{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T04:10:04Z","timestamp":1719807004440},"reference-count":48,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2018,2,10]],"date-time":"2018-02-10T00:00:00Z","timestamp":1518220800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Funct Integr Genomics"],"published-print":{"date-parts":[[2018,5]]},"DOI":"10.1007\/s10142-018-0589-9","type":"journal-article","created":{"date-parts":[[2018,2,10]],"date-time":"2018-02-10T10:42:58Z","timestamp":1518259378000},"page":"277-285","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["An ex vivo ruminal ovine model to study the immediate immune response in the context of bacterial lipopolysaccharide"],"prefix":"10.1007","volume":"18","author":[{"given":"Fathi","family":"Abouhajer","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Saeed","family":"El-Ashram","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Musafiri","family":"Karama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shujian","family":"Huang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jian-Feng","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,2,10]]},"reference":[{"issue":"7","key":"589_CR1","doi-asserted-by":"publisher","first-page":"e0159194","DOI":"10.1371\/journal.pone.0159194","volume":"11","author":"CA Alvarez Rojas","year":"2016","unstructured":"Alvarez Rojas CA, Scheerlinck JP, Ansell BR, Hall RS, Gasser RB, Jex AR (2016) Time-course study of the transcriptome of peripheral blood mononuclear cells (PBMCs) from sheep infected with Fasciola hepatica. PLoS One 11(7):e0159194. https:\/\/doi.org\/10.1371\/journal.pone.0159194","journal-title":"PLoS One"},{"issue":"5","key":"589_CR2","doi-asserted-by":"publisher","first-page":"1321","DOI":"10.1007\/s00726-010-0574-7","volume":"39","author":"GM Ashraf","year":"2010","unstructured":"Ashraf GM, Rizvi S, Naqvi S, Suhail N, Bilal N, Hasan S, Tabish M, Banu N (2010) Purification, characterization, structural analysis and protein chemistry of a buffalo heart galectin-1. Amino Acids 39(5):1321\u20131332. https:\/\/doi.org\/10.1007\/s00726-010-0574-7","journal-title":"Amino Acids"},{"issue":"1","key":"589_CR3","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1007\/s10930-010-9300-2","volume":"30","author":"GM Ashraf","year":"2011","unstructured":"Ashraf GM, Banu N, Ahmad A, Singh LP, Kumar R (2011) Purification, characterization, sequencing and biological chemistry of galectin-1 purified from Capra hircus (goat) heart. Protein J 30(1):39\u201351. https:\/\/doi.org\/10.1007\/s10930-010-9300-2","journal-title":"Protein J"},{"key":"589_CR4","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1007\/978-3-319-08927-0_10","volume":"822","author":"GM Ashraf","year":"2015","unstructured":"Ashraf GM, Perveen A, Tabrez S, Jabir NR, Damanhouri GA, Zaidi SK, Banu N (2015a) Altered galectin glycosylation: potential factor for the diagnostics and therapeutics of various cardiovascular and neurological disorders. Adv Exp Med Biol 822:67\u201384. https:\/\/doi.org\/10.1007\/978-3-319-08927-0_10","journal-title":"Adv Exp Med Biol"},{"issue":"1","key":"589_CR5","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1016\/j.sjbs.2014.07.008","volume":"22","author":"GM Ashraf","year":"2015","unstructured":"Ashraf GM, Perveen A, Tabrez S, Zaidi SK, Kamal MA, Banu N (2015b) Studies on the role of goat heart galectin-1 as a tool for detecting post-malignant changes in glycosylation pattern. Saudi J Biol Sci 22(1):85\u201389. https:\/\/doi.org\/10.1016\/j.sjbs.2014.07.008","journal-title":"Saudi J Biol Sci"},{"issue":"1","key":"589_CR6","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1016\/j.sjbs.2014.09.018","volume":"22","author":"GM Ashraf","year":"2015","unstructured":"Ashraf GM, Perveen A, Zaidi SK, Tabrez S, Kamal MA, Banu N (2015c) Studies on the role of goat heart galectin-1 as an erythrocyte membrane perturbing agent. Saudi J Biol Sci 22(1):112\u2013116. https:\/\/doi.org\/10.1016\/j.sjbs.2014.09.018","journal-title":"Saudi J Biol Sci"},{"issue":"11","key":"589_CR7","doi-asserted-by":"publisher","first-page":"e551","DOI":"10.1371\/journal.pntd.0000551","volume":"3","author":"D Bansal","year":"2009","unstructured":"Bansal D, Ave P, Kerneis S, Frileux P, Boche O, Baglin AC, Dubost G, Leguern AS, Prevost MC, Bracha R, Mirelman D, Guillen N, Labruyere E (2009) An ex-vivo human intestinal model to study Entamoeba histolytica pathogenesis. PLoS Negl Trop Dis 3(11):e551. https:\/\/doi.org\/10.1371\/journal.pntd.0000551","journal-title":"PLoS Negl Trop Dis"},{"key":"589_CR8","doi-asserted-by":"publisher","first-page":"436","DOI":"10.4049\/jimmunol.178.1.436","volume":"178","author":"P Barrionuevo","year":"2007","unstructured":"Barrionuevo P, Beigier-Bompadre M, Ilarregui JM, Toscano MA, Bianco GA, Isturiz MA, Rabinovich GA (2007) A novel function for galectin-1 at the crossroad of innate and adaptive immunity: galectin-1 regulates monocyte\/macrophage physiology through a nonapoptotic ERK-dependent pathway. J Immunol (Baltimore, Md : 1950) 178:436\u2013445","journal-title":"J Immunol (Baltimore, Md : 1950)"},{"key":"589_CR9","doi-asserted-by":"publisher","first-page":"295","DOI":"10.1016\/j.clim.2003.08.003","volume":"109","author":"LG Baum","year":"2003","unstructured":"Baum LG, Blackall DP, Arias-Magallano S, Nanigian D, Uh SY, Browne JM, Hoffmann D, Emmanouilides CE, Territo MC, Baldwin GC (2003) Amelioration of graft versus host disease by galectin-1. Clin Immunol (Orlando, Fla) 109:295\u2013307","journal-title":"Clin Immunol (Orlando, Fla)"},{"key":"589_CR10","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57:289\u2013300","journal-title":"J R Stat Soc Ser B Methodol"},{"issue":"2","key":"589_CR11","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1089\/jir.2006.26.101","volume":"26","author":"N Bont de","year":"2006","unstructured":"de Bont N, Netea MG, Rovers C, Smilde T, Hijmans A, Demacker PN, van der Meer JW, Stalenhoef AF (2006) LPS-induced release of IL-1 beta, IL-1Ra, IL-6, and TNF-alpha in whole blood from patients with familial hypercholesterolemia: no effect of cholesterol-lowering treatment. J Interferon Cytokine Res Off J Int Soc Interferon Cytokine Res 26(2):101\u2013107. https:\/\/doi.org\/10.1089\/jir.2006.26.101","journal-title":"J Interferon Cytokine Res Off J Int Soc Interferon Cytokine Res"},{"issue":"12","key":"589_CR12","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0015798","volume":"5","author":"ON Chuang-Smith","year":"2010","unstructured":"Chuang-Smith ON, Wells CL, Henry-Stanley MJ, Dunny GM (2010) Acceleration of enterococcus faecalis biofilm formation by aggregation substance expression in an ex vivo model of cardiac valve colonization. PLoS One 5(12):e15798. https:\/\/doi.org\/10.1371\/journal.pone.0015798","journal-title":"PLoS One"},{"issue":"6","key":"589_CR13","doi-asserted-by":"publisher","first-page":"771","DOI":"10.1016\/S0952-7915(02)00408-9","volume":"14","author":"MA Curotto de Lafaille","year":"2002","unstructured":"Curotto de Lafaille MA, Lafaille JJ (2002) CD4(+) regulatory T cells in autoimmunity and allergy. Curr Opin Immunol 14(6):771\u2013778. https:\/\/doi.org\/10.1016\/S0952-7915(02)00408-9","journal-title":"Curr Opin Immunol"},{"issue":"5","key":"589_CR14","doi-asserted-by":"publisher","first-page":"e20008","DOI":"10.1371\/journal.pone.0020008","volume":"6","author":"Y Ding","year":"2011","unstructured":"Ding Y, Zou J, Li Z, Tian J, Abdelalim S, Du F, She R, Wang D, Tan C, Wang H, Chen W, Lv D, Chang L (2011) Study of histopathological and molecular changes of rat kidney under simulated weightlessness and resistance training protective effect. PLoS One 6(5):e20008. https:\/\/doi.org\/10.1371\/journal.pone.0020008","journal-title":"PLoS One"},{"key":"589_CR15","first-page":"289","volume":"3","author":"DW Dresser","year":"1960","unstructured":"Dresser DW (1960) Elimination of 131-I-labelled protein antigens from the circulation of the mouse. Immunology 3:289\u2013295","journal-title":"Immunology"},{"issue":"4794","key":"589_CR16","doi-asserted-by":"publisher","first-page":"1169","DOI":"10.1038\/1911169a0","volume":"191","author":"DW Dresser","year":"1961","unstructured":"Dresser DW (1961) Effectiveness of lipid and lipidophilic substances as adjuvants. Nature 191(4794):1169\u20131171. https:\/\/doi.org\/10.1038\/1911169a0","journal-title":"Nature"},{"key":"589_CR17","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.btre.2016.10.001","volume":"12","author":"S El-Ashram","year":"2016","unstructured":"El-Ashram S, Al Nasr I, Suo X (2016) Nucleic acid protocols: extraction and optimization. Biotechnol Rep (Amsterdam, Netherlands) 12:33\u201339. https:\/\/doi.org\/10.1016\/j.btre.2016.10.001","journal-title":"Biotechnol Rep (Amsterdam, Netherlands)"},{"issue":"4","key":"589_CR18","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1007\/s11259-017-9698-5","volume":"41","author":"S El-Ashram","year":"2017","unstructured":"El-Ashram S, Al Nasr I, Abouhajer F, El-Kemary M, Huang G, Dincel G, Mehmood R, Hu M, Suo X (2017a) Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection. Vet Res Commun 41(4):263\u2013277. https:\/\/doi.org\/10.1007\/s11259-017-9698-5","journal-title":"Vet Res Commun"},{"issue":"5","key":"589_CR19","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1016\/j.parint.2017.05.007","volume":"66","author":"S El-Ashram","year":"2017","unstructured":"El-Ashram S, Al Nasr I, El-Kemary M, Mehmood R, Hu M, Suo X (2017b) Early and late gene expression profiles of the ovine mucosa in response to Haemonchus contortus infection employing Illumina RNA-seq technology. Parasitol Int 66(5):681\u2013692. https:\/\/doi.org\/10.1016\/j.parint.2017.05.007","journal-title":"Parasitol Int"},{"issue":"9","key":"589_CR20","doi-asserted-by":"publisher","first-page":"1540","DOI":"10.1038\/nprot.2010.111","volume":"5","author":"IA Graaf de","year":"2010","unstructured":"de Graaf IA, Olinga P, de Jager MH, Merema MT, de Kanter R, van de Kerkhof EG, Groothuis GM (2010) Preparation and incubation of precision-cut liver and intestinal slices for application in drug metabolism and toxicity studies. Nat Protoc 5(9):1540\u20131551. https:\/\/doi.org\/10.1038\/nprot.2010.111","journal-title":"Nat Protoc"},{"issue":"1","key":"589_CR21","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/j.canlet.2006.11.030","volume":"253","author":"SS Hasan","year":"2007","unstructured":"Hasan SS, Ashraf GM, Banu N (2007) Galectins\u2014potential targets for cancer therapy. Cancer Lett 253(1):25\u201333. https:\/\/doi.org\/10.1016\/j.canlet.2006.11.030","journal-title":"Cancer Lett"},{"key":"589_CR22","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.dci.2017.04.010","volume":"74","author":"CT Hoang","year":"2017","unstructured":"Hoang CT, Hong Y, Truong AD, Lee J, Lee K, Hong YH (2017) Molecular cloning of chicken interleukin-17B, which induces proinflammatory cytokines through activation of the NF-kappaB signaling pathway. Dev Comp Immunol 74:40\u201348. https:\/\/doi.org\/10.1016\/j.dci.2017.04.010","journal-title":"Dev Comp Immunol"},{"issue":"9","key":"589_CR23","doi-asserted-by":"publisher","first-page":"981","DOI":"10.1038\/ni.1772","volume":"10","author":"JM Ilarregui","year":"2009","unstructured":"Ilarregui JM, Croci DO, Bianco GA, Toscano MA, Salatino M, Vermeulen ME, Geffner JR, Rabinovich GA (2009) Tolerogenic signals delivered by dendritic cells to T cells through a galectin-1-driven immunoregulatory circuit involving interleukin 27 and interleukin 10. Nat Immunol 10(9):981\u2013991. https:\/\/doi.org\/10.1038\/ni.1772","journal-title":"Nat Immunol"},{"issue":"5","key":"589_CR24","doi-asserted-by":"publisher","first-page":"1576","DOI":"10.1002\/eji.200425317","volume":"35","author":"WJ Jordan","year":"2005","unstructured":"Jordan WJ, Eskdale J, Boniotto M, Lennon GP, Peat J, Campbell JD, Gallagher G (2005) Human IL-19 regulates immunity through auto-induction of IL-19 and production of IL-10. Eur J Immunol 35(5):1576\u20131582. https:\/\/doi.org\/10.1002\/eji.200425317","journal-title":"Eur J Immunol"},{"issue":"4","key":"589_CR25","doi-asserted-by":"publisher","first-page":"R36","DOI":"10.1186\/gb-2013-14-4-r36","volume":"14","author":"D Kim","year":"2013","unstructured":"Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14(4):R36. https:\/\/doi.org\/10.1186\/gb-2013-14-4-r36","journal-title":"Genome Biol"},{"key":"589_CR26","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1159\/000067596","volume":"129","author":"MK Levings","year":"2002","unstructured":"Levings MK, Bacchetta R, Schulz U, Roncarolo MG (2002) The role of IL-10 and TGF-beta in the differentiation and effector function of T regulatory cells. Int Arch Allergy Immunol 129:263\u2013276","journal-title":"Int Arch Allergy Immunol"},{"issue":"7","key":"589_CR27","doi-asserted-by":"publisher","first-page":"813","DOI":"10.1016\/j.ijpara.2008.11.007","volume":"39","author":"RW Li","year":"2009","unstructured":"Li RW, Gasbarre LC (2009) A temporal shift in regulatory networks and pathways in the bovine small intestine during Cooperia oncophora infection. Int J Parasitol 39(7):813\u2013824. https:\/\/doi.org\/10.1016\/j.ijpara.2008.11.007","journal-title":"Int J Parasitol"},{"issue":"2","key":"589_CR28","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/j.stem.2015.06.003","volume":"17","author":"X Li","year":"2015","unstructured":"Li X, Zuo X, Jing J, Ma Y, Wang J, Liu D, Zhu J, Du X, Xiong L, Du Y, Xu J, Xiao X, Wang J, Chai Z, Zhao Y, Deng H (2015) Small-molecule-driven direct reprogramming of mouse fibroblasts into functional neurons. Cell Stem Cell 17(2):195\u2013203. https:\/\/doi.org\/10.1016\/j.stem.2015.06.003","journal-title":"Cell Stem Cell"},{"issue":"4","key":"589_CR29","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1016\/j.cytogfr.2011.10.001","volume":"22","author":"G Lopez-Castejon","year":"2011","unstructured":"Lopez-Castejon G, Brough D (2011) Understanding the mechanism of IL-1\u03b2 secretion. Cytokine Growth Factor Rev 22(4):189\u2013195. https:\/\/doi.org\/10.1016\/j.cytogfr.2011.10.001","journal-title":"Cytokine Growth Factor Rev"},{"issue":"12","key":"589_CR30","doi-asserted-by":"publisher","first-page":"e82155","DOI":"10.1371\/journal.pone.0082155","volume":"8","author":"J Lv","year":"2013","unstructured":"Lv J, Liu P, Wang Y, Gao B, Chen P, Li J (2013) Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation. PLoS One 8(12):e82155. https:\/\/doi.org\/10.1371\/journal.pone.0082155","journal-title":"PLoS One"},{"issue":"9","key":"589_CR31","doi-asserted-by":"publisher","first-page":"1509","DOI":"10.1101\/gr.079558.108","volume":"18","author":"JC Marioni","year":"2008","unstructured":"Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18(9):1509\u20131517. https:\/\/doi.org\/10.1101\/gr.079558.108","journal-title":"Genome Res"},{"key":"589_CR32","doi-asserted-by":"publisher","first-page":"122","DOI":"10.3389\/fpls.2015.00122","volume":"6","author":"C Mata-Perez","year":"2015","unstructured":"Mata-Perez C, Sanchez-Calvo B, Begara-Morales JC, Luque F, Jimenez-Ruiz J, Padilla MN, Fierro-Risco J, Valderrama R, Fernandez-Ocana A, Corpas FJ, Barroso JB (2015) Transcriptomic profiling of linolenic acid-responsive genes in ROS signaling from RNA-seq data in Arabidopsis. Front Plant Sci 6:122. https:\/\/doi.org\/10.3389\/fpls.2015.00122","journal-title":"Front Plant Sci"},{"issue":"2","key":"589_CR33","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1111\/j.1365-2567.2007.02763.x","volume":"124","author":"M Muhlbauer","year":"2008","unstructured":"Muhlbauer M, Cheely AW, Yenugu S, Jobin C (2008) Regulation and functional impact of lipopolysaccharide induced Nod2 gene expression in the murine epididymal epithelial cell line PC1. Immunology 124(2):256\u2013264. https:\/\/doi.org\/10.1111\/j.1365-2567.2007.02763.x","journal-title":"Immunology"},{"issue":"5","key":"589_CR34","doi-asserted-by":"publisher","first-page":"388","DOI":"10.1038\/cmi.2011.26","volume":"8","author":"MA Nahid","year":"2011","unstructured":"Nahid MA, Satoh M, Chan EK (2011) MicroRNA in TLR signaling and endotoxin tolerance. Cell Mol Immunol 8(5):388\u2013403. https:\/\/doi.org\/10.1038\/cmi.2011.26","journal-title":"Cell Mol Immunol"},{"issue":"2","key":"589_CR35","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1007\/s00417-016-3546-0","volume":"255","author":"A Pinnock","year":"2017","unstructured":"Pinnock A, Shivshetty N, Roy S, Rimmer S, Douglas I, MacNeil S, Garg P (2017) Ex vivo rabbit and human corneas as models for bacterial and fungal keratitis. Graefes Arch Clin Exp Ophthalmol 255(2):333\u2013342. https:\/\/doi.org\/10.1007\/s00417-016-3546-0","journal-title":"Graefes Arch Clin Exp Ophthalmol"},{"issue":"1","key":"589_CR36","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1186\/1471-2164-14-223","volume":"14","author":"A Rastrojo","year":"2013","unstructured":"Rastrojo A, Carrasco-Ramiro F, Martin D, Crespillo A, Reguera RM, Aguado B, Requena JM (2013) The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq. BMC Genomics 14(1):223. https:\/\/doi.org\/10.1186\/1471-2164-14-223","journal-title":"BMC Genomics"},{"issue":"4","key":"589_CR37","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1016\/j.crohns.2008.05.009","volume":"2","author":"F Rieder","year":"2008","unstructured":"Rieder F, Fiocchi C (2008) Intestinal fibrosis in inflammatory bowel disease - current knowledge and future perspectives. J Crohn\u2019s Colitis 2(4):279\u2013290. https:\/\/doi.org\/10.1016\/j.crohns.2008.05.009","journal-title":"J Crohn\u2019s Colitis"},{"issue":"7","key":"589_CR38","doi-asserted-by":"publisher","first-page":"G786","DOI":"10.1152\/ajpgi.00059.2012","volume":"303","author":"F Rieder","year":"2012","unstructured":"Rieder F, Kessler S, Sans M, Fiocchi C (2012) Animal models of intestinal fibrosis: new tools for the understanding of pathogenesis and therapy of human disease. Am J Physiol Gastrointest Liver Physiol 303(7):G786\u2013G801. https:\/\/doi.org\/10.1152\/ajpgi.00059.2012","journal-title":"Am J Physiol Gastrointest Liver Physiol"},{"issue":"17","key":"589_CR39","doi-asserted-by":"publisher","first-page":"17005","DOI":"10.1074\/jbc.M412584200","volume":"280","author":"A Schoenemeyer","year":"2005","unstructured":"Schoenemeyer A, Barnes BJ, Mancl ME, Latz E, Goutagny N, Pitha PM, Fitzgerald KA, Golenbock DT (2005) The interferon regulatory factor, IRF5, is a central mediator of toll-like receptor 7 signaling. J Biol Chem 280(17):17005\u201317012. https:\/\/doi.org\/10.1074\/jbc.M412584200","journal-title":"J Biol Chem"},{"issue":"10","key":"589_CR40","doi-asserted-by":"publisher","first-page":"434","DOI":"10.1016\/j.pt.2011.05.006","volume":"27","author":"TN Siegel","year":"2011","unstructured":"Siegel TN, Gunasekera K, Cross GA, Ochsenreiter T (2011) Gene expression in Trypanosoma brucei: lessons from high-throughput RNA sequencing. Trends Parasitol 27(10):434\u2013441. https:\/\/doi.org\/10.1016\/j.pt.2011.05.006","journal-title":"Trends Parasitol"},{"key":"589_CR41","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.livsci.2017.01.006","volume":"197","author":"JJ Simoni Gouveia de","year":"2017","unstructured":"de Simoni Gouveia JJ, Paiva SR, McManus CM, Caetano AR, Kijas JW, Fac\u00f3 O, Azevedo HC, de Araujo AM, de Souza CJH, Yamagishi MEB, Carneiro PLS, Braga L\u00f4bo RN, de Oliveira SMP, da Silva MVGB (2017) Genome-wide search for signatures of selection in three major Brazilian locally adapted sheep breeds. Livest Sci 197:36\u201345. https:\/\/doi.org\/10.1016\/j.livsci.2017.01.006","journal-title":"Livest Sci"},{"issue":"1","key":"589_CR42","doi-asserted-by":"publisher","first-page":"216","DOI":"10.1111\/j.1600-065X.2012.01167.x","volume":"250","author":"DH Song","year":"2012","unstructured":"Song DH, Lee JO (2012) Sensing of microbial molecular patterns by Toll-like receptors. Immunol Rev 250(1):216\u2013229. https:\/\/doi.org\/10.1111\/j.1600-065X.2012.01167.x","journal-title":"Immunol Rev"},{"issue":"Suppl 4","key":"589_CR43","doi-asserted-by":"publisher","first-page":"397","DOI":"10.2527\/jas.53924","volume":"90","author":"Sugiharto","year":"2012","unstructured":"Sugiharto, Jensen BB, Lauridsen C (2012) Development of an ex vivo model for investigating the bacterial association to the gut epithelium of pigs. J Anim Sci 90(Suppl 4):397\u2013399. https:\/\/doi.org\/10.2527\/jas.53924","journal-title":"J Anim Sci"},{"issue":"8","key":"589_CR44","doi-asserted-by":"publisher","first-page":"2477","DOI":"10.1002\/eji.200526151","volume":"35","author":"F Takeshita","year":"2005","unstructured":"Takeshita F, Ishii KJ, Kobiyama K, Kojima Y, Coban C, Sasaki S, Ishii N, Klinman DM, Okuda K, Akira S, Suzuki K (2005) TRAF4 acts as a silencer in TLR-mediated signaling through the association with TRAF6 and TRIF. Eur J Immunol 35(8):2477\u20132485. https:\/\/doi.org\/10.1002\/eji.200526151","journal-title":"Eur J Immunol"},{"issue":"1","key":"589_CR45","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1186\/s12864-015-1384-9","volume":"16","author":"C Wei","year":"2015","unstructured":"Wei C, Wang H, Liu G, Wu M, Cao J, Liu Z, Liu R, Zhao F, Zhang L, Lu J, Liu C, Du L (2015) Genome-wide analysis reveals population structure and selection in Chinese indigenous sheep breeds. BMC Genomics 16(1):194. https:\/\/doi.org\/10.1186\/s12864-015-1384-9","journal-title":"BMC Genomics"},{"issue":"suppl_2","key":"589_CR46","doi-asserted-by":"publisher","first-page":"W316","DOI":"10.1093\/nar\/gkr483","volume":"39","author":"C Xie","year":"2011","unstructured":"Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L (2011) KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res 39(suppl_2):W316\u2013W322. https:\/\/doi.org\/10.1093\/nar\/gkr483","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"589_CR47","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1007\/s11103-005-5102-x","volume":"58","author":"Y Yao","year":"2005","unstructured":"Yao Y, Ni Z, Zhang Y, Chen Y, Ding Y, Han Z, Liu Z, Sun Q (2005) Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction. Plant Mol Biol 58(3):367\u2013384. https:\/\/doi.org\/10.1007\/s11103-005-5102-x","journal-title":"Plant Mol Biol"},{"issue":"2","key":"589_CR48","doi-asserted-by":"publisher","first-page":"R14","DOI":"10.1186\/gb-2010-11-2-r14","volume":"11","author":"MD Young","year":"2010","unstructured":"Young MD, Wakefield MJ, Smyth GK, Oshlack A (2010) Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 11(2):R14. https:\/\/doi.org\/10.1186\/gb-2010-11-2-r14","journal-title":"Genome Biol"}],"container-title":["Functional &amp; Integrative Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10142-018-0589-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-018-0589-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-018-0589-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T03:34:42Z","timestamp":1719804882000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10142-018-0589-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,2,10]]},"references-count":48,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2018,5]]}},"alternative-id":["589"],"URL":"https:\/\/doi.org\/10.1007\/s10142-018-0589-9","relation":{},"ISSN":["1438-793X","1438-7948"],"issn-type":[{"value":"1438-793X","type":"print"},{"value":"1438-7948","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,2,10]]},"assertion":[{"value":"14 July 2017","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 December 2017","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 January 2018","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"10 February 2018","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Animal experiments were conducted in accordance with the guidelines of Beijing Municipality on the Review of Welfare and Ethics of Laboratory Animals approved by the Beijing Municipality Administration Office of Laboratory Animals (BAOLA), and under the protocol (CAU-AEC-2010\u20130603) approved by the China Agricultural University Animal Ethics Committee. All experimental procedures were also approved by the Institutional Animal Care and Committee of China Agricultural University (The certificate of Beijing Laboratory Animal employee, ID: 15883).","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no conflict of interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}]}}