{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T21:25:31Z","timestamp":1791235531514,"version":"4.1.0"},"reference-count":68,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2015,11,17]],"date-time":"2015-11-17T00:00:00Z","timestamp":1447718400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"name":"The AGIR program (Grenoble Universities) and the ANR","award":["ANR-11-LABX-0004"],"award-info":[{"award-number":["ANR-11-LABX-0004"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Ann Biomed Eng"],"published-print":{"date-parts":[[2016,1]]},"DOI":"10.1007\/s10439-015-1497-y","type":"journal-article","created":{"date-parts":[[2015,11,17]],"date-time":"2015-11-17T17:29:06Z","timestamp":1447781346000},"page":"16-34","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":25,"title":["Atlas-Based Automatic Generation of Subject-Specific Finite Element Tongue Meshes"],"prefix":"10.1007","volume":"44","author":[{"given":"Ahmad","family":"Bijar","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre-Yves","family":"Rohan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pascal","family":"Perrier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yohan","family":"Payan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2015,11,17]]},"reference":[{"key":"1497_CR1","doi-asserted-by":"crossref","unstructured":"Acosta, O., A. Simon, F. Monge, et al. Evaluation of multi-atlas-based segmentation of CT scans in prostate cancer radiotherapy. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1966\u20131969, 2011.","DOI":"10.1109\/ISBI.2011.5872795"},{"key":"1497_CR2","unstructured":"ANSYS Inc, ANSYS Fluent, 2015. Available from: www.ansys.com ."},{"key":"1497_CR3","unstructured":"Badin, P., P. Borel, G. Bailly, L. Revret, M. Baciu, and C. Segebarth. Towards an audiovisual virtual talking head: 3D articulatory modeling of tongue, lips and face based on MRI and video images. In: 5th Speech Production Seminar, 2000 pp. 261\u2013264."},{"issue":"10","key":"1497_CR4","doi-asserted-by":"crossref","first-page":"1235","DOI":"10.1016\/j.medengphy.2009.08.001","volume":"31","author":"MT Bah","year":"2009","unstructured":"Bah, M. T., P. B. Nair, and M. Browne. Mesh morphing for finite element analysis of implant positioning in cementless total hip replacements. Medical engineering and physics, 31(10): 1235\u20131243, 2009.","journal-title":"Med. Eng. Phys."},{"issue":"3","key":"1497_CR5","doi-asserted-by":"crossref","first-page":"232","DOI":"10.1016\/j.cmpb.2009.07.005","volume":"97","author":"MA Baldwin","year":"2010","unstructured":"Baldwin, M. A., J. E. Langenderfer, P. J. Rullkoetter, and P. J. Laz. Development of subject-specific and statistical shape models of the knee using an efficient segmentation and mesh-morphing approach. Computer methods and programs in biomedicine. 97(3): 232\u2013240, 2010.","journal-title":"Comput. Methods Prog. Biomed."},{"issue":"6","key":"1497_CR6","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1016\/j.media.2007.06.011","volume":"11","author":"DC Barber","year":"2007","unstructured":"Barber, D. C., E. Oubel, A. F. Frangi, and D. R. Hose. Efficient computational fluid dynamics mesh generation by image registration. Medical image analysis. 11(6): 648\u2013662, 2007.","journal-title":"Med. Image Anal."},{"key":"1497_CR7","unstructured":"Benzley, S. E., E. Perry, K. Merkley, B. Clark, and G. Sjaardama. A comparison of all hexagonal and all tetrahedral finite element meshes for elastic and elastoplastic analysis. In: Proceedings of the 4th International Meshing Roundtable, vol. 17 pp. 179\u2013191, 1995."},{"issue":"4","key":"1497_CR8","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1016\/j.jbiomech.2004.04.009","volume":"38","author":"SS Blemker","year":"2005","unstructured":"Blemker, S. S., P. M. Pinsky, and S. L. Delp. A 3D model of muscle reveals the causes of nonuniform strains in the biceps brachii. Journal of biomechanics. 38(4): 657\u2013665, 2005.","journal-title":"J. Biomech."},{"key":"1497_CR9","unstructured":"Breiman, L., J. Friedman, C. J. Stone, and R. A. Olshen. Classification and Regression Trees. Boca Raton: CRC Press, 1984."},{"issue":"3","key":"1497_CR10","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1002\/rcs.142","volume":"3","author":"S Buchaillard","year":"2007","unstructured":"Buchaillard, S., M. Brix, P. Perrier, and Y. Payan. Simulations of the consequences of tongue surgery on tongue mobility: implications for speech production in post-surgery conditions. The International Journal of Medical Robotics and Computer Assisted Surgery. 3(3), 252\u2013261, 2007.","journal-title":"Int. J. Med. Robot. Comput. Assist. Surg."},{"issue":"4","key":"1497_CR11","doi-asserted-by":"crossref","first-page":"2033","DOI":"10.1121\/1.3204306","volume":"126","author":"S Buchaillard","year":"2009","unstructured":"Buchaillard, S., P. Perrier, and Y. Payan. A biomechanical model of cardinal vowel production: Muscle activations and the impact of gravity on tongue positioning. The Journal of the Acoustical Society of America. 126(4): 2033\u20132051, 2009.","journal-title":"J. Acoust. Soc. Am."},{"issue":"3","key":"1497_CR12","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1016\/j.media.2010.02.003","volume":"14","author":"M Bucki","year":"2010","unstructured":"Bucki, M., C. Lobos, and Y. Payan. A fast and robust patient specific finite element mesh registration technique: application to 60 clinical cases. Medical image analysis. 14(3): 303\u2013317, 2010.","journal-title":"Med. Image Anal."},{"issue":"3","key":"1497_CR13","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1007\/s00366-010-0198-2","volume":"27","author":"M Bucki","year":"2011","unstructured":"Bucki, M., C. Lobos, Y. Payan, and N. Hitschfeld. Jacobian-based repair method for finite element meshes after registration. Engineering with Computers. 27(3): 285\u2013297, 2011.","journal-title":"Eng. Comput."},{"key":"1497_CR14","unstructured":"Chenchen, T. Generation of Patient-Specific Finite-Element Mesh from 3D Medical Images. Doctoral dissertation, National University of Singapore, 2013."},{"issue":"8","key":"1497_CR15","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1016\/S0021-9290(00)00055-5","volume":"33","author":"B Couteau","year":"2000","unstructured":"Couteau, B., Y. Payan, and S. Lavall\u00e9e. The mesh-matching algorithm: an automatic 3D mesh generator for finite element structures. Journal of biomechanics. 33(8): 1005\u20131009, 2000.","journal-title":"J. Biomech."},{"issue":"3","key":"1497_CR16","doi-asserted-by":"crossref","first-page":"297","DOI":"10.2307\/1932409","volume":"26","author":"LR Dice","year":"1945","unstructured":"Dice, L. R. Measures of the amount of ecologic association between species. Ecology, 26.3: 297\u2013302, 1945.","journal-title":"Ecology"},{"key":"1497_CR17","first-page":"97","volume":"4","author":"TG Ditterrich","year":"1997","unstructured":"Ditterrich, T. G. Machine learning research: four current direction. Artificial Intelligence Magzine. 4: 97\u2013136, 1997.","journal-title":"Artif. Intell. Mag."},{"issue":"9","key":"1497_CR18","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1016\/j.camwa.2004.12.008","volume":"49","author":"Q Du","year":"2005","unstructured":"Du, Q., and D. Wang. The optimal centroidal Voronoi tessellations and the gersho\u2019s conjecture in the three-dimensional space. Computers and Mathematics with Applications. 49.9, 1355\u20131373, 2005.","journal-title":"Comput. Math. Appl."},{"key":"1497_CR19","unstructured":"Fang, Q., and D. A. Boas. Tetrahedral mesh generation from volumetric binary and gray-scale images. In: ISBI\u201909 Proceedings of the 6th IEEE International Conference on Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, pp. 1142\u20131145, 2009."},{"issue":"3","key":"1497_CR20","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1007\/s10237-003-0036-1","volume":"2","author":"JW Fernandez","year":"2004","unstructured":"Fernandez, J. W., P. Mithraratne, S. F. Thrupp, M. H. Tawhai, and P. J. Hunter. Anatomically based geometric modelling of the musculo-skeletal system and other organs. Biomechanics and modeling in mechanobiology. 2(3): 139\u2013155, 2004.","journal-title":"Biomech. Model. Mechanobiol."},{"issue":"4","key":"1497_CR21","doi-asserted-by":"crossref","first-page":"887","DOI":"10.1002\/(SICI)1097-0207(20000210)47:4<887::AID-NME804>3.0.CO;2-H","volume":"47","author":"DA Field","year":"2000","unstructured":"Field, D. A. Qualitative measures for initial meshes. International Journal for Numerical Methods in Engineering. 47.4, 887\u2013906, 2000.","journal-title":"Int. J. Numer. Methods Eng."},{"key":"1497_CR22","unstructured":"Garcia, V., O. Commowick, and G. Malandain. A robust and efficient block matching framework for non linear registration of thoracic CT images. In: Grand Challenges in Medical Image Analysis (MICCAI workshop), 2010, pp. 1\u201310."},{"key":"1497_CR23","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1109\/TPAMI.1984.4767596","volume":"6","author":"S Geman","year":"1984","unstructured":"Geman, S., and D. Geman. Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Transactions on Pattern Analysis and Machine Intelligence. 6: 721\u2013741, 1984.","journal-title":"IEEE Trans. Pattern Anal. Mach. Intell."},{"key":"1497_CR24","first-page":"49","volume":"1","author":"JM Gerard","year":"2003","unstructured":"Gerard, J.M., R. Wilhelms-Tricarico, P. Perrier, and Y. Payan. A 3D dynamical biomechanical tongue model to study speech motor control. Recent Research Developments in Biomechanics. 1: 49\u201364, 2003.","journal-title":"Recent Res. Dev. Biomech."},{"key":"1497_CR25","doi-asserted-by":"crossref","unstructured":"Gerig, G., M. Jomier, and M. Chakos. A new validation tool for assessing and improving 3D object segmentation. In Lecture Notes in Computer Science. Berlin, Germany: Springer, pp. 516\u2013523, 2001.","DOI":"10.1007\/3-540-45468-3_62"},{"issue":"6","key":"1497_CR26","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1016\/j.media.2008.03.006","volume":"12","author":"B Glocker","year":"2008","unstructured":"Glocker, B., N. Komodakis, G. Tziritas, N. Navab, and N. Paragios. Dense image registration through MRFs and efficient linear programming. Medical image analysis. 12(6): 731\u2013741, 2008.","journal-title":"Med. Image Anal."},{"issue":"1","key":"1497_CR27","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1016\/j.medengphy.2010.09.014","volume":"33","author":"L Grassi","year":"2011","unstructured":"Grassi, L., N. Hraiech, E. Schileo, M. Ansaloni, M. Rochette, and M. Viceconti. Evaluation of the generality and accuracy of a new mesh morphing procedure for the human femur. Medical engineering and physics. 33(1): 112\u2013120, 2011.","journal-title":"Med. Eng. Phy."},{"key":"1497_CR28","doi-asserted-by":"crossref","unstructured":"Harandi, M. N., R. Abugharbieh, and S. Fels. 3D segmentation of the tongue in MRI: a minimally interactive model-based approach. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 2014. doi: 10.1080\/21681163.2013.864958 .","DOI":"10.1080\/21681163.2013.864958"},{"issue":"4","key":"1497_CR29","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1016\/j.wocn.2004.09.001","volume":"33","author":"K Iskarous","year":"2005","unstructured":"Iskarous, K. Patterns of tongue movement. Journal of Phonetics, 33(4), 363\u2013381, 2005.","journal-title":"J. Phonetics"},{"issue":"10","key":"1497_CR30","doi-asserted-by":"crossref","first-page":"1178","DOI":"10.1016\/j.finel.2011.05.007","volume":"47","author":"S Ji","year":"2011","unstructured":"Ji, S., J. C. Ford, R. M. Greenwald, J. G. Beckwith, K. D. Paulsen, L. A. Flashman, and T. W. McAllister. Automated subject-specific, hexahedral mesh generation via image registration. Finite Elements in Analysis and Design. 47(10): 1178\u20131185, 2011.","journal-title":"Finite Elements Anal. Des."},{"key":"1497_CR31","unstructured":"Kelly S, Element shape testing. In: Ansys Theory Reference, Chap 13, Ansys, USA, 1998."},{"issue":"5","key":"1497_CR32","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1016\/0141-5425(90)90022-F","volume":"12","author":"JH Keyak","year":"1990","unstructured":"Keyak, J. H., J. M. Meagher, H. B. Skinner, and C. D. Mote. Automated three-dimensional finite element modeling of bone: A new method. Journal of Biomedical Engineering. 12(5): 389\u2013397, 1990.","journal-title":"J. Biomed. Eng."},{"issue":"8","key":"1497_CR33","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1002\/(SICI)1097-0207(20000720)48:8<1165::AID-NME940>3.0.CO;2-Y","volume":"48","author":"PM Knupp","year":"2000","unstructured":"Knupp, P. M. Achieving finite element mesh quality via optimization of the Jacobian matrix norm and associated quantities. Part II-a framework for volume mesh optimization and the condition number of the Jacobian matrix. International Journal for numerical methods in engineering. 48(8): 1165\u20131185, 2000.","journal-title":"Int. J. Numer. Methods Eng."},{"key":"1497_CR34","doi-asserted-by":"crossref","unstructured":"Komodakis, N., G. Tziritas, and N. Paragios. Fast, approximately optimal solutions for single and dynamic MRFs. In: IEEE Conference on Computer Vision and Pattern Recognition (CVPR\u201907), pp. 1\u20138, 2007.","DOI":"10.1109\/CVPR.2007.383095"},{"issue":"6","key":"1497_CR35","doi-asserted-by":"crossref","first-page":"801","DOI":"10.1016\/j.media.2011.06.010","volume":"15","author":"P Lamata","year":"2011","unstructured":"Lamata, P., S. Niederer, D. Nordsletten, D. C. Barber, I. Roy, D. R. Hose, and N. Smith. An accurate, fast and robust method to generate patient-specific cubic Hermite meshes. Medical image analysis. 15(6): 801\u2013813, 2011.","journal-title":"Med. Image Anal."},{"issue":"1","key":"1497_CR36","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1109\/TMI.2012.2231094","volume":"32","author":"P Lamata","year":"2013","unstructured":"Lamata, P., I. Roy, B. Blazevic, A. Crozier, S. Land, S. A. Niederer, D. Hose, and N. P. Smith. Quality metrics for high order meshes: analysis of the mechanical simulation of the heart beat. IEEE Transactions on Medical Imaging, 32(1): 130\u2013138, 2013.","journal-title":"IEEE Trans. Med. Imaging"},{"issue":"1","key":"1497_CR37","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1016\/j.neuroimage.2010.11.013","volume":"55","author":"C Lederman","year":"2011","unstructured":"Lederman, C., A. Joshi, I. Dinov, L. Vese, A. Toga, and J. D. Van Horn. The generation of tetrahedral mesh models for neuroanatomical MRI, NeuroImage. 55(1): 153\u2013164, 2011.","journal-title":"NeuroImage"},{"issue":"8","key":"1497_CR38","doi-asserted-by":"crossref","first-page":"714","DOI":"10.1016\/j.compmedimag.2014.07.004","volume":"38","author":"J Lee","year":"2014","unstructured":"Lee, J., J. Woo, F. Xing, E. Z. Murano, M. Stone, and J. L. Prince. Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI. Computerized Medical Imaging and Graphics. 38(8): 714\u2013724, 2014.","journal-title":"Comput. Med. Imaging Graph."},{"key":"1497_CR39","unstructured":"Li, S. Z. Markov random field modeling in image analysis. Springer Science Business Media, 2009."},{"key":"1497_CR40","doi-asserted-by":"crossref","unstructured":"Li, B., G. E. Christensen, J. Dill, E. A. Hoffman, and J. M. Reinhardt. 3D intersubject warping and registration of pulmonary CT images for a human lung model. In Medical Imaging, International Society for Optics and Photonics, pp. 324\u2013335, 2002.","DOI":"10.1117\/12.463598"},{"key":"1497_CR41","unstructured":"Lobos, C. A set of mixed-elements patterns for domain boundary approximation in hexahedral meshes. In MMVR, pp. 268\u2013272, 2013."},{"key":"1497_CR42","doi-asserted-by":"crossref","first-page":"126","DOI":"10.4018\/978-1-60566-733-1.ch009","volume-title":"Informatics in Oral Medicine: Advanced Techniques in Clinical and Diagnostic Technologies","author":"C Lobos","year":"2010","unstructured":"Lobos, C., Y. Payan, and N. Hitschfeld. Techniques for the generation of 3D Finite Element Meshes of human organs. In A. Daskalaki (Ed.), Informatics in Oral Medicine: Advanced Techniques in Clinical and Diagnostic Technologies. Hershey, PA: Medical Information Science Reference. 126\u2013158, 2010."},{"issue":"2","key":"1497_CR43","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1109\/42.563664","volume":"16","author":"F Maes","year":"1997","unstructured":"Maes, F., A. Collignon, D. Vandermeulen, G. Marchal, and P. Suetens. Multimodality image registration by maximization of mutual information. IEEE Transactions on Medical Imaging. 16(2): 187\u2013198, 1997.","journal-title":"IEEE Trans. Med. Imaging"},{"issue":"4","key":"1497_CR44","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.1148\/rg.2015140232","volume":"35","author":"A Mansoor","year":"2015","unstructured":"Mansoor, A., U. BAGCI, B. FOSTER, et al. Segmentation and Image Analysis of Abnormal Lungs at CT: Current Approaches, Challenges, and Future Trends. RadioGraphics. 35(4), 1056\u20131076, 2015.","journal-title":"RadioGraphics"},{"issue":"1","key":"1497_CR45","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1109\/TMI.2003.809072","volume":"22","author":"D Mattes","year":"2003","unstructured":"Mattes, D., D. R. Haynor, H. Vesselle, T. K. Lewellen, and W. Eubank. PET-CT image registration in the chest using free-form deformations. IEEE Transactions on Medical Imaging. 22(1), 120\u2013128, 2003.","journal-title":"IEEE Trans. Med. Imaging"},{"key":"1497_CR46","unstructured":"Mitchell, S. A., A Technical History of Hexahedral Mesh Generation. In: 11th International Meshing Roundtable, short course, 2002."},{"key":"1497_CR47","doi-asserted-by":"crossref","unstructured":"Mohamed, A., and C. Davatzikos. Finite element mesh generation and remeshing from segmented medical images. In: ISBI\u201904 Proceedings of the 6th IEEE International Conference on Symposium on Biomedical Imaging: From Nano to Macro, vol. 1, pp. 420\u2013423, 2004.","DOI":"10.1109\/ISBI.2004.1398564"},{"key":"1497_CR48","unstructured":"Molino, N., R. Bridson, J. Teran, and R. Fedkiw. A Crystalline, Red Green Strategy for Meshing Highly Deformable Objects with Tetrahedra. In: 12th International Meshing Roundtable, Santa Fe, New Mexico, USA. 103\u2013114, 2003."},{"issue":"11","key":"1497_CR49","doi-asserted-by":"crossref","first-page":"1901","DOI":"10.1109\/TMI.2011.2158349","volume":"30","author":"K Murphy","year":"2011","unstructured":"Murphy, K., B. Van Ginneken, J. M. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao et al. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. Medical Imaging, IEEE Transactions on 30, no. 11: 1901\u20131920, 2011.","journal-title":"IEEE Trans. Med. Imaging"},{"issue":"6","key":"1497_CR50","doi-asserted-by":"crossref","first-page":"1909","DOI":"10.1044\/1092-4388(2013\/12-0222)","volume":"56","author":"MA Nazari","year":"2013","unstructured":"Nazari, M. A., P. Perrier, and Y. Payan. The Distributed Lambda (\u03bb) Model (DLM): a 3D, Finite-element muscle model based on feldman\u2019s \u03bb model assessment of orofacial gestures. Journal of speech, language, and hearing research. 56(6): 1909\u20131923, 2013.","journal-title":"J. Speech Lang. Hear. Res."},{"issue":"1","key":"1497_CR51","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.cviu.2008.06.007","volume":"112","author":"K Nikos","year":"2008","unstructured":"Nikos, K., G. Tziritas, and N. Paragios. Performance vs computational efficiency for optimizing single and dynamic MRFs: Setting the state of the art with primal-dual strategies. Computer Vision and Image Understanding. 112(1): 14\u201329, 2008.","journal-title":"Comput. Vis. Image Underst."},{"key":"1497_CR52","doi-asserted-by":"crossref","unstructured":"Powell, M.J.D. A fast algorithm for nonlinearly constrained optimization calculations. In: Numerical Analysis, Berlin: Springer, pp. 144\u2013157, 1987.","DOI":"10.1007\/BFb0067703"},{"key":"1497_CR53","doi-asserted-by":"crossref","unstructured":"Roche, A., G. Malandain, X. Pennec, and N. Ayache. The correlation ratio as a new similarity measure for multimodal image registration. In: Medical Image Computing and Computer-Assisted Interventation-MICCAI, Springer, Berlin, pp. 1115\u20131124, 1998.","DOI":"10.1007\/BFb0056301"},{"issue":"sup1","key":"1497_CR54","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1080\/10255842.2014.931682","volume":"17","author":"P-Y Rohan","year":"2014","unstructured":"Rohan, P-Y., C. Lobos, M. A. Nazari, P. Perrier, and Y. Payan. Finite element modelling of nearly incompressible materials and volumetric locking: a case study. Computer methods in biomechanics and biomedical engineering. 17(sup1), 192\u2013193, 2014.","journal-title":"Comput. Methods Biomech. Biomed. Eng."},{"key":"1497_CR55","doi-asserted-by":"crossref","unstructured":"Rueckert, D., P. Aljabar, R. A. Heckemann, J. V. Hajnal, and A. Hammers. Diffeomorphic registration using B-splines. In: Medical Image Computing and Computer-Assisted Intervention \u201cMICCAI, Berlin: Springer, pp. 702\u2013709, 2006.","DOI":"10.1007\/11866763_86"},{"issue":"8","key":"1497_CR56","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1109\/42.796284","volume":"18","author":"D Rueckert","year":"1999","unstructured":"Rueckert, D., L. I. Sonoda, C. Hayes, D. LG Hill, M. O. Leach, and D. J. Hawkes. Non-rigid registration using free-form deformations: Application to breast MR images, IEEE Transactions on Image Processing. 18(8): 712\u2013721, 1999.","journal-title":"IEEE Trans. Image Process."},{"issue":"7","key":"1497_CR57","doi-asserted-by":"crossref","first-page":"1381","DOI":"10.1016\/j.jbiomech.2008.02.019","volume":"41","author":"IA Sigal","year":"2008","unstructured":"Sigal, I. A., M. R. Hardisty, and C. M. Whyne. Mesh-morphing algorithms for specimen-specific finite element modeling. Journal of biomechanics, 41(7): 1381\u20131389, 2008.","journal-title":"J. Biomech."},{"issue":"19","key":"1497_CR58","doi-asserted-by":"crossref","first-page":"3327","DOI":"10.1002\/(SICI)1097-0207(19961015)39:19<3327::AID-NME2>3.0.CO;2-H","volume":"39","author":"TJ Tautges","year":"1996","unstructured":"Tautges, T. J., T. Blacker, and S. A. Mitchell. The whisker weaving algorithm: A connectivity-based method for constructing all-hexahedral finite element meshes. International Journal for Numerical Methods in Engineering. 39.19: 3327\u20133349, 1996.","journal-title":"Int. J. Numer. Methods Eng."},{"issue":"7","key":"1497_CR59","doi-asserted-by":"crossref","first-page":"2934","DOI":"10.1118\/1.3147146","volume":"36","author":"EM Rikxoort Van","year":"2009","unstructured":"Van Rikxoort, E. M., B. D. Hoop, M. A. Viergever, M. Prokop, and B. V. Ginneken. Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection. Medical physics 36, no. 7: 2934\u20132947, 2009.","journal-title":"Med. Phys."},{"issue":"1","key":"1497_CR60","doi-asserted-by":"crossref","first-page":"S61","DOI":"10.1016\/j.neuroimage.2008.10.040","volume":"45","author":"T Vercauteren","year":"2009","unstructured":"Vercauteren, T., X. Pennec, A. Perchant, and N. Ayache. Diffeomorphic demons: Efficient non-parametric image registration. NeuroImage. 45(1): S61\u2013S72, 2009.","journal-title":"NeuroImage"},{"issue":"1-2","key":"1497_CR61","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1615\/CritRevBiomedEng.v31.i12.20","volume":"31","author":"M Viceconti","year":"2003","unstructured":"Viceconti, M., and F. Taddei. Automatic generation of finite element meshes from computed tomography data. Critical Reviews\u2122 in Biomedical Engineering. 31(1-2): 27\u201372, 2003.","journal-title":"Critical Reviews\u2122 in Biomedical Engineering"},{"key":"1497_CR62","doi-asserted-by":"crossref","first-page":"1597","DOI":"10.1016\/j.jbiomech.2003.12.030","volume":"37","author":"M Viceconti","year":"2004","unstructured":"Viceconti, M., M. Davinelli, F. Taddei, and A. Cappello. Automatic generation of accurate subject-specific bone finite element models to be used in clinical studies, Journal of Biomechanics. 37:1597\u20131605, 2004.","journal-title":"J. Biomech."},{"key":"1497_CR63","doi-asserted-by":"crossref","first-page":"2005","DOI":"10.1002\/nme.1620371203","volume":"12","author":"NP Weatherill","year":"1994","unstructured":"Weatherill, N. P., and O. Hassan. Efficient three-dimensional Delaunay triangulation with automatic point creation and imposed boundary constraints. International Journal for Numerical Methods in Engineering. 12: 2005\u20132039, 1994.","journal-title":"Int. J. Numer. Methods Eng."},{"key":"1497_CR64","volume-title":"Numerical Optimization","author":"SJ Wright","year":"1999","unstructured":"Wright, S. J., and J. Nocedal. Numerical optimization. Vol. 2. New York: Springer, 1999."},{"key":"1497_CR65","doi-asserted-by":"crossref","unstructured":"Zhang, L., and J. M. Reinhardt. 3D pulmonary CT image registration with a standard lung atlas. In: Medical Imaging. International Society for Optics and Photonics, pp. 67\u201377, 2000.","DOI":"10.1117\/12.383441"},{"issue":"48","key":"1497_CR66","doi-asserted-by":"crossref","first-page":"5083","DOI":"10.1016\/j.cma.2004.11.026","volume":"194","author":"Y Zhang","year":"2005","unstructured":"Zhang, Y., C. Bajaj, and B. S. Sohn. 3D finite element meshing from imaging data, Computer Methods in Applied Mechanics and Engineering. 194(48): 5083\u20135106, 2005.","journal-title":"Comput. Methods Appl. Mech. Eng."},{"key":"1497_CR67","doi-asserted-by":"crossref","unstructured":"Zhang, Y., T. JR. Hughes, and C. L. Bajaj. Automatic 3D mesh generation for a domain with multiple materials. In: Proceedings of the 16th International Meshing Roundtable, Springer, Berlin Heidelberg, pp. 367\u2013386, 2008.","DOI":"10.1007\/978-3-540-75103-8_21"},{"issue":"9","key":"1497_CR68","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1016\/j.cviu.2012.11.018","volume":"117","author":"S Zhang","year":"2013","unstructured":"Zhang, S., Y. Zhan, X. Cui, M. Gao, J. Huang, and D. Metaxas. 3D anatomical shape atlas construction using mesh quality preserved deformable models. Computer Vision and Image Understanding, 117(9): 1061\u20131071, 2013.","journal-title":"Comput. Vis. Image Underst."}],"container-title":["Annals of Biomedical Engineering"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10439-015-1497-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10439-015-1497-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10439-015-1497-y","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,1]],"date-time":"2019-09-01T16:38:46Z","timestamp":1567355926000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10439-015-1497-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,11,17]]},"references-count":68,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,1]]}},"alternative-id":["1497"],"URL":"https:\/\/doi.org\/10.1007\/s10439-015-1497-y","relation":{},"ISSN":["0090-6964","1573-9686"],"issn-type":[{"value":"0090-6964","type":"print"},{"value":"1573-9686","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,11,17]]}}}