{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T18:35:51Z","timestamp":1793298951801,"version":"4.5.0"},"reference-count":70,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mar Biotechnol"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1007\/s10126-026-10716-0","type":"journal-article","created":{"date-parts":[[2026,10,10]],"date-time":"2026-10-10T21:30:20Z","timestamp":1791667820000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Orthology-Aware Reanalysis of Replicated Public Transcriptomes Identifies Shared and Context-Dependent Low-Temperature Responses in Teleost Fishes"],"prefix":"10.1007","volume":"28","author":[{"given":"Yian","family":"Huo","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Keer","family":"Luan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,10,10]]},"reference":[{"key":"10716_CR1","doi-asserted-by":"publisher","first-page":"3738","DOI":"10.1128\/MCB.21.11.3738-3749.2001","volume":"21","author":"U Andersson","year":"2001","unstructured":"Andersson U, Scarpulla RC (2001) Pgc-1-related coactivator, a novel serum-inducible coactivator of nuclear respiratory factor 1-dependent transcription in mammalian cells. Mol Cell Biol 21:3738\u20133749. https:\/\/doi.org\/10.1128\/MCB.21.11.3738-3749.2001","journal-title":"Mol Cell Biol"},{"key":"10716_CR2","doi-asserted-by":"publisher","first-page":"D991","DOI":"10.1093\/nar\/gks1193","volume":"41","author":"T Barrett","year":"2013","unstructured":"Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, Yefanov A, Lee H, Zhang N, Robertson CL, Serova N, Davis S, Soboleva A (2013) NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res 41:D991\u2013D995. https:\/\/doi.org\/10.1093\/nar\/gks1193","journal-title":"Nucleic Acids Res"},{"key":"10716_CR3","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1023\/A:1007676325825","volume":"58","author":"TL Beitinger","year":"2000","unstructured":"Beitinger TL, Bennett WA, McCauley RW (2000) Temperature tolerances of North American freshwater fishes exposed to dynamic changes in temperature. Environ Biol Fish 58:237\u2013275. https:\/\/doi.org\/10.1023\/A:1007676325825","journal-title":"Environ Biol Fish"},{"key":"10716_CR4","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Stat Methodol 57:289\u2013300. https:\/\/doi.org\/10.1111\/j.2517-6161.1995.tb02031.x","journal-title":"J R Stat Soc Ser B Stat Methodol"},{"key":"10716_CR5","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1016\/j.fsi.2008.03.017","volume":"25","author":"TJ Bowden","year":"2008","unstructured":"Bowden TJ (2008) Modulation of the immune system of fish by their environment. Fish Shellfish Immunol 25:373\u2013383. https:\/\/doi.org\/10.1016\/j.fsi.2008.03.017","journal-title":"Fish Shellfish Immunol"},{"key":"10716_CR6","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1038\/ng1201-365","volume":"29","author":"A Brazma","year":"2001","unstructured":"Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FCP, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29:365\u2013371. https:\/\/doi.org\/10.1038\/ng1201-365","journal-title":"Nat Genet"},{"key":"10716_CR7","doi-asserted-by":"publisher","first-page":"2660","DOI":"10.1242\/jeb.02292","volume":"209","author":"BA Buckley","year":"2006","unstructured":"Buckley BA, Gracey AY, Somero GN (2006) The cellular response to heat stress in the goby Gillichthys mirabilis: a cDNA microarray and protein-level analysis. J Exp Biol 209:2660\u20132677. https:\/\/doi.org\/10.1242\/jeb.02292","journal-title":"J Exp Biol"},{"key":"10716_CR8","doi-asserted-by":"publisher","first-page":"1491","DOI":"10.1111\/j.1095-8649.2008.02061.x","volume":"73","author":"MR Donaldson","year":"2008","unstructured":"Donaldson MR, Cooke SJ, Patterson DA, Macdonald JS (2008) Cold shock and fish. J Fish Biol 73:1491\u20131530. https:\/\/doi.org\/10.1111\/j.1095-8649.2008.02061.x","journal-title":"J Fish Biol"},{"key":"10716_CR9","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1832-y","volume":"20","author":"DM Emms","year":"2019","unstructured":"Emms DM, Kelly S (2019) OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome Biol 20:238. https:\/\/doi.org\/10.1186\/s13059-019-1832-y","journal-title":"Genome Biol"},{"key":"10716_CR10","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1146\/annurev.physiol.61.1.243","volume":"61","author":"ME Feder","year":"1999","unstructured":"Feder ME, Hofmann GE (1999) Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annu Rev Physiol 61:243\u2013282. https:\/\/doi.org\/10.1146\/annurev.physiol.61.1.243","journal-title":"Annu Rev Physiol"},{"key":"10716_CR11","doi-asserted-by":"publisher","first-page":"D325","DOI":"10.1093\/nar\/gkaa1113","volume":"49","author":"Gene Ontology Consortium","year":"2021","unstructured":"Gene Ontology Consortium (2021) The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res 49:D325\u2013D334. https:\/\/doi.org\/10.1093\/nar\/gkaa1113","journal-title":"Nucleic Acids Res"},{"key":"10716_CR12","doi-asserted-by":"publisher","first-page":"1045","DOI":"10.1007\/s00438-014-0889-2","volume":"289","author":"SMK Glasauer","year":"2014","unstructured":"Glasauer SMK, Neuhauss SCF (2014) Whole-genome duplication in teleost fishes and its evolutionary consequences. Mol Genet Genomics 289:1045\u20131060. https:\/\/doi.org\/10.1007\/s00438-014-0889-2","journal-title":"Mol Genet Genomics"},{"key":"10716_CR13","doi-asserted-by":"publisher","first-page":"16970","DOI":"10.1073\/pnas.0403627101","volume":"101","author":"AY Gracey","year":"2004","unstructured":"Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR (2004) Coping with cold: an integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proc Natl Acad Sci USA 101:16970\u201316975. https:\/\/doi.org\/10.1073\/pnas.0403627101","journal-title":"Proc Natl Acad Sci USA"},{"key":"10716_CR14","doi-asserted-by":"publisher","first-page":"728","DOI":"10.1016\/j.cell.2008.08.022","volume":"134","author":"CB Green","year":"2008","unstructured":"Green CB, Takahashi JS, Bass J (2008) The meter of metabolism. Cell 134:728\u2013742. https:\/\/doi.org\/10.1016\/j.cell.2008.08.022","journal-title":"Cell"},{"key":"10716_CR15","doi-asserted-by":"publisher","first-page":"5477","DOI":"10.1016\/j.febslet.2006.06.066","volume":"580","author":"IA Guschina","year":"2006","unstructured":"Guschina IA, Harwood JL (2006) Mechanisms of temperature adaptation in poikilotherms. FEBS Lett 580:5477\u20135483. https:\/\/doi.org\/10.1016\/j.febslet.2006.06.066","journal-title":"FEBS Lett"},{"key":"10716_CR16","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/s41586-020-2649-2","volume":"585","author":"CR Harris","year":"2020","unstructured":"Harris CR, Millman KJ, van der Walt SJ, Gommers R, Virtanen P, Cournapeau D, Wieser E, Taylor J, Berg S, Smith NJ, Kern R, Picus M, Hoyer S, van Kerkwijk MH, Brett M, Haldane A, del Rio JF, Wiebe M, Peterson P, Gerard-Marchant P, Sheppard K, Reddy T, Weckesser W, Abbasi H, Gohlke C, Oliphant TE (2020) Array programming with NumPy. Nature 585:357\u2013362. https:\/\/doi.org\/10.1038\/s41586-020-2649-2","journal-title":"Nature"},{"key":"10716_CR17","doi-asserted-by":"publisher","first-page":"324","DOI":"10.1038\/nature10317","volume":"475","author":"FU Hartl","year":"2011","unstructured":"Hartl FU, Bracher A, Hayer-Hartl M (2011) Molecular chaperones in protein folding and proteostasis. Nature 475:324\u2013332. https:\/\/doi.org\/10.1038\/nature10317","journal-title":"Nature"},{"key":"10716_CR18","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1146\/annurev.ph.57.030195.000315","volume":"57","author":"JR Hazel","year":"1995","unstructured":"Hazel JR (1995) Thermal adaptation in biological membranes: is homeoviscous adaptation the explanation? Annu Rev Physiol 57:19\u201342. https:\/\/doi.org\/10.1146\/annurev.ph.57.030195.000315","journal-title":"Annu Rev Physiol"},{"key":"10716_CR19","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1016\/0163-7827(90)90002-3","volume":"29","author":"JR Hazel","year":"1990","unstructured":"Hazel JR, Williams EE (1990) The role of alterations in membrane lipid composition in enabling physiological adaptation of organisms to their physical environment. Prog Lipid Res 29:167\u2013227. https:\/\/doi.org\/10.1016\/0163-7827(90)90002-3","journal-title":"Prog Lipid Res"},{"key":"10716_CR20","doi-asserted-by":"publisher","DOI":"10.1093\/database\/bav096","volume":"2016","author":"J Herrero","year":"2016","unstructured":"Herrero J, Muffato M, Beal K, Fitzgerald S, Gordon L, Pignatelli M, Vilella AJ, Searle SMJ, Amode R, Brent S, Spooner W, Kulesha E, Yates A, Flicek P (2016) Ensembl comparative genomics resources. Database bav096. https:\/\/doi.org\/10.1093\/database\/bav096","journal-title":"Database"},{"key":"10716_CR21","doi-asserted-by":"publisher","first-page":"5965","DOI":"10.1242\/jcs.01589","volume":"117","author":"J Hess","year":"2004","unstructured":"Hess J, Angel P, Schorpp-Kistner M (2004) AP-1 subunits: quarrel and harmony among siblings. J Cell Sci 117:5965\u20135973. https:\/\/doi.org\/10.1242\/jcs.01589","journal-title":"J Cell Sci"},{"key":"10716_CR22","doi-asserted-by":"publisher","first-page":"841","DOI":"10.1038\/nature01123","volume":"419","author":"S Honma","year":"2002","unstructured":"Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K (2002) Dec1 and Dec2 are regulators of the mammalian molecular clock. Nature 419:841\u2013844. https:\/\/doi.org\/10.1038\/nature01123","journal-title":"Nature"},{"key":"10716_CR23","doi-asserted-by":"publisher","DOI":"10.1038\/srep28952","volume":"6","author":"P Hu","year":"2016","unstructured":"Hu P, Liu M, Liu Y, Wang J, Zhang D, Niu H, Jiang S, Wang J, Zhang D, Han B, Xu Q, Chen L (2016) Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish. Sci Rep 6:28952. https:\/\/doi.org\/10.1038\/srep28952","journal-title":"Sci Rep"},{"key":"10716_CR24","doi-asserted-by":"publisher","first-page":"90","DOI":"10.1109\/MCSE.2007.55","volume":"9","author":"JD Hunter","year":"2007","unstructured":"Hunter JD (2007) Matplotlib: A 2D graphics environment. Comput Sci Eng 9:90\u201395. https:\/\/doi.org\/10.1109\/MCSE.2007.55","journal-title":"Comput Sci Eng"},{"key":"10716_CR25","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1186\/s12944-017-0473-y","volume":"16","author":"H Itabe","year":"2017","unstructured":"Itabe H, Yamaguchi T, Nimura S, Sasabe N (2017) Perilipins: a diversity of intracellular lipid droplet proteins. Lipids Health Dis 16:83. https:\/\/doi.org\/10.1186\/s12944-017-0473-y","journal-title":"Lipids Health Dis"},{"issue":"2065","key":"10716_CR26","doi-asserted-by":"publisher","first-page":"20150202","DOI":"10.1098\/rsta.2015.0202","volume":"374","author":"IT Jolliffe","year":"2016","unstructured":"Jolliffe IT, Cadima J (2016) Principal component analysis: a review and recent developments. Philos Trans R Soc A Math Phys Eng Sci 374:20150202. https:\/\/doi.org\/10.1098\/rsta.2015.0202","journal-title":"Philos Trans R Soc A Math Phys Eng Sci"},{"key":"10716_CR27","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1093\/nar\/28.1.27","volume":"28","author":"M Kanehisa","year":"2000","unstructured":"Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28:27\u201330. https:\/\/doi.org\/10.1093\/nar\/28.1.27","journal-title":"Nucleic Acids Res"},{"key":"10716_CR28","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1016\/j.gene.2016.03.058","volume":"586","author":"F Katsuoka","year":"2016","unstructured":"Katsuoka F, Yamamoto M (2016) Small Maf proteins (MafF, MafG, MafK): history, structure and function. Gene 586:197\u2013205. https:\/\/doi.org\/10.1016\/j.gene.2016.03.058","journal-title":"Gene"},{"key":"10716_CR29","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1007\/s10555-008-9123-1","volume":"27","author":"SM Keyse","year":"2008","unstructured":"Keyse SM (2008) Dual-specificity MAP kinase phosphatases (MKPs) and cancer. Cancer Metastasis Rev 27:253\u2013261. https:\/\/doi.org\/10.1007\/s10555-008-9123-1","journal-title":"Cancer Metastasis Rev"},{"key":"10716_CR30","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1146\/annurev.genet.39.073003.114725","volume":"39","author":"EV Koonin","year":"2005","unstructured":"Koonin EV (2005) Orthologs, paralogs, and evolutionary genomics. Annu Rev Genet 39:309\u2013338. https:\/\/doi.org\/10.1146\/annurev.genet.39.073003.114725","journal-title":"Annu Rev Genet"},{"key":"10716_CR31","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1146\/annurev.physiol.67.040403.103635","volume":"67","author":"D Kultz","year":"2005","unstructured":"Kultz D (2005) Molecular and evolutionary basis of the cellular stress response. Annu Rev Physiol 67:225\u2013257. https:\/\/doi.org\/10.1146\/annurev.physiol.67.040403.103635","journal-title":"Annu Rev Physiol"},{"key":"10716_CR32","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.0030351","volume":"3","author":"K Lahiri","year":"2005","unstructured":"Lahiri K, Vallone D, Gondi SB, Santoriello C, Dickmeis T, Foulkes NS (2005) Temperature regulates transcription in the zebrafish circadian clock. PLoS Biol 3:e351. https:\/\/doi.org\/10.1371\/journal.pbio.0030351","journal-title":"PLoS Biol"},{"key":"10716_CR33","doi-asserted-by":"publisher","first-page":"D19","DOI":"10.1093\/nar\/gkq1019","volume":"39","author":"R Leinonen","year":"2011","unstructured":"Leinonen R, Sugawara H, Shumway M, International Nucleotide Sequence Database Collaboration (2011) The sequence read archive. Nucleic Acids Res 39:D19\u2013D21. https:\/\/doi.org\/10.1093\/nar\/gkq1019","journal-title":"Nucleic Acids Res"},{"key":"10716_CR34","doi-asserted-by":"publisher","first-page":"200","DOI":"10.1038\/nature17164","volume":"533","author":"S Lien","year":"2016","unstructured":"Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JKA, Vik JO, Vigeland MD, Caler L, Grimholt U, Jentoft S, Vage DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Liberles DA, Vidal R, Iturra P, Jones SJM, Jonassen I, Maass A, Omholt SW, Davidson WS (2016) The Atlantic salmon genome provides insights into rediploidization. Nature 533:200\u2013205. https:\/\/doi.org\/10.1038\/nature17164","journal-title":"Nature"},{"key":"10716_CR35","doi-asserted-by":"publisher","first-page":"R1373","DOI":"10.1152\/ajpregu.00689.2010","volume":"300","author":"CA Logan","year":"2011","unstructured":"Logan CA, Somero GN (2011) Effects of thermal acclimation on transcriptional responses to acute heat stress in the eurythermal fish Gillichthys mirabilis. Am J Physiology-Regulatory Integr Comp Physiol 300:R1373\u2013R1383. https:\/\/doi.org\/10.1152\/ajpregu.00689.2010","journal-title":"Am J Physiology-Regulatory Integr Comp Physiol"},{"key":"10716_CR36","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2020.556418","volume":"11","author":"Y Long","year":"2020","unstructured":"Long Y, Li X, Li F, Ge G, Liu R, Song G, Li Q, Qiao Z, Cui Z (2020) Transcriptional programs underlying cold acclimation of common carp (Cyprinus carpio L.). Front Genet 11:556418. https:\/\/doi.org\/10.3389\/fgene.2020.556418","journal-title":"Front Genet"},{"key":"10716_CR37","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1007\/s10126-010-9279-x","volume":"12","author":"B Magnadottir","year":"2010","unstructured":"Magnadottir B (2010) Immunological control of fish diseases. Mar Biotechnol 12:361\u2013379. https:\/\/doi.org\/10.1007\/s10126-010-9279-x","journal-title":"Mar Biotechnol"},{"key":"10716_CR38","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1016\/j.fsi.2016.03.008","volume":"53","author":"DL Makrinos","year":"2016","unstructured":"Makrinos DL, Bowden TJ (2016) Natural environmental impacts on teleost immune function. Fish Shellfish Immunol 53:50\u201357. https:\/\/doi.org\/10.1016\/j.fsi.2016.03.008","journal-title":"Fish Shellfish Immunol"},{"key":"10716_CR39","doi-asserted-by":"publisher","unstructured":"McKinney W (2010) Data structures for statistical computing in Python. Proc 9th Python Sci Conf 56\u201361. https:\/\/doi.org\/10.25080\/Majora-92bf1922-00a","DOI":"10.25080\/Majora-92bf1922-00a"},{"key":"10716_CR40","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-15-765","volume":"15","author":"AN Mininni","year":"2014","unstructured":"Mininni AN, Milan M, Ferraresso S, Petochi T, Di Marco P, Marino G, Livi S, Romualdi C, Bargelloni L, Patarnello T (2014) Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature. BMC Genomics 15:765. https:\/\/doi.org\/10.1186\/1471-2164-15-765","journal-title":"BMC Genomics"},{"key":"10716_CR41","doi-asserted-by":"publisher","first-page":"3788","DOI":"10.1101\/gad.12.24.3788","volume":"12","author":"RI Morimoto","year":"1998","unstructured":"Morimoto RI (1998) Regulation of the heat shock transcriptional response: cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes Dev 12:3788\u20133796. https:\/\/doi.org\/10.1101\/gad.12.24.3788","journal-title":"Genes Dev"},{"key":"10716_CR42","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2019.00100","volume":"10","author":"T Nitzan","year":"2019","unstructured":"Nitzan T, Kokou F, Doron-Faigenboim A, Slosman T, Biran J, Mizrahi I, Zak T, Benet A, Cnaani A (2019) Transcriptome analysis reveals common and differential response to low temperature exposure between tolerant and sensitive blue tilapia (Oreochromis aureus). Front Genet 10:100. https:\/\/doi.org\/10.3389\/fgene.2019.00100","journal-title":"Front Genet"},{"key":"10716_CR43","doi-asserted-by":"publisher","first-page":"D1002","DOI":"10.1093\/nar\/gkq1040","volume":"39","author":"H Parkinson","year":"2011","unstructured":"Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, Kurbatova N, Lukk M, Malone J, Manikkam M, Maslen J, Mukherjee G, Oezcimen A, Rocca-Serra P, Sansone SA, Sharma A, Spooner W, Williams E, Zhu W, Brazma A (2011) ArrayExpress update\u2013an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res 39:D1002\u2013D1004. https:\/\/doi.org\/10.1093\/nar\/gkq1040","journal-title":"Nucleic Acids Res"},{"key":"10716_CR44","first-page":"2825","volume":"12","author":"F Pedregosa","year":"2011","unstructured":"Pedregosa F, Varoquaux G, Gramfort A, Michel V, Thirion B, Grisel O, Blondel M, Prettenhofer P, Weiss R, Dubourg V, Vanderplas J, Passos A, Cournapeau D, Brucher M, Perrot M, Duchesnay E (2011) Scikit-learn: machine learning in Python. J Mach Learn Res 12:2825\u20132830","journal-title":"J Mach Learn Res"},{"key":"10716_CR45","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.175","volume":"1","author":"HA Piwowar","year":"2013","unstructured":"Piwowar HA, Vision TJ (2013) Data reuse and the open data citation advantage. PeerJ 1:e175. https:\/\/doi.org\/10.7717\/peerj.175","journal-title":"PeerJ"},{"key":"10716_CR46","doi-asserted-by":"publisher","first-page":"2237","DOI":"10.1242\/jeb.01016","volume":"207","author":"JE Podrabsky","year":"2004","unstructured":"Podrabsky JE, Somero GN (2004) Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus. J Exp Biol 207:2237\u20132254. https:\/\/doi.org\/10.1242\/jeb.01016","journal-title":"J Exp Biol"},{"key":"10716_CR47","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1007\/s001140100216","volume":"88","author":"HO Portner","year":"2001","unstructured":"Portner HO (2001) Climate change and temperature-dependent biogeography: oxygen limitation of thermal tolerance in animals. Naturwissenschaften 88:137\u2013146. https:\/\/doi.org\/10.1007\/s001140100216","journal-title":"Naturwissenschaften"},{"key":"10716_CR48","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1126\/science.1163156","volume":"322","author":"HO Portner","year":"2008","unstructured":"Portner HO, Farrell AP (2008) Physiology and climate change. Science 322:690\u2013692. https:\/\/doi.org\/10.1126\/science.1163156","journal-title":"Science"},{"key":"10716_CR49","doi-asserted-by":"publisher","first-page":"W191","DOI":"10.1093\/nar\/gkz369","volume":"47","author":"U Raudvere","year":"2019","unstructured":"Raudvere U, Kolberg L, Kuzmin I, Arak T, Adler P, Peterson H, Vilo J (2019) g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). Nucleic Acids Res 47:W191\u2013W198. https:\/\/doi.org\/10.1093\/nar\/gkz369","journal-title":"Nucleic Acids Res"},{"key":"10716_CR50","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1038\/s41580-018-0096-9","volume":"20","author":"H Reinke","year":"2019","unstructured":"Reinke H, Asher G (2019) Crosstalk between metabolism and circadian clocks. Nat Rev Mol Cell Biol 20:227\u2013241. https:\/\/doi.org\/10.1038\/s41580-018-0096-9","journal-title":"Nat Rev Mol Cell Biol"},{"key":"10716_CR51","doi-asserted-by":"publisher","first-page":"3028","DOI":"10.3390\/ijms22063028","volume":"22","author":"J Ren","year":"2021","unstructured":"Ren J, Long Y, Liu R, Song G, Li Q, Cui Z (2021) Characterization of biological pathways regulating acute cold resistance of zebrafish. Int J Mol Sci 22:3028. https:\/\/doi.org\/10.3390\/ijms22063028","journal-title":"Int J Mol Sci"},{"key":"10716_CR52","doi-asserted-by":"publisher","first-page":"807","DOI":"10.1081\/CBI-120014569","volume":"19","author":"L Rensing","year":"2002","unstructured":"Rensing L, Ruoff P (2002) Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases. Chronobiol Int 19:807\u2013864. https:\/\/doi.org\/10.1081\/CBI-120014569","journal-title":"Chronobiol Int"},{"key":"10716_CR53","doi-asserted-by":"publisher","first-page":"561","DOI":"10.1042\/BJ20040757","volume":"381","author":"MH Rider","year":"2004","unstructured":"Rider MH, Bertrand L, Vertommen D, Michels PA, Rousseau GG, Hue L (2004) 6-Phosphofructo-2-kinase\/fructose-2,6-bisphosphatase: head-to-head with a bifunctional enzyme that controls glycolysis. Biochem J 381:561\u2013579. https:\/\/doi.org\/10.1042\/BJ20040757","journal-title":"Biochem J"},{"key":"10716_CR54","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1038\/nrg3394","volume":"14","author":"J Rung","year":"2013","unstructured":"Rung J, Brazma A (2013) Reuse of public genome-wide gene expression data. Nat Rev Genet 14:89\u201399. https:\/\/doi.org\/10.1038\/nrg3394","journal-title":"Nat Rev Genet"},{"key":"10716_CR55","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-1-4614-8289-5_1","volume":"793","author":"JM Salvador","year":"2013","unstructured":"Salvador JM, Brown-Clay JD, Fornace AJ (2013) Gadd45 in stress signaling, cell cycle control, and apoptosis. Adv Exp Med Biol 793:1\u201319. https:\/\/doi.org\/10.1007\/978-1-4614-8289-5_1","journal-title":"Adv Exp Med Biol"},{"key":"10716_CR56","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1242\/jeb.089722","volume":"217","author":"PM Schulte","year":"2014","unstructured":"Schulte PM (2014) What is environmental stress? Insights from fish living in a variable environment. J Exp Biol 217:23\u201334. https:\/\/doi.org\/10.1242\/jeb.089722","journal-title":"J Exp Biol"},{"key":"10716_CR57","doi-asserted-by":"publisher","first-page":"1856","DOI":"10.1242\/jeb.118851","volume":"218","author":"PM Schulte","year":"2015","unstructured":"Schulte PM (2015) The effects of temperature on aerobic metabolism: towards a mechanistic understanding of the responses of ectotherms to a changing environment. J Exp Biol 218:1856\u20131866. https:\/\/doi.org\/10.1242\/jeb.118851","journal-title":"J Exp Biol"},{"key":"10716_CR58","doi-asserted-by":"publisher","unstructured":"Segev-Hadar A, Krispin S, Olthof AM, Hyatt KC, Haller L, Barki A, Nitzan T, Levkowitz G, Kanadia RN, Cnaani A, Biran J (2021) Oxytocin signaling regulates the homeostatic response to cold stress in poikilothermic vertebrates. bioRxiv.\u00a0https:\/\/doi.org\/10.1101\/2021.12.20.472748","DOI":"10.1101\/2021.12.20.472748"},{"key":"10716_CR59","doi-asserted-by":"publisher","first-page":"E131","DOI":"10.1038\/ncb0502-e131","volume":"4","author":"E Shaulian","year":"2002","unstructured":"Shaulian E, Karin M (2002) AP-1 as a regulator of cell life and death. Nat Cell Biol 4:E131\u2013E136. https:\/\/doi.org\/10.1038\/ncb0502-e131","journal-title":"Nat Cell Biol"},{"key":"10716_CR60","doi-asserted-by":"publisher","first-page":"912","DOI":"10.1242\/jeb.037473","volume":"213","author":"GN Somero","year":"2010","unstructured":"Somero GN (2010) The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine winners and losers. J Exp Biol 213:912\u2013920. https:\/\/doi.org\/10.1242\/jeb.037473","journal-title":"J Exp Biol"},{"key":"10716_CR61","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1080\/713610925","volume":"11","author":"DR Tocher","year":"2003","unstructured":"Tocher DR (2003) Metabolism and functions of lipids and fatty acids in teleost fish. Rev Fish Sci 11:107\u2013184. https:\/\/doi.org\/10.1080\/713610925","journal-title":"Rev Fish Sci"},{"key":"10716_CR62","doi-asserted-by":"publisher","first-page":"971","DOI":"10.1242\/jeb.038034","volume":"213","author":"L Tomanek","year":"2010","unstructured":"Tomanek L (2010) Variation in the heat shock response and its implication for predicting the effect of global climate change on species\u2019 biogeographical distribution ranges and metabolic costs. J Exp Biol 213:971\u2013979. https:\/\/doi.org\/10.1242\/jeb.038034","journal-title":"J Exp Biol"},{"key":"10716_CR63","doi-asserted-by":"publisher","first-page":"1366","DOI":"10.1016\/j.dci.2011.07.002","volume":"35","author":"L Tort","year":"2011","unstructured":"Tort L (2011) Stress and immune modulation in fish. Dev Comp Immunol 35:1366\u20131375. https:\/\/doi.org\/10.1016\/j.dci.2011.07.002","journal-title":"Dev Comp Immunol"},{"key":"10716_CR64","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1038\/s41592-019-0686-2","volume":"17","author":"P Virtanen","year":"2020","unstructured":"Virtanen P, Gommers R, Oliphant TE, Haberland M, Reddy T, Cournapeau D, Burovski E, Peterson P, Weckesser W, Bright J, van der Walt SJ, Brett M, Wilson J, Millman KJ, Mayorov N, Nelson ARJ, Jones E, Kern R, Larson E, Carey CJ, Polat I, Feng Y, Moore EW, VanderPlas J, Laxalde D, Perktold J, Cimrman R, Henriksen I, Quintero EA, Harris CR, Archibald AM, Ribeiro AH, Pedregosa F, van Mulbregt P, SciPy 1.0 Contributors (2020) SciPy 1.0: fundamental algorithms for scientific computing in Python. Nat Methods 17:261\u2013272. https:\/\/doi.org\/10.1038\/s41592-019-0686-2","journal-title":"Nat Methods"},{"key":"10716_CR65","doi-asserted-by":"publisher","first-page":"721","DOI":"10.3390\/life13030721","volume":"13","author":"Y Wang","year":"2023","unstructured":"Wang Y, Chen Z, Wei M, Lin Z, Shen M, Zhu F (2023) Liver transcriptome analysis of the black porgy Acanthopagrus schlegelii under acute low-temperature stress. Life 13:721. https:\/\/doi.org\/10.3390\/life13030721","journal-title":"Life"},{"key":"10716_CR66","doi-asserted-by":"publisher","first-page":"28","DOI":"10.2307\/2332510","volume":"34","author":"BL Welch","year":"1947","unstructured":"Welch BL (1947) The generalization of Student\u2019s problem when several different population variances are involved. Biometrika 34:28\u201335. https:\/\/doi.org\/10.2307\/2332510","journal-title":"Biometrika"},{"key":"10716_CR67","doi-asserted-by":"publisher","first-page":"160018","DOI":"10.1038\/sdata.2016.18","volume":"3","author":"MD Wilkinson","year":"2016","unstructured":"Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJG, Groth P, Goble C, Grethe JS, Heringa J, Hoen PAC, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B (2016) The FAIR guiding principles for scientific data management and stewardship. Sci Data 3:160018. https:\/\/doi.org\/10.1038\/sdata.2016.18","journal-title":"Sci Data"},{"key":"10716_CR68","doi-asserted-by":"publisher","first-page":"1212","DOI":"10.1038\/ng.3098","volume":"46","author":"P Xu","year":"2014","unstructured":"Xu P, Zhang X, Wang X, Li J, Liu G, Kuang Y, Xu J, Zheng X, Ren L, Wang G, Zhang Y, Huo L, Zhao Z, Cao D, Lu C, Li C, Zhou Y, Liu Z, Fan Z, Shan G, Li X, Wu S, Song L, Hou G, Jiang Y, Jeney Z, Yu D, Wang L, Shao C, Song L, Sun J, Ji P, Wang J, Li Q, Xu L, Sun F, Feng J, Wang C, Wang S, Wang B, Li Y, Zhu Y, Xue W, Zhao L, Wang J, Gu Y, Lv W, Wu K, Xiao J, Wu J, Zhang Z, Yu J, Sun X (2014) Genome sequence and genetic diversity of the common carp, Cyprinus carpio. Nat Genet 46:1212\u20131219. https:\/\/doi.org\/10.1038\/ng.3098","journal-title":"Nat Genet"},{"key":"10716_CR69","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz966","author":"AD Yates","year":"2020","unstructured":"Yates AD, Achuthan P, Akanni W, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Marugan JC, Cummins C, Davidson C, Dodiya K, Fatima R, Gall A, Giron CG, Gil L, Grego T, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, Kay M, Lavidas I, Le T, Lemos D, Martinez JG, Maurel T, McDowall M, McMahon A, Mohanan S, Moore B, Nuhn M, Oheh DN, Parker A, Parton A, Patricio M, Sakthivel MP, Abdul Salam AI, Schmitt BM, Schuilenburg H, Sheppard D, Sycheva M, Szuba M, Taylor K, Thormann A, Threadgold G, Vullo A, Walts B, Winterbottom A, Zadissa A, Chakiachvili M, Flint B, Frankish A, Hunt SE, IIsley G, Kostadima M, Langridge N, Loveland JE, Martin FJ, Morales J, Mudge JM, Muffato M, Perry E, Ruffier M, Trevanion SJ, Cunningham F, Howe KL, Zerbino DR, Flicek P (2020) Ensembl 2020. Nucleic Acids Res. https:\/\/doi.org\/10.1093\/nar\/gkz966","journal-title":"Nucleic Acids Res"},{"key":"10716_CR70","doi-asserted-by":"publisher","first-page":"1145","DOI":"10.1016\/j.fsi.2018.10.023","volume":"84","author":"T Zhou","year":"2019","unstructured":"Zhou T, Gui L, Liu M, Li W, Hu P, Duarte DFC, Niu H, Chen L (2019) Transcriptomic responses to low temperature stress in the Nile tilapia, Oreochromis niloticus. Fish Shellfish Immunol 84:1145\u20131156. https:\/\/doi.org\/10.1016\/j.fsi.2018.10.023","journal-title":"Fish Shellfish Immunol"}],"container-title":["Marine Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10126-026-10716-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10126-026-10716-0","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10126-026-10716-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T18:02:37Z","timestamp":1793296957000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10126-026-10716-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,10]]},"references-count":70,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["10716"],"URL":"https:\/\/doi.org\/10.1007\/s10126-026-10716-0","relation":{},"ISSN":["1436-2228","1436-2236"],"issn-type":[{"value":"1436-2228","type":"print"},{"value":"1436-2236","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,10]]},"assertion":[{"value":"15 August 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 September 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"10 October 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Not applicable. This study reanalyzed publicly available data and involved no new animal experiment.","order":1,"name":"Ethics","label":"Ethics Approval","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"167"}}