dis"},{"key":"5577_CR64","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11413-4","author":"B Khanal","year":"2025","unstructured":"Khanal B, Shrestha LB, Sharma A, Siwakoti S (2025) Bloodstream infections: trends in etiology and antimicrobial resistance in 10 years in Eastern Nepal. BMC Infect Dis 25: 1001. https:\/\/doi.org\/10.1186\/s12879-025-11413-4","journal-title":"BMC Infect Dis"},{"key":"5577_CR65","doi-asserted-by":"publisher","unstructured":"Thomas J, Petticrew M, Noyes J, Chandler J, Rehfuess E, Tugwell P, Welch VA (2019) Intervention complexity. In: Higgins JPT, Thomas J, Chandler J, Cumpston M, Li T, Page MJ, Welch VA (eds) Cochrane Handbook for Systematic Reviews of Interventions. John Wiley & Sons, Chichester, pp. 451\u2013477. https:\/\/doi.org\/10.1002\/9781119536604.ch17","DOI":"10.1002\/9781119536604.ch17"},{"key":"5577_CR66","unstructured":"World Health Organization (2023) Global antimicrobial resistance and use surveillance system (GLASS). https:\/\/www.who.int\/initiatives\/glass"},{"key":"5577_CR67","unstructured":"European Centre for Disease Prevention and Control (2023) European antimicrobial resistance surveillance network. https:\/\/www.ecdc.europa.eu\/en\/antimicrobial-resistance\/surveillance-and-disease-data"},{"key":"5577_CR68","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2026.108749","author":"RF Urrio","year":"2026","unstructured":"Urrio RF, Lyatuu GW, Festo C, Naburi H, Machang\u2019u D, Simba B, Siril H, Machumi L, Mganga A, Mauka W, Kibao A, Msangi M, Larsson EC, Biberfeld G, Kilewo C, K\u00e5gesten AE, Ekstr\u00f6m AM (2026) Three-year virological outcomes among adolescent girls and young women (AGYW) living with HIV enrolled in vertical transmission prevention services during pregnancy and postpartum in Tanzania: a prospective cohort study. Int J Infect Dis 168:108749. https:\/\/doi.org\/10.1016\/j.ijid.2026.108749","journal-title":"Int J Infect Dis"},{"key":"5577_CR69","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2025.108194","author":"J Song","year":"2023","unstructured":"Song J, Jeong S, Chun AY, Jung J, Park SJ, Park SM (2023) Incidence of respiratory infections after the COVID-19 pandemic (2023\u20132024) and its association of vaccination among entire populations in Korea. Int J Infect Dis 162:108194. https:\/\/doi.org\/10.1016\/j.ijid.2025.108194","journal-title":"Int J Infect Dis"},{"key":"5577_CR70","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2026.108742","author":"M Ezaki","year":"2026","unstructured":"Ezaki M, Nguyen TM, Kawasuji H, Nagaoka K, Takegoshi Y, Ikeda K, Kanatani J, Oishi K, Morinaga Y, Yamamoto Y (2026) Clindamycin demonstrates clinical effectiveness for bacteremic M1UK Streptococcus pyogenes pneumonia: a case report and in vitro evidence of notable antitoxin effects on M1UK. Int J Infect Dis 168:108742. https:\/\/doi.org\/10.1016\/j.ijid.2026.108742","journal-title":"Int J Infect Dis"},{"key":"5577_CR71","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciy378","author":"SS Kadri","year":"2018","unstructured":"Kadri SS, Adjemian J, Lai YL, Spaulding AB, Ricotta E, Prevots DR, Palmore TN, Rhee C, Klompas M, Dekker JP, Powers JH III, Suffredini AF, Hooper DC, Fridkin S, Danner RL (2018) Difficult-to-treat resistance in Gram-negative bacteremia at 173 US hospitals: retrospective cohort analysis of prevalence, predictors, and outcome of resistance to all first-line agents. Clin Infect Dis 67(12):1803-1814. https:\/\/doi.org\/10.1093\/cid\/ciy378","journal-title":"Clin Infect Dis"},{"key":"5577_CR72","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1198200","author":"S Gatica","year":"2023","unstructured":"Gatica S, Fuentes B, Rivera-Asin E, Ramirez-Cespedes P, Sep\u00falveda-Alfaro J, Catalan EA, Bueno SM, Kalergis AM, Simon F, Riedel CA, Melo-Gonzalez F (2023) Novel evidence on sepsis-inducing pathogens: from laboratory to bedside. Front Microbiol 14:1198200. https:\/\/doi.org\/10.3389\/fmicb.2023.1198200","journal-title":"Front Microbiol"},{"issue":"1","key":"5577_CR73","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00029-17","volume":"31","author":"A Jeffery-Smith","year":"2018","unstructured":"Jeffery-Smith A, Taori SK, Schelenz S, Jeffery K, Johnson EM, Borman A, Manuel R, Brown CS (2018) Candida auris: a review of the literature. Clin Microbiol Rev 31(1):e00029-17.31(1):e00029-17. https:\/\/doi.org\/10.1128\/CMR.00029-17","journal-title":"Clin Microbiol Rev"},{"issue":"3","key":"5577_CR74","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1080\/20477724.2023.2285187","volume":"118","author":"RHF Bashabsheh","year":"2024","unstructured":"Bashabsheh RHF, Al-Fawares O, Natsheh I, Bdeir R, Al-Khreshieh RO, Bashabsheh HHF (2024) Staphylococcus aureus epidemiology, pathophysiology, clinical manifestations and application of nano-therapeutics as a promising approach to combat methicillin resistant Staphylococcus aureus. Pathog Glob Health 118(3):209\u2013231.118(3):209-231. https:\/\/doi.org\/10.1080\/20477724.2023.2285187","journal-title":"Pathog Glob Health"},{"issue":"3","key":"5577_CR75","doi-asserted-by":"publisher","first-page":"603","DOI":"10.1128\/CMR.00134-14","volume":"28","author":"SYC Tong","year":"2015","unstructured":"Tong SYC, Davis JS, Eichenberger E, Holland TL, Fowler VG Jr (2015) Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management. Clin Microbiol Rev 28(3):603\u2013661. https:\/\/doi.org\/10.1128\/CMR.00134-14","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR76","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijregi.2026.100865","author":"B Kaya","year":"2026","unstructured":"Kaya B, Demir Tekol S, Bombac\u0131 E, Demirhan R (2026) Candida auris as an emerging threat in intensive care units: a single-center retrospective study. IJID Reg 19: 100865. https:\/\/doi.org\/10.1016\/j.ijregi.2026.100865","journal-title":"IJID Reg Health"},{"key":"5577_CR77","doi-asserted-by":"publisher","DOI":"10.1080\/23744235.2023.2261538","author":"N Handal","year":"2024","unstructured":"Handal N, Whitworth J, Lyngbakken MN, Berdal JE, Dalgard O, Bakken J\u00f8rgensen S (2024) Mortality and length of hospital stay after bloodstream infections caused by ESBL-producing compared to non-ESBL-producing Escherichia coli. Infect Dis (Auckl) 56(1):19-31 https:\/\/doi.org\/10.1080\/23744235.2023.2261538","journal-title":"Infect Dis (Auckl)"},{"key":"5577_CR78","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-024-03714-6","author":"X Yu","year":"2024","unstructured":"Yu X, Zhao Y, Sun X, Luan J, Wang H, Sun T, Lin T, Zhou X, Yang W, Deng Z, Liu B, Cao H (2024) Association between clinical-biological characteristics of Klebsiella pneumoniae and 28-day mortality in patients with bloodstream infection. BMC Microbiol 24(1):552. https:\/\/doi.org\/10.1186\/s12866-024-03714-6","journal-title":"BMC Microbiol"},{"key":"5577_CR79","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2025.107630","author":"B Pilmis","year":"2025","unstructured":"Pilmis B, Dortet L (2025) Epidemiology, treatment and outcomes of bloodstream infections due to MBL-producing Enterobacterales in France: a retrospective study. Int J Antimicrob Agents 66(6):107630. https:\/\/doi.org\/10.1016\/j.ijantimicag.2025.107630","journal-title":"Int J Antimicrob Agents"},{"key":"5577_CR80","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00837-21","author":"JT Smith","year":"2021","unstructured":"Jin Y, Zhou W, Zhan Q, Zheng B, Chen Y, Luo Q, Shen P, Xiao Y (2021) Genomic epidemiology and characterization of methicillin-resistant Staphylococcus aureus from bloodstream infections in China. mSystems 6:e00837-21. https:\/\/doi.org\/10.1128\/mSystems.00837-21 https:\/\/doi.org\/10.1128\/mSystems.00837-21","journal-title":"BMC Infect Dis"},{"key":"5577_CR81","doi-asserted-by":"publisher","DOI":"10.1007\/s00203-026-04839-0","author":"S Sawant","year":"2026","unstructured":"Sawant S, Shaikh S, Baldwin TC, Karakoula A, Rahman A (2026) Pseudomonas aeruginosa: associated pathogenesis, epidemiology, resistance mechanisms, host response and emerging treatment strategies. Arch Microbiol 208(7):351. https:\/\/doi.org\/10.1007\/s00203-026-04839-0","journal-title":"Arch Microbiol"},{"key":"5577_CR82","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2026.116951","author":"CA Colque","year":"2026","unstructured":"Colque CA, Lolle S, La Rosa R, Bendixen MP, Rudjord-Levann AM, Bica Sim\u00f5es F, Aan\u00e6s K, Molin S, Johansen HK (2026) Cell-type-independent infection dynamics of clinical Pseudomonas aeruginosa isolates in human airway epithelial models. Cell Rep 45(2):116951. https:\/\/doi.org\/10.1016\/j.celrep.2026.116951","journal-title":"Cell Rep"},{"key":"5577_CR83","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2025.1568615","author":"X Wang","year":"2025","unstructured":"Wang X, Liu Y, Ding Y, Li M, Gao Y, Li T (2025) Disease spectrum of patients with hospital-acquired multidrug-resistant organism infections in the intensive care unit: a retrospective study. Front Microbiol 16:1568615. https:\/\/doi.org\/10.3389\/fmicb.2025.1568615","journal-title":"Front Microbiol"},{"key":"5577_CR84","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2026.1784001","author":"D Puttegowda","year":"2026","unstructured":"Puttegowda D, Jayaram L, Rajshekar D, Abhinandithe KS, Pulipati S, Przyby\u0142ek M, Srinivasa C, Ramu R, Shahid M (2026) Prevalence and antimicrobial resistance of Acinetobacter baumannii isolated from endotracheal aspirates in a tertiary-care intensive care unit from South India. Front Microbiol 17:1784001. https:\/\/doi.org\/10.3389\/fmicb.2026.1784001","journal-title":"Front Microbiol"},{"key":"5577_CR85","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S573082","author":"H Yu","year":"2026","unstructured":"Yu H, Xiong P, Zhang H, Lu Z, Chen X, Yan R, Wang L (2026) Genomic characterization of antibiotic-resistant Enterococcus spp. strains in clinical settings of Yichang, China. Infect Drug Resist 19:573082. https:\/\/doi.org\/10.2147\/IDR.S573082","journal-title":"Infect Drug Resist"},{"key":"5577_CR86","doi-asserted-by":"publisher","DOI":"10.7759\/cureus.79628","author":"S Hota","year":"2025","unstructured":"Hota S, Patil SR, Mane PM (2025) Enterococcus: understanding their resistance mechanisms, therapeutic challenges, and emerging threats. Cureus 17(2):e79628. https:\/\/doi.org\/10.7759\/cureus.79628","journal-title":"Cureus"},{"key":"5577_CR87","doi-asserted-by":"publisher","DOI":"10.1080\/23744235.2020.1774074","author":"M Bright","year":"2020","unstructured":"Bright M, Parfitt EC, Pasquill K, Steele L, Laupland KB (2020) Occurrence and determinants of enterococcal bloodstream infections: a population-based study. Infect Dis 52(9):638-643. https:\/\/doi.org\/10.1080\/23744235.2020.1774074","journal-title":"Infect Dis"},{"key":"5577_CR88","doi-asserted-by":"publisher","DOI":"10.1016\/j.amsu.2022.104258","author":"GA Ali","year":"2022","unstructured":"Ali GA, Goravey W, Najim MS, Shunnar KM, Ibrahim SI, Daghfal J, Ibrahim EB, Al Maslamani M, Omrani AS, Hadi HA (2022) Epidemiology, microbiological and clinical characteristics of Enterococcus species bloodstream infections: a 10-year retrospective cohort study from Qatar. Annals Med Surg 80:104258. https:\/\/doi.org\/10.1016\/j.amsu.2022.104258","journal-title":"Annals Med Surg"},{"key":"5577_CR89","doi-asserted-by":"publisher","DOI":"10.1186\/s12889-026-26753-2","author":"Y Liang","year":"2026","unstructured":"Liang Y, Sun Z, Hua W, Yuan HY, Ruan W, Li D, Yuan Z (2026) Modeling the dynamics of seasonal influenza in response to meteorological conditions and antigenic variation: A simulation study. BMC Public Health 26: 1102. https:\/\/doi.org\/10.1186\/s12889-026-26753-2","journal-title":"BMC Public Health"},{"issue":"10353","key":"5577_CR90","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1016\/S0140-6736(22)00982-5","volume":"400","author":"TM Uyeki","year":"2022","unstructured":"Uyeki TM, Hui DS, Zambon M, Wentworth DE, Monto AS (2022) Influenza. Lancet 400(10353):693\u2013706. https:\/\/doi.org\/10.1016\/S0140-6736(22)00982-5","journal-title":"Lancet"},{"key":"5577_CR91","doi-asserted-by":"publisher","DOI":"10.3390\/tropicalmed10060152","author":"Q Qian","year":"2025","unstructured":"Qian Q, Fan G, Yang W, Shen C, Yang Y, Liu Y, Xiao W (2025) Advances in diagnostic techniques for influenza virus infection: A comprehensive review. Trop Med Infect Disease 10(6):152. https:\/\/doi.org\/10.3390\/tropicalmed10060152","journal-title":"Trop Med Infect Disease"},{"key":"5577_CR92","doi-asserted-by":"publisher","DOI":"10.1016\/j.jointm.2023.09.006","author":"F Valenzuela-S\u00e1nchez","year":"2024","unstructured":"Valenzuela-S\u00e1nchez F, Valenzuela-M\u00e9ndez B, Rodr\u00edguez-Guti\u00e9rrez JF, Estella \u00c1 (2024) Latest developments in early diagnosis and specific treatment of severe influenza infection. J Intensive Med 4(2):160-174. https:\/\/doi.org\/10.1016\/j.jointm.2023.09.006","journal-title":"J Intensive Med"},{"key":"5577_CR93","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(11)70318-8","author":"AC Hurt","year":"2012","unstructured":"Hurt AC, Chotpitayasunondh T, Cox NJ et al (2012) Antiviral resistance during the 2009 influenza A H1N1 pandemic: Public health, laboratory, and clinical perspectives. Lancet Infect Dis 12(3):240-248. https:\/\/doi.org\/10.1016\/S1473-3099(11)70318-8","journal-title":"Lancet Infect Dis"},{"key":"5577_CR94","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00025-15","author":"DE Swayne","year":"2015","unstructured":"Swayne DE, Suarez DL, Spackman E, Jadhao S, Dauphin G, Kim-Torchetti MM, McGrane J, Weaver J, Daniels P, Wong F, Selleck P, Wiyono A, Indriani R, Yupiana Y, Sawitri, Siregar E, Prajitno T, Smith D, Fouchier R (2015) Antibody titer has positive predictive value for vaccine protection against challenge with natural antigenic-drift variants of H5N1 high-pathogenicity avian influenza viruses from Indonesia. J Virol 89(7):3746-62. https:\/\/doi.org\/10.1128\/JVI.00025-15","journal-title":"J Virol"},{"key":"5577_CR95","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-020-02284-w","author":"P Bhatt","year":"2021","unstructured":"Bhatt P, Sabeena SP, Varma M, Arunkumar G (2021) Current understanding of the pathogenesis of dengue virus infection. Curr Microbiol 78(1):17-32. https:\/\/doi.org\/10.1007\/s00284-020-02284-w","journal-title":"Curr Microbiol"},{"key":"5577_CR96","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(23)02576-X","author":"G Paz-Bailey","year":"2024","unstructured":"Paz-Bailey G, Adams LE, Deen J, Anderson KB, Katzelnick LC (2024) Dengue. Lancet 403(10427):667-682. https:\/\/doi.org\/10.1016\/S0140-6736(23)02576-X","journal-title":"Lancet"},{"key":"5577_CR97","doi-asserted-by":"publisher","DOI":"10.1002\/rmv.70083","author":"AM Basri","year":"2026","unstructured":"Basri AM, Almramhi MM, Tounsi WA, Basabrain AA, Almars AI (2026) Immune evasion mechanisms of neurotropic dengue virus. Rev Med Virol 36: e70083. https:\/\/doi.org\/10.1002\/rmv.70083","journal-title":"Rev Med Virol"},{"key":"5577_CR98","doi-asserted-by":"publisher","DOI":"10.1016\/j.vacun.2026.500652","author":"D Chutia","year":"2026","unstructured":"Chutia D, Borah K, Singh LS, Sarmah D, Singha LS (2026) Updates on dengue virus infection: epidemiology, molecular pathogenesis, and clinical strategies. Vacunas 27 (3): 500652. https:\/\/doi.org\/10.1016\/j.vacun.2026.500652","journal-title":"Vacunas"},{"key":"5577_CR99","doi-asserted-by":"publisher","DOI":"10.1016\/j.virusres.2022.199018","author":"BH Kok","year":"2022","unstructured":"Kok BH, Lim HT, Lim CP, Lai NS, Leow CY, Leow CH (2022) Dengue virus infection \u2013 a review of pathogenesis, vaccines, diagnosis and therapy. Virus Res 324:199018. https:\/\/doi.org\/10.1016\/j.virusres.2022.199018","journal-title":"Virus Res"},{"key":"5577_CR100","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2025.107940","author":"N Haider","year":"2024","unstructured":"Haider N, Hasan MN, Onyango J, Billah M, Khan S, Papakonstantinou D, Paudyal P, Asaduzzaman M (2024) Global dengue epidemic worsens with record 14 million cases and 9000 deaths reported in 2024. Int J Infect Dis 158:107940. https:\/\/doi.org\/10.1016\/j.ijid.2025.107940","journal-title":"Int J Infect Dis"},{"key":"5577_CR101","doi-asserted-by":"publisher","DOI":"10.1016\/S2352-3018(24)00212-1","author":"A Carter","year":"1990","unstructured":"Carter A, Zhang M, Tram KH, Walters MK, Jahagirdar D, Brewer ED, Novotney A, Lasher D, Mpolya EA, Vongpradith A, Ma J, Verma M, Frank TD, He J et al (1990) Global, regional, and national burden of HIV\/AIDS, 1990\u20132021, and forecasts to 2050, for 204 countries and territories: the Global Burden of Disease Study 2021. Lancet HIV 11(12):e807-e822. https:\/\/doi.org\/10.1016\/S2352-3018(24)00212-1","journal-title":"Lancet HIV"},{"key":"5577_CR102","doi-asserted-by":"publisher","DOI":"10.4081\/idr.2013.s1.e6","author":"HM Naif","year":"2013","unstructured":"Naif HM (2013) Pathogenesis of HIV infection. Infect Dis Rep 5(Suppl 1):e6. https:\/\/doi.org\/10.4081\/idr.2013.s1.e6","journal-title":"Infect Dis Rep"},{"key":"5577_CR103","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(16)30118-9","author":"SC Inzaule","year":"2016","unstructured":"Inzaule SC, Ondoa P, Peter T, Mugyenyi PN, Stevens WS, Rinke de Wit TF, Hamers RL (2016) Affordable HIV drug-resistance testing for monitoring of antiretroviral therapy in sub-Saharan Africa. Lancet Infect Dis 16 (11): e267-e275. https:\/\/doi.org\/10.1016\/S1473-3099(16)30118-9","journal-title":"Lancet Infect Dis"},{"key":"5577_CR104","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2025.1636978","author":"Y Xia","year":"2026","unstructured":"Xia Y, Zhang J, Shui X, Wang C, Zhang S, Chai W, Yang Y, Shen L, Wang C (2026) Recent advances in human cytomegalovirus: a comprehensive review of pathogenic mechanisms, virus-host interactions, and antiviral strategies. Front Immunol 16:1636978. https:\/\/doi.org\/10.3389\/fimmu.2025.1636978","journal-title":"Front Immunol"},{"key":"5577_CR105","doi-asserted-by":"publisher","DOI":"10.1186\/s12871-026-03745-8","author":"Y Hu","year":"2026","unstructured":"Hu Y, Jiang Y, Zhu F, Shen J (2026) Cytomegalovirus DNAemia as a prognostic marker in critically ill hematopoietic stem cell transplant recipients with lower respiratory tract infection. BMC Anesthesiol 26(1):242. https:\/\/doi.org\/10.1186\/s12871-026-03745-8","journal-title":"BMC Anesthesiol"},{"key":"5577_CR106","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2022.971156","author":"J Cui","year":"2022","unstructured":"Cui J, Zhao K, Sun Y, Wen R, Zhang X, Li X, Long B (2022) Diagnosis and treatment for the early stage of cytomegalovirus infection during hematopoietic stem cell transplantation. Front Immunol 13:971156. https:\/\/doi.org\/10.3389\/fimmu.2022.971156","journal-title":"Front Immunol"},{"key":"5577_CR107","doi-asserted-by":"publisher","DOI":"10.1038\/s44259-025-00118-y","author":"F Horsten","year":"2025","unstructured":"Horsten F, Gillemot S, Cal\u00f2 P, Mazilier P, Maes P, Snoeck R, Andrei G (2025) Cytomegalovirus infection and drug resistance emergence during letermovir salvage therapy in a pediatric SCID patient. npj Antimicrob Resist 3(1):43. https:\/\/doi.org\/10.1038\/s44259-025-00118-y","journal-title":"npj Antimicrob Resist"},{"key":"5577_CR108","doi-asserted-by":"publisher","DOI":"10.1097\/TP.0000000000005374","author":"CN Kotton","year":"2025","unstructured":"Kotton CN, Kumar D, Manuel O, Chou S, Hayden RT, Danziger-Isakov L, Asberg A, Tedesco-Silva H, Humar A, The Transplantation Society International CMV Consensus Group (2025) The fourth international consensus guidelines on the management of cytomegalovirus in solid organ transplantation. Transplantation 109(7):1066-1110. https:\/\/doi.org\/10.1097\/TP.0000000000005374","journal-title":"Transplantation"},{"key":"5577_CR109","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2025.1693635","author":"W Zhang","year":"1990","unstructured":"Zhang W, Liu M, Ji H, Mensah E, Li S, Wang H, Lu Z, Wei S, Cheng Y, Zha L (1990) Global burden of lower respiratory infections attributable to cytomegalovirus, 1990\u20132021: a systematic analysis from the MICROBE database. Front Microbiol 16:1693635. https:\/\/doi.org\/10.3389\/fmicb.2025.1693635","journal-title":"Front Microbiol"},{"key":"5577_CR110","doi-asserted-by":"publisher","DOI":"10.1016\/j.coviro.2023.101339","author":"P Rijal","year":"2023","unstructured":"Rijal P, Donnellan FR (2023) A review of broadly protective monoclonal antibodies to treat Ebola virus disease. Curr Opin Virol 61:101339. https:\/\/doi.org\/10.1016\/j.coviro.2023.101339","journal-title":"Curr Opin Virol"},{"key":"5577_CR111","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-pathol-052016-100506","author":"L Baseler","year":"2017","unstructured":"Baseler L, Chertow DS, Johnson KM, Feldmann H, Morens DM (2017) The pathogenesis of Ebola virus disease. Annu Rev Pathol 12:387-418. https:\/\/doi.org\/10.1146\/annurev-pathol-052016-100506","journal-title":"Annu Rev Pathol"},{"key":"5577_CR112","doi-asserted-by":"publisher","DOI":"10.3390\/biochem5010003","author":"M Ndayambaje","year":"2025","unstructured":"Ndayambaje M, Wahnou H, Naya A, Oudghiri M (2025) Therapeutic management of Ebola virus: targeting oxidative stress and inflammatory pathways. Biochem 5 (1): 3. https:\/\/doi.org\/10.3390\/biochem5010003","journal-title":"Biochem"},{"key":"5577_CR113","doi-asserted-by":"publisher","DOI":"10.1016\/j.jiph.2023.10.020","author":"J Izudi","year":"1976","unstructured":"Izudi J, Bajunirwe F (1976) Case fatality rate for Ebola disease, 1976\u20132022: a meta-analysis of global data. J Infect Public Health 17(1):25-34. https:\/\/doi.org\/10.1016\/j.jiph.2023.10.020","journal-title":"J Infect Public Health"},{"key":"5577_CR114","doi-asserted-by":"publisher","DOI":"10.53894\/ijirss.v8i4.7788","author":"M Alsuhaibani","year":"2025","unstructured":"Alsuhaibani M, Almofti YA, Al-Rasheed M, Azhari A, Kandeel M (2025) Cross-continental burden of Ebola hemorrhagic fever: a meta-analytical comparison, prevalence, mortality, and risk factors. International Journal of Innovative Research and Scientific Studies 8(4): 364-372. https:\/\/doi.org\/10.53894\/ijirss.v8i4.7788","journal-title":"International Journal of Innovative Research and Scientific Studies"},{"key":"5577_CR115","doi-asserted-by":"publisher","DOI":"10.1021\/acsinfecdis.0c00872","author":"K Lanko","year":"2021","unstructured":"Lanko K, Shi C, Patil S, Delang L, Matthijnssens J, Mirabelli C, Neyts J (2021) Assessing in vitro resistance development in Enterovirus A71 in the context of combination antiviral treatment. ACS Infect Dis 7(10):2801-2806. https:\/\/doi.org\/10.1021\/acsinfecdis.0c00872","journal-title":"ACS Infect Dis"},{"key":"5577_CR116","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-026-12988-2","author":"F Li","year":"2016","unstructured":"Li F, Sun Y, Huang L, Yang R, Yao J, Cui Y, Li Q, Chen X, Xie Z (2026) Clinical and epidemiological characteristics of hospitalized children with enterovirus infection: a retrospective study from 2016 to 2025 at Beijing Children\u2019s Hospital. BMC Infect Dis 26(1):760. https:\/\/doi.org\/10.1186\/s12879-026-12988-2","journal-title":"BMC Infect Dis"},{"key":"5577_CR117","doi-asserted-by":"publisher","DOI":"10.1186\/s43088-022-00258-4","author":"G Nayak","year":"2022","unstructured":"Nayak G, Bhuyan SK, Bhuyan R, Sahu A, Kar D, Kuanar A (2022) Global emergence of Enterovirus 71: a systematic review. Beni-Suef Univ J Basic Appl Sci 11(1):78. https:\/\/doi.org\/10.1186\/s43088-022-00258-4","journal-title":"Beni-Suef Univ J Basic Appl Sci"},{"key":"5577_CR118","doi-asserted-by":"publisher","DOI":"10.2196\/85604","author":"Y Tong","year":"2026","unstructured":"Tong Y, Fan H, Wang J, Zeng X, Cheng X, Bao C, Zhu L, Ji H, Huo X (2026) Population-level impact of the Enterovirus A71 vaccination program on hand, foot, and mouth disease: ecological time-series study. JMIR Public Health Surveill 12:e85604. https:\/\/doi.org\/10.2196\/85604","journal-title":"JMIR Public Health Surveill"},{"key":"5577_CR119","doi-asserted-by":"publisher","DOI":"10.1038\/s41541-025-01184-z","author":"AM Bifani","year":"2025","unstructured":"Bifani AM, Tee HK, Antanasijevic A, Clement S, Tapparel C (2025) Enterovirus A71 priorities, challenges, and future opportunities in humoral immunity and vaccine development. npj Vaccines 10: 194. https:\/\/doi.org\/10.1038\/s41541-025-01184-z","journal-title":"npj Vaccines"},{"key":"5577_CR120","doi-asserted-by":"publisher","DOI":"10.1016\/j.virs.2022.11.004","author":"Y Zhou","year":"2023","unstructured":"Zhou Y, Zhou C, Wang K, Qiu Q, Cheng Y, Li Y, Cui P, Liang L, Li P, Deng X, Wang L, Zheng W, Gong H, Wang F, Xu M, Chu JJH, Turtle L, Yu H (2023) Diagnostic performance of different specimens in detecting Enterovirus A71 in children with hand, foot and mouth disease. Virol Sin 38(2):268-275. https:\/\/doi.org\/10.1016\/j.virs.2022.11.004","journal-title":"Virol Sin"},{"key":"5577_CR121","doi-asserted-by":"publisher","DOI":"10.1007\/s00430-025-00842-2","author":"NE Hsiao","year":"2025","unstructured":"Hsiao NE, Wang YF, Lin YC, Chou WT, Hsu LJ, Wang SM, Wang JR, Lai MD, Chen SH, Chang CF (2025) Severe Enterovirus A71 pathogenesis and immune responses in human nucleolin transgenic mice. Med Microbiol Immunol 214(1):30. https:\/\/doi.org\/10.1007\/s00430-025-00842-2","journal-title":"Med Microbiol Immunol"},{"key":"5577_CR122","doi-asserted-by":"publisher","DOI":"10.2147\/CLEP.S39728","author":"JR Franco","year":"2014","unstructured":"Franco JR, Simarro PP, Diarra A, Jannin JG (2014) Epidemiology of human African trypanosomiasis. Clin Epidemiol 6:257\u2013275. https:\/\/doi.org\/10.2147\/CLEP.S39728","journal-title":"Clin Epidemiol"},{"key":"5577_CR123","doi-asserted-by":"publisher","DOI":"10.1172\/JCI33945","author":"K Stuart","year":"2008","unstructured":"Stuart K, Brun R, Croft S, Fairlamb A, G\u00fcrtler RE, McKerrow J, Reed S, Tarleton R (2008) Kinetoplastids: related protozoan pathogens, different diseases. J Clin Invest 118(4):1301-1310. https:\/\/doi.org\/10.1172\/JCI33945","journal-title":"J Clin Invest"},{"key":"5577_CR124","doi-asserted-by":"publisher","DOI":"10.1093\/femspd\/ftaa071","author":"M Dousti","year":"2021","unstructured":"Dousti M, Manzano-Roman R, Rashidi S, Barzegar G, Ahmadpour NB, Mohammadi A, Hatam G (2021) A proteomic glimpse into the effect of antimalarial drugs on Plasmodium falciparum proteome towards highlighting possible therapeutic targets. Pathog Dis 79(1):ftaa071. https:\/\/doi.org\/10.1093\/femspd\/ftaa071","journal-title":"Pathog Dis"},{"key":"5577_CR125","doi-asserted-by":"publisher","DOI":"10.1177\/10806032241283704","author":"JE Mertens","year":"2024","unstructured":"Mertens JE (2024) The influence of climate change on vector-borne diseases in a wilderness medicine context. Wilderness Environ Med 36(1):44-60. https:\/\/doi.org\/10.1177\/10806032241283704","journal-title":"Wilderness Environ Med"},{"key":"5577_CR126","doi-asserted-by":"publisher","DOI":"10.1038\/nrdp.2018.26","author":"PG Pappas","year":"2018","unstructured":"Pappas PG, Lionakis MS, Arendrup MC, Ostrosky-Zeichner L, Kullberg BL (2018) Invasive candidiasis. Nat Rev Dis Primers 4:18026. https:\/\/doi.org\/10.1038\/nrdp.2018.26","journal-title":"Nat Rev Dis Primers"},{"key":"5577_CR127","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(17)30316-X","author":"DS Perlin","year":"2017","unstructured":"Perlin DS, Rautemaa-Richardson R, Alastruey-Izquierdo A (2017) The global problem of antifungal resistance: prevalence, mechanisms, and management. Lancet Infect Dis 17(12):e383-e392. https:\/\/doi.org\/10.1016\/S1473-3099(17)30316-X","journal-title":"Lancet Infect Dis"},{"key":"5577_CR128","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-026-12680-5","author":"C Liang","year":"2026","unstructured":"Liang C, Xue Y, Qin M, Xie X, Zeng Y, Tang X, Qiu D, Li T (2026) Epidemiology, risk factors, and mortality of Candida bloodstream infection in Yulin, China: a 7-year retrospective study. BMC Infect Dis 26:445. https:\/\/doi.org\/10.1186\/s12879-026-12680-5","journal-title":"BMC Infect Dis"},{"key":"5577_CR129","doi-asserted-by":"publisher","DOI":"10.1007\/s11046-025-00965-3","author":"J Pongracz","year":"2025","unstructured":"Pongracz J, Szabo T, Juh\u00e1sz E, Ivan M, Kristof K (2025) Epidemiology, risk factors and mortality of fungal bloodstream infection: 14 years of experience at a teaching hospital. Mycopathologia 190(4):55. https:\/\/doi.org\/10.1007\/s11046-025-00965-3","journal-title":"Mycopathologia"},{"key":"5577_CR130","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-020-05536-z","author":"L Zhong","year":"2020","unstructured":"Zhong L, Zhang S, Tang K, Zhou F, Zheng C, Zhang K, Cai J, Zhou H, Wang Y, Tian B, Zhang Z, Cui W, Dong Z, Zhang G (2020) Clinical characteristics, risk factors and outcomes of mixed Candida albicans\/bacterial bloodstream infections. BMC Infect Dis 20(1):810. https:\/\/doi.org\/10.1186\/s12879-020-05536-z","journal-title":"BMC Infect Dis"},{"key":"5577_CR131","doi-asserted-by":"publisher","DOI":"10.1111\/myc.13727","author":"F Kovacs","year":"2024","unstructured":"Kovacs F, Balla N, Boz\u00f3 A, Harmath A, Jakab \u00c1, T\u00f3th Z, Nagy F, Majoros L, Kov\u00e1cs R (2024) Epidemiology, clinical characteristics, outcome and biofilm forming properties in candidaemia: a single-centre retrospective 4-year analysis from Hungary. Mycoses 67(4):e13727. https:\/\/doi.org\/10.1111\/myc.13727","journal-title":"Mycoses"},{"key":"5577_CR132","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciag252","author":"JAW Gold","year":"2016","unstructured":"Gold JAW, Benedict K, Lyman M, Toda M, Little JS, Ostrosky-Zeichner L (2016) Candida glabrata emerges as the most common cause of candidemia: analysis of a large hospital-based database, United States, 2016\u20132024. Clin Infect Dis 13:ciag252. https:\/\/doi.org\/10.1093\/cid\/ciag252","journal-title":"Clin Infect Dis"},{"key":"5577_CR133","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens14080806","author":"JP Cabrera-Guerrero","year":"2025","unstructured":"Cabrera-Guerrero JP, Garc\u00eda-Salazar E, Hernandez Silva G, Chinney Herrera A, Mart\u00ednez-Herrera E, Pinto-Almaz\u00e1n R, Fr\u00edas-De-Le\u00f3n MG, Castro-Fuentes CA (2025) Candidemia: an update on epidemiology, risk factors, diagnosis, susceptibility, and treatment. Pathogens 14(8):806. https:\/\/doi.org\/10.3390\/pathogens14080806","journal-title":"Pathogens"},{"key":"5577_CR134","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00140-18","author":"JP Latge","year":"2019","unstructured":"Latge JP, Chamilos G (2019) Aspergillus fumigatus and aspergillosis in 2019. Clin Microbiol Rev 33(1):e00140-18. https:\/\/doi.org\/10.1128\/CMR.00140-18","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR135","doi-asserted-by":"publisher","DOI":"10.1016\/j.fgb.2026.104076","author":"A Mendonca","year":"2026","unstructured":"Mendonca A, Sabino R, Ver\u00edssimo C, Sampaio P, Franco-Duarte R (2026) Decoding azole resistance mechanisms and pathogenicity in Aspergillus section Fumigati through genomic analysis. Fungal Genet Biol 184:104076. https:\/\/doi.org\/10.1016\/j.fgb.2026.104076","journal-title":"Fungal Genet Biol"},{"key":"5577_CR136","doi-asserted-by":"publisher","DOI":"10.21037\/jtd-2025-110","author":"JL Duan","year":"2025","unstructured":"Duan JL, Lu C, Jiang Y, Chen ZW, Wu HK, Liu ZH, Huang PR, Guan WJ, Rautemaa-Richardson R, Richardson MD, Eades CP, Cheng LL (2025) Diagnostic performance of Aspergillus-specific immunoglobulin G immunochromatographic and enzyme-linked immunosorbent assay testing in chronic pulmonary aspergillosis: comparative analysis across subtypes and influencing factors. J Thorac Dis 17(10):8467-8476. https:\/\/doi.org\/10.21037\/jtd-2025-110","journal-title":"J Thorac Dis"},{"key":"5577_CR137","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciaf653","author":"TJ Walsh","year":"2026","unstructured":"Walsh TJ, Sicignano D, Mastropietro M, Lovelace B, Coleman CI (2026) Aspergillosis-attributable mortality in the United States: analysis of death certificate data. Clin Infect Dis 82(1):86-92. https:\/\/doi.org\/10.1093\/cid\/ciaf653","journal-title":"Clin Infect Dis"},{"key":"5577_CR138","doi-asserted-by":"publisher","DOI":"10.1093\/mmy\/myad129","author":"CO Morrissey","year":"2024","unstructured":"Morrissey CO, Kim HY, Duong TN, Moran E, Alastruey-Izquierdo A, Denning DW, Perfect JR, Nucci M, Chakrabarti A, Rickerts V, Chiller TM, Wahyuningsih R, Hamers RL, Cassini A, Gigante V, Sati H, Alffenaar JW, Beardsley J (2024) Aspergillus fumigatus\u2014a systematic review to inform the World Health Organization priority list of fungal pathogens. Med Mycol 62(6):myad129. https:\/\/doi.org\/10.1093\/mmy\/myad129","journal-title":"Med Mycol"},{"key":"5577_CR139","doi-asserted-by":"publisher","DOI":"10.1007\/s40475-026-00358-6","author":"RA Ramirez-Trujillo","year":"2026","unstructured":"Ramirez-Trujillo RA, Luna MC, Gonzalez A (2026) Global epidemiology of fungal infections in patients with multiple myeloma: a systematic review. Curr Trop Med Rep 13:1. https:\/\/doi.org\/10.1007\/s40475-026-00358-6","journal-title":"Curr Trop Med Rep"},{"key":"5577_CR140","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11021-2","author":"X Chen","year":"2016","unstructured":"Chen X, Shen M, Feng Q, Yang G, Tian R, Yao S, Zha H (2025) Epidemiological characteristics, antifungal susceptibility, and mortality factors of candidemia in adults at a tertiary teaching hospital in Zunyi, China (2016\u20132023). BMC Infect Dis 25: 726. https:\/\/doi.org\/10.1186\/s12879-025-11021-2","journal-title":"BMC Infect Dis"},{"key":"5577_CR141","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2026.106692","author":"C Logan","year":"2026","unstructured":"Logan C, Allebone-Salt P, Mazzella A, Hemsley C, Goodman A, Ward C, Fife A, Schelenz S, Abdolrasouli A, Bicanic T (2026) A five-year multicentre evaluation of candidaemia in UK adults: epidemiology, risk factors and outcomes. J Infect 92(2):106692. https:\/\/doi.org\/10.1016\/j.jinf.2026.106692","journal-title":"J Infect"},{"key":"5577_CR142","doi-asserted-by":"publisher","DOI":"10.3390\/jof11110788","author":"N Unal","year":"2025","unstructured":"Unal N, Karakoyun AS, \u00dcnal \u0130, Turun\u00e7 T, Lass-Fl\u00f6rl C, Ilkit M (2025) Epidemiological characteristics and mortality predictors of candidemia due to Candida albicans: a single-center experience from T\u00fcrkiye. J Fungi 11(11):788. https:\/\/doi.org\/10.3390\/jof11110788","journal-title":"J Fungi"},{"key":"5577_CR143","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2026.1752304","author":"J Wu","year":"2026","unstructured":"Wu J, Jiang C, Wang H, Chen T, Chen X, Da W (2026) The pathogenicity and future treatment strategies of Candida albicans. Front Cell Infect Microbiol 16:1752304. https:\/\/doi.org\/10.3389\/fcimb.2026.1752304","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR144","doi-asserted-by":"publisher","DOI":"10.1039\/D6RA00286B","author":"AM Saleh","year":"2026","unstructured":"Saleh AM, Hassan RYA, Badawey AM, Marzouk HM (2026) Toward sustainable diagnostics for Candida albicans: the role of artificial intelligence in analytical chemistry from data processing to Python-based blueness and redness evaluation metrics. RSC Adv 16(20):18389\u201318405. https:\/\/doi.org\/10.1039\/D6RA00286B","journal-title":"RSC Adv"},{"key":"5577_CR145","doi-asserted-by":"publisher","DOI":"10.1016\/j.nmni.2026.101735","author":"M Maliehe","year":"2026","unstructured":"Maliehe M, Rapeso PM, Mdana K, McQuire CK, Moukangwe L, Ntshangase NF, Mjokane N, Skosana ZT, Ogundeji AO, Folorunso OS, Pohl CH, Albertyn J, Sebolai OM (2026) A review of the current anti-Cryptococcus antifungals and emerging treatment strategies. New Microbes New Infect 70:101735. https:\/\/doi.org\/10.1016\/j.nmni.2026.101735","journal-title":"New Microbes New Infect"},{"key":"5577_CR146","doi-asserted-by":"publisher","DOI":"10.1016\/j.microb.2025.100493","author":"Y Manogaran","year":"2025","unstructured":"Manogaran Y, Ramasamy P (2025) Cryptococcus neoformans and Cryptococcus gattii species in urban tropics: a comprehensive review of pathogenicity and resistance. Microbe 8: 100493. https:\/\/doi.org\/10.1016\/j.microb.2025.100493","journal-title":"Microbe"},{"key":"5577_CR147","doi-asserted-by":"publisher","DOI":"10.4269\/ajtmh.23-0818","author":"F Dai","year":"2024","unstructured":"Dai F, Yu Y, Lou J, Lu X (2024) A case of cryptococcosis due to a new Cryptococcus neoformans sequence type in a patient with human immunodeficiency virus infection. Am J Trop Med Hyg 112(2):373-376. https:\/\/doi.org\/10.4269\/ajtmh.23-0818","journal-title":"Am J Trop Med Hyg"},{"key":"5577_CR148","doi-asserted-by":"publisher","DOI":"10.1093\/mmy\/myae043","author":"A Dao","year":"2024","unstructured":"Dao A, Kim HY, Garnham K, Kidd S, Sati H, Perfect J, Sorrell TC, Harrison T, Rickerts V, Gigante V, Alastruey-Izquierdo A, Alffenaar JW, Morrissey CO, Chen SC, Beardsley J (2024) Cryptococcosis-a systematic review to inform the World Health Organization fungal priority pathogens list. Med Mycol 62(6):myae043. https:\/\/doi.org\/10.1093\/mmy\/myae043","journal-title":"Med Mycol"},{"key":"5577_CR149","doi-asserted-by":"publisher","DOI":"10.1111\/myc.70091","author":"AG Stewart","year":"2025","unstructured":"Stewart AG, Laupland KB, Edwards F, Gassiep I, Koo S, Hammond SP, Chen SCA, Slavin MA (2025) Clinical characteristics and outcomes in patients with cryptococcaemia from a large population-based cohort. Mycoses 68(7):e70091. https:\/\/doi.org\/10.1111\/myc.70091","journal-title":"Mycoses"},{"key":"5577_CR150","doi-asserted-by":"publisher","DOI":"10.3390\/jof12010067","author":"J Lizarazo","year":"2017","unstructured":"Lizarazo J, Agudelo CI, Escand\u00f3n P, Casta\u00f1eda E (2026) Cryptococcosis in Colombia: analysis of data from laboratory-based surveillance 2017\u20132024. J Fungi 12(1):67. https:\/\/doi.org\/10.3390\/jof12010067","journal-title":"J Fungi"},{"key":"5577_CR151","doi-asserted-by":"publisher","DOI":"10.1093\/mmy\/myz112","author":"MA Sayeed","year":"2020","unstructured":"Sayeed MA, Farooqi J, Jabeen K, Mahmood SF (2020) Comparison of risk factors and outcomes of Candida auris candidemia with non-Candida auris candidemia: a retrospective study from Pakistan. Med Mycol 58(6):721-729. https:\/\/doi.org\/10.1093\/mmy\/myz112","journal-title":"Med Mycol"},{"key":"5577_CR152","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2025.12.022","author":"J Salmanton-Garcia","year":"2026","unstructured":"Salmanton-Garcia J, Almeida JN Jr, Colombo AL (2026) Candidozyma auris (formerly Candida auris): resistant, long lasting, and everywhere. Clin Microbiol Infect 32(3):374-381. https:\/\/doi.org\/10.1016\/j.cmi.2025.12.022","journal-title":"Clin Microbiol Infect"},{"key":"5577_CR153","doi-asserted-by":"publisher","DOI":"10.1128\/aac.00570-24","author":"M Castanheira","year":"2024","unstructured":"Castanheira M, Deshpande LM, Rhomberg PR, Carvalhaes CG (2024) Recent increase in Candida auris frequency in the SENTRY surveillance program: antifungal activity and genotypic characterization. Antimicrob Agents Chemother 68(10):e0057024. https:\/\/doi.org\/10.1128\/aac.00570-24","journal-title":"Antimicrob Agents Chemother"},{"key":"5577_CR154","doi-asserted-by":"publisher","DOI":"10.15585\/mmwr.mm6901a2","author":"B Ostrowsky","year":"2019","unstructured":"Ostrowsky B, Greenko J, Adams E et al (2019) Candida auris isolates resistant to three classes of antifungal medications\u2014New York, 2019. MMWR Morb Mortal Wkly Rep 69(1):6-9. https:\/\/doi.org\/10.15585\/mmwr.mm6901a2","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"5577_CR155","doi-asserted-by":"publisher","DOI":"10.1186\/s12929-026-01230-5","author":"DRA Sanya","year":"2026","unstructured":"Sanya DRA, Arevalo AV, On\u00e9sime D, Nobile CJ (2026) The emerging pathogen Candida auris: host interactions and disease drivers. J Biomed Sci 33:19. https:\/\/doi.org\/10.1186\/s12929-026-01230-5","journal-title":"J Biomed Sci"},{"key":"5577_CR156","doi-asserted-by":"publisher","DOI":"10.3201\/eid3204.251407","author":"H Ismail","year":"2026","unstructured":"Ismail H, Perovic O, Mpembe R, Lowman W, Govind C, Ekermans P et al (2026) Accelerated increase in Candida auris bloodstream infections during COVID-19 pandemic, South Africa. Emerg Infect Dis 32(4):563\u2013572. https:\/\/doi.org\/10.3201\/eid3204.251407","journal-title":"Emerg Infect Dis"},{"key":"5577_CR157","doi-asserted-by":"publisher","DOI":"10.1016\/S2589-7500(24)00242-5","author":"J Rodriguez-Manzano","year":"2024","unstructured":"Rodriguez-Manzano J, Subramaniam S, Uchea C, Szostak-Lipowicz KM, Freeman J, Rauch M, Tinto H, Zar HJ, D\u2019Alessandro U, Holmes AH, Awandare GA (2024) Innovative diagnostic technologies: navigating regulatory frameworks through advances, challenges, and future prospects. Lancet Digit Health 6(12):e934-e943. https:\/\/doi.org\/10.1016\/S2589-7500(24)00242-5","journal-title":"Lancet Digit Health"},{"key":"5577_CR158","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.10.3.444","author":"LG Reimer","year":"1997","unstructured":"Reimer LG, Wilson ML, Weinstein MP (1997) Update on detection of bacteremia and fungemia. Clin Microbiol Rev 10(3):444-465. https:\/\/doi.org\/10.1128\/CMR.10.3.444","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR159","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2019.11.017","author":"B Lamy","year":"2020","unstructured":"Lamy B, Sundqvist M, Idelevich EA (2020) Bloodstream infections \u2013 standard and progress in pathogen diagnostics. Clin Microbiol Infect 26(2):142-150. https:\/\/doi.org\/10.1016\/j.cmi.2019.11.017","journal-title":"Clin Microbiol Infect"},{"key":"5577_CR160","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciac004","author":"PB Mazi","year":"2022","unstructured":"Mazi PB, Olsen MA, Stwalley D, Rauseo AM, Ayres C, Powderly WG, Spec A (2022) Attributable mortality of Candida bloodstream infections in the modern era: a propensity score analysis. Clin Infect Dis 75(6):1031-1036. https:\/\/doi.org\/10.1093\/cid\/ciac004","journal-title":"Clin Infect Dis"},{"key":"5577_CR161","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.01684-25","author":"HY Huang","year":"2025","unstructured":"Huang HY, Lin YC, Lu PL, Wang YL, Chen TC, Chang K, Lin SY (2025) Clinical insights into mixed Candida and bacterial bloodstream infections: a retrospective cohort study. Microbiol Spectr 13(10):e0168425. https:\/\/doi.org\/10.1128\/spectrum.01684-25","journal-title":"Microbiol Spectr"},{"key":"5577_CR162","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-022-07267-9","author":"SJ Mun","year":"2022","unstructured":"Mun SJ, Kim SH, Kim HT, Moon C, Wi YM (2022) The epidemiology of bloodstream infection contributing to mortality: the difference between community-acquired, healthcare-associated, and hospital-acquired infections. BMC Infect Dis 22(1):336. https:\/\/doi.org\/10.1186\/s12879-022-07267-9","journal-title":"BMC Infect Dis"},{"key":"5577_CR163","doi-asserted-by":"publisher","DOI":"10.1186\/s13054-026-05886-1","author":"G Scaglione","year":"2020","unstructured":"Scaglione G, Colaneri M, Offer M, Montrucchio G, Genovese C, Viaggi B, Dore F, Tricella G, Dalfino L, Monti G, Gori A et al (2026) Epidemiology, resistance patterns, and outcomes of candidemia acquired in Italian intensive care units: insights from the GIVITI network (2020\u20132024). Crit Care. https:\/\/doi.org\/10.1186\/s13054-026-05886-1","journal-title":"Crit Care"},{"key":"5577_CR164","doi-asserted-by":"publisher","DOI":"10.1097\/JCMA.0000000000000695","author":"YC Chang","year":"2022","unstructured":"Chang YC, Chen JS, Yin CH, Lee SSJ, Chen WC (2022) Candidemia in hospitalized cirrhotic patients with bloodstream infection: a retrospective analysis and brief summary of published studies. J Chin Med Assoc 85(3):295-303 https:\/\/doi.org\/10.1097\/JCMA.0000000000000695","journal-title":"J Chin Med Assoc"},{"key":"5577_CR165","doi-asserted-by":"publisher","DOI":"10.1164\/rccm.202410-2076OC","author":"Y Xia","year":"2025","unstructured":"Xia Y, Jiang W, Zhu X, Pan B, Chen T, Wang Y, Liao W, Pan W (2025) Global, regional, and national burden of pulmonary fungal infections 1990\u20132021. Am J Respir Crit Care Med 211(6):1007-1017. https:\/\/doi.org\/10.1164\/rccm.202410-2076OC","journal-title":"Am J Respir Crit Care Med"},{"key":"5577_CR166","unstructured":"World Health Organization (WHO) (2025) National antimicrobial resistance (AMR) survey on bloodstream infections \u2013 Indonesia.https:\/\/www.who.int\/indonesia\/news\/detail\/13-02-2025-national-amr-survey-bsi"},{"key":"5577_CR167","doi-asserted-by":"publisher","DOI":"10.3390\/jof7080667","author":"Y Hassan","year":"2021","unstructured":"Hassan Y, Chew SY, Than LTL (2021) Candida glabrata: pathogenicity and resistance mechanisms for adaptation and survival. J Fungi 7(8):667. https:\/\/doi.org\/10.3390\/jof7080667","journal-title":"J Fungi"},{"key":"5577_CR168","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms7020039","author":"K Kumar","year":"2019","unstructured":"Kumar K, Askari F, Sahu MS, Kaur R (2019) Candida glabrata: a lot more than meets the eye. Microorganisms 7(2):39. https:\/\/doi.org\/10.3390\/microorganisms7020039","journal-title":"Microorganisms"},{"key":"5577_CR169","doi-asserted-by":"publisher","DOI":"10.1042\/BJ20140598","author":"VK Srivastava","year":"2014","unstructured":"Srivastava VK, Suneetha KJ, Kaur R (2014) A systematic analysis reveals an essential role for high-affinity iron uptake system, haemolysin and CFEM domain-containing protein in iron homoeostasis and virulence in Candida glabrata. Biochem J 463(1):103-114. https:\/\/doi.org\/10.1042\/BJ20140598","journal-title":"Biochem J"},{"key":"5577_CR170","doi-asserted-by":"publisher","DOI":"10.1016\/j.ebiom.2025.105633","author":"V Di Pilato","year":"2025","unstructured":"Di Pilato V, Bonaiuto C, Morecchiato F, Antonelli A, Giani T, Rossolini GM (2025) Next-generation diagnostics of bloodstream infections enabled by rapid whole-genome sequencing of bacterial cells purified from blood cultures. eBioMedicine 114:105633. https:\/\/doi.org\/10.1016\/j.ebiom.2025.105633","journal-title":"eBioMedicine"},{"key":"5577_CR171","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.01182","author":"W Li","year":"2019","unstructured":"Li W, Sun E, Wang Y, Pan H, Zhang Y, Li Y, Zhang X, Li C, Du L, Wang C (2019) Rapid identification and antimicrobial susceptibility testing for urinary tract pathogens by direct analysis of urine samples using a MALDI-TOF MS-based combined protocol. Front Microbiol 10:1182. https:\/\/doi.org\/10.3389\/fmicb.2019.01182","journal-title":"Front Microbiol"},{"key":"5577_CR172","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-86295-2","author":"LM Lai","year":"2025","unstructured":"Lai LM, Chen Q, Liu Y, Zhao R, Cao ML, Yuan L (2025) The value of metagenomic next-generation sequencing in the diagnosis of fever of unknown origin. Sci Rep 15: 1963. https:\/\/doi.org\/10.1038\/s41598-025-86295-2","journal-title":"Sci Rep"},{"key":"5577_CR173","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-024-10396-y","author":"H Kitagawa","year":"2025","unstructured":"Kitagawa H, Kojima M, Tadera K, Kogasaki S, Omori K, Nomura T, Shigemoto N, Hiyama E, Ohge H (2025) Clinical diagnostic performance of droplet digital PCR for pathogen detection in patients with Escherichia coli bloodstream infection: a prospective observational study. BMC Infect Dis 25(1):22. https:\/\/doi.org\/10.1186\/s12879-024-10396-y","journal-title":"BMC Infect Dis"},{"key":"5577_CR174","doi-asserted-by":"publisher","DOI":"10.3390\/jcm13020306","author":"R Overbeek","year":"2024","unstructured":"Overbeek R, Leitl CJ, Stoll SE, Wetsch WA, Kammerer T, Mathes A, B\u00f6ttiger BW, Seifert H, Hart D, Dusse F (2024) The value of next-generation sequencing in diagnosis and therapy of critically ill patients with suspected bloodstream infections: a retrospective cohort study. J Clin Med 13(2):306. https:\/\/doi.org\/10.3390\/jcm13020306","journal-title":"J Clin Med"},{"key":"5577_CR175","doi-asserted-by":"publisher","DOI":"10.1021\/acssensors.4c03175","author":"CLC Carvalho","year":"2024","unstructured":"Carvalho CLC, Nascimento SQ, Bertaglia T, Faria LCI, Manuli ER, Pereira GM, Silva WC, Costa CM, Maestu JF, Lanceros-Mendez S, Oliveira JO, Sabino EC, Crespilho FN (2024) Sustainable electrochemical-magnetic biosensor fabricated from recycled materials for label-free detection of SARS-CoV-2 in human saliva. ACS Sens 10(3): 1970\u20131985. https:\/\/doi.org\/10.1021\/acssensors.4c03175","journal-title":"ACS Sens"},{"key":"5577_CR176","doi-asserted-by":"publisher","DOI":"10.1021\/acsnano.4c02434","author":"M Eryilmaz","year":"2024","unstructured":"Eryilmaz M, Goncharov A, Han G-R, Joung H-A, Ballard ZS, Ghosh R, Zhang Y, Di Carlo D, Ozcan A (2024) A paper-based multiplexed serological test to monitor immunity against SARS-COV-2 using machine learning. ACS Nano 18(26):16819-16831. https:\/\/doi.org\/10.1021\/acsnano.4c02434","journal-title":"ACS Nano"},{"key":"5577_CR177","doi-asserted-by":"publisher","DOI":"10.1016\/j.heliyon.2024.e29372","author":"G Guncar","year":"2023","unstructured":"Guncar G, Kukar M, Smole T, Moskon S, Vovko T, Podnar S, Cernelc P, Brvar M, Notar M, Koster M, Tusek Jelenc M, Notar M (2023) Differentiating viral and bacterial infections: a machine learning model based on routine blood test values. Heliyon 10(8):e29372. https:\/\/doi.org\/10.1016\/j.heliyon.2024.e29372","journal-title":"Heliyon"},{"key":"5577_CR178","doi-asserted-by":"publisher","DOI":"10.1038\/s41576-019-0113-7","author":"CY Chiu","year":"2019","unstructured":"Chiu CY, Miller SA (2019) Clinical metagenomics. Nat Rev Genet 20: 341\u2013355. https:\/\/doi.org\/10.1038\/s41576-019-0113-7","journal-title":"Nat Rev Genet"},{"key":"5577_CR179","doi-asserted-by":"publisher","DOI":"10.3390\/life15020209","author":"M Afzal","year":"2025","unstructured":"Afzal M, Agarwal S, Elshaikh RH, Babker AMA, Osman EAI, Choudhary RK, Jaiswal S, Zahir F, Prabhakar PK, Abbas AM, Shalabi MG, Sah AK (2025) Innovative diagnostic approaches and challenges in the management of HIV: bridging basic science and clinical practice. Life (Basel) 15(2): 209. https:\/\/doi.org\/10.3390\/life15020209","journal-title":"Life (Basel)"},{"key":"5577_CR180","doi-asserted-by":"publisher","DOI":"10.1038\/s43856-024-00487-x","author":"X Shi","year":"2024","unstructured":"Shi X, Sharma S, Chmielewski RA, Murphy KR, Connolly SM, Luu TV, Flanagan JL, Zubkov MA, Nguyen TM, Tang Y-W, Caliendo AM, Kirby JE, Baron EJ (2024) Rapid diagnosis of bloodstream infections using a culture-free phenotypic platform. Commun Med 4(1):77. https:\/\/doi.org\/10.1038\/s43856-024-00487-x","journal-title":"Commun Med"},{"key":"5577_CR181","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.00458-24","author":"B Berinson","year":"2024","unstructured":"Berinson B, Both A, Huang J, Leonhardt C, Belmar Campos C, Christner M, Aepfelbacher M, Rohde H, Maurer FP (2024) A multicenter evaluation of a novel microfluidic rapid AST assay for Gram-negative bloodstream infections. J Clin Microbiol 62(10):e0045824. https:\/\/doi.org\/10.1128\/jcm.00458-24","journal-title":"J Clin Microbiol"},{"key":"5577_CR182","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2420166122","author":"J Lim","year":"2025","unstructured":"Lim J, Van Ab K, Koprowski K, Wester M, Valera E, Bashir R (2025) Amplification-free, OR-gated CRISPR-Cascade reaction for pathogen detection in blood samples. Proc Natl Acad Sci U S A 122 (11): e2420166122. https:\/\/doi.org\/10.1073\/pnas.2420166122","journal-title":"Proc Natl Acad Sci U S A"},{"key":"5577_CR183","doi-asserted-by":"publisher","unstructured":"Swanson K, Liu G, Catacutan DB, Arnold A, Zou J, Stokes JM, et al. (2024) Generative AI for designing and validating easily synthesizable and structurally novel antibiotics. Nat Mach Intell 6:338\u2013353. https:\/\/doi.org\/10.1038\/s42256-024-00809-7","DOI":"10.1038\/s42256-024-00809-7"},{"key":"5577_CR184","doi-asserted-by":"publisher","DOI":"10.1016\/j.sbi.2023.102733","author":"P Szymczak","year":"2023","unstructured":"Szymczak P, Szczurek E (2023) Artificial intelligence-driven antimicrobial peptide discovery. Curr Opin Struct Biol 83:102733. https:\/\/doi.org\/10.1016\/j.sbi.2023.102733","journal-title":"Curr Opin Struct Biol"},{"key":"5577_CR185","doi-asserted-by":"publisher","DOI":"10.4292\/wjgpt.v8.i3.162","author":"DM Lin","year":"2017","unstructured":"Lin DM, Koskella B, Lin HC (2017) Phage therapy: an alternative to antibiotics in the age of multi-drug resistance. World J Gastrointest Pharmacol Ther 8(3):162\u2013173. https:\/\/doi.org\/10.4292\/wjgpt.v8.i3.162","journal-title":"World J Gastrointest Pharmacol Ther"},{"key":"5577_CR186","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2024.1347750","author":"L Bo","year":"2024","unstructured":"Bo L, Sun H, Li YD, Zhu J, Wurpel JND, Lin H, Chen ZS (2024) Combating antimicrobial resistance: the silent war. Front Pharmacol 15:1347750. https:\/\/doi.org\/10.3389\/fphar.2024.1347750","journal-title":"Front Pharmacol"},{"key":"5577_CR187","doi-asserted-by":"publisher","DOI":"10.1186\/s12873-025-01177-0","author":"LM von Beck","year":"2025","unstructured":"von Beck LM, Rapszky GA, Kiss VE, Sandor S, Gaal-Marschal S, Berenyi T, Varga C, Fenyves BG (2025) Empiric antibiotic therapy resistance and mortality in emergency department patients with bloodstream infection: a retrospective cohort study. BMC Emerg Med 25(1):18. https:\/\/doi.org\/10.1186\/s12873-025-01177-0","journal-title":"BMC Emerg Med"},{"key":"5577_CR188","doi-asserted-by":"crossref","unstructured":"Tice AD (2010) Outpatient parenteral antimicrobial therapy. In: Mandell GL, Bennett JE, Dolin R (eds) Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases, 7th edn. Churchill Livingstone Elsevier, Philadelphia, PA, pp. 699\u2013703. https:\/\/shop.elsevier.com\/books\/mandell-douglas-and-bennetts-principles-and-practice-of-infectious-diseases\/mandell\/978-0-443-06839-3","DOI":"10.1016\/B978-0-443-06839-3.00048-5"},{"key":"5577_CR189","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.05041-11","author":"PD Tamma","year":"2012","unstructured":"Tamma PD, Cosgrove SE, Maragakis LL (2012) Combination therapy for treatment of infections with Gram-negative bacteria. Clin Microbiol Rev 25(3):450-470. https:\/\/doi.org\/10.1128\/CMR.05041-11","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR190","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa2404991","author":"M Sundqvist","year":"2024","unstructured":"Sundqvist M, Langeland N (2024) Antibiotic treatment for 7 versus 14 days in patients with bloodstream infection. N Engl J Med 392(11):1065-1078. https:\/\/doi.org\/10.1056\/NEJMoa2404991","journal-title":"N Engl J Med"},{"key":"5577_CR191","doi-asserted-by":"publisher","DOI":"10.1001\/jamanetworkopen.2023.52314","author":"S Tingsgard","year":"2024","unstructured":"Tingsgard S, Israelsen SB, J\u00f8rgensen HL, Qstergaard C, Benfield T (2024) Early switch from intravenous to oral antibiotics for patients with uncomplicated Gram-negative bacteremia. JAMA Netw Open 7(1):e2352314. https:\/\/doi.org\/10.1001\/jamanetworkopen.2023.52314","journal-title":"JAMA Netw Open"},{"key":"5577_CR192","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciae403","author":"PD Tamma","year":"2024","unstructured":"Tamma PD, Heil EL, Justo JA, Mathers AJ, Satlin MJ, Bonomo RA (2024) Infectious Diseases Society of America 2024 guidance on the treatment of antimicrobial-resistant Gram-negative infections. Clin Infect Dis 7:ciae403. https:\/\/doi.org\/10.1093\/cid\/ciae403","journal-title":"Clin Infect Dis"},{"key":"5577_CR193","doi-asserted-by":"publisher","DOI":"10.1016\/j.lana.2024.100943","author":"K Allel","year":"2018","unstructured":"Allel K, Peters A, Haghparast-Bidgoli H, Spencer-Sandino M, Conejeros J, Garcia P, Pouwels KB, Yakob L, Munita JM, Undurraga EA (2024) Excess burden of antibiotic-resistant bloodstream infections: evidence from a multicentre retrospective cohort study in Chile, 2018\u20132022. Lancet Reg Health Am 40:100943. https:\/\/doi.org\/10.1016\/j.lana.2024.100943","journal-title":"Lancet Reg Health Am"},{"key":"5577_CR194","doi-asserted-by":"publisher","DOI":"10.3201\/eid3006.240255","author":"N Hashem","year":"2024","unstructured":"Hashem N, Yek C (2024) Antimicrobial stewardship in non-traditional settings. Emerg Infect Dis 30(6):1303. https:\/\/doi.org\/10.3201\/eid3006.240255","journal-title":"Emerg Infect Dis"},{"key":"5577_CR195","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkae306","author":"AE Boutzoukas","year":"2024","unstructured":"Boutzoukas AE, Mackow N, Giri A, Komarow L, Hill C, Chen L, Doi Y, Satlin MJ, Arias C, Wang M, Mora Moreo L, Herc E, Cober E, Weston G, Patel R, Bonomo RA, Fowler V, van Duin D (2024) Increased mortality in hospital- compared to community-onset carbapenem-resistant enterobacterales infections. J Antimicrob Chemother 79(11):2916-2922. https:\/\/doi.org\/10.1093\/jac\/dkae306","journal-title":"J Antimicrob Chemother"},{"key":"5577_CR196","doi-asserted-by":"publisher","DOI":"10.33321\/cdi.2024.48.32","author":"M Hinze","year":"2024","unstructured":"Hinze M (2024) High rate of antimicrobial resistance reported in paediatric bloodstream infections. Med Today 48:1-19. https:\/\/doi.org\/10.33321\/cdi.2024.48.32","journal-title":"Med Today"},{"key":"5577_CR197","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-024-10133-5","author":"HS Sader","year":"2024","unstructured":"Sader HS, Kimbrough JH, Mendes RE, Castanheira M (2024) Antimicrobial susceptibility of Enterobacterales causing bloodstream infection in United States medical centres: comparison of aztreonam-avibactam with beta-lactams active against carbapenem-resistant Enterobacterales. BMC Infect Dis 24(1):1242. https:\/\/doi.org\/10.1186\/s12879-024-10133-5","journal-title":"BMC Infect Dis"},{"key":"5577_CR198","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbapap.2008.11.005","author":"AH Delcour","year":"2009","unstructured":"Delcour AH (2009) Outer membrane permeability and antibiotic resistance. Biochim Biophys Acta 1794(5):808-816. https:\/\/doi.org\/10.1016\/j.bbapap.2008.11.005","journal-title":"Biochim Biophys Acta"},{"key":"5577_CR199","doi-asserted-by":"publisher","DOI":"10.1186\/s13613-020-00713-4","author":"J-F Timsit","year":"2020","unstructured":"Timsit J-F, Baleine J, Bernard L, Calvino-Gunther S, Darmon M et al (2020) Expert consensus-based clinical practice guidelines management of intravascular catheters in the intensive care unit. Ann Intensiv Care 10(1):118. https:\/\/doi.org\/10.1186\/s13613-020-00713-4","journal-title":"Ann Intensiv Care"},{"key":"5577_CR200","doi-asserted-by":"publisher","DOI":"10.3389\/fmed.2024.1431791","author":"L Chiscano-Camon","year":"2024","unstructured":"Chiscano-Camon L, Ruiz-Sanmartin A, Bajana I, Bastidas J, Lopez-Martinez R, Franco-Jarava C, Gonzalez JJ, Larrosa N, Riera J, Nuvials-Casals X, Ruiz-Rodriguez JC, Ferrer R (2024) Current perspectives in the management of sepsis and septic shock. Front Med 11:1431791. https:\/\/doi.org\/10.3389\/fmed.2024.1431791","journal-title":"Front Med"},{"key":"5577_CR201","doi-asserted-by":"publisher","DOI":"10.1016\/j.ajic.2018.02.022","author":"CE Edmiston","year":"2018","unstructured":"Edmiston CE, Garcia BSR, Barnden M, DeBaun B, Johnson HB (2018) Rapid diagnostics for bloodstream infections: a primer for infection preventionists. Am J Infect Control 46(9):1060-1068. https:\/\/doi.org\/10.1016\/j.ajic.2018.02.022","journal-title":"Am J Infect Control"},{"key":"5577_CR202","doi-asserted-by":"publisher","DOI":"10.2807\/1560-7917.ES.2016.21.33.30319","author":"AJ Stewardson","year":"2010","unstructured":"Stewardson AJ, Arthur A, Jan B, Nicholas G, Martin S, Rodolphe M et al (2016 ) The health and economic burden of bloodstream infections caused by antimicrobial-susceptible and non-susceptible Enterobacteriaceae and Staphylococcus aureus in European hospitals, 2010 and 2011: a multicentre retrospective cohort study. Euro Surveill 21(33):30319. https:\/\/doi.org\/10.2807\/1560-7917.ES.2016.21.33.30319","journal-title":"Euro Surveill"},{"key":"5577_CR203","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2024.107769","author":"L Zha","year":"2025","unstructured":"Zha L, Li S, Guo J, Hu Y, Pan L, Wang H, Zhou Y, Xu Q, Lu Z, Kong X, Tong X, Cheng Y (2025) Global and regional burden of bloodstream infections caused by carbapenem-resistant Gram-negative bacteria in 2019: A systematic analysis from the MICROBE database. Int J Infect Dis 153:107769. https:\/\/doi.org\/10.1016\/j.ijid.2024.107769","journal-title":"Int J Infect Dis"},{"key":"5577_CR204","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(24)01867-1","author":"M Naghavi","year":"1990","unstructured":"Naghavi M, Vollset SE, Ikuta KS, Swetschinski LR, Gray AP, Wool EE, Robles Aguilar G, Mestrovic T, Smith G et al (2024) Global burden of bacterial antimicrobial resistance 1990\u20132021: a systematic analysis with forecasts to 2050. Lancet 404(10459):1199-1226. https:\/\/doi.org\/10.1016\/S0140-6736(24)01867-1","journal-title":"Lancet"},{"key":"5577_CR205","doi-asserted-by":"publisher","DOI":"10.1016\/bs.apar.2023.02.001","author":"MS Hossain","year":"2023","unstructured":"Hossain MS, Hatta T, Labony SS, Kwofie KD, Kawada H, Tsuji N, Alim MA (2023) Food and vector-borne parasitic zoonoses: global burden and impacts. Adv Parasitol 120:87-136. https:\/\/doi.org\/10.1016\/bs.apar.2023.02.001","journal-title":"Adv Parasitol"},{"key":"5577_CR206","doi-asserted-by":"publisher","DOI":"10.3390\/jcm13247783","author":"KO Gradel","year":"2024","unstructured":"Gradel KO, Coia JE, Chen M, Nielsen SL, Jensen TG, Moller JK, Dessau RB, Povoa P (2024) Hospital-acquired bloodstream infections in relation to intensive care unit stays during hospitalization\u2014a population-based cohort study. J Clin Med 13(24):7783. https:\/\/doi.org\/10.3390\/jcm13247783","journal-title":"J Clin Med"},{"key":"5577_CR207","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-023-01338-5","author":"MJ Alwazzeh","year":"2015","unstructured":"Alwazzeh MJ, Alnimr A, Al Nassri SA, Alwarthan SM, Alhajri M, AlShehail BM, Almubarak M, Alghamdi NS, Wali HA (2023 ) Microbiological trends and mortality risk factors of central line-associated bloodstream infections in an academic medical center 2015\u20132020. Antimicrob Resist Infect Control 12(1):128. https:\/\/doi.org\/10.1186\/s13756-023-01338-5","journal-title":"Antimicrob Resist Infect Control"},{"key":"5577_CR208","doi-asserted-by":"publisher","DOI":"10.1038\/s41590-020-0648-y","author":"J Rocklov","year":"2020","unstructured":"Rocklov J, Dubrow R (2020) Climate change: an enduring challenge for vector-borne disease prevention and control. Nat Immunol 21(5):479-483. https:\/\/doi.org\/10.1038\/s41590-020-0648-y","journal-title":"Nat Immunol"},{"key":"5577_CR209","doi-asserted-by":"publisher","DOI":"10.3201\/eid1807.101371","author":"M Pastagia","year":"2012","unstructured":"Pastagia M, Kleinman LC, Lacerda de la Cruz EG, Jenkins SG (2012) Predicting risk for death from MRSA bacteremia. Emerg Infect Dis 18(7):1072-1080. https:\/\/doi.org\/10.3201\/eid1807.101371","journal-title":"Emerg Infect Dis"},{"key":"5577_CR210","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2025.1504866","author":"Z Dai","year":"2025","unstructured":"Dai Z, Lan X, Cai M, Liao Y, Zhang J, Ye N, Lu X, Wang J, Xiao Y, Zhang Y, Yao Y, Liang X (2025) Nineteen years retrospective analysis of epidemiology, antifungal resistance and a nomogram model for 30-day mortality in nosocomial candidemia patients. Front Cell Infect Microbiol 15:1504866. https:\/\/doi.org\/10.3389\/fcimb.2025.1504866","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR211","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11071711","author":"O Tsachouridou","year":"2023","unstructured":"Tsachouridou O, Pilalas D, Nanoudis S, Antoniou A, Bakaimi I, Chrysanthidis T, Markakis K, Kassomenaki A, Mantzana P, Protonotariou E, Skoura L, Metallidis S (2023) Mortality due to multidrug-resistant Gram-negative bacteremia in an endemic region: no better than a toss of a coin. Microorganisms 11(7):1711. https:\/\/doi.org\/10.3390\/microorganisms11071711","journal-title":"Microorganisms"},{"key":"5577_CR212","doi-asserted-by":"publisher","DOI":"10.1186\/s12929-023-00926-2","author":"W Fang","year":"2023","unstructured":"Fang W, Wu J, Cheng M, Zhu X, Du M, Chen C, Liao W, Zhi K, Pan W (2023) Diagnosis of invasive fungal infections: challenges and recent developments. J Biomed Sci 30(1):42. https:\/\/doi.org\/10.1186\/s12929-023-00926-2","journal-title":"J Biomed Sci"},{"key":"5577_CR213","doi-asserted-by":"publisher","DOI":"10.1038\/nature12060","author":"S Bhatt","year":"2013","unstructured":"Bhatt S, Gething PW, Brady OJ, Messina JP, Farlow AW, Moyes CL, Drake JM, Brownstein JS, Hoen AG, Sankoh O, Myers MF, George DB, Jaenisch T, Wint GRW, Simmons CP, Scott TW, Farrar JJ, Hay SI (2013) The global distribution and burden of dengue. Nature 496(7446):504-507. https:\/\/doi.org\/10.1038\/nature12060","journal-title":"Nature"},{"key":"5577_CR214","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciw589","author":"JJ Waggoner","year":"2016","unstructured":"Waggoner JJ, Gresh L, Vargas MJ, Ballesteros G, Tellez Y, Soda KJ, Sahoo MK, Nu\u00f1ez A, Balmaseda A, Harris E, Pinsky BA (2016) Viremia and clinical presentation in Nicaraguan patients infected with Zika virus, chikungunya virus, and dengue virus. Clin Infect Dis 63(12):1584-1590. https:\/\/doi.org\/10.1093\/cid\/ciw589","journal-title":"Clin Infect Dis"},{"key":"5577_CR215","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2024.1360586","author":"E Alakunle","year":"2024","unstructured":"Alakunle E, Kolawole D, Diaz-Canova D, Alele F, Adegboye O, Moens U, Okeke MI (2024) A comprehensive review of monkeypox virus and mpox characteristics. Front Cell Infect Microbiol 14:1360586. https:\/\/doi.org\/10.3389\/fcimb.2024.1360586","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR216","doi-asserted-by":"publisher","DOI":"10.7326\/0003-4819-127-4-199708150-00001","author":"DG Maki","year":"1997","unstructured":"Maki DG, Stolz SM, Wheeler S, Mermel LA (1997) Prevention of central venous catheter-related bloodstream infection by use of an antiseptic-impregnated catheter. A randomized, controlled trial. Ann Intern Med 127(4):257-266. https:\/\/doi.org\/10.7326\/0003-4819-127-4-199708150-00001","journal-title":"Ann Intern Med"},{"key":"5577_CR217","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(08)70041-0","author":"JDD Pitout","year":"2008","unstructured":"Pitout JDD, Laupland KB (2008) Extended-spectrum \u03b2-lactamase-producing Enterobacteriaceae: an emerging public-health concern. Lancet Infect Dis 8(3):159-166. https:\/\/doi.org\/10.1016\/S1473-3099(08)70041-0","journal-title":"Lancet Infect Dis"},{"key":"5577_CR218","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciy845","author":"SL Revolinski","year":"2019","unstructured":"Revolinski SL, Munoz-Price LS (2019) Clostridium difficile in immunocompromised hosts: a review of epidemiology, risk factors, treatment, and prevention. Clin Infect Dis 68(12):2144-2153. https:\/\/doi.org\/10.1093\/cid\/ciy845","journal-title":"Clin Infect Dis"},{"key":"5577_CR219","doi-asserted-by":"publisher","unstructured":"Christaki E, Giamarellos-Bourboulis EJ (2014) The complex pathogenesis of bacteremia: from antimicrobial clearance mechanisms to the genetic background of the host. Virulence 5:57\u201365.https:\/\/doi.org\/10.4161\/viru.26514","DOI":"10.4161\/viru.26514"},{"key":"5577_CR220","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-023-08677-z","author":"BM Aiesh","year":"2023","unstructured":"Aiesh BM, Qashou R, Shemmessian G, Swaileh MW, Abutaha SA, Sabateen A, Barqawi AK, AbuTaha A, Zyoud SH (2023) Nosocomial infections in the surgical intensive care unit: an observational retrospective study from a large tertiary hospital in Palestine. BMC Infect Dis 23(1):686. https:\/\/doi.org\/10.1186\/s12879-023-08677-z","journal-title":"BMC Infect Dis"},{"key":"5577_CR221","doi-asserted-by":"publisher","unstructured":"Monegro AF, Muppidi V, Regunath H (2025) Hospital-acquired infections. In: StatPearls. StatPearls Publishing. https:\/\/doi.org\/10.33973\/statpearls","DOI":"10.33973\/statpearls"},{"key":"5577_CR222","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofaf151","author":"H Petit","year":"2025","unstructured":"Petit H, de Tymowski C, Dudoignon E, Liberge M, Donay J-L, Chaussard M, Coutrot M, Cupaciu A, Guillemet L, Deniau B, Pharaboz A, Benyamina M, Denis B, Mellon G, Lafaurie M, Alanio A, Depret F, Bercot B, Camelena F (2025) Epidemiology and outcomes of bloodstream infections in patients in a burns intensive care unit: an 8-year retrospective study. Open Forum Infect Dis 12(4): ofaf151. https:\/\/doi.org\/10.1093\/ofid\/ofaf151","journal-title":"Open Forum Infect Dis"},{"key":"5577_CR223","doi-asserted-by":"publisher","DOI":"10.1007\/s12275-024-00190-5","author":"X Lin","year":"2024","unstructured":"Lin X, Lin C, Li X, Wang Z, Zhang Y, Zhang J, Li L, Xu J (2024) Gut microbiota dysbiosis facilitates susceptibility to bloodstream infection. J Microbiol 62(12):1113-1124. https:\/\/doi.org\/10.1007\/s12275-024-00190-5","journal-title":"J Microbiol"},{"key":"5577_CR224","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2018.0027","author":"V Cepas","year":"2019","unstructured":"Cepas V, Lopez Y, Munoz E, Rolo D, Ardanuy C, Marti S, Xercavins M, Horcajada JP, Bosch J, Soto SM (2019) Relationship between biofilm formation and antimicrobial resistance in Gram-negative bacteria. Microb Drug Resist 25(1):72-79. https:\/\/doi.org\/10.1089\/mdr.2018.0027","journal-title":"Microb Drug Resist"},{"key":"5577_CR225","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199505253322102","author":"K Marsh","year":"1995","unstructured":"Marsh K, Forster D, Waruiru C, Mwangi I, Winstanley P, Marsh V, Newton C, Winstanley P, Warn P, Peshu N, Pasvol G, Snow GRW (1995) Indicators of life-threatening malaria in African children. N Engl J Med 332(21):1399-1404. https:\/\/doi.org\/10.1056\/NEJM199505253322102","journal-title":"N Engl J Med"},{"key":"5577_CR226","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijregi.2023.01.002","author":"A Balkhair","year":"2023","unstructured":"Balkhair A, Al Saadi K, Al Adawi B (2023) Epidemiology and mortality outcome of carbapenem- and colistin-resistant Klebsiella pneumoniae, Escherichia coli, Acinetobacter baumannii, and Pseudomonas aeruginosa bloodstream infections. IJID Regions 8:7:1-5. https:\/\/doi.org\/10.1016\/j.ijregi.2023.01.002","journal-title":"IJID Regions"},{"key":"5577_CR227","doi-asserted-by":"publisher","DOI":"10.53854\/liim-3202-2","author":"SS Adeiza","year":"2024","unstructured":"Adeiza SS, Aminul I (2024) Meta-meta-analysis of the mortality risk associated with MRSA compared to MSSA bacteraemia. Infez Med 32(2):131-137. https:\/\/doi.org\/10.53854\/liim-3202-2","journal-title":"Infez Med"},{"key":"5577_CR228","doi-asserted-by":"publisher","DOI":"10.1186\/s12941-023-00566-2","author":"D Arias Ramos","year":"2023","unstructured":"Arias Ramos D, Alzate JA, Moreno G\u00f3mez GA, Hoyos Pulgar\u00edn JA, Olaya G\u00f3mez JC, Cort\u00e9s Bonilla I et al (2023) Empirical treatment and mortality in bacteremia due to extended-spectrum \u03b2-lactamase producing Enterobacterales (ES\u03b2L-E), a retrospective cross-sectional study in a tertiary referral hospital from Colombia. Ann Clin Microbiol Antimicrob 22(1):13. https:\/\/doi.org\/10.1186\/s12941-023-00566-2","journal-title":"Ann Clin Microbiol Antimicrob"},{"key":"5577_CR229","doi-asserted-by":"publisher","DOI":"10.1016\/j.infpip.2023.100298","author":"V Anton-Vazquez","year":"2023","unstructured":"Anton-Vazquez V, Evans TJ, Fernando S, Somasunderam D, David K, Melzer M, Hawkins L, Morris-Jones S, Arias M, Drazho B, Dall\u2019Antonia M, Planche T (2023) Clinical, microbiological characteristics and predictors of mortality in patients with carbapenemase-producing Enterobacterales bloodstream infections: a multicentre study. Infect Prev Pract 5(3):100298. https:\/\/doi.org\/10.1016\/j.infpip.2023.100298","journal-title":"Infect Prev Pract"},{"key":"5577_CR230","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.06268-11","author":"ZA Qureshi","year":"2012","unstructured":"Qureshi ZA, Paterson DL, Potoski BA, Kilayko MC, Sandovsky G, Sordillo E, Polsky B, Adams-Haduch JM, Doi Y (2012) Treatment outcome of bacteremia due to KPC-producing Klebsiella pneumoniae: superiority of combination antimicrobial regimens. Antimicrob Agents Chemother 56(4):2108-2113. https:\/\/doi.org\/10.1128\/AAC.06268-11","journal-title":"Antimicrob Agents Chemother"},{"key":"5577_CR231","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2010.02.001","author":"M Nguyen","year":"2010","unstructured":"Nguyen M, Eschenauer GA, Bryan M, O\u2019Neil K, Furuya EY, Della-Latta P, Kubin CJ (2010) Carbapenem-resistant Klebsiella pneumoniae bacteremia: factors correlated with clinical and microbiologic outcomes. Diagn Microbiol Infect Dis 67(2):180-184. https:\/\/doi.org\/10.1016\/j.diagmicrobio.2010.02.001","journal-title":"Diagn Microbiol Infect Dis"},{"key":"5577_CR232","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02166-13","author":"GL Daikos","year":"2014","unstructured":"Daikos GL, Tsaousi S, Tzouvelekis LS, Anyfantis I, Psichogiou M, Argyropoulou A, Stefanou I, Sypsa V, Miriagou V, Nepka M, Georgiadou S, Markogiannakis A, Goukos D, Skoutelis A (2014) Carbapenemase-producing Klebsiella pneumoniae bloodstream infections: lowering mortality by antibiotic combination schemes and the role of carbapenems. Antimicrob Agents Chemother 58(4):2322-2328. https:\/\/doi.org\/10.1128\/AAC.02166-13","journal-title":"Antimicrob Agents Chemother"},{"key":"5577_CR233","doi-asserted-by":"publisher","DOI":"10.1186\/s12941-017-0191-3","author":"L Xu","year":"2017","unstructured":"Xu L, Sun X, Ma X (2017) Systematic review and meta-analysis of mortality of patients infected with carbapenem-resistant Klebsiella pneumoniae. Ann Clin Microbiol Antimicrob 16(1):18. https:\/\/doi.org\/10.1186\/s12941-017-0191-3","journal-title":"Ann Clin Microbiol Antimicrob"},{"key":"5577_CR234","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01882-17","author":"Y Zhang","year":"2018","unstructured":"Zhang Y, Wang Q, Yin Y, Chen H, Jin L, Gu B, Xie L, Yang C, Ma X, Li H, Li W, Zhang X, Liao K, Man S, Wang S, Wen H, Li B, Guo Z, Tian J, Pei F, Liu L, Zhang L, Zou C, Hu T, Cai J, Yang H, Huang J, Jia X, Huang W, Cao B, Wang H (2018) Epidemiology of carbapenem-resistant Enterobacteriaceae infections: report from the China CRE Network. Antimicrob Agents Chemother 62(2):e01882-17. https:\/\/doi.org\/10.1128\/AAC.01882-17","journal-title":"Antimicrob Agents Chemother"},{"key":"5577_CR235","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2019.05.017","author":"A Russo","year":"2019","unstructured":"Russo A, Bassetti M, Ceccarelli G, Carannante N, Losito AR, Bartoletti M, Corcione S, Granata G, Santoro A, Giacobbe DR, Peghin M, Vena A, Amadori F, Segala FV, Giannella M, Di Caprio G, Menichetti F, Del Bono V, Mussini C, Petrosillo N, Venditti M (2019) Bloodstream infections caused by carbapenem-resistant Acinetobacter baumannii: clinical features, therapy and outcome from a multicenter study. J Infect 79(2):130-138. https:\/\/doi.org\/10.1016\/j.jinf.2019.05.017","journal-title":"J Infect"},{"key":"5577_CR236","doi-asserted-by":"publisher","DOI":"10.1007\/s40121-021-00408-8","author":"AE Maraolo","year":"1952","unstructured":"Maraolo AE, Corcione S, Grossi A, Signori A, Alicino C, Hussein K, Trecarichi EM, Viale P, Timsit JF, Veeraraghavan B, Villegas MV, Rahav G, Daikos GL, Vardakas KZ, Roilides E, Uhlemann AC, Ghafur AK, Mornese Pinna S, Bassetti M, Kohler PP, Giacobbe DR (2021) The impact of carbapenem resistance on mortality in patients with Klebsiella pneumoniae bloodstream infection: an individual patient data meta-analysis of 1952 patients. Infect Dis Ther 10(1):541-558. https:\/\/doi.org\/10.1007\/s40121-021-00408-8","journal-title":"Infect Dis Ther"},{"key":"5577_CR237","doi-asserted-by":"publisher","DOI":"10.3390\/idr15050055","author":"J Boral","year":"2023","unstructured":"Boral J, P\u0131narl\u0131k F, Ekinci G, Can F, Erg\u00f6n\u00fcl \u00d6 (2023) Does emerging carbapenem resistance in Acinetobacter baumannii increase the case fatality rate? Systematic review and meta-analysis. Infect Dis Rep 15(5):564-575. https:\/\/doi.org\/10.3390\/idr15050055","journal-title":"Infect Dis Rep"},{"key":"5577_CR238","doi-asserted-by":"publisher","DOI":"10.1080\/14787210.2024.2307912","author":"N Gupta","year":"2024","unstructured":"Gupta N, Boodman C, Prayag P, Manesh A, Kumar TP (2024) Ceftazidime-avibactam and aztreonam combination for carbapenem-resistant Enterobacterales bloodstream infections with presumed metallo-\u03b2-lactamase production: a systematic review and meta-analysis. Expert Rev Anti Infect Ther 22(4):203-209. https:\/\/doi.org\/10.1080\/14787210.2024.2307912","journal-title":"Expert Rev Anti Infect Ther"},{"key":"5577_CR239","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2025.1734801","author":"H Kong","year":"2026","unstructured":"Kong H, Liu Y, Wang Y, Yang L, Chen Q, Li Y, Dong Z, Hu Z, Chai Y, Wang X, Yan H (2026) Risk factors, and outcomes of patients with carbapenem-resistant Enterobacterales bloodstream infection: an eight-year case-case-control study. Front Cell Infect Microbiol 15:1734801. https:\/\/doi.org\/10.3389\/fcimb.2025.1734801","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR240","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofaf729","author":"G Perez-Lazo","year":"2020","unstructured":"Perez-Lazo G, Sandoval-Ahumada R, Tairo-Cerron C, Ballena-L\u00f3pez J, Soto-Febres F, Loyola S (2020) Thirty-day mortality associated with carbapenemase-producing Enterobacterales bloodstream infections at a referral hospital in Peru, 2020\u20132023. Open Forum Infect Dis 12(12):ofaf729. https:\/\/doi.org\/10.1093\/ofid\/ofaf729","journal-title":"Open Forum Infect Dis"},{"key":"5577_CR241","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11115-x","author":"LG de Araujo","year":"2025","unstructured":"de Araujo LG, Cede\u00f1o K, Bomfim AP, Silva MO, Mendes AV, Barberino MG, Gouveia EL, Bahia FMM, dos Reis MG, Reis JN (2025) Carbapenem-resistant Enterobacterales bloodstream infections related to death in two Brazilian tertiary hospitals. BMC Infect Dis 25(1):725. https:\/\/doi.org\/10.1186\/s12879-025-11115-x","journal-title":"BMC Infect Dis"},{"key":"5577_CR242","doi-asserted-by":"publisher","DOI":"10.3390\/diagnostics15232957","author":"BM Alshehail","year":"2025","unstructured":"Alshehail BM, Alwezzeh MJ, Almalki HH, Alnimr A, Wali H, Al Jamea Z, Al Rashed AS, Alhajri M, Abdulaal HA, Alanbari LA, Alsowaida YS, Alamri A, Almuthen S, Azaiez F, Alzahrani S, Zakari N, Asiri J, Alanazi W, Bakkar M, AlBahrani S (2025) Recurrence, readmission, and key mortality predictors in patients with carbapenem-resistant Enterobacterales infections. Diagnostics (Basel) 15(23): 2957. https:\/\/doi.org\/10.3390\/diagnostics15232957","journal-title":"Diagnostics (Basel)"},{"key":"5577_CR243","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2010.10.013","author":"EA Neuner","year":"2011","unstructured":"Neuner EA, Yeh JY, Hall GS, Sekeres J, Endimiani A, Bonomo RA, Shrestha NK, Fraser TG, van Duin D (2011) Treatment and outcomes in carbapenem-resistant Klebsiella pneumoniae bloodstream infections. Diagn Microbiol Infect Dis 69(4):357-362. https:\/\/doi.org\/10.1016\/j.diagmicrobio.2010.10.013","journal-title":"Diagn Microbiol Infect Dis"},{"key":"5577_CR244","doi-asserted-by":"publisher","DOI":"10.3205\/dgkh000290","author":"M Exner","year":"2017","unstructured":"Exner M, Bhattacharya S, Christiansen B, Gebel J, Goroncy-Bermes P, Hartemann P, Heeg P, Ilschner C, Kramer A, Larson E, Merkens W, Mielke M, Oltmanns P, Ross B, Rotter M, Schmithausen RM, Sonntag HG, Trautmann M (2017) Antibiotic resistance: what is so special about multidrug-resistant Gram-negative bacteria? GMS Hyg Infect Control 12:Doc05. https:\/\/doi.org\/10.3205\/dgkh000290","journal-title":"GMS Hyg Infect Control"},{"key":"5577_CR245","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-018-3263-x","author":"M Xu","year":"2018","unstructured":"Xu M, Fu Y, Kong H, Chen X, Chen Y, Li L, Yang Q (2018) Bloodstream infections caused by Klebsiella pneumoniae: prevalence of blaKPC, virulence factors and their impacts on clinical outcome. BMC Infect Dis 18: 358. https:\/\/doi.org\/10.1186\/s12879-018-3263-x","journal-title":"BMC Infect Dis"},{"key":"5577_CR246","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/cis588","author":"M Tumbarello","year":"2012","unstructured":"Tumbarello M, Viale P, Viscoli C, Trecarichi EM, Tumietto F, Marchese A, Spanu T, Ambretti S, Ginocchio F, Cristini F, Losito AR, Tedeschi S, Cauda R, Bassetti M (2012) Predictors of mortality in bloodstream infections caused by Klebsiella pneumoniae carbapenemase-producing K. pneumoniae: importance of combination therapy. Clin Infect Dis 55(7):943-950. https:\/\/doi.org\/10.1093\/cid\/cis588","journal-title":"Clin Infect Dis"},{"key":"5577_CR247","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2017.0173","author":"H Guducuoglu","year":"2018","unstructured":"Guducuoglu H, Gursoy NC, Yakupogullari Y, Parlak M, Karasin G, Sunnetcioglu M, Otlu B (2018) Hospital outbreak of a colistin-resistant, NDM-1- and OXA-48-producing Klebsiella pneumoniae: high mortality from pandrug resistance. Microb Drug Resist 24(7):966-972. https:\/\/doi.org\/10.1089\/mdr.2017.0173","journal-title":"Microb Drug Resist"},{"key":"5577_CR248","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(19)32989-7","author":"KE Rudd","year":"1990","unstructured":"Rudd KE, Johnson SC, Agesa KM, Shackelford KA, Tsoi D, Kievlan DR, Colombara DV, Ikuta KS, Kissoon N, Finfer S, Fleischmann-Struzek C, Machado FR, Reinhart KK, Rowan K, Seymour CW, Watson RS, West TE, Marinho F, Hay SI, Lozano R, Lopez AD, Angus DC, Murray CJL, Naghavi M (2020) Global, regional, and national sepsis incidence and mortality, 1990\u20132017: analysis for the Global Burden of Disease Study. Lancet 395(10219):200-211. https:\/\/doi.org\/10.1016\/S0140-6736(19)32989-7","journal-title":"Lancet"},{"key":"5577_CR249","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2019.05.004","author":"A Balkhair","year":"2019","unstructured":"Balkhair A, Al-Muharrmi Z, Al\u2019Adawi B, Al Busaidi I, Taher HB, Al-Siyabi T, Al Amin M, Hassan KS (2019) Prevalence and 30-day all-cause mortality of carbapenem- and colistin-resistant bacteraemia caused by Acinetobacter baumannii, Pseudomonas aeruginosa, and Klebsiella pneumoniae: description of a decade-long trend. Int J Infect Dis 85:10-15. https:\/\/doi.org\/10.1016\/j.ijid.2019.05.004","journal-title":"Int J Infect Dis"},{"key":"5577_CR250","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-023-51118-9","volume":"14","author":"MS Baek","year":"2024","unstructured":"Baek MS, Kim JH, Park JH, Kim TW, Jung HI, Kwon YS (2024) Comparison of mortality rates in patients with carbapenem-resistant Enterobacterales bacteremia according to carbapenemase production: a multicenter propensity-score matched study. Sci Rep 14:597.14(1):597. https:\/\/doi.org\/10.1038\/s41598-023-51118-9","journal-title":"Sci Rep"},{"key":"5577_CR251","doi-asserted-by":"publisher","DOI":"10.1038\/d41586-024-03033-w","author":"M Naddaf","year":"2024","unstructured":"Naddaf M (2024) 40 million deaths by 2050: toll of drug-resistant infections to rise by 70%. Nature 633(8031):747-748. https:\/\/doi.org\/10.1038\/d41586-024-03033-w","journal-title":"Nature"},{"key":"5577_CR252","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2023.09.001","author":"N Hassoun-Kheir","year":"2024","unstructured":"Hassoun-Kheir N, Guedes M, Ngo Nsoga MT, Argante L, Arieti F et al (2024) A systematic review on the excess health risk of antibiotic-resistant bloodstream infections for six key pathogens in Europe. Clin Microbiol Infect 30(Suppl 1):S14-S25. https:\/\/doi.org\/10.1016\/j.cmi.2023.09.001","journal-title":"Clin Microbiol Infect"},{"key":"5577_CR253","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-020-1016-z","author":"X He","year":"2020","unstructured":"He X, Lau EHY, Wu P, Deng X, Wang J, Hao X, Lau YC et al (2020) Author Correction:Temporal dynamics in viral shedding and transmissibility of COVID-19. Nat Med 26(9):1491-1493. https:\/\/doi.org\/10.1038\/s41591-020-1016-z","journal-title":"Nat Med"},{"key":"5577_CR254","doi-asserted-by":"publisher","DOI":"10.1016\/j.mcpro.2021.100134","author":"PM Vanderboom","year":"2021","unstructured":"Vanderboom PM, Mun DG, Madugundu AK, Mangalaparthi KK, Saraswat M, Garapati K, Chakraborty R, Ebihara H, Sun J, Pandey A (2021) Proteomic signature of host response to SARS-CoV-2 infection in the nasopharynx. Mol Cell Proteomics 20:100134 https:\/\/doi.org\/10.1016\/j.mcpro.2021.100134","journal-title":"Mol Cell Proteomics"},{"key":"5577_CR255","doi-asserted-by":"publisher","DOI":"10.1001\/jamanetworkopen.2024.0383","author":"SS Cabler","year":"2024","unstructured":"Cabler SS, Storch GA, Weinberg JB, Walton AH, Brengel-Pesce K, Aldewereld Z et al (2024) Viral DNAemia and DNA Virus Seropositivity and Mortality in Pediatric Sepsis. JAMA Netw Open 7(2):e240383. https:\/\/doi.org\/10.1001\/jamanetworkopen.2024.0383","journal-title":"JAMA Netw Open"},{"key":"5577_CR256","doi-asserted-by":"publisher","DOI":"10.3390\/biom14010097","author":"L Bernardi","year":"2024","unstructured":"Bernardi L, Bossu G, Dal Canto G, Gianni G, Esposito S (2024) Biomarkers for serious bacterial infections in febrile children. Biomolecules 14(1):97. https:\/\/doi.org\/10.3390\/biom14010097","journal-title":"Biomolecules"},{"key":"5577_CR257","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.AID-0022-2014","author":"SB Halstead","year":"2014","unstructured":"Halstead SB (2014) Dengue antibody-dependent enhancement: knowns and unknowns. Microbiol Spectr 2 (6): 1-18. https:\/\/doi.org\/10.1128\/microbiolspec.AID-0022-2014","journal-title":"Microbiol Spectr"},{"key":"5577_CR258","doi-asserted-by":"publisher","DOI":"10.1002\/rmv.1978","author":"R Mehta","year":"2018","unstructured":"Mehta R, Gerardin P, de Brito CAA, Soares CN, Ferreira MLB, Solomon T (2018) The neurological complications of chikungunya virus: a systematic review. Rev Med Virol 28(3):e1978. https:\/\/doi.org\/10.1002\/rmv.1978","journal-title":"Rev Med Virol"},{"key":"5577_CR259","doi-asserted-by":"publisher","DOI":"10.1080\/21505594.2025.2492371","author":"A Li","year":"2025","unstructured":"Li A, Yi Z, Ma C, Sun B, Zhao L, Cheng X, Hui L, Xia Y (2025) Innate immune recognition in hepatitis B virus infection. Virulence 16(1):2492371. https:\/\/doi.org\/10.1080\/21505594.2025.2492371","journal-title":"Virulence"},{"key":"5577_CR260","doi-asserted-by":"publisher","DOI":"10.1126\/scisignal.adg5470","author":"L Carrau","year":"2023","unstructured":"Carrau L, Frere JJ, Golynker I, Fajardo A, Rivera CF, Horiuchi S, Roonprapunt T, Minkoff JM, Blanco-Melo D, TenOever B (2023) Delayed engagement of host defenses enables SARS-CoV-2 viremia and productive infection of distal organs in the hamster model of COVID-19. Sci Signal 16(789):eadg5470. https:\/\/doi.org\/10.1126\/scisignal.adg5470","journal-title":"Sci Signal"},{"key":"5577_CR261","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00116-13","author":"T Lion","year":"2014","unstructured":"Lion T (2014) Adenovirus infections in immunocompetent and immunocompromised patients. Clin Microbiol Rev 27(3):441-462. https:\/\/doi.org\/10.1128\/CMR.00116-13","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR262","doi-asserted-by":"publisher","DOI":"10.1016\/j.hoc.2010.11.011","author":"P Ljungman","year":"2011","unstructured":"Ljungman P, Hakki M, Boeckh M (2011) Cytomegalovirus in hematopoietic stem cell transplant recipients. Hematol Oncol Clin North Am 25(1):151\u2013169. https:\/\/doi.org\/10.1016\/j.hoc.2010.11.011","journal-title":"Hematol Oncol Clin North Am"},{"key":"5577_CR263","doi-asserted-by":"publisher","DOI":"10.1111\/j.1399-3062.2010.00564.x","author":"C Kullberg-Lindh","year":"2011","unstructured":"Kullberg-Lindh C, Mellgren K, Friman V, Fasth A, Ascher H, Nilsson S, Lindh M (2011) Opportunistic virus DNA levels after pediatric stem cell transplantation: serostatus matching, anti-thymocyte globulin, and total body irradiation are additive risk factors. Transplant Infect Dis 13(2):122-130. https:\/\/doi.org\/10.1111\/j.1399-3062.2010.00564.x","journal-title":"Transplant Infect Dis"},{"key":"5577_CR264","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbmt.2012.05.012","author":"DM Zerr","year":"2012","unstructured":"Zerr DM, Boeckh M, Delaney C, Martin PJ, Xie H, Adler AL, Huang ML, Corey L, Leisenring WM (2012) HHV-6 reactivation and associated sequelae after hematopoietic cell transplantation. Biol Blood Marrow Transplant 18(11):1700-1708. https:\/\/doi.org\/10.1016\/j.bbmt.2012.05.012","journal-title":"Biol Blood Marrow Transplant"},{"key":"5577_CR265","doi-asserted-by":"publisher","DOI":"10.1186\/1756-8722-6-94","author":"R Lin","year":"2013","unstructured":"Lin R, Liu Q (2013) Diagnosis and treatment of viral diseases in recipients of allogeneic hematopoietic stem cell transplantation. J Hematol Oncol 6:94. https:\/\/doi.org\/10.1186\/1756-8722-6-94","journal-title":"J Hematol Oncol"},{"key":"5577_CR266","doi-asserted-by":"publisher","DOI":"10.1016\/j.jcv.2013.01.003","author":"K Gohring","year":"2013","unstructured":"Gohring K, Wolf D, Bethge W, Mikeler E, Faul C, Vogel W, V\u00f6hringer MC, Jahn G, Hamprecht K (2013) Dynamics of coexisting HCMV-UL97 and UL54 drug-resistance associated mutations in patients after haematopoietic cell transplantation. J Clin Virol 57(1):43-49. https:\/\/doi.org\/10.1016\/j.jcv.2013.01.003","journal-title":"J Clin Virol"},{"key":"5577_CR267","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00611-13","author":"R Hall Sedlak","year":"2013","unstructured":"Hall Sedlak R, Castor J, Butler-Wu SM, Chan E, Cook L, Limaye AP, Jerome KR (2013) Rapid detection of human cytomegalovirus UL97 and UL54 mutations directly from patient samples. J Clin Microbiol 51(7):2354-2359. https:\/\/doi.org\/10.1128\/JCM.00611-13","journal-title":"J Clin Microbiol"},{"key":"5577_CR268","doi-asserted-by":"publisher","DOI":"10.1002\/rmv.1862","author":"L Dupont","year":"2016","unstructured":"Dupont L, Reeves MB (2016) Cytomegalovirus latency and reactivation: recent insights into an age old problem. Rev Med Virol 26(2):75-89. https:\/\/doi.org\/10.1002\/rmv.1862","journal-title":"Rev Med Virol"},{"key":"5577_CR269","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofx029","author":"P Lachance","year":"2017","unstructured":"Lachance P, Chen J, Featherstone R, Sligl WI (2017) Association between cytomegalovirus reactivation and clinical outcomes in immunocompetent critically ill patients: a systematic review and meta-analysis. Open Forum Infect Dis 4(2):ofx029. https:\/\/doi.org\/10.1093\/ofid\/ofx029","journal-title":"Open Forum Infect Dis"},{"key":"5577_CR270","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciaa1054","author":"CA Hogan","year":"2021","unstructured":"Hogan CA, Stevens BA, Sahoo MK, Huang C, Garamani N, Gombar S, Yamamoto F, Murugesan K, Kurzer J, Zehnder J, Pinsky BA (2021) High frequency of SARS-CoV-2 RNAemia and association with severe disease. Clin Infect Dis 72(9):e291-e295. https:\/\/doi.org\/10.1093\/cid\/ciaa1054","journal-title":"Clin Infect Dis"},{"key":"5577_CR271","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciab394","author":"N Ram-Mohan","year":"2022","unstructured":"Ram-Mohan N, Kim D, Zudock EJ, Hashemi MM, Tjandra KC, Rogers AJ, Blish CA, Nadeau KC, Newberry JA, Quinn JV, O\u2019Hara R, Ashley E, Nguyen H, Jiang L, Hung P, Blomkalns AL, Yang S (2022) SARS-CoV-2 RNAemia predicts clinical deterioration and extrapulmonary complications from COVID-19. Clin Infect Dis 74(2):218-226. https:\/\/doi.org\/10.1093\/cid\/ciab394","journal-title":"Clin Infect Dis"},{"key":"5577_CR272","doi-asserted-by":"publisher","DOI":"10.1186\/s40779-024-00581-0","author":"JQ Xu","year":"2024","unstructured":"Xu JQ, Zhang WY, Fu JJ, Fang XZ, Gao CG, Li C, Yao L, Li QL, Yang XB, Ren LH, Shu HQ, Peng K, Wu Y, Zhang DY, Qiu Y, Zhou X, Yao YM, Shang Y (2024) Viral sepsis: diagnosis, clinical features, pathogenesis, and clinical considerations. Mil Med Res 11(1):78. https:\/\/doi.org\/10.1186\/s40779-024-00581-0","journal-title":"Mil Med Res"},{"key":"5577_CR273","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens13010089","author":"B Dyck","year":"2024","unstructured":"Dyck B, Unterberg M, Adamzik M, Koos B (2024) The impact of pathogens on sepsis prevalence and outcome. Pathogens (Basel) 13(1):89. https:\/\/doi.org\/10.3390\/pathogens13010089","journal-title":"Pathogens (Basel)"},{"key":"5577_CR274","doi-asserted-by":"publisher","DOI":"10.1016\/j.lanmic.2024.100967","author":"K Hagman","year":"2025","unstructured":"Hagman K, Postigo T, Diez-Castro D, Ursing J, Bermejo-Martin JF, de la Fuente A, Tedim AP (2025) Prevalence and clinical relevance of viraemia in viral respiratory tract infections: a systematic review. Lancet Microbe 6(2):100967. https:\/\/doi.org\/10.1016\/j.lanmic.2024.100967","journal-title":"Lancet Microbe"},{"key":"5577_CR275","doi-asserted-by":"publisher","DOI":"10.1007\/s40121-025-01159-6","author":"T Schlaeffer-Yosef","year":"2025","unstructured":"Schlaeffer-Yosef T, Nesher L (2025) Tackling CMV in transplant recipients: past, present, and future. Infect Dis Ther 14(6):1183-1200. https:\/\/doi.org\/10.1007\/s40121-025-01159-6","journal-title":"Infect Dis Ther"},{"key":"5577_CR276","doi-asserted-by":"publisher","DOI":"10.1016\/j.blre.2025.101352","author":"N Ullah","year":"2026","unstructured":"Ullah N, Muccio M, Bartalucci C, Balletto E, Sepulcri C, Cerchiaro M, Bassetti M, Mikulska M (2026) Adenovirus infection in adult allogeneic hematopoietic stem cell transplant recipients: systematic review and meta-analysis. Blood Rev 75:101352 https:\/\/doi.org\/10.1016\/j.blre.2025.101352","journal-title":"Blood Rev"},{"key":"5577_CR277","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01709-16","author":"MS Hammer","year":"2014","unstructured":"Thaden JT, Li Y, Ruffin F, Maskarinec SA, Hill-Rorie JM, Wanda LC, Reed SD, Fowler VG (2017) Increased costs associated with bloodstream infections caused by multidrug-resistant Gram-negative bacteria are due primarily to patients with hospital-acquired infections. Antimicrob Agents Chemother 61:e01709-16. https:\/\/doi.org\/10.1128\/AAC.01709-16","journal-title":"Am J Infect Dis"},{"key":"5577_CR278","doi-asserted-by":"publisher","DOI":"10.1002\/hep4.1480","author":"TJ Liang","year":"2013","unstructured":"Do A, Reau NS (2020) Chronic viral hepatitis: current management and future directions. Hepatol Commun 4:329\u2013341. https:\/\/doi.org\/10.1002\/hep4.1480","journal-title":"Gastroenterology"},{"key":"5577_CR279","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijid.2024.107265","author":"M Colaneri","year":"2024","unstructured":"Colaneri M, Fama F, Fassio F, Holmes D, Scaglione G, Mariani C, Galli L, Lai A, Antinori S, Gori A, Riva A, Schiavini M (2024) Impact of early antiviral therapy on SARS-CoV-2 clearance time in high-risk COVID-19 subjects: a propensity score matching study. Int J Infect Dis 149:107265. https:\/\/doi.org\/10.1016\/j.ijid.2024.107265","journal-title":"Int J Infect Dis"},{"key":"5577_CR280","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbmt.2013.07.015","author":"C Sukdolak","year":"2013","unstructured":"Sukdolak C, Tischer S, Dieks D, Figueiredo C, Goudeva L, Heuft HG, Verboom M, Immenschuh S, Heim A, Borchers S, Mischak-Weissinger E, Blasczyk R, Maecker-Kolhoff B, Eiz-Vesper B (2013) CMV-, EBV- and ADV-specific T cell immunity: screening and monitoring of potential third-party donors to improve post-transplantation outcome. Biol Blood Marrow Transplant 19(10):1480-1492. https:\/\/doi.org\/10.1016\/j.bbmt.2013.07.015","journal-title":"Biol Blood Marrow Transplant"},{"key":"5577_CR281","doi-asserted-by":"publisher","DOI":"10.1038\/bmt.2013.96","author":"L Rasche","year":"2014","unstructured":"Rasche L, Kapp M, Einsele H, Mielke S (2014) EBV-induced post transplant lymphoproliferative disorders: a persisting challenge in allogeneic hematopoetic SCT. Bone Marrow Transplant 49(2):163-167. https:\/\/doi.org\/10.1038\/bmt.2013.96","journal-title":"Bone Marrow Transplant"},{"key":"5577_CR282","doi-asserted-by":"publisher","DOI":"10.1111\/ctr.13527","author":"DF Florescu","year":"2019","unstructured":"Florescu DF, Schaenman JM (2019) Adenovirus in solid organ transplant recipients: guidelines from the American Society of Transplantation Infectious Diseases Community of Practice. Clin Transplant 33(9):e13527. https:\/\/doi.org\/10.1111\/ctr.13527","journal-title":"Clin Transplant"},{"key":"5577_CR283","doi-asserted-by":"publisher","DOI":"10.1007\/s00134-015-4066-9","author":"L Papazian","year":"2016","unstructured":"Papazian L, Hraiech S, Lehingue S, Roch A, Chiche L, Wiramus S, Forel JM (2016) Cytomegalovirus reactivation in ICU patients. Intensive Care Med 42(1):28\u201337. https:\/\/doi.org\/10.1007\/s00134-015-4066-9","journal-title":"Intensive Care Med"},{"key":"5577_CR284","doi-asserted-by":"publisher","DOI":"10.1186\/s13613-016-0207-8","author":"A Al-Omari","year":"2016","unstructured":"Al-Omari A, Aljamaan F, Alhazzani W, Salih S, Arabi Y (2016) Cytomegalovirus infection in immunocompetent critically ill adults: literature review. Ann Intensive Care 6(1):110. https:\/\/doi.org\/10.1186\/s13613-016-0207-8","journal-title":"Ann Intensive Care"},{"key":"5577_CR285","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00018-16","author":"TJ Gardner","year":"2016","unstructured":"Gardner TJ, Tortorella D (2016) Virion glycoprotein-mediated immune evasion by human cytomegalovirus: a sticky virus makes a slick getaway. Microbiol Mol Biol Rev 80(3):663-677. https:\/\/doi.org\/10.1128\/MMBR.00018-16","journal-title":"Microbiol Mol Biol Rev"},{"key":"5577_CR286","doi-asserted-by":"publisher","DOI":"10.1186\/s13054-020-03398-0","author":"JF Bermejo-Martin","year":"2020","unstructured":"Bermejo-Martin JF, Gonz\u00e1lez-Rivera M, Almansa R, Micheloud D, Tedim AP, Dom\u00ednguez-Gil M et al (2020) Viral RNA load in plasma is associated with critical illness and a dysregulated host response in COVID-19. Crit Care 24(1):691. https:\/\/doi.org\/10.1186\/s13054-020-03398-0","journal-title":"Crit Care"},{"key":"5577_CR287","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-23494-1","author":"C Gutmann","year":"2021","unstructured":"Gutmann C, Takov K, Burnap SA, Singh B, Ali H, Theofilatos K, Reed E, Hasman M et al (2021) SARS-CoV-2 RNAemia and proteomic trajectories inform prognostication in COVID-19 patients admitted to intensive care. Nat Commun 12(1):3406. https:\/\/doi.org\/10.1038\/s41467-021-23494-1","journal-title":"Nat Commun"},{"key":"5577_CR288","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2025.1556547","author":"L Ma","year":"2025","unstructured":"Ma L, Li Y, Xing H (2025) Virological response and predictive factors for antiviral treatment in chronic HBV-related liver disease with low ALT and high HBV DNA. Front Immunol 16:1556547. https:\/\/doi.org\/10.3389\/fimmu.2025.1556547","journal-title":"Front Immunol"},{"key":"5577_CR289","doi-asserted-by":"publisher","DOI":"10.7759\/cureus.79766","author":"RS Shailja","year":"2025","unstructured":"Shailja RS, Rungtam S, Jeet A, Jain A (2025) Sustained virological response after direct-acting antiviral therapy in hepatitis C virus-infected individuals with and without decompensated liver cirrhosis: a one-year follow-up study. Cureus 17(2):e79766. https:\/\/doi.org\/10.7759\/cureus.79766","journal-title":"Cureus"},{"key":"5577_CR290","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiad520","author":"T Gilada","year":"2024","unstructured":"Gilada T, Ulrich AK, Wang Y, Lama JR, Alfaro R et al (2024) Viral load dynamics in plasma and semen when antiretroviral therapy is initiated during early HIV-1 infection. J Infect Dis 229(4):1141-1146. https:\/\/doi.org\/10.1093\/infdis\/jiad520","journal-title":"J Infect Dis"},{"key":"5577_CR291","doi-asserted-by":"publisher","DOI":"10.1080\/14787210.2023.2279719","author":"L Gan","year":"2023","unstructured":"Gan L, Xie X, Fu Y, Yang X, Ma S, Kong L, Song C, Song Y, Ren T, Long H (2023) Comparison of dolutegravir+lamivudine and bictegravir\/emtricitabine\/tenofovir alafenamide in antiretroviral therapy-na\u00efve patients infected with HIV: preliminary results from clinical practice. Expert Rev Anti Infect Ther 22(10):877-884. https:\/\/doi.org\/10.1080\/14787210.2023.2279719","journal-title":"Expert Rev Anti Infect Ther"},{"key":"5577_CR292","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S477815","author":"K Li","year":"2024","unstructured":"Li K, Yang X, Li L, Zhi L (2024) Candidaemia: a 9-year retrospective analysis of epidemiology and antimicrobial susceptibility in tertiary care hospitals in Western China. Infect Drug Resist 17:3891-3900. https:\/\/doi.org\/10.2147\/IDR.S477815","journal-title":"Infect Drug Resist"},{"key":"5577_CR293","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-019-0534-2","author":"Z Xiao","year":"2011","unstructured":"Xiao Z, Wang Q, Zhu F, An Y, Wang J, Zhang W, Zhang H, Wu Y, Gao L (2019) Epidemiology, species distribution, antifungal susceptibility and mortality risk factors of candidemia among critically ill patients: a retrospective study from 2011 to 2017 in a teaching hospital in China. Antimicrob Resist Infect Control 8:89. https:\/\/doi.org\/10.1186\/s13756-019-0534-2","journal-title":"Antimicrob Resist Infect Control"},{"key":"5577_CR294","doi-asserted-by":"publisher","DOI":"10.3390\/jof10030193","author":"EJ Won","year":"2019","unstructured":"Won EJ, Sung H, Kim M-N (2024) Changing epidemiology of clinical isolates of Candida species during the Coronavirus Disease 2019 Pandemic: data analysis from a Korean tertiary care hospital for 6 years (2017\u20132022). J Fungi 10(3): 193. https:\/\/doi.org\/10.3390\/jof10030193","journal-title":"J Fungi"},{"key":"5577_CR295","doi-asserted-by":"publisher","DOI":"10.3390\/jof9101012","author":"I Franconi","year":"2015","unstructured":"Franconi I, Rizzato C, Tavanti A, Falcone M, Lupetti A (2023) Paradigm shift: Candida parapsilosis sensu stricto as the most prevalent Candida species isolated from bloodstream infections with increasing azole-non-susceptibility rates: trends from 2015\u20132022 survey. J Fungi 9(10):1012. https:\/\/doi.org\/10.3390\/jof9101012","journal-title":"J Fungi"},{"key":"5577_CR296","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2015.06.010","author":"BH Tan","year":"2015","unstructured":"Tan BH, Chakrabarti A, Li RY, Patel AK, Watcharananan SP et al (2015) Incidence and species distribution of candidaemia in Asia: a laboratory-based surveillance study. Clin Microbiol Infect 21(10):946-953. https:\/\/doi.org\/10.1016\/j.cmi.2015.06.010","journal-title":"Clin Microbiol Infect"},{"key":"5577_CR297","doi-asserted-by":"publisher","DOI":"10.3390\/jof10040268","author":"JM Araujo","year":"2024","unstructured":"Araujo JM, de Almeida Junior JN, Magri MMC, Costa SF, Guimaraes T (2024) Epidemiological assessment and risk factors for mortality of bloodstream infections by Candida sp. and the impact of the COVID-19 pandemic era. J Fungi 10(4):268. https:\/\/doi.org\/10.3390\/jof10040268","journal-title":"J Fungi"},{"key":"5577_CR298","doi-asserted-by":"publisher","DOI":"10.3201\/eid2907.230540","author":"K Benedict","year":"2017","unstructured":"Benedict K, Forsberg K, Gold J, Baggs J, Lyman M (2023) Candida auris\u2012associated hospitalizations, United States, 2017\u20132022. Emerg Infect Dis 29(7):1485-1487. https:\/\/doi.org\/10.3201\/eid2907.230540","journal-title":"Emerg Infect Dis"},{"key":"5577_CR299","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-024-10044-5","author":"F Villanueva-Cotrina","year":"2024","unstructured":"Villanueva-Cotrina F, Bejar V, Guevara J, Morey M, N\u00fanez C, Rodriguez M, Guzman D (2024) Biofilm formation and increased mortality among cancer patients with candidemia in a Peruvian reference center. BMC Infect Dis 24(1):1145. https:\/\/doi.org\/10.1186\/s12879-024-10044-5","journal-title":"BMC Infect Dis"},{"key":"5577_CR300","doi-asserted-by":"publisher","DOI":"10.1093\/mmy\/myad131","author":"M Asogan","year":"2024","unstructured":"Asogan M, Kim HY, Kidd S, Alastruey-Izquierdo A, Govender NP, Dao A et al (2024) Candida parapsilosis: a systematic review to inform the World Health Organization fungal priority pathogens list. Med Mycol 62(6):myad131. https:\/\/doi.org\/10.1093\/mmy\/myad131","journal-title":"Med Mycol"},{"key":"5577_CR301","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2024.106229","author":"J Salmanton-Garcia","year":"2024","unstructured":"Salmanton-Garcia J, Cornely OA, Stemler J, Barac A, Steinmann J et al (2024) Attributable mortality of candidemia \u2013 Results from the ECMM Candida III multinational European observational cohort study. J Infect 89(3):106229. https:\/\/doi.org\/10.1016\/j.jinf.2024.106229","journal-title":"J Infect"},{"key":"5577_CR302","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtumed.2020.12.002","author":"TS Al-Musawi","year":"2021","unstructured":"Al-Musawi TS, Alkhalifa WA, Alasaker NA, Rahman JU, Alnimr AM (2021) A seven-year surveillance of Candida bloodstream infection at a university hospital in KSA. J Taibah Uni Med Sci 16(2):184-190. https:\/\/doi.org\/10.1016\/j.jtumed.2020.12.002","journal-title":"J. Taibah Uni. Med. Sci."},{"key":"5577_CR303","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(17)30243-8","author":"R Rajasingham","year":"2017","unstructured":"Rajasingham R, Smith RM, Park BJ, Jarvis JN, Govender NP, Chiller TM et al (2017) Global burden of disease of HIV-associated cryptococcal meningitis: An updated analysis. Lancet Infect Dis 17(8):873-881. https:\/\/doi.org\/10.1016\/S1473-3099(17)30243-8","journal-title":"Lancet Infect Dis"},{"key":"5577_CR304","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00027-06","author":"CA Kauffman","year":"2020","unstructured":"Kauffman CA (2007) Histoplasmosis: a clinical and laboratory update. Clin Microbiol Rev 20(1):115-32. https:\/\/doi.org\/10.1128\/CMR.00027-06","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR305","doi-asserted-by":"publisher","DOI":"10.1128\/cmr.00159-22","author":"M Nucci","year":"2023","unstructured":"Nucci M, Anaissie E (2023) Invasive fusariosis. Clin Microbiol Rev 36(4):e0015922. https:\/\/doi.org\/10.1128\/cmr.00159-22","journal-title":"Clin Microbiol Rev"},{"key":"5577_CR306","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens11020242","author":"M Kourti","year":"2022","unstructured":"Kourti M, Roilides E (2022) Invasive trichosporonosis in neonates and pediatric patients with malignancies or hematologic disorders. Pathogens 11(2):242. https:\/\/doi.org\/10.3390\/pathogens11020242","journal-title":"Pathogens"},{"key":"5577_CR307","doi-asserted-by":"publisher","DOI":"10.3934\/microbiol.2023025","author":"M Wijaya","year":"2023","unstructured":"Wijaya M, Halleyantoro R, Kalumpiu JF (2023) Biofilm: the invisible culprit in catheter-induced candidemia. AIMS Microbiol 9(3):467-485. https:\/\/doi.org\/10.3934\/microbiol.2023025","journal-title":"AIMS Microbiol"},{"key":"5577_CR308","doi-asserted-by":"publisher","DOI":"10.3390\/jof10040293","author":"R Petraitiene","year":"2024","unstructured":"Petraitiene R, Petraitis V, Zaw MH, Hussain K, Ricart Arbona RJ, Roilides E, Walsh T (2024) Combination of systemic and lock-therapies with micafungin eradicate catheter-based biofilms and infections caused by Candida albicans and Candida parapsilosis in neutropenic rabbit models. J Fungi 10(4):293. https:\/\/doi.org\/10.3390\/jof10040293","journal-title":"J Fungi"},{"key":"5577_CR309","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2023.1135942","author":"LO Felix","year":"2023","unstructured":"Felix LO, Whitely C, Tharmalingam N, Mishra B, Vera-Gonzalez N, Mylonakis E, Shukla A, Fuchs BB (2023) Auranofin-coated catheters inhibit bacterial and fungal biofilms in a murine subcutaneous model. Front Cell Infect Microbiol 13:1135942. https:\/\/doi.org\/10.3389\/fcimb.2023.1135942","journal-title":"Front Cell Infect Microbiol"},{"key":"5577_CR310","doi-asserted-by":"publisher","DOI":"10.1016\/j.chest.2021.08.081","author":"DO Thomas-Ruddel","year":"2022","unstructured":"Thomas-Ruddel DO, Schlattmann P, Pletz M, Kurzai O, Bloos F (2022) Risk factors for invasive Candida infection in critically ill patients: a systematic review and meta-analysis. Chest 161(2):345-355. https:\/\/doi.org\/10.1016\/j.chest.2021.08.081","journal-title":"Chest"},{"key":"5577_CR311","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciag257","author":"S Das","year":"2026","unstructured":"Das S, Singh S, Tawde Y, Spruijtenburg B, Chakrabarti A, Rudramurthy SM, Meis JF, de Groot T, Meijer EFJ, Walia K, Kaur H, Ghosh A (2026) Trends in antifungal resistance and mechanistic insights into azole resistance in Candida (Candidozyma) auris: a 13-year study of a comprehensive set of clinical isolates from India. Clin Infect Dis 2026:ciag257, https:\/\/doi.org\/10.1093\/cid\/ciag257","journal-title":"Clin Infect Dis"},{"key":"5577_CR312","doi-asserted-by":"publisher","DOI":"10.3390\/jof11040258","author":"JA Vazquez","year":"2025","unstructured":"Vazquez JA, Whitaker L, Zubovskaia A (2025) Invasive candidiasis in the intensive care unit: where are we now? J Fungi 11(4):258. https:\/\/doi.org\/10.3390\/jof11040258","journal-title":"J Fungi"},{"key":"5577_CR313","doi-asserted-by":"publisher","DOI":"10.3390\/jof11030232","author":"MD Nguyen","year":"2025","unstructured":"Nguyen MD, Ren P (2025) Trends in antifungal resistance among Candida species: an eight-year retrospective study in the Galveston-Houston Gulf Coast Region. J Fungi (Basel) 11(3):232. https:\/\/doi.org\/10.3390\/jof11030232","journal-title":"J. Fungi (Basel)"},{"key":"5577_CR314","doi-asserted-by":"publisher","DOI":"10.1016\/j.jointm.2024.01.002","author":"JJ De Waele","year":"2024","unstructured":"De Waele JJ (2024) Importance of timely and adequate source control in sepsis and septic shock. J Intern Med 4(3):281-286. https:\/\/doi.org\/10.1016\/j.jointm.2024.01.002","journal-title":"J Intern Med"},{"key":"5577_CR315","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkad139","author":"A Soriano","year":"2023","unstructured":"Soriano A, Honore PM, Puerta-Alcalde P, Garcia-Vidal C, Pagotto A, Gon\u00e7alves-Bradley DC, Verweij PE (2023) Invasive candidiasis: current clinical challenges and unmet needs in adult populations. J Antimicrob Chemother 78(7):1569-1585. https:\/\/doi.org\/10.1093\/jac\/dkad139","journal-title":"J Antimicrob Chemother"},{"key":"5577_CR316","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-10908-4","author":"T Liu","year":"2025","unstructured":"Liu T, Sun S, Zhu X, Wu H, Sun Z, Peng S (2025) Epidemiology, clinical characteristics, and outcome in candidemia: a retrospective five-year analysis from two tertiary general hospitals. BMC Infect Dis 25: 512. https:\/\/doi.org\/10.1186\/s12879-025-10908-4","journal-title":"BMC Infect Dis"},{"key":"5577_CR317","doi-asserted-by":"publisher","DOI":"10.3201\/eid2703.203482","author":"E Won","year":"2021","unstructured":"Won E, Choi MJ, Kim M, Yong D, Lee W, Uh Y, Park M et al (2021) Fluconazole-resistant Candida glabrata bloodstream isolates, South Korea, 2008\u20132018. Emerg Infect Dis 27(3):779-788. https:\/\/doi.org\/10.3201\/eid2703.203482","journal-title":"Emerg Infect Dis"},{"key":"5577_CR318","doi-asserted-by":"publisher","DOI":"10.1080\/1120009X.2020.1783154","author":"L Brescini","year":"2020","unstructured":"Brescini L, Mazzanti S, Orsetti E, Morroni G, Masucci A, Pocognoli A, Barchiesi F (2020) Species distribution and antifungal susceptibilities of bloodstream Candida isolates: a nine-years single center survey. J Chemother 32(5):244-250. https:\/\/doi.org\/10.1080\/1120009X.2020.1783154","journal-title":"J Chemother"},{"key":"5577_CR319","doi-asserted-by":"publisher","DOI":"10.1111\/1469-0691.12380","author":"M Puig-Asensio","year":"2014","unstructured":"Puig-Asensio M, Padilla B, Garnacho-Montero J, Zaragoza O, Aguado JM, Zaragoza R, Rodr\u00edguez-Bano J (2014) Epidemiology and predictive factors for early and late mortality in Candida bloodstream infections: a population-based surveillance in Spain. Clin Microbiol Infect 20 (4): O245-O254. https:\/\/doi.org\/10.1111\/1469-0691.12380","journal-title":"Clin Microbiol Infect"},{"key":"5577_CR320","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00222-07","author":"ZU Khan","year":"2007","unstructured":"Khan ZU, Al-Sweih NA, Ahmad S, Al-Kazemi N, Khan S, Joseph L, Chandy R (2007) Outbreak of fungemia among neonates caused by Candida haemulonii resistant to amphotericin B, itraconazole, and fluconazole. J Clin Microbiol 45(6):2025-2027. https:\/\/doi.org\/10.1128\/JCM.00222-07","journal-title":"J Clin Microbiol"},{"key":"5577_CR321","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12020210","author":"SM Bandy","year":"2023","unstructured":"Bandy SM, Jackson CB, Black CA, Godinez W, Gawrys GW, Lee GC (2023) Molecular rapid diagnostics improve time to effective therapy and survival in patients with vancomycin-resistant Enterococcus bloodstream infections. Antibiotics 12(2):210. https:\/\/doi.org\/10.3390\/antibiotics12020210","journal-title":"Antibiotics"},{"key":"5577_CR322","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciae234","author":"AM Peri","year":"2024","unstructured":"Peri AM, Chatfield MD, Ling W, Furuya-Kanamori L, Harris PNA, Paterson DL (2024) Rapid diagnostic tests and antimicrobial stewardship programs for the management of bloodstream infection: what is their relative contribution to improving clinical outcomes? A systematic review and network meta-analysis. Clin Infect Dis 79(2):502-515. https:\/\/doi.org\/10.1093\/cid\/ciae234","journal-title":"Clin Infect Dis"},{"key":"5577_CR323","doi-asserted-by":"publisher","DOI":"10.4103\/jgid.jgid_108_23","author":"MD Shivalingappa","year":"2024","unstructured":"Shivalingappa MD, Gachinmath S, Narayan SK (2024) Associated risk factors and clinical outcomes of bloodstream infections among COVID-19 intensive care unit patients in a tertiary care hospital. J Glob Infect Dis 16(2):60-67. https:\/\/doi.org\/10.4103\/jgid.jgid_108_23","journal-title":"J Glob Infect Dis"},{"key":"5577_CR324","doi-asserted-by":"publisher","DOI":"10.1007\/s00268-020-05380-x","author":"T Yan","year":"2020","unstructured":"Yan T, Li S-L, Ou H-L, Zhu S-N, Huang L, Wang D-X (2020) Appropriate source control and antifungal therapy are associated with improved survival in critically ill surgical patients with intra-abdominal candidiasis. World J Surg 44(5):1459-1469. https:\/\/doi.org\/10.1007\/s00268-020-05380-x","journal-title":"World J Surg"},{"key":"5577_CR325","doi-asserted-by":"publisher","DOI":"10.3389\/fmed.2019.00074","volume":"6","author":"M Bassetti","year":"2019","unstructured":"Bassetti M, Peghin M, Vena A, Giacobbe DR (2019) Treatment of infections due to MDR Gram-negative bacteria. Front Med 6:74. https:\/\/doi.org\/10.3389\/fmed.2019.00074","journal-title":"Front Med"},{"key":"5577_CR326","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00296-11","author":"KM Papp-Wallace","year":"2011","unstructured":"Papp-Wallace KM, Endimiani A, Taracila MA, Bonomo RA (2011) Carbapenems: past, present, and future. Antimicrob Agents Chemother. https:\/\/doi.org\/10.1128\/AAC.00296-11","journal-title":"Antimicrob Agents Chemother"},{"key":"5577_CR327","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-025-01522-9","author":"S Brinkwirth","year":"2017","unstructured":"Brinkwirth S, Feig M, Noll I, K\u00e4mper M, Fischer S, Weber H, Leimbach A, Zimmermann O, Kress J (2025) Changing dynamics of bloodstream infections due to methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus faecium in Germany, 2017\u20132023: a continued burden of disease approach. Antimicrob Resist Infect Control 14(1):4. https:\/\/doi.org\/10.1186\/s13756-025-01522-9","journal-title":"Antimicrob Resist Infect Control"},{"key":"5577_CR328","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijmm.2019.04.001","author":"DN Brunson","year":"2019","unstructured":"Brunson DN, Maldosevic E, Velez A, Figgins E, Ellis TN (2019) Porin loss in Klebsiella pneumoniae clinical isolates impacts production of virulence factors and survival within macrophages. Int J Med Microbiol 309(3-4):213-224. https:\/\/doi.org\/10.1016\/j.ijmm.2019.04.001","journal-title":"Int J Med Microbiol"},{"key":"5577_CR329","doi-asserted-by":"publisher","DOI":"10.22092\/ARI.2022.356976.1952","author":"EA Muhsin","year":"2022","unstructured":"Muhsin EA, Al-Jubori SS, Said LA (2022) Prevalence of efflux pump and porin-related antimicrobial resistance in clinical Klebsiella pneumoniae in Baghdad, Iraq. Arch Razi Inst 77(2):785-798. https:\/\/doi.org\/10.22092\/ARI.2022.356976.1952","journal-title":"Arch Razi Inst"},{"key":"5577_CR330","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiw282","author":"LK Logan","year":"2017","unstructured":"Logan LK, Weinstein RA (2017) The epidemiology of carbapenem-resistant Enterobacteriaceae: the impact and evolution of a global menace. J Infect Dis 215(suppl_1):S28-S36. https:\/\/doi.org\/10.1093\/infdis\/jiw282","journal-title":"J Infect Dis"},{"key":"5577_CR331","doi-asserted-by":"publisher","DOI":"10.1111\/2049-632X.12125","author":"LCS Antunes","year":"2014","unstructured":"Antunes LCS, Visca P, Towner KJ (2014) Acinetobacter baumannii: evolution of a global pathogen. Pathog Dis 71(3):292-301. https:\/\/doi.org\/10.1111\/2049-632X.12125","journal-title":"Pathog Dis"},{"key":"5577_CR332","doi-asserted-by":"publisher","DOI":"10.3390\/jcm15020527","author":"A Kuncka","year":"2026","unstructured":"Kuncka A, Le\u015bnik P, Janc J, Dzier\u017canowska-Fangrat K, Bia\u0142a M, Ko\u0142at-Brodecka P, S\u0142abisz N (2026) Epidemiology of carbapenem-resistant Acinetobacter baumannii bloodstream infections in Poland: a multi-center study of mortality, risk factors and drug resistance. J Clin Med 15(2):527. https:\/\/doi.org\/10.3390\/jcm15020527","journal-title":"J Clin Med"},{"key":"5577_CR333","doi-asserted-by":"publisher","DOI":"10.1080\/22221751.2020.1769500","author":"O Ayobami","year":"2020","unstructured":"Ayobami O, Willrich N, Reuss A, Eckmanns T, Markwart R (2020) The ongoing challenge of vancomycin-resistant Enterococcus faecium and Enterococcus faecalis in Europe: an epidemiological analysis of bloodstream infections. Emerg Microbes Infect 9(1):1180\u20131193. https:\/\/doi.org\/10.1080\/22221751.2020.1769500","journal-title":"Emerg Microbes Infect"},{"key":"5577_CR334","doi-asserted-by":"publisher","DOI":"10.2807\/1560-7917.ES.2024.29.23.2300633","author":"AM Hammerum","year":"2015","unstructured":"Hammerum AM, Karstensen KT, Roer L, Kaya H, Lindegaard M, Porsbo LJ, Kjerulf A, Pinholt M, Holzknecht BJ, Worning P, Nielsen KL, Hansen SGK, Clausen M, S\u00f8ndergaard TS, Dzajic E, \u00d8stergaard C, Wang M, Koch K, Hasman H (2024) Surveillance of vancomycin-resistant enterococci reveals shift in dominating clusters from vanA to vanB Enterococcus faecium clusters, Denmark, 2015 to 2022. Euro Surveill 29(23):2300633. https:\/\/doi.org\/10.2807\/1560-7917.ES.2024.29.23.2300633","journal-title":"Euro Surveill"},{"key":"5577_CR335","doi-asserted-by":"publisher","DOI":"10.1016\/j.fgb.2019.103243","author":"SR Lockhart","year":"2019","unstructured":"Lockhart SR (2019) Candida auris and multidrug resistance: defining the new normal. Fungal Genet Biol 131:103243. https:\/\/doi.org\/10.1016\/j.fgb.2019.103243","journal-title":"Fungal Genet Biol"},{"key":"5577_CR336","doi-asserted-by":"publisher","DOI":"10.1007\/s40588-024-00233-w","author":"A Fenton","year":"2024","unstructured":"Fenton A, John GK (2024) Candida auris resistance mechanisms to amphotericin B alternative treatments development. Curr Clin Microbiol Rep 11: 166\u2013176. https:\/\/doi.org\/10.1007\/s40588-024-00233-w","journal-title":"Curr Clin Microbiol Rep"},{"key":"5577_CR337","doi-asserted-by":"publisher","DOI":"10.1007\/s12223-026-01516-z","author":"J Korenekova","year":"2026","unstructured":"Korenekova J, Olejn\u00edkov\u00e1 P, Hru\u0161kov\u00e1 M, Vavrekov\u00e1 A, Mitura M, Hisirov\u00e1 S, Ko\u0161\u010dov\u00e1 J, B\u00edro\u0161ov\u00e1 L (2026) Interplay between enterotoxigenicity, antimicrobial resistance, and persistence mechanisms in Staphylococcus spp. across different origins. Folia Microbiol. https:\/\/doi.org\/10.1007\/s12223-026-01516-z","journal-title":"Folia Microbiol"},{"key":"5577_CR338","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.01015-24","author":"S-S Weng","year":"2025","unstructured":"Weng S-S, Lin L, Xie J-F, Hu B-C, Ma X-Q et al (2025) Performance of ddPCR-GNB for microbial diagnosis of suspected bloodstream infection due to the four most common gram-negative bacteria: a prospective, multicenter study. Microbiol Spectr 13(4):e0101524. https:\/\/doi.org\/10.1128\/spectrum.01015-24","journal-title":"Microbiol Spectr"},{"key":"5577_CR339","doi-asserted-by":"crossref","unstructured":"Sroka-Oleksiak A, Pardyl A, Rymarczyk D, Olechowska-Jarz\u0105b A, Biegun-Drozdz K et al (2025) AI-driven rapid identification of bacterial and fungal pathogens in blood smears of septic patients. Front Microbiol 199:111328. https:\/\/arxiv.org\/abs\/2503.14542","DOI":"10.1016\/j.compbiomed.2025.111328"},{"key":"5577_CR340","doi-asserted-by":"publisher","DOI":"10.1007\/s11033-025-11422-1","author":"DC Erdogan","year":"2026","unstructured":"Erdogan DC, \u00c7uglan SS, Ozmerdiven GE, Celik F, \u0130rvem A (2026) Comparison of pathogen and resistance profiles in bloodstream infections using conventional methods and multiplex RT-PCR. Mol Biol Rep 53(1):290. https:\/\/doi.org\/10.1007\/s11033-025-11422-1","journal-title":"Mol Biol Rep"},{"key":"5577_CR341","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-51470-y","author":"JK Tan","year":"2024","unstructured":"Tan JK, Servellita V, Stryke D, Kelly E, Streithorst J, Sumimoto N, Foresythe A, Huh HJ, Nguyen J, Oseguera M, Brazer N, Tang J, Ingebrigtsen D, Fung B, Reyes H, Hillberg M, Chen A, Guevara H, Yagi S, Morales C, Wadford DA, Mourani PM, Langelier CR, de Lorenzi-Tognon M, Benoit P, Chiu CY (2024) Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery. Nat Commun 15(1):9016. https:\/\/doi.org\/10.1038\/s41467-024-51470-y","journal-title":"Nat Commun"},{"key":"5577_CR342","doi-asserted-by":"publisher","DOI":"10.1007\/s10096-025-05289-0","author":"F Pan","year":"2026","unstructured":"Pan F, Yu F, Zhang H, Chen P, Weng W (2026) Clinical application of metagenomic next-generation sequencing (mNGS) in children with suspected bloodstream infection. Eur J Clin Microbiol Infect Dis 45(1):113-123. https:\/\/doi.org\/10.1007\/s10096-025-05289-0","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"5577_CR343","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-11834-w","author":"L Yi","year":"2025","unstructured":"Yi L, Tan L, Long Q, Lyu X, Zeng H, Peng Y, Gu D, Liu H, Ge H, Yu Y, Li Z, Hu M (2025) Comparative diagnostic performance of metagenomic and two targeted sequencing methods in lower respiratory infection. Sci Rep 15(1):27365. https:\/\/doi.org\/10.1038\/s41598-025-11834-w","journal-title":"Sci Rep"},{"key":"5577_CR344","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-11814-5","author":"A Shen","year":"2025","unstructured":"Shen A, Xu X, Xu L, Nie X, Ai J, Chen W (2025) Clinical utility of metagenomic next-generation sequencing (mNGS) and a novel PCR-based point-of-care testing (POCT) for pathogen detection in pulmonary infections: a retrospective study. BMC Infect Dis 25(1):1817. https:\/\/doi.org\/10.1186\/s12879-025-11814-5","journal-title":"BMC Infect Dis"},{"key":"5577_CR345","doi-asserted-by":"publisher","DOI":"10.1038\/s41746-025-01948-w","author":"MH Marino Miguelez","year":"2025","unstructured":"Marino Miguelez MH, Osaid M, Hallstr\u00f6m E, Kaya K, Larsson J, Kandavalli V, Wahlby C, Elf J, van der Wijngaart W (2025) Culture-free detection of bacteria from blood for rapid sepsis diagnosis. npj Digit Med 8(1):544. https:\/\/doi.org\/10.1038\/s41746-025-01948-w","journal-title":"npj Digit Med"},{"key":"5577_CR346","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.01498-23","author":"V Iyer","year":"2024","unstructured":"Iyer V, Castro D, Malla B, Panda B, Rabson AR, Horowitz G, Heger N, Gupta K, Singer A, Norwitz ER (2024) Culture-independent identification of bloodstream infections from whole blood: prospective evaluation in specimens of known infection status. J Clin Microbiol 62(3):e0149823. https:\/\/doi.org\/10.1128\/jcm.01498-23","journal-title":"J Clin Microbiol"},{"key":"5577_CR347","doi-asserted-by":"publisher","DOI":"10.1016\/S2468-2667(22)00225-0","author":"T Mestrovic","year":"2019","unstructured":"Mestrovic T, Aguilar GR, Swetschinski LR, Ikuta KS, Gray AP, Weaver ND, Han C, Wool EE, Hayoon AG, Hay SI, Dolecek C, Sartorius B, Murray CJL, Addo IY, Ahinkorah BO et al (2019) The burden of bacterial antimicrobial resistance in the WHO European region in 2019: a cross-country systematic analysis. Lancet Public Health 7(11):e897-e913. https:\/\/doi.org\/10.1016\/S2468-2667(22)00225-0","journal-title":"Lancet Public Health"},{"key":"5577_CR348","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.00512-20","author":"Y Tang","year":"2020","unstructured":"Tang Y, Schmitz JE, Persing DH, Stratton CW (2020) Laboratory diagnosis of COVID-19: current issues and challenges. J Clin Microbiol 58(6):e00512-20. https:\/\/doi.org\/10.1128\/jcm.00512-20","journal-title":"J Clin Microbiol"}],"container-title":["European Journal of Clinical Microbiology & Infectious Diseases"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-026-05577-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10096-026-05577-3","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10096-026-05577-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,18]],"date-time":"2026-10-18T00:02:36Z","timestamp":1792281756000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10096-026-05577-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,2]]},"references-count":348,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["5577"],"URL":"https:\/\/doi.org\/10.1007\/s10096-026-05577-3","relation":{},"ISSN":["0934-9723","1435-4373"],"issn-type":[{"value":"0934-9723","type":"print"},{"value":"1435-4373","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,2]]},"assertion":[{"value":"16 September 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 June 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"2 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"There are no ethical issues in this manuscript. This article is a review paper and does not involve studies or experiments on human or animals.","order":1,"name":"Ethics","label":"Ethical approval","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All authors whose names appear on the submission: 1) made substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data; or the creation of new software used in the work; 2) drafted the work or revised it critically for important intellectual content; 3) approved the final version to be published; and 4) agree to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.","order":2,"name":"Ethics","label":"Consent to participate","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All the authors affirm that the content of the manuscript is original, has not been published elsewhere, and is not currently under consideration by any other journal. Proper citations have been duly provided where applicable. A figure (figure 6) was taken from a recently published research paper with the permission of Journal\u2019s Editor-in-Chief and the publishing company. Proper citation was given in the diagram as well as in the reference section.","order":3,"name":"Ethics","label":"Consent to the journal","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This content has been made available to all.","name":"free","label":"Free to read"}]}}