{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,27]],"date-time":"2025-05-27T21:09:52Z","timestamp":1748380192767,"version":"3.37.3"},"reference-count":94,"publisher":"Springer Science and Business Media LLC","issue":"8","license":[{"start":{"date-parts":[[2022,6,9]],"date-time":"2022-06-09T00:00:00Z","timestamp":1654732800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2022,6,9]],"date-time":"2022-06-09T00:00:00Z","timestamp":1654732800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100002322","name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","doi-asserted-by":"publisher","award":["88887.158496\/2017-00","3255\/2013"],"award-info":[{"award-number":["88887.158496\/2017-00","3255\/2013"]}],"id":[{"id":"10.13039\/501100002322","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010688","name":"Instituto Nacional de Ci\u00eancia e Tecnologia da Criosfera","doi-asserted-by":"publisher","award":["472153\/2013-7"],"award-info":[{"award-number":["472153\/2013-7"]}],"id":[{"id":"10.13039\/501100010688","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100019696","name":"Universidade do Estado da Bahia","doi-asserted-by":"crossref","award":["3.145\/2016"],"award-info":[{"award-number":["3.145\/2016"]}],"id":[{"id":"10.13039\/100019696","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Antonie van Leeuwenhoek"],"published-print":{"date-parts":[[2022,8]]},"DOI":"10.1007\/s10482-022-01746-4","type":"journal-article","created":{"date-parts":[[2022,6,9]],"date-time":"2022-06-09T11:21:23Z","timestamp":1654773683000},"page":"1009-1029","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Taxonomy, comparative genomics and evolutionary insights of Penicillium ucsense: a novel species in series Oxalica"],"prefix":"10.1007","volume":"115","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6699-2899","authenticated-orcid":false,"given":"Alexandre Rafael","family":"Lenz","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1322-3153","authenticated-orcid":false,"given":"Eduardo","family":"Balbinot","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5006-4833","authenticated-orcid":false,"given":"Fernanda Pessi","family":"de Abreu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4713-4527","authenticated-orcid":false,"given":"Nikael Souza","family":"de Oliveira","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2197-1119","authenticated-orcid":false,"given":"Roselei Claudete","family":"Fontana","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3472-3907","authenticated-orcid":false,"given":"Scheila","family":"de Avila e Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0392-9005","authenticated-orcid":false,"given":"Myung Soo","family":"Park","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2864-3449","authenticated-orcid":false,"given":"Young Woon","family":"Lim","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4893-4438","authenticated-orcid":false,"given":"Jos","family":"Houbraken","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7410-4337","authenticated-orcid":false,"given":"Marli","family":"Camassola","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1969-1740","authenticated-orcid":false,"given":"Aldo Jos\u00e9 Pinheiro","family":"Dillon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2022,6,9]]},"reference":[{"key":"1746_CR1","doi-asserted-by":"publisher","unstructured":"Adams DJ (2004) Fungal cell wall chitinases and glucanases. Microbiology+ 150:2029\u201335. https:\/\/doi.org\/10.1099\/mic.0.26980-0","DOI":"10.1099\/mic.0.26980-0"},{"key":"1746_CR2","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1016\/j.simyco.2018.10.001","volume":"91","author":"MV Aguilar-Pontes","year":"2018","unstructured":"Aguilar-Pontes MV, Brandl J, McDonnell E et al (2018) The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. Stud Mycol 91:61\u201378. https:\/\/doi.org\/10.1016\/j.simyco.2018.10.001","journal-title":"Stud Mycol"},{"key":"1746_CR3","doi-asserted-by":"publisher","first-page":"420","DOI":"10.1038\/s41587-019-0036-z","volume":"37","author":"JJ Almagro Armenteros","year":"2019","unstructured":"Almagro Armenteros JJ, Tsirigos KD, S\u00f8nderby CK et al (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks. Nat Biotechnol 37:420\u2013423. https:\/\/doi.org\/10.1038\/s41587-019-0036-z","journal-title":"Nat Biotechnol"},{"key":"1746_CR4","unstructured":"Andrews S, Krueger F, Seconds-Pichon A, Biggins F, Wingett S (2015) FastQC v0.11.5. Computer program and documentation distributed by Babraham Bioinformatics. http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc"},{"key":"1746_CR5","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","volume":"19","author":"A Bankevich","year":"2012","unstructured":"Bankevich A, Nurk S, Antipov D et al (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Comput Biol 19:455\u2013477. https:\/\/doi.org\/10.1089\/cmb.2012.0021","journal-title":"Comput Biol"},{"key":"1746_CR6","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/s13100-015-0041-9","volume":"6","author":"W Bao","year":"2015","unstructured":"Bao W, Kojima KK, Kohany O (2015) Repbase Update, a database of repetitive elements in eukaryotic genomes. Mobile DNA-UK 6:11. https:\/\/doi.org\/10.1186\/s13100-015-0041-9","journal-title":"Mobile DNA-UK"},{"key":"1746_CR7","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1080\/mmy.39.1.9.17","volume":"39","author":"M Bernard","year":"2001","unstructured":"Bernard M, Latg\u00e9 JP (2001) Aspergillus fumigatus cell wall: composition and biosynthesis. Med Mycol 39:9\u201317. https:\/\/doi.org\/10.1080\/mmy.39.1.9.17","journal-title":"Med Mycol"},{"key":"1746_CR8","doi-asserted-by":"publisher","first-page":"D555","DOI":"10.1093\/nar\/gkw960","volume":"45","author":"K Blin","year":"2017","unstructured":"Blin K, Medema MH, Kottmann R, Lee SY, Weber T (2017) The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. Nucleic Acids Res 45:D555\u2013D559. https:\/\/doi.org\/10.1093\/nar\/gkw960","journal-title":"Nucleic Acids Res"},{"key":"1746_CR9","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"C Camacho","year":"2009","unstructured":"Camacho C, Coulouris G, Avagyan V et al (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421. https:\/\/doi.org\/10.1186\/1471-2105-10-421","journal-title":"BMC Bioinformatics"},{"key":"1746_CR10","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1111\/j.1365-2672.2006.03098.x","volume":"102","author":"M Camassola","year":"2006","unstructured":"Camassola M, Dillon AJP (2006) Effect of methylxanthines on production of cellulases by Penicillium echinulatum. Appl Microbiol 102:478\u2013485. https:\/\/doi.org\/10.1111\/j.1365-2672.2006.03098.x","journal-title":"Appl Microbiol"},{"key":"1746_CR11","doi-asserted-by":"publisher","first-page":"2196","DOI":"10.1111\/j.1365-2672.2007.03458.x","volume":"103","author":"M Camassola","year":"2007","unstructured":"Camassola M, Dillon AJP (2007) Production of cellulases and hemicellulases by Penicillium echinulatum grown on pretreated sugar cane bagasse and wheat bran in solid-state fermentation. Appl Microbiol 103:2196\u20132204. https:\/\/doi.org\/10.1111\/j.1365-2672.2007.03458.x","journal-title":"Appl Microbiol"},{"key":"1746_CR12","doi-asserted-by":"publisher","first-page":"642","DOI":"10.1016\/j.indcrop.2008.09.008","volume":"29","author":"M Camassola","year":"2009","unstructured":"Camassola M, Dillon AJP (2009) Biological pretreatment of sugar cane bagasse for the production of cellulases and xylanases by Penicillium echinulatum. Ind Crop Prod 29:642\u2013647. https:\/\/doi.org\/10.1016\/j.indcrop.2008.09.008","journal-title":"Ind Crop Prod"},{"key":"1746_CR13","doi-asserted-by":"publisher","first-page":"1889","DOI":"10.1007\/s12010-010-8967-3","volume":"162","author":"M Camassola","year":"2010","unstructured":"Camassola M, Dillon AJP (2010) Cellulases and xylanases production by Penicillium echinulatum grown on sugar cane bagasse in solid-state fermentation. Appl Biochem Biotech 162:1889\u20131900. https:\/\/doi.org\/10.1007\/s12010-010-8967-3","journal-title":"Appl Biochem Biotech"},{"key":"1746_CR14","doi-asserted-by":"publisher","first-page":"5316","DOI":"10.1021\/ef3009162","volume":"26","author":"M Camassola","year":"2012","unstructured":"Camassola M, Dillon AJP (2012) Steam-exploded sugar cane bagasse for on-site production of cellulases and xylanases by Penicillium echinulatum. Energ Fuel 26:5316\u20135320. https:\/\/doi.org\/10.1021\/ef3009162","journal-title":"Energ Fuel"},{"key":"1746_CR15","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1080\/10242420400024532","volume":"22","author":"M Camassola","year":"2004","unstructured":"Camassola M, De Bittencourt LR, Shenem NT, Andreaus J, Dillon AJP (2004) Characterization of the cellulase complex of Penicillium echinulatum. Biocatal Biotransfor 22:391\u2013396. https:\/\/doi.org\/10.1080\/10242420400024532","journal-title":"Biocatal Biotransfor"},{"key":"1746_CR16","unstructured":"Carrau JL, Dillon AJP, Ribeiro RTS, Leygue-Alba NMR, Azevedo JL (1981) Produ\u00e7\u00e3o de enzimas celulol\u00edticas por microrganismos. In: Simp\u00f3sio Internacional de Engenharia Gen\u00e9tica. Piracicaba, SP. pp 39."},{"key":"1746_CR17","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1093\/bioinformatics\/btt310","volume":"30","author":"R Chikhi","year":"2014","unstructured":"Chikhi R, Medvedev P (2014) Informed and automated k-mer size selection for genome assembly. Bioinformatics 30:31\u201337. https:\/\/doi.org\/10.1093\/bioinformatics\/btt310","journal-title":"Bioinformatics"},{"key":"1746_CR18","first-page":"532","volume":"15","author":"P Chomczynski","year":"1993","unstructured":"Chomczynski P (1993) A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques 15:532\u2013537","journal-title":"Biotechniques"},{"key":"1746_CR19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0011147","volume":"5","author":"AE Darling","year":"2010","unstructured":"Darling AE, Mau B, Perna NT (2010) Progressivemauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS ONE 5:e11147. https:\/\/doi.org\/10.1371\/journal.pone.0011147","journal-title":"PLoS ONE"},{"key":"1746_CR20","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1038\/nmeth.2109","volume":"9","author":"D Darriba","year":"2012","unstructured":"Darriba D, Taboada GL, Doallo R, Posada D (2012) JModelTest 2: More models, new heuristics and parallel computing. Nat Methods 9:772. https:\/\/doi.org\/10.1038\/nmeth.2109","journal-title":"Nat Methods"},{"key":"1746_CR21","doi-asserted-by":"publisher","first-page":"740","DOI":"10.1007\/s00253-005-0122-7","volume":"70","author":"AJP Dillon","year":"2006","unstructured":"Dillon AJP, Zorgi C, Camassola M, Henriques JAP (2006) Use of 2-deoxyglucose in liquid media for the selection of mutant strains of Penicillium echinulatum producing increased cellulase and \u03b2-glucosidase activities. Appl Microbiol Biot 70:740\u2013746. https:\/\/doi.org\/10.1007\/s00253-005-0122-7","journal-title":"Appl Microbiol Biot"},{"key":"1746_CR22","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1111\/j.1365-2672.2011.05026.x","volume":"111","author":"AJP Dillon","year":"2011","unstructured":"Dillon AJP, Bettio M, Pozzan FG, Andrighetti T, Camassola M (2011) A new Penicillium echinulatum strain with faster cellulase secretion obtained using hydrogen peroxide mutagenesis and screening with 2-deoxyglucose. Appl Microbiol 111:48\u201353. https:\/\/doi.org\/10.1111\/j.1365-2672.2011.05026.x","journal-title":"Appl Microbiol"},{"key":"1746_CR23","doi-asserted-by":"publisher","first-page":"597","DOI":"10.1016\/j.biortech.2013.07.124","volume":"146","author":"L dos Reis","year":"2013","unstructured":"dos Reis L, Fontana RC, da Silva DP et al (2013) Increased production of cellulases and xylanases by Penicillium echinulatum S1M29 in batch and fed-batch culture. Bioresource Technol 146:597\u2013603. https:\/\/doi.org\/10.1016\/j.biortech.2013.07.124","journal-title":"Bioresource Technol"},{"key":"1746_CR24","doi-asserted-by":"publisher","first-page":"931","DOI":"10.1007\/s00253-011-3777-2","volume":"93","author":"HC Eisenman","year":"2012","unstructured":"Eisenman HC, Casadevall A (2012) Synthesis and assembly of fungal melanin. Appl Microbiol Biot 93:931\u2013940. https:\/\/doi.org\/10.1007\/s00253-011-3777-2","journal-title":"Appl Microbiol Biot"},{"key":"1746_CR25","doi-asserted-by":"publisher","first-page":"D427","DOI":"10.1093\/nar\/gky995","volume":"47","author":"S El-Gebali","year":"2019","unstructured":"El-Gebali S, Mistry J, Bateman A et al (2019) The Pfam protein families database in 2019. Nucleic Acids Res 47:D427\u2013D432. https:\/\/doi.org\/10.1093\/nar\/gky995","journal-title":"Nucleic Acids Res"},{"key":"1746_CR26","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1186\/s40793-018-0318-y","volume":"13","author":"SC Epstein","year":"2018","unstructured":"Epstein SC, Charkoudian LK, Medema MH (2018) A standardized workflow for submitting data to the Minimum Information about a Biosynthetic Gene cluster (MIBiG) repository: prospects for research-based educational experiences. Stand Genomic Sci 13:16. https:\/\/doi.org\/10.1186\/s40793-018-0318-y","journal-title":"Stand Genomic Sci"},{"key":"1746_CR27","doi-asserted-by":"publisher","unstructured":"Free SJ (2013) Fungal cell wall organization and biosynthesis. In: Friedmann T, Dunlap JC, Goodwin SF (ed) Advances in genetics. Academic Press, New York, pp 33\u201382. https:\/\/doi.org\/10.1016\/B978-0-12-407677-8.00002-6","DOI":"10.1016\/B978-0-12-407677-8.00002-6"},{"key":"1746_CR28","doi-asserted-by":"publisher","first-page":"246","DOI":"10.3390\/jof6040246","volume":"6","author":"C Gostin\u010dar","year":"2020","unstructured":"Gostin\u010dar C (2020) Towards genomic criteria for delineating fungal species. J Fungi (Basel) 6:246. https:\/\/doi.org\/10.3390\/jof6040246","journal-title":"J Fungi (Basel)"},{"key":"1746_CR29","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1038\/nbt.1883","volume":"29","author":"MG Grabherr","year":"2011","unstructured":"Grabherr MG, Haas BJ, Yassour M et al (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29:644\u2013652. https:\/\/doi.org\/10.1038\/nbt.1883","journal-title":"Nat Biotechnol"},{"key":"1746_CR30","unstructured":"Green MR, Sambrook JF (2012) Molecular cloning: a laboratory manual, Vol. 1. 4th ed. Press CSHL, Cold Springs Harbour Press, New York."},{"key":"1746_CR31","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","volume":"29","author":"A Gurevich","year":"2013","unstructured":"Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072\u20131075. https:\/\/doi.org\/10.1093\/bioinformatics\/btt086","journal-title":"Bioinformatics"},{"key":"1746_CR32","doi-asserted-by":"publisher","first-page":"R7","DOI":"10.1186\/gb-2008-9-1-r7","volume":"9","author":"BJ Haas","year":"2008","unstructured":"Haas BJ, Salzberg SL, Zhu W et al (2008) Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol 9:R7. https:\/\/doi.org\/10.1186\/gb-2008-9-1-r7","journal-title":"Genome Biol"},{"key":"1746_CR33","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1016\/j.simyco.2020.05.002","volume":"95","author":"J Houbraken","year":"2020","unstructured":"Houbraken J, Kocsub\u00e9 S, Visagie CM et al (2020) Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): an overview of families, genera, subgenera, sections, series and species. Stud Mycol 95:5\u2013169. https:\/\/doi.org\/10.1016\/j.simyco.2020.05.002","journal-title":"Stud Mycol"},{"key":"1746_CR34","doi-asserted-by":"publisher","first-page":"2115","DOI":"10.1093\/molbev\/msx148","volume":"34","author":"J Huerta-Cepas","year":"2017","unstructured":"Huerta-Cepas J, Forslund K, Coelho LP et al (2017) Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. Mol Biol Evol 34:2115\u20132122. https:\/\/doi.org\/10.1093\/molbev\/msx148","journal-title":"Mol Biol Evol"},{"key":"1746_CR35","doi-asserted-by":"publisher","first-page":"D309","DOI":"10.1093\/nar\/gky1085","volume":"47","author":"J Huerta-Cepas","year":"2019","unstructured":"Huerta-Cepas J, Szklarczyk D, Heller D et al (2019) EggNOG 5.0: A hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res 47:D309\u2013D314. https:\/\/doi.org\/10.1093\/nar\/gky1085","journal-title":"Nucleic Acids Res"},{"key":"1746_CR36","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13225-019-00430-9","volume":"97","author":"KD Hyde","year":"2019","unstructured":"Hyde KD, Xu J, Rapior S et al (2019) The amazing potential of fungi: 50 ways we can exploit fungi industrially. Fungal Divers 97:1\u2013136. https:\/\/doi.org\/10.1007\/s13225-019-00430-9","journal-title":"Fungal Divers"},{"key":"1746_CR37","unstructured":"Inkscape (2019) v. 0.92.2 Computer program and documentation distributed by the authors. https:\/\/inkscape.org"},{"key":"1746_CR38","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1186\/1471-2105-11-431","volume":"11","author":"LS Johnson","year":"2010","unstructured":"Johnson LS, Eddy SR, Portugaly E (2010) Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11:431. https:\/\/doi.org\/10.1186\/1471-2105-11-431","journal-title":"BMC Bioinformatics"},{"key":"1746_CR39","doi-asserted-by":"publisher","first-page":"1236","DOI":"10.1093\/bioinformatics\/btu031","volume":"30","author":"P Jones","year":"2014","unstructured":"Jones P, Binns D, Chang HY et al (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics 30:1236\u20131240. https:\/\/doi.org\/10.1093\/bioinformatics\/btu031","journal-title":"Bioinformatics"},{"key":"1746_CR40","doi-asserted-by":"publisher","first-page":"D457","DOI":"10.1093\/nar\/gkv1070","volume":"44","author":"M Kanehisa","year":"2016","unstructured":"Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M (2016) KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res 44:D457\u2013D462. https:\/\/doi.org\/10.1093\/nar\/gkv1070","journal-title":"Nucleic Acids Res"},{"key":"1746_CR41","doi-asserted-by":"publisher","first-page":"1160","DOI":"10.1093\/bib\/bbx108","volume":"20","author":"K Katoh","year":"2018","unstructured":"Katoh K, Rozewicki J, Yamada KD (2018) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform 20:1160\u20131166. https:\/\/doi.org\/10.1093\/bib\/bbx108","journal-title":"Brief Bioinform"},{"key":"1746_CR42","doi-asserted-by":"publisher","first-page":"656","DOI":"10.1101\/gr.229202","volume":"12","author":"WJ Kent","year":"2002","unstructured":"Kent WJ (2002) BLAT\u2013-the BLAST-like alignment tool. Genome Res 12:656\u2013664. https:\/\/doi.org\/10.1101\/gr.229202","journal-title":"Genome Res"},{"key":"1746_CR43","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.3317","volume":"12","author":"D Kim","year":"2015","unstructured":"Kim D, Langmead B, Salzberg SL (2015) HISAT: afast spliced aligner with low memory requirements. Nat Methods 12:357\u2013360. https:\/\/doi.org\/10.1038\/nmeth.3317","journal-title":"Nat Methods"},{"key":"1746_CR44","doi-asserted-by":"publisher","first-page":"D250","DOI":"10.1093\/nar\/gku1220","volume":"43","author":"EV Kriventseva","year":"2015","unstructured":"Kriventseva EV, Tegenfeldt F, Petty TJ et al (2015) OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. Nucleic Acids Res 43:D250\u2013D256. https:\/\/doi.org\/10.1093\/nar\/gku1220","journal-title":"Nucleic Acids Res"},{"key":"1746_CR45","unstructured":"Krueger F (2015) Trim Galore! v0.4.4. Computer program and documentation distributed by Babraham Institute. https:\/\/github.com\/FelixKrueger\/TrimGalore"},{"key":"1746_CR46","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1007\/s11557-018-1420-7","volume":"18","author":"A Kub\u00e1tov\u00e1","year":"2019","unstructured":"Kub\u00e1tov\u00e1 A, Hujslov\u00e1 M, Frisvad JC, Chud\u00ed\u010dkov\u00e1 M, Kola\u0159\u00edk M (2019) Taxonomic revision of the biotechnologically important species Penicillium oxalicum with the description of two new species from acidic and saline soils. Mycol Prog 18:215\u2013228. https:\/\/doi.org\/10.1007\/s11557-018-1420-7","journal-title":"Mycol Prog"},{"key":"1746_CR47","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1016\/S1087-1845(02)00526-1","volume":"38","author":"K Langfelder","year":"2003","unstructured":"Langfelder K, Streibel M, Jahn B, Haase G, Brakhage AA (2003) Biosynthesis of fungal melanins and their importance for human pathogenic fungi. Fungal Genet Biol 38:143\u2013158. https:\/\/doi.org\/10.1016\/S1087-1845(02)00526-1","journal-title":"Fungal Genet Biol"},{"key":"1746_CR48","doi-asserted-by":"publisher","first-page":"3276","DOI":"10.1093\/bioinformatics\/btu531","volume":"30","author":"A Larsson","year":"2014","unstructured":"Larsson A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30:3276\u20133278. https:\/\/doi.org\/10.1093\/bioinformatics\/btu531","journal-title":"Bioinformatics"},{"key":"1746_CR49","doi-asserted-by":"publisher","first-page":"124","DOI":"10.1186\/1471-2105-12-124","volume":"12","author":"M Lechner","year":"2011","unstructured":"Lechner M, Findei\u00df S, Steiner L et al (2011) Proteinortho: detection of (Co-)orthologs in large-scale analysis. BMC Bioinformatics 12:124. https:\/\/doi.org\/10.1186\/1471-2105-12-124","journal-title":"BMC Bioinformatics"},{"key":"1746_CR50","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.588263","volume":"11","author":"AR Lenz","year":"2020","unstructured":"Lenz AR, Gal\u00e1n-Vasquez E, Balbinot E et al (2020) Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114\u20132 inferred by a computational biology approach. Front Microbiol 11:588263. https:\/\/doi.org\/10.3389\/fmicb.2020.588263","journal-title":"Front Microbiol"},{"key":"1746_CR51","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2022.146345","volume":"822","author":"AR Lenz","year":"2022","unstructured":"Lenz AR, Balbinot E, Oliveira NS et al (2022) Analysis of carbohydrate-active enzymes and sugar transporters in Penicillium echinulatum: a genome-wide comparative study of the fungal lignocellulolytic system. Gene 822:146345. https:\/\/doi.org\/10.1016\/j.gene.2022.146345","journal-title":"Gene"},{"key":"1746_CR52","doi-asserted-by":"publisher","first-page":"e1005509","DOI":"10.1371\/journal.pgen.1005509","volume":"11","author":"Z Li","year":"2015","unstructured":"Li Z, Yao G, Wu R et al (2015) Synergistic and dose-controlled regulation of cellulase gene expression in Penicillium oxalicum. PLoS Genet 11:e1005509\u2013e1005509. https:\/\/doi.org\/10.1371\/journal.pgen.1005509","journal-title":"PLoS Genet"},{"key":"1746_CR53","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0055185","volume":"8","author":"G Liu","year":"2013","unstructured":"Liu G, Zhang L, Wei X et al (2013) Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens. PLoS ONE 8:e55185. https:\/\/doi.org\/10.1371\/journal.pone.0055185","journal-title":"PLoS ONE"},{"key":"1746_CR54","doi-asserted-by":"publisher","first-page":"W54","DOI":"10.1093\/nar\/gkw413","volume":"44","author":"TM Lowe","year":"2016","unstructured":"Lowe TM, Chan PP (2016) tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res 44:W54\u2013W57. https:\/\/doi.org\/10.1093\/nar\/gkw413","journal-title":"Nucleic Acids Res"},{"key":"1746_CR55","doi-asserted-by":"publisher","unstructured":"McDonnell E, Strasser K, Tsang A (2018) Manual gene curation and functional annotation. In: de Vries RP, Tsang A, Grigoriev IV (ed) Methods in molecular biology. New York, NY, pp 185\u2013208. https:\/\/doi.org\/10.1007\/978-1-4939-7804-5_16","DOI":"10.1007\/978-1-4939-7804-5_16"},{"key":"1746_CR56","doi-asserted-by":"publisher","unstructured":"Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: IEEE Gateway Computing Environments workshop (GCE), pp 1\u20138. https:\/\/doi.org\/10.1109\/GCE.2010.5676129","DOI":"10.1109\/GCE.2010.5676129"},{"key":"1746_CR57","doi-asserted-by":"publisher","first-page":"218","DOI":"10.1093\/bioinformatics\/18.1.218","volume":"18","author":"S Moller","year":"2002","unstructured":"Moller S, Croning MDR, Apweiler R (2002) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 18:218\u2013218. https:\/\/doi.org\/10.1093\/bioinformatics\/18.1.218","journal-title":"Bioinformatics"},{"key":"1746_CR58","doi-asserted-by":"publisher","first-page":"W182","DOI":"10.1093\/nar\/gkm321","volume":"35","author":"Y Moriya","year":"2007","unstructured":"Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M (2007) KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 35:W182\u2013W185. https:\/\/doi.org\/10.1093\/nar\/gkm321","journal-title":"Nucleic Acids Res"},{"key":"1746_CR59","doi-asserted-by":"publisher","first-page":"21361","DOI":"10.1039\/c4ra00909f","volume":"4","author":"M Novello","year":"2014","unstructured":"Novello M, Vilasboa J, Schneider WDH, dos Reis L, Fontana RC, Camassola M (2014) Enzymes for second generation ethanol: Exploring new strategies for the use of xylose. RSC Adv 4:21361\u201321368. https:\/\/doi.org\/10.1039\/c4ra00909f","journal-title":"RSC Adv"},{"key":"1746_CR60","doi-asserted-by":"publisher","first-page":"12233","DOI":"10.1038\/ncomms12233","volume":"7","author":"S Nygaard","year":"2016","unstructured":"Nygaard S, Hu H, Li C et al (2016) Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun 7:12233. https:\/\/doi.org\/10.1038\/ncomms12233","journal-title":"Nat Commun"},{"key":"1746_CR61","doi-asserted-by":"publisher","first-page":"10","DOI":"10.3109\/13693786.2013.826879","volume":"52","author":"AK Pal","year":"2014","unstructured":"Pal AK, Gajjar DU, Vasavada AR (2014) DOPA and DHN pathway orchestrate melanin synthesis in Aspergillus species. Med Mycol 52:10\u201318. https:\/\/doi.org\/10.3109\/13693786.2013.826879","journal-title":"Med Mycol"},{"key":"1746_CR62","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.funeco.2018.03.004","volume":"34","author":"MS Park","year":"2018","unstructured":"Park MS, Oh SY, Lee S, Eimes JA, Lim YW (2018) Fungal diversity and enzyme activity associated with sailfin sandfish egg masses in Korea. Fungal Ecol 34:1\u20139. https:\/\/doi.org\/10.1016\/j.funeco.2018.03.004","journal-title":"Fungal Ecol"},{"key":"1746_CR63","doi-asserted-by":"publisher","first-page":"364","DOI":"10.1242\/jeb.17.4.364","volume":"17","author":"EA Parkin","year":"1940","unstructured":"Parkin EA (1940) The digestive enzymes of some wood-boring beetle larvae. Exp Biol 17:364\u2013377. https:\/\/doi.org\/10.1242\/jeb.17.4.364","journal-title":"Exp Biol"},{"key":"1746_CR64","doi-asserted-by":"publisher","unstructured":"Patel PK, Free SJ (2019) The genetics and biochemistry of cell wall structure and synthesis in Neurospora crassa, a model filamentous fungus. Front Microbiol 10. https:\/\/doi.org\/10.3389\/fmicb.2019.02294","DOI":"10.3389\/fmicb.2019.02294"},{"key":"1746_CR65","doi-asserted-by":"publisher","first-page":"01045","DOI":"10.3389\/fmicb.2018.01045","volume":"9","author":"M Peng","year":"2018","unstructured":"Peng M, Aguilar-Pontes MV, de Vries RP, M\u00e4kel\u00e4 MR (2018) In silico analysis of putative sugar transporter genes in Aspergillus niger using phylogeny and comparative transcriptomics. Front Microbiol 9:01045. https:\/\/doi.org\/10.3389\/fmicb.2018.01045","journal-title":"Front Microbiol"},{"key":"1746_CR66","doi-asserted-by":"publisher","first-page":"3943","DOI":"10.3390\/ijms20163943","volume":"20","author":"IE Pralea","year":"2019","unstructured":"Pralea IE, Moldovan RC, Petrache AM et al (2019) From extraction to advanced analytical methods: the challenges of melanin analysis. Int J Mol Sci 20:3943. https:\/\/doi.org\/10.3390\/ijms20163943","journal-title":"Int J Mol Sci"},{"key":"1746_CR67","unstructured":"Rambaut A (2009) FigTree v.1.4.4. Computer program and documentation distributed by the author. http:\/\/tree.bio.ed.ac.uk\/software\/"},{"key":"1746_CR68","doi-asserted-by":"publisher","first-page":"e50571","DOI":"10.1371\/journal.pone.0050571","volume":"7","author":"DA Ribeiro","year":"2012","unstructured":"Ribeiro DA, Cota J, Alvarez TM et al (2012) The Penicillium echinulatum Secretome on Sugar Cane Bagasse. PLoS ONE 7:e50571\u2013e50571. https:\/\/doi.org\/10.1371\/journal.pone.0050571","journal-title":"PLoS ONE"},{"key":"1746_CR69","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1093\/sysbio\/sys029","volume":"61","author":"F Ronquist","year":"2012","unstructured":"Ronquist F, Teslenko M, van der Mark P et al (2012) MrBayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539\u2013542. https:\/\/doi.org\/10.1093\/sysbio\/sys029","journal-title":"Syst Biol"},{"key":"1746_CR70","doi-asserted-by":"publisher","first-page":"1187","DOI":"10.1111\/j.1365-2672.2009.04528.x","volume":"108","author":"MR Rubini","year":"2010","unstructured":"Rubini MR, Dillon AJP, Kyaw CM, Faria FP, Po\u00e7as-Fonseca MJ, Silva-Pereira I (2010) Cloning, characterization and heterologous expression of the first Penicillium echinulatum cellulase gene. Appl Microbiol 108:1187\u20131198. https:\/\/doi.org\/10.1111\/j.1365-2672.2009.04528.x","journal-title":"Appl Microbiol"},{"key":"1746_CR71","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1155\/2014\/254863","volume":"2014","author":"WDH Schneider","year":"2014","unstructured":"Schneider WDH, dos Reis L, Camassola M, Dillon AJP (2014) Morphogenesis and production of enzymes by Penicillium echinulatum in response to different carbon sources. Biomed Res Int 2014:10. https:\/\/doi.org\/10.1155\/2014\/254863","journal-title":"Biomed Res Int"},{"key":"1746_CR72","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/s13068-016-0476-3","volume":"9","author":"WDH Schneider","year":"2016","unstructured":"Schneider WDH, Gon\u00e7alves TA, Uchima CA et al (2016) Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass. Biotechnol Biofuels 9:66. https:\/\/doi.org\/10.1186\/s13068-016-0476-3","journal-title":"Biotechnol Biofuels"},{"key":"1746_CR73","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.procbio.2017.11.004","volume":"66","author":"WDH Schneider","year":"2018","unstructured":"Schneider WDH, Gon\u00e7alves TA, Uchima CA et al (2018) Comparison of the production of enzymes to cell wall hydrolysis using different carbon sources by Penicillium echinulatum strains and its hydrolysis potential for lignocelullosic biomass. Process Biochem 66:162\u2013170. https:\/\/doi.org\/10.1016\/j.procbio.2017.11.004","journal-title":"Process Biochem"},{"key":"1746_CR74","doi-asserted-by":"publisher","DOI":"10.1016\/j.apenergy.2020.114493","volume":"262","author":"WDH Schneider","year":"2020","unstructured":"Schneider WDH, Fontana RC, Baudel HM et al (2020) Lignin degradation and detoxification of eucalyptus wastes by on-site manufacturing fungal enzymes to enhance second-generation ethanol yield. Appl Energ 262:114493. https:\/\/doi.org\/10.1016\/j.apenergy.2020.114493","journal-title":"Appl Energ"},{"key":"1746_CR75","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1186\/s13068-015-0420-y","volume":"8","author":"Y Shida","year":"2015","unstructured":"Shida Y, Yamaguchi K, Nitta M et al (2015) The impact of a single-nucleotide mutation of bgl2 on cellulase induction in a Trichoderma reesei mutant. Biotechnol Biofuels 8:230. https:\/\/doi.org\/10.1186\/s13068-015-0420-y","journal-title":"Biotechnol Biofuels"},{"key":"1746_CR76","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1186\/1471-2105-6-31","volume":"6","author":"GSC Slater","year":"2005","unstructured":"Slater GSC, Birney E (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31. https:\/\/doi.org\/10.1186\/1471-2105-6-31","journal-title":"BMC Bioinformatics"},{"key":"1746_CR77","unstructured":"Smit A, Hubley R, Green P (2013) RepeatMasker Open-4.0. Computer program and documentation distributed by the authors. http:\/\/www.repeatmasker.org"},{"key":"1746_CR78","doi-asserted-by":"publisher","unstructured":"Solovyev V (2008) Statistical Approaches in Eukaryotic Gene Prediction. In: Balding DJ, Bishop M and Cannings C (ed). Handbook of Statistical Genetics. Third edition. Wiley Online Library, Chapter 4, pp 97\u2013159. https:\/\/doi.org\/10.1002\/9780470061619.ch4","DOI":"10.1002\/9780470061619.ch4"},{"key":"1746_CR79","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","volume":"30","author":"A Stamatakis","year":"2014","unstructured":"Stamatakis A (2014) RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312\u20131313. https:\/\/doi.org\/10.1093\/bioinformatics\/btu033","journal-title":"Bioinformatics"},{"key":"1746_CR80","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1186\/1471-2105-7-62","volume":"7","author":"M Stanke","year":"2006","unstructured":"Stanke M, Sch\u00f6ffmann O, Morgenstern B, Waack S (2006) Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7:62. https:\/\/doi.org\/10.1186\/1471-2105-7-62","journal-title":"BMC Bioinformatics"},{"key":"1746_CR82","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.simyco.2017.01.001","volume":"86","author":"MM Teixeira","year":"2017","unstructured":"Teixeira MM, Moreno LF, Stielow BJ et al (2017) Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota). Stud Mycol 86:1\u201328. https:\/\/doi.org\/10.1016\/j.simyco.2017.01.001","journal-title":"Stud Mycol"},{"key":"1746_CR83","doi-asserted-by":"publisher","first-page":"1979","DOI":"10.1101\/gr.081612.108","volume":"18","author":"V Ter-Hovhannisyan","year":"2008","unstructured":"Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M (2008) Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res 18:1979\u20131990. https:\/\/doi.org\/10.1101\/gr.081612.108","journal-title":"Genome Res"},{"key":"1746_CR84","doi-asserted-by":"publisher","first-page":"D506","DOI":"10.1093\/nar\/gky1049","volume":"47","author":"The UniProt Consortium","year":"2019","unstructured":"The UniProt Consortium (2019) UniProt: a worldwide hub of protein knowledge. Nucleic Acids Res 47:D506\u2013D515. https:\/\/doi.org\/10.1093\/nar\/gky1049","journal-title":"Nucleic Acids Res"},{"key":"1746_CR85","unstructured":"The GIMP (2020) GIMP v2.10.14. Computer program and documentation distributed by Development Team. https:\/\/www.gimp.org"},{"key":"1746_CR86","doi-asserted-by":"publisher","first-page":"6469","DOI":"10.1128\/jb.181.20.6469-6477.1999","volume":"181","author":"HF Tsai","year":"1999","unstructured":"Tsai HF, Wheeler MH, Chang YC, Kwon-Chung KJ (1999) A developmentally regulated gene cluster involved in conidial pigment biosynthesis in Aspergillus fumigatus. J Bacteriol 181:6469\u20136477. https:\/\/doi.org\/10.1128\/jb.181.20.6469-6477.1999","journal-title":"J Bacteriol"},{"key":"1746_CR87","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0116269","volume":"10","author":"JM Van Munster","year":"2015","unstructured":"Van Munster JM, Nitsche BM, Akeroyd M et al (2015) Systems approaches to predict the functions of glycoside hydrolases during the life cycle of Aspergillus niger using developmental mutants \u0394brlA and \u0394flbA. PLoS ONE 10:e0116269. https:\/\/doi.org\/10.1371\/journal.pone.0116269","journal-title":"PLoS ONE"},{"key":"1746_CR88","doi-asserted-by":"publisher","first-page":"965","DOI":"10.1111\/j.1471-8286.2007.01821.x","volume":"7","author":"P Villesen","year":"2007","unstructured":"Villesen P (2007) FaBox: an online toolbox for FASTA sequences. Mol Ecol Notes 7:965\u2013968. https:\/\/doi.org\/10.1111\/j.1471-8286.2007.01821.x","journal-title":"Mol Ecol Notes"},{"key":"1746_CR89","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1016\/j.simyco.2014.09.001","volume":"78","author":"CM Visagie","year":"2014","unstructured":"Visagie CM, Houbraken J, Frisvad JC et al (2014) Identification and nomenclature of the genus Penicillium. Stud Mycol 78:343\u2013371. https:\/\/doi.org\/10.1016\/j.simyco.2014.09.001","journal-title":"Stud Mycol"},{"key":"1746_CR91","doi-asserted-by":"publisher","first-page":"543","DOI":"10.1093\/molbev\/msx319","volume":"35","author":"RM Waterhouse","year":"2018","unstructured":"Waterhouse RM, Seppey M, Simao FA et al (2018) BUSCO applications from quality assessments to gene prediction and phylogenomics. Mol Biol Evol 35:543\u2013548. https:\/\/doi.org\/10.1093\/molbev\/msx319","journal-title":"Mol Biol Evol"},{"key":"1746_CR92","doi-asserted-by":"publisher","first-page":"1431","DOI":"10.1016\/j.cell.2014.08.009","volume":"158","author":"MT Weirauch","year":"2014","unstructured":"Weirauch MT, Yang A, Albu M et al (2014) Determination and inference of eukaryotic transcription factor sequence specificity. Cell 158:1431\u20131443. https:\/\/doi.org\/10.1016\/j.cell.2014.08.009","journal-title":"Cell"},{"key":"1746_CR93","doi-asserted-by":"publisher","first-page":"3750","DOI":"10.1111\/j.1742-4658.2010.07776.x","volume":"277","author":"PCY Woo","year":"2010","unstructured":"Woo PCY, Tam EWT, Chong KTK et al (2010) High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei. FEBS J 277:3750\u20133758. https:\/\/doi.org\/10.1111\/j.1742-4658.2010.07776.x","journal-title":"FEBS J"},{"key":"1746_CR94","doi-asserted-by":"publisher","unstructured":"Wu TD, Reeder J, Lawrence M, Becker G, Brauer MJ (2016) GMAP and GSNAP for genomic sequence alignment: enhancements to speed, accuracy, and functionality. In: Math\u00e9 E, Davis S (ed) Methods in molecular biology. New York, NY, pp 283\u2013334. https:\/\/doi.org\/10.1007\/978-1-4939-3578-9_15","DOI":"10.1007\/978-1-4939-3578-9_15"},{"key":"1746_CR95","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1186\/s13068-016-0491-4","volume":"9","author":"G Yao","year":"2016","unstructured":"Yao G, Wu R, Kan Q et al (2016) Production of a high-efficiency cellulase complex via \u03b2-glucosidase engineering in Penicillium oxalicum. Biotechnol Biofuels 9:78. https:\/\/doi.org\/10.1186\/s13068-016-0491-4","journal-title":"Biotechnol Biofuels"},{"key":"1746_CR96","doi-asserted-by":"publisher","first-page":"W95","DOI":"10.1093\/nar\/gky418","volume":"46","author":"H Zhang","year":"2018","unstructured":"Zhang H, Yohe T, Huang L et al (2018) DbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res 46:W95-101. https:\/\/doi.org\/10.1093\/nar\/gky418","journal-title":"Nucleic Acids Res"}],"container-title":["Antonie van Leeuwenhoek"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-022-01746-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10482-022-01746-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-022-01746-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,19]],"date-time":"2022-07-19T18:19:12Z","timestamp":1658254752000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10482-022-01746-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,6,9]]},"references-count":94,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2022,8]]}},"alternative-id":["1746"],"URL":"https:\/\/doi.org\/10.1007\/s10482-022-01746-4","relation":{},"ISSN":["0003-6072","1572-9699"],"issn-type":[{"type":"print","value":"0003-6072"},{"type":"electronic","value":"1572-9699"}],"subject":[],"published":{"date-parts":[[2022,6,9]]},"assertion":[{"value":"2 December 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 May 2022","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 June 2022","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All authors declare no conflict of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}},{"value":"Not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}},{"value":"Not applicable.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to publish"}}]}}