{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,20]],"date-time":"2026-09-20T15:14:02Z","timestamp":1789917242925,"version":"4.0.1"},"reference-count":67,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2016,4,6]],"date-time":"2016-04-06T00:00:00Z","timestamp":1459900800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"name":"University Research Priority Program of Evolution in Action of the University of Zurich"},{"name":"Grant-in-Aid for Scientific Research on Innovative Areas"},{"name":"Grant-in-Aid for JSPS fellows","award":["13J02516"],"award-info":[{"award-number":["13J02516"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Plant Res"],"published-print":{"date-parts":[[2016,7]]},"DOI":"10.1007\/s10265-016-0822-3","type":"journal-article","created":{"date-parts":[[2016,4,6]],"date-time":"2016-04-06T10:14:39Z","timestamp":1459937679000},"page":"727-736","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations"],"prefix":"10.1007","volume":"129","author":[{"given":"Ayako","family":"Izuno","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Masaomi","family":"Hatakeyama","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tomoaki","family":"Nishiyama","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ichiro","family":"Tamaki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rie","family":"Shimizu-Inatsugi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ryuta","family":"Sasaki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kentaro K.","family":"Shimizu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuji","family":"Isagi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2016,4,6]]},"reference":[{"key":"822_CR1","doi-asserted-by":"publisher","first-page":"e46","DOI":"10.1093\/nar\/gkt1376","volume":"42","author":"S Akama","year":"2014","unstructured":"Akama S, Shimizu-Inatsugi R, Shimizu KK, Sese J (2014) Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. Nucleic Acids Res 42:e46. doi: 10.1093\/nar\/gkt1376","journal-title":"Nucleic Acids Res"},{"key":"822_CR2","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1038\/nbt.1860","volume":"29","author":"EK Al-Dous","year":"2011","unstructured":"Al-Dous EK, George B, Al-Mahmoud ME et al (2011) De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nat Biotechnol 29:521\u2013527. doi: 10.1038\/nbt.1860","journal-title":"Nat Biotechnol"},{"key":"822_CR3","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1093\/bioinformatics\/btu638","volume":"31","author":"S Anders","year":"2015","unstructured":"Anders S, Pyl PT, Huber W (2015) HTSeq\u2014a Python framework to work with high-throughput sequencing data. Bioinformatics 31:166\u2013169. doi: 10.1093\/bioinformatics\/btu638","journal-title":"Bioinformatics"},{"key":"822_CR4","doi-asserted-by":"publisher","first-page":"360","DOI":"10.1038\/nature11837","volume":"495","author":"E Axelsson","year":"2013","unstructured":"Axelsson E, Ratnakumar A, Arendt M-L et al (2013) The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature 495:360\u2013364. doi: 10.1038\/nature11837","journal-title":"Nature"},{"key":"822_CR5","doi-asserted-by":"publisher","first-page":"948","DOI":"10.1186\/1471-2164-15-948","volume":"15","author":"CF Baes","year":"2014","unstructured":"Baes CF, Dolezal MA, Koltes JE et al (2014) Evaluation of variant identification methods for whole genome sequencing data in dairy cattle. BMC Genom 15:948. doi: 10.1186\/1471-2164-15-948","journal-title":"BMC Genom"},{"key":"822_CR6","doi-asserted-by":"publisher","first-page":"960","DOI":"10.1126\/science.1203810","volume":"332","author":"JA Banks","year":"2011","unstructured":"Banks JA, Nishiyama T, Hasebe M et al (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332:960\u2013963. doi: 10.1126\/science.1203810","journal-title":"Science"},{"key":"822_CR7","doi-asserted-by":"publisher","first-page":"1691","DOI":"10.1093\/bioinformatics\/btr174","volume":"27","author":"DW Barnett","year":"2011","unstructured":"Barnett DW, Garrison EK, Quinlan AR et al (2011) BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics 27:1691\u20131692. doi: 10.1093\/bioinformatics\/btr174","journal-title":"Bioinformatics"},{"key":"822_CR8","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114\u20132120. doi: 10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"key":"822_CR9","doi-asserted-by":"publisher","first-page":"e1004410","DOI":"10.1371\/journal.pgen.1004410","volume":"10","author":"Y Brandvain","year":"2014","unstructured":"Brandvain Y, Kenney AM, Flagel L et al (2014) Speciation and Introgression between Mimulus nasutus and Mimulus guttatus. PLoS Genet 10:e1004410. doi: 10.1371\/journal.pgen.1004410","journal-title":"PLoS Genet"},{"key":"822_CR11","doi-asserted-by":"publisher","first-page":"1125","DOI":"10.2307\/1935040","volume":"57","author":"FL Carpenter","year":"1976","unstructured":"Carpenter FL (1976) Plant-pollinator interactions in Hawaii\u2014pollination energetics of Metrosideros collina (Myrtaceae). Ecology 57:1125\u20131144. doi: 10.2307\/1935040","journal-title":"Ecology"},{"key":"822_CR12","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1002\/j.1537-2197.1978.tb06061.x","volume":"65","author":"GD Carr","year":"1978","unstructured":"Carr GD (1978) Chromosome numbers of Hawaiian flowering plants and the significance of cytology in selected taxa. Am J Bot 65:236\u2013242","journal-title":"Am J Bot"},{"key":"822_CR13","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1093\/bioinformatics\/btt310","volume":"30","author":"R Chikhi","year":"2013","unstructured":"Chikhi R, Medvedev P (2013) Informed and automated k-mer size selection for genome assembly. Bioinformatics 30:31\u201337. doi: 10.1093\/bioinformatics\/btt310","journal-title":"Bioinformatics"},{"key":"822_CR14","doi-asserted-by":"publisher","first-page":"188","DOI":"10.1007\/s004420050367","volume":"113","author":"S Cordell","year":"1998","unstructured":"Cordell S, Goldstein G, Mueller-Dombois D et al (1998) Physiological and morphological variation in Metrosideros polymorpha, a dominant Hawaiian tree species, along an altitudinal gradient: the role of phenotypic plasticity. Oecologia 113:188\u2013196. doi: 10.1007\/s004420050367","journal-title":"Oecologia"},{"key":"822_CR15","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1038\/nature11241","volume":"488","author":"A D\u2019Hont","year":"2012","unstructured":"D\u2019Hont A, Denoeud F, Aury J-M et al (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488:213\u2013217. doi: 10.1038\/nature11241","journal-title":"Nature"},{"key":"822_CR16","doi-asserted-by":"publisher","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","volume":"27","author":"P Danecek","year":"2011","unstructured":"Danecek P, Auton A, Abecasis G et al (2011) The variant call format and VCFtools. Bioinformatics 27:2156\u20132158. doi: 10.1093\/bioinformatics\/btr330","journal-title":"Bioinformatics"},{"key":"822_CR17","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1093\/jhered\/est027","volume":"104","author":"N DeBoer","year":"2013","unstructured":"DeBoer N, Stacy EA (2013) Divergence within and among 3 varieties of the endemic tree, \u2018Ohi\u2018a Lehua (Metrosideros polymorpha) on the eastern slope of Hawai\u2019i Island. J Hered 104:449\u2013458. doi: 10.1093\/jhered\/est027","journal-title":"J Hered"},{"key":"822_CR18","doi-asserted-by":"publisher","first-page":"2233","DOI":"10.1038\/nprot.2007.310","volume":"2","author":"J Dolezel","year":"2007","unstructured":"Dolezel J, Greilhuber J, Suda J (2007) Estimation of nuclear DNA content in plants using flow cytometry. Nat Protoc 2:2233\u20132244. doi: 10.1038\/nprot.2007.310","journal-title":"Nat Protoc"},{"key":"822_CR19","doi-asserted-by":"crossref","first-page":"1224","DOI":"10.1002\/j.1537-2197.1992.tb13724.x","volume":"79","author":"DR Drake","year":"1992","unstructured":"Drake DR (1992) Seed dispersal of Metrosideros polymorpha (Myrtaceae): a pioneer tree of Hawaiian lava flows. Am J Bot 79:1224\u20131228","journal-title":"Am J Bot"},{"key":"822_CR20","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1016\/j.tree.2013.09.008","volume":"29","author":"H Ellegren","year":"2014","unstructured":"Ellegren H (2014) Genome sequencing and population genomics in non-model organisms. Trends Ecol Evol 29:51\u201363. doi: 10.1016\/j.tree.2013.09.008","journal-title":"Trends Ecol Evol"},{"key":"822_CR21","doi-asserted-by":"publisher","first-page":"5594","DOI":"10.1111\/mec.12521","volume":"22","author":"MC Fischer","year":"2013","unstructured":"Fischer MC, Rellstab C, Tedder A et al (2013) Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Mol Ecol 22:5594\u20135607. doi: 10.1111\/mec.12521","journal-title":"Mol Ecol"},{"key":"822_CR22","doi-asserted-by":"publisher","DOI":"10.1111\/1755-0998.12443","author":"RR Fitak","year":"2015","unstructured":"Fitak RR, Mohandesan E, Corander J, Burger PA (2015) The de novo genome assembly and annotation of a female domestic dromedary of North African origin. Mol Ecol Resour. doi: 10.1111\/1755-0998.12443","journal-title":"Mol Ecol Resour"},{"key":"822_CR23","doi-asserted-by":"publisher","first-page":"977","DOI":"10.1534\/genetics.108.092221","volume":"180","author":"M Foll","year":"2008","unstructured":"Foll M, Gaggiotti O (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180:977\u2013993. doi: 10.1534\/genetics.108.092221","journal-title":"Genetics"},{"key":"822_CR24","first-page":"295","volume":"46","author":"RT Gavenda","year":"1992","unstructured":"Gavenda RT (1992) Hawaiian quaternary paleo environments: a review of geological, pedological, and botanical evidence. Pac Sci 46:295\u2013307","journal-title":"Pac Sci"},{"key":"822_CR25","doi-asserted-by":"publisher","first-page":"e90240","DOI":"10.1371\/journal.pone.0090240","volume":"9","author":"YA Halley","year":"2014","unstructured":"Halley YA, Dowd SE, Decker JE et al (2014) A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the late Pleistocene. PLoS One 9:e90240. doi: 10.1371\/journal.pone.0090240","journal-title":"PLoS One"},{"key":"822_CR26","doi-asserted-by":"publisher","first-page":"e4698","DOI":"10.1371\/journal.pone.0004698","volume":"4","author":"DT Harbaugh","year":"2009","unstructured":"Harbaugh DT, Wagner WL, Percy DM et al (2009) Genetic structure of the polymorphic Metrosideros (Myrtaceae) complex in the Hawaiian Islands using nuclear microsatellite data. PLoS One 4:e4698. doi: 10.1371\/journal.pone.0004698","journal-title":"PLoS One"},{"key":"822_CR27","unstructured":"Hartl DL, Clark AG (2007) Principles of Population Genetics. Sinauer Associates Incorporated"},{"key":"822_CR28","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1098\/rstb.2011.0245","volume":"367","author":"PA Hohenlohe","year":"2012","unstructured":"Hohenlohe PA, Bassham S, Currey M, Cresko WA (2012) Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philos Trans R Soc Lond B Biol Sci 367:395\u2013408. doi: 10.1098\/rstb.2011.0245","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"key":"822_CR29","doi-asserted-by":"publisher","first-page":"1384","DOI":"10.1101\/gr.170720.113","volume":"24","author":"R Kajitani","year":"2014","unstructured":"Kajitani R, Toshimoto K, Noguchi H et al (2014) Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads. Genome Res 24:1384\u20131395. doi: 10.1101\/gr.170720.113","journal-title":"Genome Res"},{"key":"822_CR30","doi-asserted-by":"publisher","first-page":"2420","DOI":"10.1105\/tpc.114.125583","volume":"26","author":"C Kim","year":"2014","unstructured":"Kim C, Wang X, Lee TH et al (2014) Comparative analysis of Miscanthus and Saccharum reveals a shared whole-genome duplication but different evolutionary fates. Plant Cell 26:2420\u20132429. doi: 10.1105\/tpc.114.125583","journal-title":"Plant Cell"},{"key":"822_CR31","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/BF00033454","volume":"120","author":"K Kitayama","year":"1995","unstructured":"Kitayama K, Mueller-Dombois D (1995) Vegetation changes along gradients of long-term soil development in the Hawaiian montane rainforest zone. Vegetatio 120:1\u201320","journal-title":"Vegetatio"},{"key":"822_CR32","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1006\/anbo.1996.0473","volume":"80","author":"K Kitayama","year":"1997","unstructured":"Kitayama K, Pattison R, Cordell S et al (1997) Ecological and genetic implications of foliar polymorphism in Metrosideros polymorpha Gaud. (Myrtaceae) in a habitat matrix on Mauna Loa. Hawaii. Annals of Botany 80:491\u2013497. doi: 10.1006\/anbo.1996.0473","journal-title":"Hawaii. Annals of Botany"},{"key":"822_CR33","doi-asserted-by":"publisher","first-page":"e1005361","DOI":"10.1371\/journal.pgen.1005361","volume":"11","author":"S Kubota","year":"2015","unstructured":"Kubota S, Iwasaki T, Hanada K et al (2015) A genome scan for genes underlying microgeographic-scale local adaptation in a wild Arabidopsis species. PLoS Genet 11:e1005361. doi: 10.1371\/journal.pgen.1005361","journal-title":"PLoS Genet"},{"key":"822_CR34","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Meth 9:357\u2013359. doi: 10.1038\/nmeth.1923","journal-title":"Nat Meth"},{"key":"822_CR35","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","author":"H Li","year":"2009","unstructured":"Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754\u20131760. doi: 10.1093\/bioinformatics\/btp324","journal-title":"Bioinformatics"},{"key":"822_CR36","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1038\/nature10231","volume":"475","author":"H Li","year":"2011","unstructured":"Li H, Durbin R (2011) Inference of human population history from individual whole-genome sequences. Nature 475:493\u2013496. doi: 10.1038\/nature10231","journal-title":"Nature"},{"key":"822_CR37","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","author":"H Li","year":"2009","unstructured":"Li H, Handsaker B, Wysoker A et al (2009) The sequence Alignment\/Map format and SAMtools. Bioinformatics 25:2078\u20132079. doi: 10.1093\/bioinformatics\/btp352","journal-title":"Bioinformatics"},{"key":"822_CR38","doi-asserted-by":"publisher","first-page":"535","DOI":"10.1111\/nph.12815","volume":"203","author":"AD McKown","year":"2014","unstructured":"McKown AD, Kl\u00e1p\u0161t\u011b J, Guy RD et al (2014) Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa. New Phytol 203:535\u2013553. doi: 10.1111\/nph.12815","journal-title":"New Phytol"},{"key":"822_CR39","doi-asserted-by":"publisher","first-page":"4392","DOI":"10.1111\/mec.13327","volume":"24","author":"WK Meyer","year":"2015","unstructured":"Meyer WK, Venkat A, Kermany AR et al (2015) Evolutionary history inferred from the de novo assembly of a nonmodel organism, the blue-eyed black lemur. Mol Ecol 24:4392\u20134405. doi: 10.1111\/mec.13327","journal-title":"Mol Ecol"},{"key":"822_CR40","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3835\/plantgenome2013.03.0001in","volume":"6","author":"TP Michael","year":"2013","unstructured":"Michael TP, Jackson S (2013) The first 50 plant genomes. Plant Genome 6:1\u20137. doi: 10.3835\/plantgenome2013.03.0001in","journal-title":"Plant Genome"},{"key":"822_CR41","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1038\/nature06856","volume":"452","author":"R Ming","year":"2008","unstructured":"Ming R, Hou S, Feng Y et al (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991\u2013996. doi: 10.1038\/nature06856","journal-title":"Nature"},{"key":"822_CR42","doi-asserted-by":"crossref","first-page":"4321","DOI":"10.1093\/nar\/8.19.4321","volume":"8","author":"MG Murray","year":"1980","unstructured":"Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321\u20134325","journal-title":"Nucleic Acids Res"},{"key":"822_CR43","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1038\/nature13308","volume":"510","author":"AA Myburg","year":"2014","unstructured":"Myburg AA, Grattapaglia D, Tuskan GA et al (2014) The genome of Eucalyptus grandis. Nature 510:356\u2013362. doi: 10.1038\/nature13308","journal-title":"Nature"},{"key":"822_CR44","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1126\/science.1180512","volume":"327","author":"S Ossowski","year":"2010","unstructured":"Ossowski S, Schneeberger K, Lucas-Lled\u00f3 JI (2010) The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327:92\u201394. doi: 10.1126\/science.1180512","journal-title":"Science"},{"key":"822_CR45","doi-asserted-by":"publisher","first-page":"1061","DOI":"10.1093\/bioinformatics\/btm071","volume":"23","author":"G Parra","year":"2007","unstructured":"Parra G, Bradnam K, Korf I (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23:1061\u20131067. doi: 10.1093\/bioinformatics\/btm071","journal-title":"Bioinformatics"},{"key":"822_CR46","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1093\/nar\/gkn916","volume":"37","author":"G Parra","year":"2009","unstructured":"Parra G, Bradnam K, Ning Z et al (2009) Assessing the gene space in draft genomes. Nucleic Acids Res 37:289\u2013297. doi: 10.1093\/nar\/gkn916","journal-title":"Nucleic Acids Res"},{"key":"822_CR47","doi-asserted-by":"publisher","first-page":"1479","DOI":"10.1098\/rspb.2008.0191","volume":"275","author":"DM Percy","year":"2008","unstructured":"Percy DM, Garver AM, Wagner WL et al (2008) Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae). Proc R Soc B Biol Sci 275:1479\u20131490. doi: 10.1098\/rspb.2008.0191","journal-title":"Proc R Soc B Biol Sci"},{"key":"822_CR48","doi-asserted-by":"publisher","first-page":"524","DOI":"10.1071\/BT09114","volume":"57","author":"MM Pra\u00e7a","year":"2009","unstructured":"Pra\u00e7a MM, Carvalho CR, Novaes CRDB (2009) Nuclear DNA content of three Eucalyptus species estimated by flow and image cytometry. Aust J Bot 57:524\u2013528. doi: 10.1071\/BT09114","journal-title":"Aust J Bot"},{"key":"822_CR49","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1038\/nature12228","volume":"499","author":"J Prado-Martinez","year":"2013","unstructured":"Prado-Martinez J, Sudmant PH, Kidd JM et al (2013) Great ape genetic diversity and population history. Nature 499:471\u2013475. doi: 10.1038\/nature12228","journal-title":"Nature"},{"key":"822_CR50","doi-asserted-by":"publisher","first-page":"2429","DOI":"10.1098\/rspb.2002.2175","volume":"269","author":"JP Price","year":"2002","unstructured":"Price JP, Clague DA (2002) How old is the Hawaiian biota? Geology and phylogeny suggest recent divergence. Proc R Soc B Biol Sci 269:2429\u20132435. doi: 10.1098\/rspb.2002.2175","journal-title":"Proc R Soc B Biol Sci"},{"key":"822_CR51","doi-asserted-by":"crossref","first-page":"64","DOI":"10.1126\/science.1150646","volume":"319","author":"SA Rensing","year":"2008","unstructured":"Rensing SA, Lang D, Zimmer AD et al (2008) The physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319:64\u201369","journal-title":"Science"},{"key":"822_CR52","doi-asserted-by":"publisher","first-page":"912","DOI":"10.1038\/ng.3036","volume":"46","author":"A Rimmer","year":"2014","unstructured":"Rimmer A, Phan H, Mathieson I et al (2014) Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications. Nat Genet 46:912\u2013918. doi: 10.1038\/ng.3036","journal-title":"Nat Genet"},{"key":"822_CR53","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1146\/annurev-ecolsys-112414-054249","volume":"46","author":"KK Shimizu","year":"2015","unstructured":"Shimizu KK, Tsuchimatsu T (2015) Evolution of selfing: recurrent patterns in molecular adaptation. Annu Rev Ecol Evol Syst 46:593\u2013622. doi: 10.1146\/annurev-ecolsys-112414-054249","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"822_CR54","doi-asserted-by":"publisher","first-page":"1227","DOI":"10.1111\/nph.12621","volume":"201","author":"GT Slavov","year":"2013","unstructured":"Slavov GT, Nipper R, Robson P et al (2013) Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grass Miscanthus sinensis. New Phytol 201:1227\u20131239. doi: 10.1111\/nph.12621","journal-title":"New Phytol"},{"key":"822_CR55","doi-asserted-by":"publisher","first-page":"831","DOI":"10.1038\/ng.2669","volume":"45","author":"T Slotte","year":"2013","unstructured":"Slotte T, Hazzouri KM, \u00c5gren JA et al (2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet 45:831\u2013835. doi: 10.1038\/ng.2669","journal-title":"Nat Genet"},{"key":"822_CR56","unstructured":"Smit AFA, Hubley R, Green P (2013) RepeatMasker Open-4.0. http:\/\/www.repeatmasker.org"},{"key":"822_CR57","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1038\/hdy.2014.47","volume":"113","author":"EA Stacy","year":"2014","unstructured":"Stacy EA, Johansen JB, Sakishima T et al (2014) Incipient radiation within the dominant Hawaiian tree Metrosideros polymorpha. Heredity 113:334\u2013342. doi: 10.1038\/hdy.2014.47","journal-title":"Heredity"},{"key":"822_CR58","doi-asserted-by":"publisher","first-page":"W309","DOI":"10.1093\/nar\/gkh379","volume":"32","author":"M Stanke","year":"2004","unstructured":"Stanke M, Steinkamp R, Waack S, Morgenstern B (2004) AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res 32:W309\u2013W312. doi: 10.1093\/nar\/gkh379","journal-title":"Nucleic Acids Res"},{"key":"822_CR59","first-page":"361","volume":"37","author":"L Stemmermann","year":"1983","unstructured":"Stemmermann L (1983) Ecological-Studies of Hawaiian Metrosideros in a Successional Context. Pac Sci 37:361\u2013373","journal-title":"Pac Sci"},{"key":"822_CR60","doi-asserted-by":"publisher","first-page":"635","DOI":"10.1038\/nature11119","volume":"485","author":"The Tomato Genome Consortium","year":"2012","unstructured":"The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635\u2013641. doi: 10.1038\/nature11119","journal-title":"Nature"},{"key":"822_CR61","doi-asserted-by":"publisher","DOI":"10.1007\/s00442-015-3416-1","author":"Y Tsujii","year":"2015","unstructured":"Tsujii Y, Onoda Y, Izuno A et al (2015) A quantitative analysis of phenotypic variations of Metrosideros polymorpha within and across populations along environmental gradients on Mauna Loa, Hawaii. Oecologia. doi: 10.1007\/s00442-015-3416-1","journal-title":"Oecologia"},{"key":"822_CR62","doi-asserted-by":"publisher","first-page":"1596","DOI":"10.1126\/science.1128691","volume":"313","author":"GA Tuskan","year":"2006","unstructured":"Tuskan GA, DiFazio S, Jansson S et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596\u20131604. doi: 10.1126\/science.1128691","journal-title":"Science"},{"key":"822_CR63","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1007\/BF00317415","volume":"89","author":"PM Vitousek","year":"1992","unstructured":"Vitousek PM, Aplet G, Turner D, Lockwood JJ (1992) The Mauna Loa environmental matrix\u2014foliar and soil nutrients. Oecologia 89:372\u2013382","journal-title":"Oecologia"},{"key":"822_CR64","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3835\/plantgenome2015.04.0021","volume":"8","author":"GTH Vu","year":"2015","unstructured":"Vu GTH, Schmutzer T, Bull F et al (2015) Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8:1\u201314. doi: 10.3835\/plantgenome2015.04.0021","journal-title":"Plant Genome"},{"key":"822_CR65","doi-asserted-by":"publisher","first-page":"4118","DOI":"10.1073\/pnas.050351197","volume":"97","author":"SD Wright","year":"2000","unstructured":"Wright SD, Yong CG, Dawson JW et al (2000) Riding the Ice Age El Nino? Pacific biogeography and evolution of Metrosideros subg. Metrosideros (Myrtaceae) inferred from nuclear ribosomal DNA. Proc Natl Acad Sci USA 97:4118\u20134123. doi: 10.1073\/pnas.050351197","journal-title":"Proc Natl Acad Sci USA"},{"key":"822_CR66","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/ncomms6188","volume":"5","author":"H Wu","year":"2014","unstructured":"Wu H, Guang X, Al-Fageeh MB et al (2014) Camelid genomes reveal evolution and adaptation to desert environments. Nat Commun 5:1\u20139. doi: 10.1038\/ncomms6188","journal-title":"Nat Commun"},{"key":"822_CR67","doi-asserted-by":"publisher","first-page":"e52249","DOI":"10.1371\/journal.pone.0052249","volume":"7","author":"H Xu","year":"2012","unstructured":"Xu H, Luo X, Qian J et al (2012) FastUniq: a fast de novo duplicates removal tool for paired short reads. PLoS One 7:e52249. doi: 10.1371\/journal.pone.0052249","journal-title":"PLoS One"},{"key":"822_CR68","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/nrg3174","volume":"13","author":"M Yandell","year":"2012","unstructured":"Yandell M, Ence D (2012) A beginner\u2019s guide to eukaryotic genome annotation. Nat Rev Genet 13:1\u201314. doi: 10.1038\/nrg3174","journal-title":"Nat Rev Genet"}],"container-title":["Journal of Plant Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10265-016-0822-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10265-016-0822-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10265-016-0822-3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10265-016-0822-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,6,17]],"date-time":"2022-06-17T05:13:43Z","timestamp":1655442823000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10265-016-0822-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,4,6]]},"references-count":67,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2016,7]]}},"alternative-id":["822"],"URL":"https:\/\/doi.org\/10.1007\/s10265-016-0822-3","relation":{},"ISSN":["0918-9440","1618-0860"],"issn-type":[{"value":"0918-9440","type":"print"},{"value":"1618-0860","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,4,6]]}}}