{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,11]],"date-time":"2026-07-11T08:34:45Z","timestamp":1783758885463,"version":"3.55.0"},"reference-count":43,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2014,6,3]],"date-time":"2014-06-03T00:00:00Z","timestamp":1401753600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Funct Integr Genomics"],"published-print":{"date-parts":[[2014,9]]},"DOI":"10.1007\/s10142-014-0382-3","type":"journal-article","created":{"date-parts":[[2014,6,2]],"date-time":"2014-06-02T17:49:57Z","timestamp":1401731397000},"page":"591-601","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Upregulation of transcripts for metabolism in diverse environments is a shared response associated with survival and adaptation of Klebsiella pneumoniae in response to temperature extremes"],"prefix":"10.1007","volume":"14","author":[{"given":"S.","family":"Tripathy","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Sen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S. K.","family":"Padhi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Mohanty","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N. K.","family":"Maiti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2014,6,3]]},"reference":[{"key":"382_CR1","doi-asserted-by":"crossref","first-page":"R106","DOI":"10.1186\/gb-2010-11-10-r106","volume":"11","author":"S Anders","year":"2010","unstructured":"Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11:R106","journal-title":"Genome Biol"},{"issue":"11","key":"382_CR2","doi-asserted-by":"crossref","first-page":"1399","DOI":"10.1038\/nbt1029","volume":"22","author":"F Baneyx","year":"2004","unstructured":"Baneyx F, Mujacic M (2004) Recombinant protein folding and misfolding in Escherichia coli. Nat Biotechnol 22(11):1399\u20131408","journal-title":"Nat Biotechnol"},{"key":"382_CR3","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate\u2014a practical and powerful approach to multiple testing. J R Stat Soc B 57:289\u2013300","journal-title":"J R Stat Soc B"},{"key":"382_CR4","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1016\/j.pbi.2006.01.003","volume":"9","author":"HJ Bohnert","year":"2006","unstructured":"Bohnert HJ, Gong Q, Li P, Ma S (2006) Unraveling abiotic stress tolerance mechanisms\u2014getting genomics going. Curr Opin Pl Biol 9:180\u2013188","journal-title":"Curr Opin Pl Biol"},{"key":"382_CR5","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1111\/j.1365-2958.1993.tb01727.x","volume":"9","author":"B Bukau","year":"1993","unstructured":"Bukau B (1993) Regulation of the E. coli heat shock response. Mol Microbiol 9:671\u2013680","journal-title":"Mol Microbiol"},{"key":"382_CR6","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1201\/9781482283440","volume-title":"In: Molecular chaperones and folding catalysts\u2014regulation, cellular function and mechanisms","author":"B Bukau","year":"1999","unstructured":"Bukau B (1999) In: Molecular chaperones and folding catalysts\u2014regulation, cellular function and mechanisms. Harwood Academic, Amsterdam, p 690"},{"issue":"5\u20136","key":"382_CR7","doi-asserted-by":"crossref","first-page":"429","DOI":"10.3109\/08830189909088492","volume":"18","author":"FW Chen","year":"1999","unstructured":"Chen FW, Ioannou YA (1999) Ribosomal proteins in cell proliferation and apoptosis. Int Rev Immunol 18(5\u20136):429\u2013448","journal-title":"Int Rev Immunol"},{"issue":"5","key":"382_CR8","doi-asserted-by":"crossref","first-page":"1817","DOI":"10.1128\/JB.188.5.1817-1828.2006","volume":"188","author":"SR Chhabra","year":"2006","unstructured":"Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z, Hadi MZ, Hazen TC, Wall JD, Zhou J, Arkin AP, Singh AK (2006) Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol 188(5):1817\u20131828","journal-title":"J Bacteriol"},{"key":"382_CR9","unstructured":"Connolly L, Yura T, Gross CA (1999) Autoregulation of the heat shock response in prokaryotes. In: Bukau, B. (Ed.), Molecular chaperones and folding catalysts. Regulation, cellular function and mechanism, Harwood Academic, Amsterdam, pp 13\u201333"},{"key":"382_CR10","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1016\/S0167-7012(02)00155-0","volume":"52","author":"TJ Denich","year":"2003","unstructured":"Denich TJ, Beaudette LA, Lee H, Trevors JT (2003) Effect of selected environmental and physico-chemical factors on bacterial cytoplasmatic membranes. J Microbiological Methods 52:149","journal-title":"J Microbiological Methods"},{"key":"382_CR11","doi-asserted-by":"crossref","unstructured":"Dunfield PF (2009) Methanotrophy in extreme environments. In: eLS. Wiley, Chichester. http:\/\/www.els.net . doi: 10.1002\/9780470015902.a0021897","DOI":"10.1002\/9780470015902.a0021897"},{"issue":"22","key":"382_CR12","doi-asserted-by":"crossref","first-page":"7796","DOI":"10.1128\/JB.186.22.7796-7803.2004","volume":"186","author":"H Gao","year":"2004","unstructured":"Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E, Arkin A, Thompson DK, Zhou J (2004) Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J Bacteriol 186(22):7796\u20137803","journal-title":"J Bacteriol"},{"key":"382_CR13","doi-asserted-by":"crossref","first-page":"7982","DOI":"10.1128\/jb.175.24.7982-7989.1993","volume":"175","author":"DR Gentry","year":"1993","unstructured":"Gentry DR, Hernandez VJ, Nguyen LH, Jensen DB, Cashel M (1993) Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp. J Bacteriol 175:7982\u20137989","journal-title":"J Bacteriol"},{"key":"382_CR14","first-page":"209","volume-title":"The biology of heat shock proteins and molecular chaperones","author":"C Georgopoulos","year":"1994","unstructured":"Georgopoulos C, Liberek K, Zylicz M, Ang D (1994) Properties of the heat shock proteins of Escherichia coli and the autoregulation of the heat shock response. In: Morimoto RI, Tissieres A, Georgopoulos C (eds) The biology of heat shock proteins and molecular chaperones. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp 209\u2013250"},{"key":"382_CR15","doi-asserted-by":"crossref","first-page":"4611","DOI":"10.1128\/jb.178.15.4611-4619.1996","volume":"178","author":"P Graumann","year":"1996","unstructured":"Graumann P, Schroder K, Schmid R, Marahiel MA (1996) Cold shock stress-induced proteins in Bacillus subtilis. J Bacteriol 178:4611\u20134619","journal-title":"J Bacteriol"},{"key":"382_CR16","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/0163-7827(90)90002-3","volume":"29","author":"JR Hazel","year":"1990","unstructured":"Hazel JR, Williams EE (1990) The role of alterations in membrane lipid composition in enabling physiological adaptation of organisms to their physical environment. Prog Lipid Res 29:167","journal-title":"Prog Lipid Res"},{"key":"382_CR17","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1111\/j.1574-6976.2010.00240.x","volume":"34","author":"N Joly","year":"2010","unstructured":"Joly N, Engl C, Jovanovic G, Huvet M, Toni T, Sheng X, Stumf MPH, Buck M (2010) Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology. FEMS Microbiol Rev 34:797\u2013827","journal-title":"FEMS Microbiol Rev"},{"key":"382_CR18","doi-asserted-by":"crossref","first-page":"811","DOI":"10.1111\/j.1365-2958.1994.tb00359.x","volume":"11","author":"PG Jones","year":"1994","unstructured":"Jones PG, Inouye M (1994) The cold shock response\u2014a hot topic. Mol Microbiol 11:811\u2013818","journal-title":"Mol Microbiol"},{"key":"382_CR19","doi-asserted-by":"crossref","first-page":"2092","DOI":"10.1128\/jb.169.5.2092-2095.1987","volume":"169","author":"PG Jones","year":"1987","unstructured":"Jones PG, VanBogelen RA, Neidhardt FC (1987) Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol 169:2092\u20132095","journal-title":"J Bacteriol"},{"key":"382_CR20","first-page":"1","volume":"364","author":"S Jozefczuk","year":"2010","unstructured":"Jozefczuk S, Klie S, Catchpole G, Szymanski J, Cuadros-Inostroza A, Steinhauser D, Selbig J, Willmitzer L (2010) Metabolomic and transcriptomic stress response of Escherichia coli. Mol Sys Biol 364:1\u201316","journal-title":"Mol Sys Biol"},{"key":"382_CR21","doi-asserted-by":"crossref","first-page":"3441","DOI":"10.1099\/00221287-148-11-3441","volume":"148","author":"T Kaan","year":"2002","unstructured":"Kaan T, Homuth G, Mader U, Bandow J, Schweder T (2002) Genome-wide transcriptional profiling of the Bacillus subtilis cold-shock response. Microbiology 148:3441\u20133455","journal-title":"Microbiology"},{"key":"382_CR22","first-page":"402","volume":"25","author":"KJ Livak","year":"2001","unstructured":"Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-\u0394\u0394Ct method. Methods-Elseveir Science (USA) 25:402\u2013408","journal-title":"Methods-Elseveir Science (USA)"},{"issue":"5","key":"382_CR23","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1016\/j.tim.2005.03.008","volume":"13","author":"LU Magnusson","year":"2005","unstructured":"Magnusson LU, Farewell A, Nystrom T (2005) ppGpp: A global regulator in Escherichia coli. Trends Microbiol 13(5):236\u2013242","journal-title":"Trends Microbiol"},{"key":"382_CR24","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1111\/j.1749-6632.1963.tb13664.x","volume":"102","author":"J Mandelstam","year":"1963","unstructured":"Mandelstam J (1963) Protein turnover and its function in economy of cell. Ann New York Acad Sci 102:621","journal-title":"Ann New York Acad Sci"},{"key":"382_CR25","first-page":"8934","volume":"28","author":"R Mendelsohn","year":"1989","unstructured":"Mendelsohn R, Davies MA, Brauner JW, Schuster HF, Dluhy RA (1989) Quantitative determination of conformational disorder in the acyl chains of phospholipid bilayers by infrared spectroscopy. Biogeosciences 28:8934","journal-title":"Biogeosciences"},{"key":"382_CR26","doi-asserted-by":"crossref","first-page":"6934","DOI":"10.1093\/emboj\/18.24.6934","volume":"18","author":"A Mogk","year":"1999","unstructured":"Mogk A, Tomoyasu T, Goloubinoff P, Rudiger S, Roder D, Langen H, Bukau B (1999) Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB. The EMBO J 18:6934\u20136949","journal-title":"The EMBO J"},{"key":"382_CR27","doi-asserted-by":"crossref","first-page":"W182","DOI":"10.1093\/nar\/gkm321","volume":"35","author":"Y Moriya","year":"2007","unstructured":"Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M (2007) KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 35:W182\u2013W185","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"382_CR28","doi-asserted-by":"crossref","first-page":"e4367","DOI":"10.1371\/journal.pone.0004367","volume":"4","author":"J Oberto","year":"2009","unstructured":"Oberto J, Nabti S, Jooste V, Mignot H, Rouviere-Yaniv J (2009) The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction. PLoS ONE 4(2):e4367. doi: 10.1371\/journal.pone.0004367","journal-title":"PLoS ONE"},{"key":"382_CR29","first-page":"125","volume":"6","author":"S Phadtare","year":"2004","unstructured":"Phadtare S (2004) Recent developments in bacterial cold-shock response. Curr Issues Mol Biol 6:125\u2013136","journal-title":"Curr Issues Mol Biol"},{"key":"382_CR30","first-page":"33","volume-title":"The bacterial stress responses","author":"S Phadtare","year":"2000","unstructured":"Phadtare S, Yamanaka K, Inouye M (2000) The cold shock response. In: Storz G, Hengge-Aronis R (eds) The bacterial stress responses. ASM, Washington DC, pp 33\u201345"},{"issue":"8","key":"382_CR31","doi-asserted-by":"crossref","first-page":"1924","DOI":"10.1111\/j.1462-2920.2011.02436.x","volume":"13","author":"F Plette","year":"2011","unstructured":"Plette F, Struvay C, Feller G (2011) The protein folding challenge in psychrophiles: facts and current issues. Environ Microbiol 13(8):1924\u20131933","journal-title":"Environ Microbiol"},{"key":"382_CR32","doi-asserted-by":"crossref","first-page":"3821","DOI":"10.1093\/nar\/27.19.3821","volume":"27","author":"CS Richmond","year":"1999","unstructured":"Richmond CS, Glasner JD, Mau R, Jin H, Blattner FR (1999) Genome wide expression profiling in Escherichia coli K-12. Nucleic Acids Res 27:3821\u20133835","journal-title":"Nucleic Acids Res"},{"key":"382_CR33","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1111\/j.1749-6632.1998.tb08988.x","volume":"851","author":"G Segal","year":"1998","unstructured":"Segal G, Ron EZ (1998) Regulation of heat-shock response in bacteria. Ann New York Acad Sci 851:147\u2013151","journal-title":"Ann New York Acad Sci"},{"key":"382_CR34","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1007\/s00018-008-7458-y","volume":"65","author":"I Shamovsky","year":"2008","unstructured":"Shamovsky I, Nudler E (2008) New insights into the mechanism of heat shock response activation. Cel Mol Lif Sci 65:855\u2013861","journal-title":"Cel Mol Lif Sci"},{"key":"382_CR35","doi-asserted-by":"crossref","first-page":"1081","DOI":"10.1128\/jb.174.4.1081-1085.1992","volume":"174","author":"C Squires","year":"1992","unstructured":"Squires C, Squires CL (1992) The Clp proteins\u2014proteolysis regulators or molecular chaperones? J Bacteriol 174:1081\u20131085","journal-title":"J Bacteriol"},{"key":"382_CR36","doi-asserted-by":"crossref","first-page":"2009","DOI":"10.1128\/JB.185.6.2009-2016.2003","volume":"185","author":"A Stintzi","year":"2003","unstructured":"Stintzi A (2003) Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185:2009\u20132016","journal-title":"J Bacteriol"},{"key":"382_CR37","doi-asserted-by":"crossref","first-page":"5165","DOI":"10.1128\/JB.180.19.5165-5172.1998","volume":"180","author":"JG Thomas","year":"1998","unstructured":"Thomas JG, Baneyx F (1998) Roles of the Escherichia coli small heat shock proteins IbpA and IbpB in thermal stress management: comparison with ClpA, ClpB, and HtpG in vivo. J Bacteriol 180:5165\u20135172","journal-title":"J Bacteriol"},{"issue":"6","key":"382_CR38","doi-asserted-by":"crossref","first-page":"1360","DOI":"10.1046\/j.1365-2958.2000.01951.x","volume":"36","author":"JG Thomas","year":"2000","unstructured":"Thomas JG, Baneyx F (2000) ClpB and HtpG facilitate de novo protein folding in stressed Escherichia coli cells. Mol Microbiol 36(6):1360\u20131370","journal-title":"Mol Microbiol"},{"key":"382_CR39","doi-asserted-by":"crossref","first-page":"5589","DOI":"10.1073\/pnas.87.15.5589","volume":"87","author":"RA VanBogelen","year":"1990","unstructured":"VanBogelen RA, Neidhardt FC (1990) Ribosomes as sensors of heat and cold shock in Escherichia coli. Proc Natl Acad Sci U S A 87:5589\u20135593","journal-title":"Proc Natl Acad Sci U S A"},{"key":"382_CR40","author":"L Wang","year":"2012","unstructured":"Wang L, Schumann U, Liu Y, Prokopchuk O, Steinacker JM (2012) Heat shock protein 70 (Hsp70) inhibits oxidative phosphorylation and compensates ATP balance through enhanced glycolytic activity. J App Physiol. doi: 10.1152\/japplphysiol.00658.2012","journal-title":"J App Physiol"},{"issue":"21","key":"382_CR41","doi-asserted-by":"crossref","first-page":"6306","DOI":"10.1093\/nar\/gkg841","volume":"31","author":"J Weiner III","year":"2003","unstructured":"Weiner J III, Zimmerman CU, Gohlmann HWH, Hermann R (2003) Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31(21):6306\u20136320","journal-title":"Nucleic Acids Res"},{"key":"382_CR42","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1042\/bj1030453","volume":"103","author":"NS Willetts","year":"1967","unstructured":"Willetts NS (1967) Intracellular protein breakdown in non-growing cells of Escherichia coli. Biochem J 103:453","journal-title":"Biochem J"},{"issue":"21","key":"382_CR43","doi-asserted-by":"crossref","first-page":"6803","DOI":"10.1073\/pnas.81.21.6803","volume":"81","author":"T Yura","year":"1984","unstructured":"Yura T, Tobe T, Ito K, Osawa T (1984) Heat shock regulatory gene (htpR) of Escherichia coli is required for growth at high temperature but is indispensable at low temperature. Proc Natl Acad Sci U S A 81(21):6803\u20136807, PMID: 6387714","journal-title":"Proc Natl Acad Sci U S A"}],"container-title":["Functional & Integrative Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-014-0382-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10142-014-0382-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-014-0382-3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,27]],"date-time":"2024-05-27T07:19:31Z","timestamp":1716794371000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10142-014-0382-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,6,3]]},"references-count":43,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2014,9]]}},"alternative-id":["382"],"URL":"https:\/\/doi.org\/10.1007\/s10142-014-0382-3","relation":{},"ISSN":["1438-793X","1438-7948"],"issn-type":[{"value":"1438-793X","type":"print"},{"value":"1438-7948","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,6,3]]}}}