{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T20:35:12Z","timestamp":1792614912612,"version":"4.5.0"},"reference-count":124,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2025,5,29]],"date-time":"2025-05-29T00:00:00Z","timestamp":1748476800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,5,29]],"date-time":"2025-05-29T00:00:00Z","timestamp":1748476800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Funct Integr Genomics"],"published-print":{"date-parts":[[2025,12]]},"DOI":"10.1007\/s10142-025-01620-2","type":"journal-article","created":{"date-parts":[[2025,5,28]],"date-time":"2025-05-28T23:35:14Z","timestamp":1748475314000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Decoding fungal communication networks: molecular signaling, genetic regulation, and ecological implications"],"prefix":"10.1007","volume":"25","author":[{"given":"Shumila","family":"Ishfaq","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hadiqa","family":"Anum","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tayyaba","family":"Shaheen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sana","family":"Zulfiqar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anila","family":"Ishfaq","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Arslan","family":"Anjum","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Umera","family":"Ramzan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amna","family":"Rafiq","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"family":"Mehboob-ur-Rahman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Guo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,5,29]]},"reference":[{"key":"1620_CR1","doi-asserted-by":"publisher","unstructured":"Abdulsalam O, Wagner K, Wirth S, Kunert M, David A, Kallenbach M (2021) & others. Phytohormones and volatile organic compounds, like geosmin, in the ectomycorrhiza of Tricholoma vaccinum and Norway spruce (Picea abies). Mycorrhiza, 31, 173\u2013188. https:\/\/doi.org\/10.1007\/s00572-020-01005-2","DOI":"10.1007\/s00572-020-01005-2"},{"key":"1620_CR2","doi-asserted-by":"publisher","unstructured":"Achim\u00f3n F, Brito VD, Pizzolitto RP, Zygadlo JA (2022) Effect of carbon sources on the production of volatile organic compounds by Fusarium verticillioides. J Fungi 8(158). https:\/\/doi.org\/10.3390\/jof8020158","DOI":"10.3390\/jof8020158"},{"key":"1620_CR3","unstructured":"Adamatzky A (2021) Language of fungi derived from electrical spiking activity. ArXiv. https:\/\/arxiv.org\/abs\/2112.09907"},{"issue":"1","key":"1620_CR4","first-page":"123","volume":"31","author":"M Admassie","year":"2019","unstructured":"Admassie M, Alemu T, Mulatu A (2019) Microbial biocontrol by trichoderma, its biological interactions and mode of actions. Pakistan J Phytopathol 31(1):123\u2013146","journal-title":"Pakistan J Phytopathol"},{"key":"1620_CR5","doi-asserted-by":"publisher","first-page":"100133","DOI":"10.1016\/j.bbadva.2024.100133","volume":"7","author":"H Agarwal","year":"2024","unstructured":"Agarwal H, Gurnani B, Pippal B, Jain N (2024) Capturing the micro-communities: insights into biogenesis and architecture of bacterial biofilms. BBA Adv 7:100133. https:\/\/doi.org\/10.1016\/j.bbadva.2024.100133","journal-title":"BBA Adv"},{"issue":"9","key":"1620_CR6","doi-asserted-by":"publisher","first-page":"1012","DOI":"10.1089\/ars.2012.5062","volume":"19","author":"N Alkan","year":"2013","unstructured":"Alkan N, Espeso EA, Prusky D (2013) Virulence regulation of phytopathogenic fungi by pH. Antioxid Redox Signal 19(9):1012\u20131025","journal-title":"Antioxid Redox Signal"},{"key":"1620_CR7","doi-asserted-by":"publisher","first-page":"2549","DOI":"10.3389\/fimmu.2018.02549","volume":"9","author":"M Arias","year":"2018","unstructured":"Arias M, Santiago L, Vidal-Garc\u00eda M, Redrado S, Lanuza P, Comas L, G\u00e1lvez EM (2018) Preparations for invasion: modulation of host lung immunity during pulmonary aspergillosis by gliotoxin and other fungal secondary metabolites. Front Immunol 9:2549","journal-title":"Front Immunol"},{"key":"1620_CR8","doi-asserted-by":"publisher","unstructured":"Bahram M, Netherway T (2022) Fungi as mediators linking organisms and ecosystems. FEMS Microbiol Rev 46(2). https:\/\/doi.org\/10.1093\/femsre\/fuab058","DOI":"10.1093\/femsre\/fuab058"},{"issue":"3","key":"1620_CR9","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1039\/C6MT00301J","volume":"9","author":"G Bairwa","year":"2017","unstructured":"Bairwa G, Jung H, W., Kronstad JW (2017) Iron acquisition in fungal pathogens of humans. Metallomics 9(3):215\u2013227","journal-title":"Metallomics"},{"issue":"1","key":"1620_CR10","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1146\/annurev.ge.29.120195.001143","volume":"29","author":"F Banuett","year":"1995","unstructured":"Banuett F (1995) Genetics of Ustilago Maydis, a fungal pathogen that induces tumors in maize. Annu Rev Genet 29(1):179\u2013208","journal-title":"Annu Rev Genet"},{"issue":"5","key":"1620_CR11","doi-asserted-by":"publisher","first-page":"627","DOI":"10.1093\/femsre\/fuy022","volume":"42","author":"J Barriuso","year":"2018","unstructured":"Barriuso J, Hogan DA, Keshavarz T, Mart\u00ednez MJ (2018) Role of quorum sensing and chemical communication in fungal biotechnology and pathogenesis. FEMS Microbiol Rev 42(5):627. https:\/\/doi.org\/10.1093\/femsre\/fuy022","journal-title":"FEMS Microbiol Rev"},{"issue":"12","key":"1620_CR12","doi-asserted-by":"publisher","first-page":"e1010502","DOI":"10.1371\/journal.pgen.1010502","volume":"18","author":"\u00d6S Bayram","year":"2022","unstructured":"Bayram \u00d6S, Bayram \u00d6, Karahoda B, Meister C, K\u00f6hler AM, Thieme S, Elramli N, Frawley D, McGowan J, Fitzpatrick DA, Schmitt K, Valerius O, Goldman GH, Braus GH (2022) F-box receptor mediated control of substrate stability and subcellular location organizes cellular development of Aspergillus Nidulans. PLoS Genet 18(12):e1010502. https:\/\/doi.org\/10.1371\/journal.pgen.1010502","journal-title":"PLoS Genet"},{"key":"1620_CR13","first-page":"223","volume":"73","author":"DJ Becker","year":"2022","unstructured":"Becker DJ, Cariveau DP (2022) Applied microbial ecology: leveraging the fungal Microbiome for biotechnological applications. Curr Opin Biotechnol 73:223\u2013229","journal-title":"Curr Opin Biotechnol"},{"key":"1620_CR15","doi-asserted-by":"publisher","first-page":"e03272","DOI":"10.1128\/mbio.03272-21","volume":"13","author":"TA Bitencourt","year":"2022","unstructured":"Bitencourt TA, Hatanaka O, Pessoni AM, Freitas MS, Trentin G, Santos P, Rossi A, Martinez-Rossi NM, Alves LL, Casadevall A, Rodrigues ML, Almeida F (2022) Fungal extracellular vesicles are involved in intraspecies intracellular communication. MBio 13:e03272\u2013e03221. https:\/\/doi.org\/10.1128\/mbio.03272-21","journal-title":"MBio"},{"key":"1620_CR16","doi-asserted-by":"crossref","unstructured":"B\u00f6hm J, Hoff B, O\u2019Gorman CM, Wolfers S, Klix V, Binger D (2013) & others. Sexual reproduction and mating-type\u2013mediated strain development in the penicillin-producing fungus Penicillium chrysogenum. Proceedings of the National Academy of Sciences, 110(4), 1476\u20131481","DOI":"10.1073\/pnas.1217943110"},{"issue":"10","key":"1620_CR17","doi-asserted-by":"publisher","first-page":"883","DOI":"10.1016\/j.tim.2021.03.005","volume":"29","author":"RB Bourret","year":"2021","unstructured":"Bourret RB, Kennedy EN, Foster CA, Sep\u00falveda VE, Goldman WE (2021) A radical reimagining of fungal Two-Component regulatory systems. Trends Microbiol 29(10):883\u2013893. https:\/\/doi.org\/10.1016\/j.tim.2021.03.005","journal-title":"Trends Microbiol"},{"key":"1620_CR18","doi-asserted-by":"publisher","unstructured":"Bruisson S, Alfiky A, L\u2019Haridon F, Weisskopf L (2023) A new system to study directional volatile-mediated interactions reveals the ability of fungi to specifically React to other fungal volatiles. Front Ecol Evol 11. https:\/\/doi.org\/10.3389\/fevo.2023.1128514","DOI":"10.3389\/fevo.2023.1128514"},{"issue":"9","key":"1620_CR20","doi-asserted-by":"publisher","first-page":"635","DOI":"10.3390\/jof10090635","volume":"10","author":"Y Capdesu\u00f1er","year":"2024","unstructured":"Capdesu\u00f1er Y, Saa LR, Edel M (2024) Uncovering the mechanisms: the role of biotrophic Fungi in activating or suppressing plant defense responses. J Fungi 10(9):635. https:\/\/doi.org\/10.3390\/jof10090635","journal-title":"J Fungi"},{"key":"1620_CR21","first-page":"104380","volume":"174","author":"J Cheetham","year":"2024","unstructured":"Cheetham J, Zhou Y, Hall RA (2024) Crosstalk between the Hog1 MAPK and cAMP-PKA pathways regulates Candida albicans morphogenesis. Fungal Genet Biol 174:104380","journal-title":"Fungal Genet Biol"},{"issue":"12","key":"1620_CR22","doi-asserted-by":"publisher","first-page":"2459","DOI":"10.3390\/microorganisms10122459","volume":"10","author":"CD Clerck","year":"2022","unstructured":"Clerck CD, Josselin L, Vangoethem V, Lassois L, Fauconnier L, Jijakli H (2022) Weapons against themselves: identification and use of quorum sensing volatile molecules to control plant pathogenic Fungi growth. Microorganisms 10(12):2459. https:\/\/doi.org\/10.3390\/microorganisms10122459","journal-title":"Microorganisms"},{"issue":"2","key":"1620_CR23","doi-asserted-by":"publisher","first-page":"254","DOI":"10.1111\/1574-6976.12065","volume":"38","author":"M Conrad","year":"2014","unstructured":"Conrad M, Schothorst J, Kankipati HN, Van Zeebroeck G, Rubio-Texeira M, Thevelein JM (2014) Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae. FEMS Microbiol Rev 38(2):254\u2013299","journal-title":"FEMS Microbiol Rev"},{"key":"1620_CR24","doi-asserted-by":"publisher","unstructured":"Coppola M, Cascone P, Di Lelio I, Woo SL, Lorito M, Rao R (2019) & others. Trichoderma atroviride p1 colonization of tomato plants enhances both direct and indirect defense barriers against insects. Frontiers in Physiology, 10. https:\/\/doi.org\/10.3389\/fphys.2019.00813","DOI":"10.3389\/fphys.2019.00813"},{"issue":"6","key":"1620_CR25","doi-asserted-by":"publisher","first-page":"1384","DOI":"10.3390\/microorganisms11061384","volume":"11","author":"VM Corbu","year":"2023","unstructured":"Corbu VM, Dumbrav\u0103 A\u0218, Vr\u00e2ncianu CO, \u0218esan TE (2023) Current insights in fungal Importance\u2014A comprehensive review. Microorganisms 11(6):1384. https:\/\/doi.org\/10.3390\/microorganisms11061384","journal-title":"Microorganisms"},{"key":"1620_CR26","doi-asserted-by":"publisher","unstructured":"Costa-Almeida O, de Araujo N, Dias BHS, de Sant\u2019Anna Freitas C, Coerini F, Ryu L (2023) C.-M., & others. The power of the smallest: The inhibitory activity of microbial volatile organic compounds against phytopathogens. Frontiers in Microbiology, 13. https:\/\/doi.org\/10.3389\/fmicb.2022.951130","DOI":"10.3389\/fmicb.2022.951130"},{"key":"1620_CR27","doi-asserted-by":"publisher","unstructured":"Cottier F, M\u00fchlschlegel FA (2011) Communication in Fungi. Int J Microbiol 2012:351832. https:\/\/doi.org\/10.1155\/2012\/351832","DOI":"10.1155\/2012\/351832"},{"key":"1620_CR29","doi-asserted-by":"publisher","first-page":"21","DOI":"10.21608\/mb.2020.32802.1016","volume":"5","author":"R Devi","year":"2020","unstructured":"Devi R, Kaur T, Kour D, Yadav KLR, A., An Y (2020) Beneficial fungal communities from different habitats and their roles in plant growth promotion and soil health. Microb Biosystems 5:21\u201347. https:\/\/doi.org\/10.21608\/mb.2020.32802.1016","journal-title":"Microb Biosystems"},{"key":"1620_CR30","first-page":"1","volume":"6","author":"A di Fossalunga","year":"2019","unstructured":"di Fossalunga A, Novero M (2019) To trade in the field: the molecular determinants of arbuscular mycorrhiza nutrient exchange. Chem Biol Technol Agric 6:1\u201312","journal-title":"Chem Biol Technol Agric"},{"issue":"1","key":"1620_CR31","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/ncomms12344","volume":"7","author":"RB Di Roberto","year":"2016","unstructured":"Di Roberto RB, Chang B, Trusina A, Peisajovich SG (2016) Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions. Nat Commun 7(1):1\u201311. https:\/\/doi.org\/10.1038\/ncomms12344","journal-title":"Nat Commun"},{"issue":"6","key":"1620_CR32","first-page":"307","volume":"72","author":"S Di\u017eov\u00e1","year":"2017","unstructured":"Di\u017eov\u00e1 S, Bujd\u00e1kov\u00e1 H (2017) Properties and role of the quorum sensing molecule Farnesol in relation to the yeast Candida albicans. Die Pharmazie-An Int J Pharm Sci 72(6):307\u2013312","journal-title":"Die Pharmazie-An Int J Pharm Sci"},{"issue":"1","key":"1620_CR33","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1128\/microbiolspec.FUNK-0023-2016","volume":"5","author":"G Doehlemann","year":"2017","unstructured":"Doehlemann G, \u00d6kmen B, Zhu W, Bolton MD (2017) Plant pathogenic fungi. Microbiol Spectr 5(1):1\u20135","journal-title":"Microbiol Spectr"},{"issue":"1","key":"1620_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s42003-024-06459-0","volume":"7","author":"L Eixer\u00e9s","year":"2024","unstructured":"Eixer\u00e9s L, Casino P (2024) Structural and functional insights underlying recognition of histidine phosphotransfer protein in fungal phosphorelay systems. Commun Biology 7(1):1\u201315. https:\/\/doi.org\/10.1038\/s42003-024-06459-0","journal-title":"Commun Biology"},{"issue":"12","key":"1620_CR35","doi-asserted-by":"publisher","first-page":"1044","DOI":"10.3390\/biology13121044","volume":"13","author":"B El Amrani","year":"2024","unstructured":"El Amrani B (2024) Insights into the biotic factors shaping ectomycorrhizal associations. Biology 13(12):1044. https:\/\/doi.org\/10.3390\/biology13121044","journal-title":"Biology"},{"key":"1620_CR49","doi-asserted-by":"publisher","unstructured":"El-Defrawy H, M. M., El-Latif Hesham A (2020) G-protein-coupled receptors in Fungi. Fungal Biotechnol Bioeng 37. https:\/\/doi.org\/10.1007\/978-3-030-41870-0_3","DOI":"10.1007\/978-3-030-41870-0_3"},{"issue":"Supplement1","key":"1620_CR36","first-page":"S54","volume":"57","author":"B Enjalbert","year":"2018","unstructured":"Enjalbert B, Whiteway M, Robbins N, Cowen LE (2018) Stress-induced changes in the transcriptome, an overview of signaling pathways. Med Mycol 57(Supplement1):S54\u2013S62","journal-title":"Med Mycol"},{"key":"1620_CR37","doi-asserted-by":"publisher","unstructured":"Esparza-Reynoso S, Ruiz-Herrera LF, Pelagio-Flores R, Macias-Rodriguez LI, Martinez-Trujillo M, L\u00f3pez-Coria M (2021) & others. Trichoderma atroviride-emitted volatiles improve growth of Arabidopsis seedlings through modulation of sucrose transport and metabolism. Plant Cell and Environment, 44, 1961\u20131976. https:\/\/doi.org\/10.1111\/pce.14014","DOI":"10.1111\/pce.14014"},{"issue":"3","key":"1620_CR38","doi-asserted-by":"publisher","first-page":"213","DOI":"10.3390\/jof11030213","volume":"11","author":"F Estefania","year":"2025","unstructured":"Estefania F, A. J., Antonio G (2025) Fungal stress responses and the importance of GPCRs. J Fungi 11(3):213. https:\/\/doi.org\/10.3390\/jof11030213","journal-title":"J Fungi"},{"key":"1620_CR39","doi-asserted-by":"publisher","first-page":"441411","DOI":"10.3389\/fmicb.2019.00619","volume":"10","author":"MS Fischer","year":"2019","unstructured":"Fischer MS, Glass NL (2019) Communicate and fuse: how filamentous Fungi Establish and maintain an interconnected mycelial network. Front Microbiol 10:441411. https:\/\/doi.org\/10.3389\/fmicb.2019.00619","journal-title":"Front Microbiol"},{"key":"1620_CR40","doi-asserted-by":"crossref","unstructured":"Gao F, Zhang X (2021) Mapping crop phenology in near real-time using satellite remote sensing: challenges and opportunities. J Remote Sens","DOI":"10.34133\/2021\/8379391"},{"key":"1620_CR41","first-page":"193","volume":"12","author":"J Gao","year":"2021","unstructured":"Gao J, Xu X, Huang K, Liang Z (2021) Fungal G-Protein-Coupled receptors: A promising mediator of the impact of extracellular signals on biosynthesis of Ochratoxin A. Front Microbiol 12:193","journal-title":"Front Microbiol"},{"issue":"1","key":"1620_CR42","doi-asserted-by":"publisher","first-page":"79","DOI":"10.1111\/nph.13423","volume":"208","author":"K Garcia","year":"2015","unstructured":"Garcia K, Delaux PM, Cope KR, An\u00e9 JM (2015) Molecular signals required for the establishment and maintenance of ectomycorrhizal symbioses. New Phytol 208(1):79\u201387","journal-title":"New Phytol"},{"issue":"3","key":"1620_CR43","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1016\/j.tim.2024.11.001","volume":"33","author":"S Garg","year":"2025","unstructured":"Garg S, Kim M, Romero-Suarez D (2025) Current advancements in fungal engineering technologies for sustainable development goals. Trends Microbiol 33(3):285\u2013301. https:\/\/doi.org\/10.1016\/j.tim.2024.11.001","journal-title":"Trends Microbiol"},{"issue":"1","key":"1620_CR44","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41467-024-52568-z","volume":"15","author":"NC Gervais","year":"2024","unstructured":"Gervais NC, Shapiro RS (2024) Discovering the hidden function in fungal genomes. Nat Commun 15(1):1\u201312. https:\/\/doi.org\/10.1038\/s41467-024-52568-z","journal-title":"Nat Commun"},{"issue":"11","key":"1620_CR45","first-page":"513","volume":"8","author":"NL Glass","year":"2000","unstructured":"Glass NL, Rasmussen C, Roca MG, Read ND (2000) Hyphal homing, fusion and mycelial interconnectedness. Trends Microbiol 8(11):513\u2013518","journal-title":"Trends Microbiol"},{"key":"1620_CR46","unstructured":"Gonz\u00e1les Rojas K (2023) Drug delivery systems for macrophage-and organelle-specific targeting. Friedrich-Schiller-Universit\u00e4t Jena"},{"key":"1620_CR47","doi-asserted-by":"publisher","first-page":"plv050","DOI":"10.1093\/aobpla\/plv050","volume":"7","author":"MA Gorzelak","year":"2014","unstructured":"Gorzelak MA, Asay AK, Pickles BJ, Simard SW (2014) Inter-plant communication through mycorrhizal networks mediates complex adaptive behaviour in plant communities. AoB PLANTS 7:plv050. https:\/\/doi.org\/10.1093\/aobpla\/plv050","journal-title":"AoB PLANTS"},{"key":"1620_CR48","doi-asserted-by":"publisher","unstructured":"Guo Y, Jud W, Weikl F, Ghirardo A, Junker RR, Polle A (2021) & others. Volatile organic compound patterns predict fungal trophic mode and lifestyle. Communications Biology, 4, 1\u201312. https:\/\/doi.org\/10.1038\/s42003-021-02198-8","DOI":"10.1038\/s42003-021-02198-8"},{"key":"1620_CR200","doi-asserted-by":"publisher","unstructured":"Haas-Stapleton EJ, Lu Y, Hong S, Arita M, Favoreto S, Nigam S, Serhan CN, Agabian N (2007) Candida albicans modulates host defense by biosynthesizing the pro-resolving mediator resolvin E1. PLoS ONE 2(12):e1316. https:\/\/doi.org\/10.1371\/journal.pone.0001316","DOI":"10.1371\/journal.pone.0001316"},{"issue":"4","key":"1620_CR50","doi-asserted-by":"publisher","first-page":"e1002431","DOI":"10.1371\/journal.pbio.1002431","volume":"14","author":"J Heller","year":"2016","unstructured":"Heller J, Zhao J, Rosenfield G, Kowbel DJ, Gladieux P, Glass NL (2016) Characterization of Greenbeard genes involved in Long-Distance kind discrimination in a microbial eukaryote. PLoS Biol 14(4):e1002431. https:\/\/doi.org\/10.1371\/journal.pbio.1002431","journal-title":"PLoS Biol"},{"issue":"1","key":"1620_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41467-023-40867-w","volume":"14","author":"K Hiruma","year":"2023","unstructured":"Hiruma K, Aoki S, Takino J, Higa T, Utami YD, Shiina A, Okamoto M, Nakamura M, Kawamura N, Ohmori Y, Sugita R, Tanoi K, Sato T, Oikawa H, Minami A, Iwasaki W, Saijo Y (2023) A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae. Nat Commun 14(1):1\u201318. https:\/\/doi.org\/10.1038\/s41467-023-40867-w","journal-title":"Nat Commun"},{"issue":"3","key":"1620_CR53","doi-asserted-by":"publisher","first-page":"e00301","DOI":"10.1128\/mbio.00301-22","volume":"13","author":"L Honorato","year":"2022","unstructured":"Honorato L, de Araujo JFD, Ellis CC, Piffer AC, Pereira Y, Frases S, Nimrichter L (2022) Extracellular vesicles regulate biofilm formation and yeast-to-hypha differentiation in Candida albicans. MBio 13(3):e00301\u2013e00322","journal-title":"MBio"},{"key":"1620_CR54","doi-asserted-by":"crossref","unstructured":"Hrmprt RJ (2015) Prephenethylamine derivatives modulate multicellular development in filamentous fungi. Proceedings of the National Academy of Sciences, 112(46), 14452\u201314457","DOI":"10.1073\/pnas.1508520112"},{"key":"1620_CR130","doi-asserted-by":"publisher","unstructured":"Huster D, Maiti S, Herrmann A (2024) Phospholipid membranes as chemically and functionally tunable materials. Adv Mater 36(23):2312898. https:\/\/doi.org\/10.1002\/adma.202312898","DOI":"10.1002\/adma.202312898"},{"key":"1620_CR56","doi-asserted-by":"publisher","unstructured":"Itani A, Masuo S, Yamamoto R, Serizawa T, Fukasawa Y, Takaya N, Toyota M, Betsuyaku S, Takeshita N (2023) Local calcium signal transmission in mycelial network exhibits decentralized stress responses. PNAS Nexus 2(3). https:\/\/doi.org\/10.1093\/pnasnexus\/pgad0102","DOI":"10.1093\/pnasnexus\/pgad0102"},{"key":"1620_CR55","doi-asserted-by":"publisher","first-page":"1257098","DOI":"10.3389\/fpls.2023.1257098","volume":"14","author":"Y Itha\u00ed","year":"2023","unstructured":"Itha\u00ed Y, Fernando L, Geraldine C, Yu H (2023) Fungal volatile organic compounds: mechanisms involved in their sensing and dynamic communication with plants. Front Plant Sci 14:1257098. https:\/\/doi.org\/10.3389\/fpls.2023.1257098","journal-title":"Front Plant Sci"},{"issue":"2","key":"1620_CR57","doi-asserted-by":"publisher","first-page":"840","DOI":"10.3390\/encyclopedia2020055","volume":"2","author":"S Jacob","year":"2022","unstructured":"Jacob S, B\u00fchring S, Bersching K (2022) Recent advances in research on molecular mechanisms of fungal signaling. Encyclopedia 2(2):840\u2013863. https:\/\/doi.org\/10.3390\/encyclopedia2020055","journal-title":"Encyclopedia"},{"key":"1620_CR58","first-page":"1170214","volume":"13","author":"L Jiang","year":"2023","unstructured":"Jiang L, Zhang X, Lin L (2023) MAPK signaling in Aspergillus fumigatus: role in stress tolerance and pathogenicity. Front Cell Infect Microbiol 13:1170214","journal-title":"Front Cell Infect Microbiol"},{"key":"1620_CR59","doi-asserted-by":"publisher","unstructured":"Kaddes A, Fauconnier ML, Sassi K, Nasraoui B, Jijakli MH (2019) Endophytic fungal volatile compounds as solution for sustainable agriculture. Molecules 24(61065). https:\/\/doi.org\/10.3390\/molecules24061065","DOI":"10.3390\/molecules24061065"},{"issue":"3","key":"1620_CR60","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1038\/s41579-018-0121-1","volume":"17","author":"NP Keller","year":"2019","unstructured":"Keller NP (2019) Fungal secondary metabolism: regulation, function and drug discovery. Nat Rev Microbiol 17(3):167\u2013180","journal-title":"Nat Rev Microbiol"},{"key":"1620_CR61","doi-asserted-by":"crossref","unstructured":"Kennedy EN (2016) & others. Extended N-terminal region of the essential phosphorelay signaling protein Ypd1 from Cryptococcus neoformans contributes to structural stability, phosphostability, and binding of calcium ions. FEMS Yeast Research, 16, fow068","DOI":"10.1093\/femsyr\/fow068"},{"issue":"6","key":"1620_CR62","doi-asserted-by":"publisher","first-page":"733","DOI":"10.1094\/MPMI-08-10-0194","volume":"24","author":"BN Kidd","year":"2011","unstructured":"Kidd BN, Kadoo NY, Dombrecht B, Tekeoglu M, Gardiner DM, Thatcher LF, Kazan K (2011) Auxin signaling and transport promote susceptibility to the root-infecting fungal pathogen fusarium oxysporum in Arabidopsis. Mol Plant Microbe Interact 24(6):733\u2013748","journal-title":"Mol Plant Microbe Interact"},{"key":"1620_CR63","doi-asserted-by":"crossref","unstructured":"Kleinert A, Benedito VA, Morcillo RJL, Dames J, Cornejo-Rivas P, Zuniga-Feest A, Mu\u00f1oz G (2018) Morphological and symbiotic root modifications for mineral acquisition from nutrient-poor soils. In Root Biology (pp. 85\u2013142)","DOI":"10.1007\/978-3-319-75910-4_4"},{"issue":"7","key":"1620_CR64","doi-asserted-by":"publisher","first-page":"2377","DOI":"10.1128\/AEM.03880-12","volume":"79","author":"P Korripally","year":"2013","unstructured":"Korripally P, Timokhin VI, Houtman CJ, Mozuch MD, Hammel KE (2013) Evidence from Serpula lacrymans that 2,5-dimethoxyhydroquinone is a lignocellulolytic agent of divergent brown rot basidiomycetes. Appl Environ Microbiol 79(7):2377\u20132383","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"1620_CR65","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1111\/nph.14347","volume":"214","author":"Y Kou","year":"2017","unstructured":"Kou Y, Tan YH, Ramanujam R, Naqvi NI (2017) Structure-function analyses of the Pth11 receptor reveal an important role for CFEM motif and redox regulation in rice blast. New Phytol 214(1):330\u2013342. https:\/\/doi.org\/10.1111\/nph.14347","journal-title":"New Phytol"},{"issue":"3","key":"1620_CR66","doi-asserted-by":"publisher","first-page":"99","DOI":"10.3390\/jof6030099","volume":"6","author":"R Kov\u00e1cs","year":"2020","unstructured":"Kov\u00e1cs R, Majoros L (2020) Fungal Quorum-Sensing molecules: A review of their antifungal effect against Candida biofilms. J Fungi 6(3):99. https:\/\/doi.org\/10.3390\/jof6030099","journal-title":"J Fungi"},{"issue":"4","key":"1620_CR67","doi-asserted-by":"publisher","first-page":"jkac050","DOI":"10.1093\/g3journal\/jkac050","volume":"12","author":"EK Krach","year":"2022","unstructured":"Krach EK, Skaro M, Wu Y, Arnold J (2022) Characterizing the gene\u2013environment interaction underlying natural morphological variation in neurospora crassa conidiophores using high-throughput phenomics and transcriptomics. G3: Genes|Genomes|Genetics 12(4):jkac050. https:\/\/doi.org\/10.1093\/g3journal\/jkac050","journal-title":"G3: Genes|Genomes|Genetics"},{"key":"1620_CR68","doi-asserted-by":"crossref","first-page":"2023","DOI":"10.3389\/ffunb.2023.1241539","volume":"4","author":"A Kumar","year":"2023","unstructured":"Kumar A, Wahab A, Usman M et al (2023) Role of fungal VOCs and common mycorrhizal networks in interplant signaling and plant stress resistance. Front Fungal Biology 4:2023","journal-title":"Front Fungal Biology"},{"issue":"6","key":"1620_CR69","doi-asserted-by":"publisher","first-page":"3390","DOI":"10.1021\/acs.chemrev.0c00199","volume":"121","author":"Y Lee","year":"2020","unstructured":"Lee Y, Puumala E, Robbins N, Cowen LE (2020) Antifungal drug resistance: molecular mechanisms in Candida albicans and beyond. Chem Rev 121(6):3390. https:\/\/doi.org\/10.1021\/acs.chemrev.0c00199","journal-title":"Chem Rev"},{"key":"1620_CR70","doi-asserted-by":"publisher","first-page":"1250151","DOI":"10.3389\/fmicb.2023.1250151","volume":"14","author":"L Li","year":"2023","unstructured":"Li L, Pan Y, Zhang S, Yang T, Li Z, Wang B, Sun H, Zhang M, Li X (2023) Quorum sensing: Cell-to-cell communication in Saccharomyces cerevisiae. Front Microbiol 14:1250151. https:\/\/doi.org\/10.3389\/fmicb.2023.1250151","journal-title":"Front Microbiol"},{"issue":"8","key":"1620_CR71","doi-asserted-by":"crossref","first-page":"812","DOI":"10.3390\/jof9080812","volume":"9","author":"C Liang","year":"2023","unstructured":"Liang C, Wang H, Li Y (2023) Interplay between MAPK and calcium signaling pathways in fungal stress responses. J Fungi 9(8):812","journal-title":"J Fungi"},{"issue":"1","key":"1620_CR72","doi-asserted-by":"publisher","first-page":"1884","DOI":"10.1080\/21505594.2021.1949883","volume":"12","author":"B Liao","year":"2021","unstructured":"Liao B, Ye X, Chen X, Zhou Y, Cheng L, Zhou X, Ren B (2021) The two-component signal transduction system and its regulation in Candida albicans. Virulence 12(1):1884. https:\/\/doi.org\/10.1080\/21505594.2021.1949883","journal-title":"Virulence"},{"key":"1620_CR73","doi-asserted-by":"publisher","first-page":"102291","DOI":"10.1016\/J.PBI.2022.102291","volume":"69","author":"CJ Liao","year":"2022","unstructured":"Liao CJ, Hailemariam S, Sharon A, Mengiste T (2022) Pathogenic strategies and immune mechanisms to necrotrophs: differences and similarities to biotrophs and hemibiotrophs. Curr Opin Plant Biol 69:102291. https:\/\/doi.org\/10.1016\/J.PBI.2022.102291","journal-title":"Curr Opin Plant Biol"},{"issue":"2","key":"1620_CR74","doi-asserted-by":"publisher","first-page":"59","DOI":"10.3390\/jof4020059","volume":"4","author":"PN Lipke","year":"2018","unstructured":"Lipke PN (2018) What we do not know about fungal cell adhesion molecules. J Fungi 4(2):59. https:\/\/doi.org\/10.3390\/jof4020059","journal-title":"J Fungi"},{"issue":"1","key":"1620_CR75","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1080\/21505594.2021.2019950","volume":"13","author":"JP Lopes","year":"2021","unstructured":"Lopes JP, Lionakis MS (2021) Pathogenesis and virulence of Candida albicans. Virulence 13(1):89. https:\/\/doi.org\/10.1080\/21505594.2021.2019950","journal-title":"Virulence"},{"key":"1620_CR76","doi-asserted-by":"publisher","first-page":"1965","DOI":"10.1038\/sj.emboj.7600673","volume":"24","author":"GL Lukov","year":"2014","unstructured":"Lukov GL, Hu T, McLaughlin JN, Hamm HE, Willardson BM (2014) Phosducin-like protein acts as a molecular chaperone for G protein \u0392\u03b3 dimer assembly. EMBO J 24:1965\u20131975","journal-title":"EMBO J"},{"issue":"12","key":"1620_CR77","doi-asserted-by":"publisher","first-page":"1155","DOI":"10.1094\/PDIS.1999.83.12.1155","volume":"83","author":"Y Luo","year":"1999","unstructured":"Luo Y, Myers O, Lightfoot DA, Schmidt ME (1999) Root colonization of soybean cultivars in the F.eld by Fusarium Solani F. Sp. glycines. Plant Dis 83(12):1155\u20131159","journal-title":"Plant Dis"},{"key":"1620_CR78","doi-asserted-by":"publisher","first-page":"100165","DOI":"10.1016\/j.crstbi.2025.100165","volume":"9","author":"Y Luo","year":"2025","unstructured":"Luo Y, Sun L, Peng Y (2025) The structural basis of the G protein\u2013coupled receptor and ion channel axis. Curr Res Struct Biology 9:100165. https:\/\/doi.org\/10.1016\/j.crstbi.2025.100165","journal-title":"Curr Res Struct Biology"},{"issue":"1","key":"1620_CR79","doi-asserted-by":"publisher","first-page":"114","DOI":"10.3390\/metabo13010114","volume":"13","author":"J Majdura","year":"2023","unstructured":"Majdura J, Jankiewicz U, Ga\u0142\u0105zka A, Orzechowski S (2023) The role of quorum sensing molecules in Bacterial\u2013Plant interactions. Metabolites 13(1):114. https:\/\/doi.org\/10.3390\/metabo13010114","journal-title":"Metabolites"},{"key":"1620_CR80","doi-asserted-by":"publisher","unstructured":"Majeed G, Noor W, Lone R, Agrawal S, Alaklabi A, Shah MA, Kamili AN (2024) Modulation of plant defenses by jasmonic acid and Salicylic acid in Capsicum annuum L. against fusarium wilt in response to Fusarium oxysporum pathogen. Plant Stress 100571. https:\/\/doi.org\/10.1016\/J.STRESS.2024.100571","DOI":"10.1016\/J.STRESS.2024.100571"},{"issue":"2","key":"1620_CR81","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1007\/s12079-018-0462-6","volume":"12","author":"S Majumdar","year":"2018","unstructured":"Majumdar S, Pal S (2018) Information transmission in microbial and fungal communication: from classical to quantum. J Cell Communication Signal 12(2):491\u2013502. https:\/\/doi.org\/10.1007\/s12079-018-0462-6","journal-title":"J Cell Communication Signal"},{"key":"1620_CR201","doi-asserted-by":"publisher","unstructured":"Mare L, Iatta R, Montagna MT, Luberto C, Del Poeta M (2005) APP1 transcription is regulated by inositol-phosphorylceramide synthase 1-diacylglycerol pathway and is controlled by ATF2 transcription factor in Cryptococcus neoformans. J Biol Chem 280(43):36055\u201336064. https:\/\/doi.org\/10.1074\/jbc.M507285200","DOI":"10.1074\/jbc.M507285200"},{"issue":"23","key":"1620_CR82","doi-asserted-by":"publisher","first-page":"12808","DOI":"10.3390\/ijms252312808","volume":"25","author":"K Markowska","year":"2024","unstructured":"Markowska K, Szymanek-Majchrzak K, Pituch H, Majewska A (2024) Understanding Quorum-Sensing and biofilm forming in anaerobic bacterial communities. Int J Mol Sci 25(23):12808. https:\/\/doi.org\/10.3390\/ijms252312808","journal-title":"Int J Mol Sci"},{"key":"1620_CR83","doi-asserted-by":"crossref","unstructured":"McPherson KB, Leff ER, Li MH, Meurice C, Tai S, Traynor JR (2018) & others. Regulators of G-protein signaling (RGS) proteins promote receptor coupling to G-protein-coupled inwardly rectifying potassium (GIRK) channels. Journal of Neuroscience: The Official Journal of the Society for Neuroscience, 38, 8737\u20138744","DOI":"10.1523\/JNEUROSCI.0516-18.2018"},{"key":"1620_CR84","doi-asserted-by":"publisher","first-page":"745","DOI":"10.1016\/j.toxrep.2019.06.021","volume":"6","author":"M Meena","year":"2019","unstructured":"Meena M, Samal S (2019) Alternaria host-specific (HSTs) toxins: an overview of chemical characterization, target sites, regulation and their toxic effects. Toxicol Rep 6:745\u2013758","journal-title":"Toxicol Rep"},{"key":"1620_CR85","doi-asserted-by":"publisher","unstructured":"Mehmood A, Liu G, Wang X, Meng G, Wang C, Liu Y (2019) Fungal Quorum-Sensing Molecules and Inhibitors with Potential Antifungal Activity: A Review. Molecules, 24(10), 1950. https:\/\/doi.org\/10.3390\/molecules24101950","DOI":"10.3390\/molecules24101950"},{"issue":"6","key":"1620_CR86","doi-asserted-by":"publisher","first-page":"1098","DOI":"10.3390\/plants10061098","volume":"10","author":"S Mehta","year":"2021","unstructured":"Mehta S, Chakraborty A, Roy A, Singh IK, Singh A (2021) Fight hard or die trying: current status of lipid signaling during plant\u2013pathogen interaction. Plants 10(6):1098","journal-title":"Plants"},{"key":"1620_CR202","doi-asserted-by":"publisher","unstructured":"Mochochoko BM, Pohl CH, O\u2019Neill HG (2023) Candida albicans-enteric viral interactions\u2014The prostaglandin E2 connection and host immune responses. Iscience 26(1). https:\/\/doi.org\/10.1016\/j.isci.2022.105870","DOI":"10.1016\/j.isci.2022.105870"},{"key":"1620_CR88","doi-asserted-by":"publisher","first-page":"65","DOI":"10.3389\/fmicb.2013.00065","volume":"4","author":"WK Mousa","year":"2013","unstructured":"Mousa WK, Raizada MN (2013) The diversity of anti-microbial secondary metabolites produced by fungal endophytes: an interdisciplinary perspective. Front Microbiol 4:65","journal-title":"Front Microbiol"},{"key":"1620_CR89","doi-asserted-by":"crossref","unstructured":"M\u00fcller A, Faubert P, Hagen M, zur, Pulitz T, Degenhardt J, Schnitzler J-P, Rosenkranz M (2013) Volatile profiles of fungi\u2013chemotyping of species and ecological functions. Fungal Genetics and Biology, 54, 25\u201333","DOI":"10.1016\/j.fgb.2013.02.005"},{"key":"1620_CR90","doi-asserted-by":"publisher","first-page":"4272","DOI":"10.3390\/molecules25184272","volume":"25","author":"F Naider","year":"2020","unstructured":"Naider F, Becker JM, Zerbe O, Mcphee DJ (2020) A paradigm for peptide Hormone-GPCR analyses. Molecules 25:4272","journal-title":"Molecules"},{"issue":"6","key":"1620_CR91","doi-asserted-by":"publisher","first-page":"1146","DOI":"10.3390\/microorganisms10061146","volume":"10","author":"DE Nordzieke","year":"2022","unstructured":"Nordzieke DE (2022) Hyphal fusions enable efficient nutrient distribution in Colletotrichum graminicola conidiation and symptom development on maize. Microorganisms 10(6):1146. https:\/\/doi.org\/10.3390\/microorganisms10061146","journal-title":"Microorganisms"},{"key":"1620_CR92","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1016\/j.micres.2018.03.007","volume":"210","author":"SA Padder","year":"2018","unstructured":"Padder SA, Prasad R, Shah AH (2018) Quorum sensing: A less known mode of communication among Fungi. Microbiol Res 210:51\u201358","journal-title":"Microbiol Res"},{"key":"1620_CR93","doi-asserted-by":"crossref","unstructured":"Page SC (2015) & others. Imidazole as a small molecule analogue in two-component signal transduction. Biochemistry, 54, 7248\u20137260","DOI":"10.1021\/acs.biochem.5b01082"},{"issue":"8","key":"1620_CR94","doi-asserted-by":"publisher","first-page":"e1003669","DOI":"10.1371\/journal.pgen.1003669","volume":"9","author":"J Palma-Guerrero","year":"2013","unstructured":"Palma-Guerrero J, Hall CR, Kowbel D, Welch J, Taylor JW, Brem RB, Glass NL (2013) Genome wide association identifies novel loci involved in fungal communication. PLoS Genet 9(8):e1003669. https:\/\/doi.org\/10.1371\/journal.pgen.1003669","journal-title":"PLoS Genet"},{"issue":"1","key":"1620_CR95","doi-asserted-by":"publisher","first-page":"foac013","DOI":"10.1093\/femsyr\/foac013","volume":"22","author":"F Posas","year":"2022","unstructured":"Posas F (2022) The HOG pathway and the regulation of osmoadaptive responses in yeast. FEMS Yeast Res 22(1):foac013. https:\/\/doi.org\/10.1093\/femsyr\/foac013","journal-title":"FEMS Yeast Res"},{"issue":"6","key":"1620_CR96","doi-asserted-by":"publisher","first-page":"847","DOI":"10.1128\/EC.00319-09","volume":"9","author":"M Raudaskoski","year":"2010","unstructured":"Raudaskoski M, Kothe E (2010) Basidiomycete mating type genes and pheromone signaling. Eukaryot Cell 9(6):847\u2013859","journal-title":"Eukaryot Cell"},{"key":"1620_CR97","unstructured":"Ravi S (2008) Potential role of cAMP signal transduction pathway in the environmental regulation of Cryptococcus neoformans biofilm formation. The University of Texas at San Antonio"},{"issue":"2","key":"1620_CR98","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1016\/j.tree.2024.10.004","volume":"40","author":"K Runnel","year":"2025","unstructured":"Runnel K, Tedersoo L, Krah F, Piepenbring M, Scheepens J, Hollert H, Johann S, Meyer N, B\u00e4ssler C (2025) Toward Harnessing biodiversity\u2013ecosystem function relationships in fungi. Trends Ecol Evol 40(2):180\u2013190. https:\/\/doi.org\/10.1016\/j.tree.2024.10.004","journal-title":"Trends Ecol Evol"},{"key":"1620_CR99","doi-asserted-by":"publisher","first-page":"e13845","DOI":"10.1111\/ppl.13845","volume":"175","author":"AK Sarkar","year":"2023","unstructured":"Sarkar AK, Sadhukhan S (2023) Unearthing the alteration in plant volatiles induced by mycorrhizal fungi: A shield against plant pathogens. Physiol Plant 175:e13845. https:\/\/doi.org\/10.1111\/ppl.13845","journal-title":"Physiol Plant"},{"key":"1620_CR100","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1016\/j.fgb.2017.06.002","volume":"106","author":"J Schumacher","year":"2017","unstructured":"Schumacher J (2017) How light affects the life of Botrytis. Fungal Genet Biol 106:26\u201341","journal-title":"Fungal Genet Biol"},{"issue":"8","key":"1620_CR101","doi-asserted-by":"publisher","first-page":"2400104","DOI":"10.1002\/gch2.202400104","volume":"8","author":"S Schyck","year":"2024","unstructured":"Schyck S, Marchese P, Amani M, Ablonczy M, Spoelstra L, Jones M, Bathaei Y, Bismarck A, Masania K (2024) Harnessing Fungi signaling in living composites. Global Challenges 8(8):2400104. https:\/\/doi.org\/10.1002\/gch2.202400104","journal-title":"Global Challenges"},{"key":"1620_CR102","doi-asserted-by":"publisher","unstructured":"Shahi A, Houlin Y, Sibongile M (2022) Diterpene biosynthesis in rice blast fungus Magnaporthe. Frontiers in Fungal Biology, 3. https:\/\/doi.org\/10.3389\/ffunb.2022.869823","DOI":"10.3389\/ffunb.2022.869823"},{"key":"1620_CR103","doi-asserted-by":"publisher","unstructured":"Shi H, Bin, Zhu XM, Zhang YR, Liu XH, Lin FC (2021) Appressorium morphogenesis and penetration in rice blast fungus. Tissue Barriers Disease Injury Regeneration 147\u2013157. https:\/\/doi.org\/10.1016\/B978-0-12-818561-2.00002-3","DOI":"10.1016\/B978-0-12-818561-2.00002-3"},{"key":"1620_CR104","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/j.semcdb.2022.02.003","volume":"133","author":"B Sieber","year":"2023","unstructured":"Sieber B, Coronas-Serna JM, Martin SG (2023) A focus on yeast mating: from pheromone signaling to cell-cell fusion. Semin Cell Dev Biol 133:83\u201395. https:\/\/doi.org\/10.1016\/j.semcdb.2022.02.003","journal-title":"Semin Cell Dev Biol"},{"issue":"9","key":"1620_CR105","first-page":"2061","volume":"23","author":"AK Simonsen","year":"2014","unstructured":"Simonsen AK, Stinchcombe JR (2014) Qualifying the impact of planned rarity. Mol Ecol 23(9):2061\u20132067","journal-title":"Mol Ecol"},{"key":"1620_CR107","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1146\/annurev-micro-060321-045510","volume":"75","author":"X Tian","year":"2021","unstructured":"Tian X, Ding H, Ke W, Wang L (2021) Quorum sensing in fungal species. Annu Rev Microbiol 75:449\u2013469","journal-title":"Annu Rev Microbiol"},{"issue":"4","key":"1620_CR108","doi-asserted-by":"publisher","first-page":"2329","DOI":"10.3390\/ijms23042329","volume":"23","author":"R Ty\u015bkiewicz","year":"2022","unstructured":"Ty\u015bkiewicz R, Nowak A, Ozimek E, Jaroszuk-\u015acise\u0142 J (2022) Trichoderma: the current status of its application in agriculture for the biocontrol of fungal phytopathogens and stimulation of plant growth. Int J Mol Sci 23(4):2329","journal-title":"Int J Mol Sci"},{"key":"1620_CR109","doi-asserted-by":"publisher","first-page":"1463987","DOI":"10.3389\/fmicb.2024.1463987","volume":"15","author":"HM Usman Aslam","year":"2024","unstructured":"Usman Aslam HM, Chikh-Ali M, Zhou G, Zhang S, Harris S, Chanda AK, Riaz H, Hameed A, Aslam S, Killiny N (2024) Epigenetic modulation of fungal pathogens: A focus on Magnaporthe oryzae. Front Microbiol 15:1463987. https:\/\/doi.org\/10.3389\/fmicb.2024.1463987","journal-title":"Front Microbiol"},{"issue":"2","key":"1620_CR110","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1016\/j.jgeb.2018.07.001","volume":"16","author":"K Vadakkan","year":"2018","unstructured":"Vadakkan K, Choudhury AA, Gunasekaran R, Hemapriya J, Vijayanand S (2018) Quorum sensing intervened bacterial signaling: pursuit of its cognizance and repression. J Genetic Eng Biotechnol 16(2):239\u2013252. https:\/\/doi.org\/10.1016\/j.jgeb.2018.07.001","journal-title":"J Genetic Eng Biotechnol"},{"key":"1620_CR111","doi-asserted-by":"publisher","first-page":"148","DOI":"10.1038\/s41586-020-2994-1","volume":"589","author":"V Velazhahan","year":"2020","unstructured":"Velazhahan V, Ma N, P\u00e1ndy-Szekeres G, Kooistra AJ, Lee Y, Gloriam DE, Vaidehi N, Tate CG (2020) Structure of the class D GPCR Ste2 dimer coupled to two G proteins. Nature 589:148\u2013153","journal-title":"Nature"},{"issue":"17","key":"1620_CR112","doi-asserted-by":"publisher","first-page":"3102","DOI":"10.3390\/plants12173102","volume":"12","author":"A Wahab","year":"2023","unstructured":"Wahab A, Muhammad M, Munir A, Abdi G, Zaman W, Ayaz A, Khizar C, Reddy P, S. P (2023) Role of arbuscular mycorrhizal Fungi in regulating growth, enhancing productivity, and potentially influencing ecosystems under abiotic and biotic stresses. Plants 12(17):3102. https:\/\/doi.org\/10.3390\/plants12173102","journal-title":"Plants"},{"key":"1620_CR113","doi-asserted-by":"publisher","DOI":"10.1016\/j.azn.2024.11.003","author":"D Wang","year":"2024","unstructured":"Wang D, Wang L, Liu Q, Zhao Y (2024) Virulence factors in biofilm formation and therapeutic strategies for Staphylococcus aureus: A review. Anim Zoonoses. https:\/\/doi.org\/10.1016\/j.azn.2024.11.003","journal-title":"Anim Zoonoses"},{"key":"1620_CR114","doi-asserted-by":"crossref","unstructured":"Watkinson SC (2016) Physiology and adaptation. The fungi. Academic, pp 141\u2013187","DOI":"10.1016\/B978-0-12-382034-1.00005-0"},{"key":"1620_CR115","doi-asserted-by":"crossref","unstructured":"Wedge M\u00c8, Naruzawa ES, Nigg M (2016) & others. Diversity in yeast\u2013mycelium dimorphism response of the Dutch elm disease pathogens: the inoculum size effect. Canadian Journal of Microbiology, 62, 525\u2013529","DOI":"10.1139\/cjm-2015-0795"},{"key":"1620_CR116","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1038\/s41579-020-00508-1","volume":"19","author":"L Weisskopf","year":"2021","unstructured":"Weisskopf L, Schulz S, Garbeva P (2021) Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions. Nat Rev Microbiol 19:391\u2013404. https:\/\/doi.org\/10.1038\/s41579-020-00508-1","journal-title":"Nat Rev Microbiol"},{"key":"1620_CR118","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1016\/J.METENO.2016.05.001","volume":"3","author":"TC Williams","year":"2016","unstructured":"Williams TC, Peng B, Vickers CE, Nielsen LK (2016) The Saccharomyces cerevisiae pheromone-response is a metabolically active stationary phase for bio-production. Metabolic Eng Commun 3:142\u2013152. https:\/\/doi.org\/10.1016\/J.METENO.2016.05.001","journal-title":"Metabolic Eng Commun"},{"key":"1620_CR119","doi-asserted-by":"publisher","first-page":"e00020","DOI":"10.1128\/MMBR.00020-21","volume":"85","author":"AM Wilson","year":"2021","unstructured":"Wilson AM, Wilken PM, Wingfield MJ, Wingfield BD (2021) Genetic networks that govern sexual reproduction in the Pezizomycotina. Microbiol Mol Biol Rev 85:e00020\u201321. https:\/\/doi.org\/10.1128\/MMBR.00020-21","journal-title":"Microbiol Mol Biol Rev"},{"key":"1620_CR120","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1002\/jobm.201500759","volume":"56","author":"T Wongsuk","year":"2016","unstructured":"Wongsuk T, Pumeesat P, Luplertlop N (2016) Fungal quorum sensing molecules: role in fungal morphogenesis and pathogenicity. J Basic Microbiol 56:440\u2013447","journal-title":"J Basic Microbiol"},{"issue":"9","key":"1620_CR121","doi-asserted-by":"publisher","first-page":"1783","DOI":"10.3390\/microorganisms10091783","volume":"10","author":"PP Wright","year":"2022","unstructured":"Wright PP, Ramachandra SS (2022) Quorum sensing and quorum quenching with a focus on cariogenic and periodontopathic oral biofilms. Microorganisms 10(9):1783. https:\/\/doi.org\/10.3390\/microorganisms10091783","journal-title":"Microorganisms"},{"key":"1620_CR122","doi-asserted-by":"publisher","first-page":"100753","DOI":"10.1016\/j.stress.2025.100753","volume":"15","author":"W Wu","year":"2025","unstructured":"Wu W, Fan G (2025) The role of epigenetics in plant pathogens interactions under the changing environments: A systematic review. Plant Stress 15:100753. https:\/\/doi.org\/10.1016\/j.stress.2025.100753","journal-title":"Plant Stress"},{"issue":"6","key":"1620_CR123","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1007\/s00018-022-04353-8","volume":"79","author":"H Yaakoub","year":"2022","unstructured":"Yaakoub H, Mina S, Calenda A, Bouchara P, Papon N (2022) Oxidative stress response pathways in fungi. Cell Mol Life Sci 79(6):333. https:\/\/doi.org\/10.1007\/s00018-022-04353-8","journal-title":"Cell Mol Life Sci"},{"key":"1620_CR124","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgg.2024.10.010","author":"AZ Zaccaron","year":"2024","unstructured":"Zaccaron AZ, Stergiopoulos I (2024) The dynamics of fungal genome organization and its impact on host adaptation and antifungal resistance. J Genet Genomics. https:\/\/doi.org\/10.1016\/j.jgg.2024.10.010","journal-title":"J Genet Genomics"},{"key":"1620_CR125","doi-asserted-by":"publisher","first-page":"103518","DOI":"10.1016\/j.fgb.2021.103518","volume":"148","author":"A Zapparata","year":"2021","unstructured":"Zapparata A, Baroncelli R, Brandstr\u00f6m Durling M, Kubicek CP, Karlsson M, Vannacci G, Sarrocco S (2021) Fungal cross-talk: an integrated approach to study distance communication. Fungal Genet Biol 148:103518. https:\/\/doi.org\/10.1016\/j.fgb.2021.103518","journal-title":"Fungal Genet Biol"},{"issue":"8","key":"1620_CR126","doi-asserted-by":"publisher","first-page":"1062","DOI":"10.1128\/EC.00007-11","volume":"10","author":"H Zhang","year":"2011","unstructured":"Zhang H, Xue C, Kong L, Li G, Xu JR (2011) A Pmk1-interacting gene is involved in appressorium differentiation and plant infection in Magnaporthe oryzae. Eukaryot Cell 10(8):1062\u20131070","journal-title":"Eukaryot Cell"},{"issue":"9","key":"1620_CR127","doi-asserted-by":"publisher","first-page":"648","DOI":"10.3390\/jof10090648","volume":"10","author":"Y Zhang","year":"2024","unstructured":"Zhang Y, Yu W, Lu Y, Wu Y, Ouyang Z, Tu Y, He B (2024) Epigenetic regulation of fungal secondary metabolism. J Fungi 10(9):648. https:\/\/doi.org\/10.3390\/jof10090648","journal-title":"J Fungi"}],"updated-by":[{"DOI":"10.1007\/s10142-025-01652-8","type":"correction","label":"Correction","source":"publisher","updated":{"date-parts":[[2025,8,26]],"date-time":"2025-08-26T00:00:00Z","timestamp":1756166400000}}],"container-title":["Functional & Integrative Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-025-01620-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10142-025-01620-2","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10142-025-01620-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,23]],"date-time":"2026-01-23T08:10:59Z","timestamp":1769155859000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10142-025-01620-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,5,29]]},"references-count":124,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2025,12]]}},"alternative-id":["1620"],"URL":"https:\/\/doi.org\/10.1007\/s10142-025-01620-2","relation":{},"ISSN":["1438-793X","1438-7948"],"issn-type":[{"value":"1438-793X","type":"print"},{"value":"1438-7948","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,5,29]]},"assertion":[{"value":"1 April 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"10 May 2025","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 May 2025","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 May 2025","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 July 2025","order":6,"name":"change_date","label":"Change Date","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Update","order":7,"name":"change_type","label":"Change Type","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The original online version of this article was revised:  In the original version of the manuscript, there are missing captions for Figures 2 and 3. Additionally, three references needs to be added to Table 1 and Figure 2 should be replaced and corrected.  The section Competing interest in declaration needs to be updated to reflect the change in the correction\/erratum article.","order":8,"name":"change_details","label":"Change Details","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"26 August 2025","order":9,"name":"change_date","label":"Change Date","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Correction","order":10,"name":"change_type","label":"Change Type","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"A Correction to this paper has been published:","order":11,"name":"change_details","label":"Change Details","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"https:\/\/doi.org\/10.1007\/s10142-025-01652-8","URL":"https:\/\/doi.org\/10.1007\/s10142-025-01652-8","order":12,"name":"change_details","label":"Change Details","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Dr Mehboob-ur-Rahman is a member of the Editorial Board of \u201cFunctional & Integrative Genomics\u201d.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"111"}}