{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T06:07:02Z","timestamp":1791266822322,"version":"4.1.0"},"reference-count":95,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T00:00:00Z","timestamp":1763683200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T00:00:00Z","timestamp":1763683200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","award":["80635839"],"award-info":[{"award-number":["80635839"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Antonie van Leeuwenhoek"],"published-print":{"date-parts":[[2026,1]]},"DOI":"10.1007\/s10482-025-02212-7","type":"journal-article","created":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T08:23:42Z","timestamp":1763713422000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Seasonal variation in bacterial community composition in the brackish meromictic Lake Suigetsu"],"prefix":"10.1007","volume":"119","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9261-3490","authenticated-orcid":false,"given":"Takafumi","family":"Kataoka","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuki","family":"Sato-Takabe.","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yunosuke","family":"Nakamura","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Takuhei","family":"Shiozaki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuya","family":"Tsukamoto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Satoshi","family":"Hanada","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,11,21]]},"reference":[{"key":"2212_CR1","doi-asserted-by":"publisher","first-page":"107369","DOI":"10.1016\/j.ecss.2021.107369","volume":"255","author":"SL Aalto","year":"2021","unstructured":"Aalto SL, Asmala E, Jilbert T, Hietanen S (2021) Autochthonous organic matter promotes DNRA and suppresses N2O production in sediments of the coastal Baltic Sea. Estuar Coast Shelf Sci 255:107369. https:\/\/doi.org\/10.1016\/j.ecss.2021.107369","journal-title":"Estuar Coast Shelf Sci"},{"key":"2212_CR2","doi-asserted-by":"publisher","first-page":"e0178755","DOI":"10.1371\/journal.pone.0178755","volume":"12","author":"M Aguirre","year":"2017","unstructured":"Aguirre M, Abad D, Albaina A, Cralle L, Soledad M, Go\u00f1i-Urriza EA, Zarraonaindia I (2017) Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries. PLoS ONE 12:e0178755. https:\/\/doi.org\/10.1371\/journal.pone.0178755","journal-title":"PLoS ONE"},{"key":"2212_CR100","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1073\/pnas.1715789115","volume":"115","author":"F Beulig","year":"2018","unstructured":"Beulig F, R\u00f8y H, Glombitza C, J\u00f8rgensen BB (2018) Control on rate and pathway of anaerobic organic carbon degradation in the seabed. P Natl Acad Sci USA 115:367\u2013372. https:\/\/doi.org\/10.1073\/pnas.1715789115","journal-title":"P Natl Acad Sci USA"},{"key":"2212_CR3","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1016\/j.limno.2013.08.003","volume":"44","author":"B Boehrer","year":"2014","unstructured":"Boehrer B, Kiwel U, Rahn K, Schultze M (2014) Chemocline erosion and its conservation by freshwater introduction to meromictic salt lakes. Limnologica 44:81\u201389. https:\/\/doi.org\/10.1016\/j.limno.2013.08.003","journal-title":"Limnologica"},{"key":"2212_CR4","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1007\/978-3-319-49143-1_2","volume-title":"Ecology of Meromictic Lakes","author":"B Boehrer","year":"2017","unstructured":"Boehrer B, von Rohden C, Schultze M (2017) Physical features of meromictic lakes: stratification and circulation. In: Gulati RD, Zadereev ES, Degermendzhi AG (eds) Ecology of Meromictic Lakes. Springer International Publishing, Cham, pp 15\u201334"},{"key":"2212_CR5","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1007\/978-3-642-38922-1_237","volume-title":"The Prokaryotes: Gammaproteobacteria","author":"JP Bowman","year":"2014","unstructured":"Bowman JP (2014) The Family Methylococcaceae. In: Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F (eds) The Prokaryotes: Gammaproteobacteria. Springer, Berlin Heidelberg, Berlin, Heidelberg, pp 411\u2013440"},{"key":"2212_CR6","doi-asserted-by":"publisher","first-page":"2579","DOI":"10.3389\/fmicb.2019.02579","volume":"10","author":"E Broman","year":"2019","unstructured":"Broman E, Asmala E, Carstensen J, Pinhassi J, Dopson M (2019) Distinct coastal microbiome populations associated with autochthonous- and allochthonous-like dissolved organic matter. Front Microbiol 10:2579. https:\/\/doi.org\/10.3389\/fmicb.2019.02579","journal-title":"Front Microbiol"},{"key":"2212_CR7","doi-asserted-by":"publisher","first-page":"5665","DOI":"10.1128\/Aem.71.10.5665-5677.2005","volume":"71","author":"A Buchan","year":"2005","unstructured":"Buchan A, Gonz\u00e1lez JM, Moran MA (2005) Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71:5665\u20135677. https:\/\/doi.org\/10.1128\/Aem.71.10.5665-5677.2005","journal-title":"Appl Environ Microbiol"},{"key":"2212_CR8","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1038\/Nmeth.3869","volume":"13","author":"BJ Callahan","year":"2016","unstructured":"Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. https:\/\/doi.org\/10.1038\/Nmeth.3869","journal-title":"Nat Methods"},{"key":"2212_CR9","doi-asserted-by":"publisher","first-page":"4516","DOI":"10.1073\/pnas.1000080107","volume":"108","author":"JG Caporaso","year":"2011","unstructured":"Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. P Natl Acad Sci USA 108:4516\u20134522. https:\/\/doi.org\/10.1073\/pnas.1000080107","journal-title":"P Natl Acad Sci USA"},{"key":"2212_CR10","doi-asserted-by":"publisher","first-page":"2034","DOI":"10.1038\/s41396-020-0666-7","volume":"14","author":"HK Carlson","year":"2020","unstructured":"Carlson HK, Lui LM, Price MN, Kazakov AE, Carr AV, Kuehl JV, Owens TK, Nielsen T, Arkin AP, Deutschbauer AM (2020) Selective carbon sources influence the end products of microbial nitrate respiration. ISME J 14:2034\u20132045. https:\/\/doi.org\/10.1038\/s41396-020-0666-7","journal-title":"ISME J"},{"key":"2212_CR11","doi-asserted-by":"publisher","first-page":"4705","DOI":"10.1128\/Aem.00314-11","volume":"77","author":"L Chistoserdova","year":"2011","unstructured":"Chistoserdova L (2011) Methylotrophy in a lake: from metagenomics to single-organism physiology. Appl Environ Microbiol 77:4705\u20134711. https:\/\/doi.org\/10.1128\/Aem.00314-11","journal-title":"Appl Environ Microbiol"},{"key":"2212_CR12","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1007\/978-3-319-49143-1_6","volume-title":"Ecology of Meromictic Lakes","author":"I Ciglene\u010dki","year":"2017","unstructured":"Ciglene\u010dki I, Ljube\u0161i\u0107 Z, Janekovi\u0107 I, Batisti\u0107 M (2017) Rogoznica Lake, a euxinic marine lake on the Adriatic coast (Croatia) that fluctuates between anoxic holomictic and meromictic conditions. In: Gulati RD, Zadereev ES, Degermendzhi AG (eds) Ecology of Meromictic Lakes. Springer International Publishing, Springer Cham, pp 125\u2013154"},{"key":"2212_CR13","doi-asserted-by":"publisher","first-page":"604","DOI":"10.1038\/srep00604","volume":"2","author":"AM Comeau","year":"2012","unstructured":"Comeau AM, Harding T, Galand PE, Vincent WF, Lovejoy C (2012) Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters. Sci Rep 2:604. https:\/\/doi.org\/10.1038\/srep00604","journal-title":"Sci Rep"},{"key":"2212_CR14","doi-asserted-by":"publisher","first-page":"6802","DOI":"10.1128\/AEM.00648-07","volume":"73","author":"BC Crump","year":"2007","unstructured":"Crump BC, Peranteau C, Beckingham B, Cornwell JC (2007) Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Appl Environ Microbiol 73:6802\u20136810. https:\/\/doi.org\/10.1128\/AEM.00648-07","journal-title":"Appl Environ Microbiol"},{"key":"2212_CR15","doi-asserted-by":"publisher","first-page":"e0209743","DOI":"10.1371\/journal.pone.0209743","volume":"13","author":"F Danza","year":"2018","unstructured":"Danza F, Ravasi D, Storelli N, Roman S, Ludin S, Bueche M, Tonolla M (2018) Bacterial diversity in the water column of meromictic Lake Cadagno and evidence for seasonal dynamics. PLoS ONE 13:e0209743. https:\/\/doi.org\/10.1371\/journal.pone.0209743","journal-title":"PLoS ONE"},{"key":"2212_CR16","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/ismej.2012.169","volume":"7","author":"B Fern\u00e1ndez-G\u00f3mez","year":"2013","unstructured":"Fern\u00e1ndez-G\u00f3mez B, Richter M, Sch\u00fcler M, Pinhassi J, Acinas SG, Gonz\u00e1lez JM, Pedros-Alio C (2013) Ecology of marine Bacteroidetes: a comparative genomics approach. ISME J 7:1026\u20131037. https:\/\/doi.org\/10.1038\/ismej.2012.169","journal-title":"ISME J"},{"key":"2212_CR17","doi-asserted-by":"publisher","first-page":"000064","DOI":"10.12952\/journal.elementa.000064","volume":"3","author":"JC Fisher","year":"2015","unstructured":"Fisher JC, Newton RJ, Dila DK, McLellan SL (2015) Urban microbial ecology of a freshwater estuary of Lake Michigan. Elementa-Sci Anthropocene 3:000064. https:\/\/doi.org\/10.12952\/journal.elementa.000064","journal-title":"Elementa-Sci Anthropocene"},{"key":"2212_CR18","volume-title":"An R Companion to Applied Regression","author":"J Fox","year":"2019","unstructured":"Fox J, Weisberg S (2019) An R Companion to Applied Regression, 3rd edn. Sage, Thousand Oaks","edition":"3"},{"key":"2212_CR19","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1038\/nrmicro3417","volume":"13","author":"JA Fuhrman","year":"2015","unstructured":"Fuhrman JA, Cram JA, Needham DM (2015) Marine microbial community dynamics and their ecological interpretation. Nat Rev Microbiol 13:133\u2013146. https:\/\/doi.org\/10.1038\/nrmicro3417","journal-title":"Nat Rev Microbiol"},{"key":"2212_CR20","doi-asserted-by":"publisher","DOI":"10.1264\/jsme2.ME22012","author":"N Fujii","year":"2022","unstructured":"Fujii N, Kuroda K, Narihiro T, Aoi Y, Ozaki N, Ohashi A, Kindaichi T (2022) Metabolic potential of the superphylum reconstructed from activated sludge samples from a municipal wastewater treatment plant. Microbes Environ. https:\/\/doi.org\/10.1264\/jsme2.ME22012","journal-title":"Microbes Environ"},{"key":"2212_CR21","doi-asserted-by":"publisher","first-page":"405","DOI":"10.1146\/annurev.ecolsys.29.1.405","volume":"29","author":"JP Gattuso","year":"1998","unstructured":"Gattuso JP, Frankignoulle M, Wollast R (1998) Carbon and carbonate metabolism in coastal aquatic ecosystems. Annu Rev Ecol Syst 29:405\u2013434. https:\/\/doi.org\/10.1146\/annurev.ecolsys.29.1.405","journal-title":"Annu Rev Ecol Syst"},{"key":"2212_CR22","doi-asserted-by":"publisher","first-page":"2503","DOI":"10.1038\/ismej.2014.135","volume":"8","author":"TW Ghylin","year":"2014","unstructured":"Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan LK, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F, Malmstrom R, Bertilsson S, McMahon KD (2014) Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. ISME J 8:2503\u20132516. https:\/\/doi.org\/10.1038\/ismej.2014.135","journal-title":"ISME J"},{"key":"2212_CR23","first-page":"47","volume-title":"Microbial Ecology of the Oceans","author":"S Giovannoni","year":"2000","unstructured":"Giovannoni S, Rapp\u00e9 MS (2000) Evolution, diversity, and molecular ecology of marine prokaryotes. In: Kirchman DL (ed) Microbial Ecology of the Oceans. John Wiley and Sons, New York, pp 47\u201384"},{"key":"2212_CR24","doi-asserted-by":"publisher","first-page":"1771","DOI":"10.1111\/j.1462-2920.2008.01598.x","volume":"10","author":"SJ Giovannoni","year":"2008","unstructured":"Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, Cho JC, Oh HM, Kitner JB, Vergin KL, Rapp\u00e9 MS (2008) The small genome of an abundant coastal ocean methylotroph. Environ Microbiol 10:1771\u20131782. https:\/\/doi.org\/10.1111\/j.1462-2920.2008.01598.x","journal-title":"Environ Microbiol"},{"key":"2212_CR25","doi-asserted-by":"publisher","first-page":"475","DOI":"10.1007\/s00203-002-0416-4","volume":"177","author":"J Glaeser","year":"2002","unstructured":"Glaeser J, Ba\u00f1eras L, R\u00fctters H, Overmann J (2002) Novel bacteriochlorophyll e structures and species-specific variability of pigment composition in green sulfur bacteria. Arch Microbiol 177:475\u2013485. https:\/\/doi.org\/10.1007\/s00203-002-0416-4","journal-title":"Arch Microbiol"},{"key":"2212_CR26","doi-asserted-by":"publisher","first-page":"5053","DOI":"10.1128\/AEM.66.11.5053-5065.2000","volume":"66","author":"FO Gl\u00f6ckner","year":"2000","unstructured":"Gl\u00f6ckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Environ Microbiol 66:5053\u20135065. https:\/\/doi.org\/10.1128\/AEM.66.11.5053-5065.2000","journal-title":"Appl Environ Microbiol"},{"key":"2212_CR27","series-title":"Proteobacteria: Alpha and Beta Subclasses","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1007\/0-387-30745-1_14","volume-title":"The Prokaryotes","author":"PN Green","year":"2006","unstructured":"Green PN (2006) Methylobacterium. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The Prokaryotes, vol 5. Proteobacteria: Alpha and Beta Subclasses. Third eddition edn. Springer, New York, New York, NY, pp 257\u2013265"},{"key":"2212_CR28","doi-asserted-by":"publisher","first-page":"37","DOI":"10.60910\/wwat-r0qr","volume":"9","author":"A Hakala","year":"2004","unstructured":"Hakala A (2004) Meromixis as a part of lake evolution - observations and a revised classification of true meromictic lakes in Finland. Boreal Environ Res 9:37\u201353. https:\/\/doi.org\/10.60910\/wwat-r0qr","journal-title":"Boreal Environ Res"},{"key":"2212_CR29","doi-asserted-by":"publisher","first-page":"877","DOI":"10.1038\/s41396-019-0569-7","volume":"14","author":"MW Henson","year":"2020","unstructured":"Henson MW, Lanclos VC, Faircloth BC, Thrash JC (2020) Cultivation and genomics of the first freshwater SAR11 (LD12) isolate (vol 12, pg 1846, 2019). ISME J 14:877\u2013877. https:\/\/doi.org\/10.1038\/s41396-019-0569-7","journal-title":"ISME J"},{"key":"2212_CR30","doi-asserted-by":"publisher","first-page":"1571","DOI":"10.1038\/ismej.2011.41","volume":"5","author":"DPR Herlemann","year":"2011","unstructured":"Herlemann DPR, Labrenz M, J\u00fcrgens K, Bertilsson S, Waniek JJ, Andersson AF (2011) Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. ISME J 5:1571\u20131579. https:\/\/doi.org\/10.1038\/ismej.2011.41","journal-title":"ISME J"},{"key":"2212_CR31","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1007\/978-3-642-85132-2_4","volume-title":"Physics and Chemistry of Lakes","author":"DM Imboden","year":"1995","unstructured":"Imboden DM, W\u00fcest A (1995) Mixing mechanisms in lakes. In: Lerman A, Imboden DM, Gat JR (eds) Physics and Chemistry of Lakes. Springer, Berlin Heidelberg, Berlin, Heidelberg, pp 83\u2013138"},{"key":"2212_CR32","doi-asserted-by":"publisher","first-page":"3182","DOI":"10.1038\/s41467-023-38599-y","volume":"14","author":"JE Jardine","year":"2023","unstructured":"Jardine JE, Palmer M, Mahaffey C, Holt J, Wakelin SL, D\u00fcsterhus A, Sharples J, Wihsgott J (2023) Rain triggers seasonal stratification in a temperate shelf sea. Nat Commun 14:3182. https:\/\/doi.org\/10.1038\/s41467-023-38599-y","journal-title":"Nat Commun"},{"key":"2212_CR33","doi-asserted-by":"publisher","first-page":"2038","DOI":"10.3389\/fmicb.2018.02038","volume":"9","author":"LM Jochum","year":"2018","unstructured":"Jochum LM, Schreiber L, Marshall IPG, Jorgensen BB, Schramm A, Kjeldsen KU (2018) Single-cell genomics reveals a diverse metabolic potential of uncultivated Desulfatiglans-related Deltaproteobacteria widely distributed in marine sediment. Front Microbiol 9:2038. https:\/\/doi.org\/10.3389\/fmicb.2018.02038","journal-title":"Front Microbiol"},{"key":"2212_CR34","doi-asserted-by":"publisher","first-page":"2779","DOI":"10.1016\/j.dsr2.2009.06.013","volume":"56","author":"T Kataoka","year":"2009","unstructured":"Kataoka T, Suzuki K, Hayakawa M, Kudo I, Higashi S, Tsuda A (2009) Temporal changes in community composition of heterotrophic bacteria during in situ iron enrichment in the western subarctic Pacific (SEEDS-II). Deep-Sea Res Part II Topical Studies Oceanography 56:2779\u20132787. https:\/\/doi.org\/10.1016\/j.dsr2.2009.06.013","journal-title":"Deep-Sea Res Part II Topical Studies Oceanography"},{"key":"2212_CR35","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiw229","author":"T Kataoka","year":"2017","unstructured":"Kataoka T, Yamaguchi H, Sato M, Watanabe T, Taniuchi Y, Kuwata A, Kawachi M (2017) Seasonal and geographical distribution of near-surface small photosynthetic eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA. FEMS Microbiol Ecol. https:\/\/doi.org\/10.1093\/femsec\/fiw229","journal-title":"FEMS Microbiol Ecol"},{"key":"2212_CR36","doi-asserted-by":"publisher","first-page":"104898","DOI":"10.1016\/j.csr.2022.104898","volume":"253","author":"T Kataoka","year":"2023","unstructured":"Kataoka T, Sugimoto R, Kaneda A, Yamaguchi H, Rihei T, Yamashita S (2023) Seasonal variation in the community distribution of protists off Wakasa Bay, Southern Sea of Japan. Cont Shelf Res 253:104898. https:\/\/doi.org\/10.1016\/j.csr.2022.104898","journal-title":"Cont Shelf Res"},{"key":"2212_CR37","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1007\/s10201-025-00781-0","volume":"26","author":"T Kataoka","year":"2025","unstructured":"Kataoka T, Nakamura T, Miki I, Somiya R (2025) Spatiotemporal distributions of inorganic nutrients in a hypoxia forming saline lake, Lake Hiruga in Japan. Limnology 26:311\u2013322. https:\/\/doi.org\/10.1007\/s10201-025-00781-0","journal-title":"Limnology"},{"key":"2212_CR38","doi-asserted-by":"crossref","unstructured":"Kirchman DL (2018) Chapter 2. Elements, biochemicals, and structures of microbes, Second edition edn. Oxford University Press, Oxford, United Kingdom","DOI":"10.1093\/oso\/9780198789406.003.0002"},{"key":"2212_CR39","doi-asserted-by":"publisher","first-page":"4930","DOI":"10.1128\/Aem.70.8.4930-4940.2004","volume":"70","author":"Y Koizumi","year":"2004","unstructured":"Koizumi Y, Kojima H, Fukui M (2004) Dominant microbial composition and its vertical distribution in saline meromictic lake kaiike (Japan) as revealed by quantitative oligonucleotide probe membrane hybridization. Appl Environ Microbiol 70:4930\u20134940. https:\/\/doi.org\/10.1128\/Aem.70.8.4930-4940.2004","journal-title":"Appl Environ Microbiol"},{"key":"2212_CR40","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1007\/s10201-007-0201-9","volume":"8","author":"R Kondo","year":"2007","unstructured":"Kondo R, Butani J (2007) Comparison of the diversity of sulfate-reducing bacterial communities in the water column and the surface sediments of a Japanese meromictic lake. Limnology 8:131\u2013141. https:\/\/doi.org\/10.1007\/s10201-007-0201-9","journal-title":"Limnology"},{"key":"2212_CR41","doi-asserted-by":"publisher","first-page":"165","DOI":"10.3800\/pbr.1.165","volume":"1","author":"R Kondo","year":"2006","unstructured":"Kondo R, Osawa K, Mochizuki L, Fujioka Y, Butani J (2006) Abundance and diversity of sulphate-reducing bacterioplankton in Lake Suigetsu, a meromictic lake in Fukui, Japan. Plankon Benthos Res 1:165\u2013177. https:\/\/doi.org\/10.3800\/pbr.1.165","journal-title":"Plankon Benthos Res"},{"key":"2212_CR42","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1007\/s10201-009-0261-0","volume":"10","author":"R Kondo","year":"2009","unstructured":"Kondo R, Nakagawa A, Mochizuki L, Osawa K, Fujioka Y, Butani J (2009) Dominant bacterioplankton populations in the meromictic Lake Suigetsu as determined by denaturing gradient gel electrophoresis of 16S rRNA gene fragments. Limnology 10:63\u201369. https:\/\/doi.org\/10.1007\/s10201-009-0261-0","journal-title":"Limnology"},{"key":"2212_CR43","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1007\/s10201-013-0415-y","volume":"15","author":"R Kondo","year":"2014","unstructured":"Kondo R, Kodera M, Mori Y, Okamura T, Yoshikawa S, Ohki K (2014) Spatiotemporal distribution of bacteriochlorophylls in the meromictic Lake Suigetsu, Japan. Limnology 15:77\u201383. https:\/\/doi.org\/10.1007\/s10201-013-0415-y","journal-title":"Limnology"},{"key":"2212_CR44","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1016\/j.syapm.2014.05.008","volume":"37","author":"K Kubo","year":"2014","unstructured":"Kubo K, Kojima H, Fukui M (2014) Vertical distribution of major sulfate-reducing bacteria in a shallow eutrophic meromictic lake. Syst Appl Microbiol 37:510\u2013519. https:\/\/doi.org\/10.1016\/j.syapm.2014.05.008","journal-title":"Syst Appl Microbiol"},{"key":"2212_CR45","doi-asserted-by":"publisher","first-page":"215","DOI":"10.3390\/microorganisms10020215","volume":"10","author":"P Laas","year":"2022","unstructured":"Laas P, Ugarelli K, Travieso R, Stumpf S, Gaiser EE, Kominoski JS, Stingl U (2022) Water column microbial communities vary along salinity gradients in the florida coastal everglades wetlands. Microorganisms 10:215. https:\/\/doi.org\/10.3390\/microorganisms10020215","journal-title":"Microorganisms"},{"key":"2212_CR46","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/bs.aambs.2019.11.001","volume":"110","author":"J Larsbrink","year":"2020","unstructured":"Larsbrink J, McKee LS (2020) Bacteroidetes bacteria in the soil: Glycan acquisition, enzyme secretion, and gliding motility. Adv Appl Microbiol 110:63\u201398. https:\/\/doi.org\/10.1016\/bs.aambs.2019.11.001","journal-title":"Adv Appl Microbiol"},{"key":"2212_CR47","doi-asserted-by":"publisher","first-page":"2484","DOI":"10.1111\/1462-2920.15931","volume":"24","author":"H Leng","year":"2022","unstructured":"Leng H, Zhao WS, Xiao X (2022) Cultivation and metabolic insights of an uncultured clade, Bacteroidetes VC2.1 Bac22 (Candidatus Sulfidibacteriales ord. nov.), from deep-sea hydrothermal vents. Environ Microbiol 24:2484\u20132501. https:\/\/doi.org\/10.1111\/1462-2920.15931","journal-title":"Environ Microbiol"},{"key":"2212_CR48","doi-asserted-by":"publisher","first-page":"3485","DOI":"10.1099\/ijsem.0.002150","volume":"67","author":"N Li","year":"2017","unstructured":"Li N, Chen T, Cheng D, Xu X-J, He J (2017) Chitinophaga sedimenti sp. nov., isolated from sediment. Int J Syst Evol Microbiol 67:3485\u20133489. https:\/\/doi.org\/10.1099\/ijsem.0.002150","journal-title":"Int J Syst Evol Microbiol"},{"key":"2212_CR49","doi-asserted-by":"publisher","first-page":"2459","DOI":"10.1111\/1462-2920.12720","volume":"17","author":"MV Lindh","year":"2015","unstructured":"Lindh MV, Sj\u00f6stedt J, Andersson AF, Baltar F, Hugerth LW, Lundin D, Muthusamy S, Legrand C, Pinhassi J (2015) Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling. Environ Microbiol 17:2459\u20132476. https:\/\/doi.org\/10.1111\/1462-2920.12720","journal-title":"Environ Microbiol"},{"key":"2212_CR50","doi-asserted-by":"publisher","first-page":"8683","DOI":"10.3390\/rs70708683","volume":"7","author":"D Liu","year":"2015","unstructured":"Liu D, Pan D, Bai Y, He X, Wang D, Wei JA, Zhang L (2015) Remote sensing observation of particulate organic carbon in the Pearl River Estuary. Remote Sensing 7:8683\u20138704. https:\/\/doi.org\/10.3390\/rs70708683","journal-title":"Remote Sensing"},{"key":"2212_CR51","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.004660","author":"XW Liu","year":"2021","unstructured":"Liu XW, Chen BP, Lai QL, Shao ZZ, Jiang LJ (2021) Thiomicrorhabdus sediminis sp. nov., and Thiomicrorhabdus xiamenensis sp. nov., novel sulfur-oxidizing bacteria isolated from coastal sediments and an emended description of the genus Thiomicrorhabdus. Int J Syst Evol Microbiol. https:\/\/doi.org\/10.1099\/ijsem.0.004660","journal-title":"Int J Syst Evol Microbiol"},{"key":"2212_CR52","first-page":"1","volume":"44","author":"M Matsuyama","year":"1978","unstructured":"Matsuyama M (1978) Limnological aspects of meromictic Lake Suigetsu: its enviromental conditions and biological metabolism. Bulletin Faculty Fisheries Nagasaki University 44:1\u201366","journal-title":"Bulletin Faculty Fisheries Nagasaki University"},{"key":"2212_CR53","doi-asserted-by":"publisher","first-page":"e0150820","DOI":"10.1371\/journal.pone.0150820","volume":"11","author":"TJ Mincer","year":"2016","unstructured":"Mincer TJ, Aicher AC (2016) Methanol production by a broad phylogenetic array of marine phytoplankton. PLoS ONE 11:e0150820. https:\/\/doi.org\/10.1371\/journal.pone.0150820","journal-title":"PLoS ONE"},{"key":"2212_CR54","doi-asserted-by":"publisher","first-page":"190","DOI":"10.1264\/jsme2.ME10109","volume":"25","author":"Y Mori","year":"2010","unstructured":"Mori Y, Purdy KJ, Oakley BB, Kondo R (2010) Comprehensive detection of phototrophic sulfur bacteria using PCR primers that target reverse dissimilatory sulfite reductase gene. Microbes Environ 25:190\u2013196. https:\/\/doi.org\/10.1264\/jsme2.ME10109","journal-title":"Microbes Environ"},{"key":"2212_CR55","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1007\/s00203-013-0879-5","volume":"195","author":"Y Mori","year":"2013","unstructured":"Mori Y, Kataoka T, Okamura T, Kondo R (2013) Dominance of green sulfur bacteria in the chemocline of the meromictic Lake Suigetsu, Japan, as revealed by dissimilatory sulfite reductase gene analysis. Arch Microbiol 195:303\u2013312. https:\/\/doi.org\/10.1007\/s00203-013-0879-5","journal-title":"Arch Microbiol"},{"key":"2212_CR56","doi-asserted-by":"publisher","first-page":"111","DOI":"10.3800\/pbr.10.111","volume":"10","author":"Y Mori","year":"2015","unstructured":"Mori Y, Kataoka T, Kondo R (2015) Use of stable isotope probing to identify bacterial species involved in CO2 fixation in the water just below the oxycline of the meromictic Lake Suigetsu, Japan. Plankon Benthos Res 10:111\u2013120. https:\/\/doi.org\/10.3800\/pbr.10.111","journal-title":"Plankon Benthos Res"},{"key":"2212_CR57","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1128\/Mmbr.00028-10","volume":"75","author":"RJ Newton","year":"2011","unstructured":"Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S (2011) A Guide to the Natural History of Freshwater Lake Bacteria. Microbiol Mol Biol Rev 75:14\u201349. https:\/\/doi.org\/10.1128\/Mmbr.00028-10","journal-title":"Microbiol Mol Biol Rev"},{"key":"2212_CR58","doi-asserted-by":"publisher","first-page":"4505","DOI":"10.5194\/hess-19-4505-2015","volume":"19","author":"E Nixdorf","year":"2015","unstructured":"Nixdorf E, Boehrer B (2015) Quantitative analysis of biogeochemically controlled density stratification in an iron-meromictic lake. Hydrol Earth Syst Sci 19:4505\u20134515. https:\/\/doi.org\/10.5194\/hess-19-4505-2015","journal-title":"Hydrol Earth Syst Sci"},{"key":"2212_CR59","doi-asserted-by":"publisher","first-page":"228","DOI":"10.1264\/jsme2.ME12193","volume":"28","author":"T Nunoura","year":"2013","unstructured":"Nunoura T, Hirai M, Miyazaki M, Kazama H, Makita H, Hirayama H, Furushima Y, Yamamoto H, Imachi H, Takai K (2013) Isolation and characterization of a thermophilic, obligately anaerobic and heterotrophic marine Chloroflexi bacterium from a Chloroflexi-dominated microbial community associated with a japanese shallow hydrothermal system, and proposal for Thermomarinilinea lacunofontalis gen. nov., sp. nov. Microbes Environ 28:228\u2013235. https:\/\/doi.org\/10.1264\/jsme2.ME12193","journal-title":"Microbes Environ"},{"key":"2212_CR60","unstructured":"Oksanen J, Simpson G, Blanchet F, Kindt R, Legendre P, Minchin P, O\u2019Hara R, Solymos P, Stevens M, Szoecs E, Wagner H, Barbour M, Bedward M, Bolker B, Borcard D, Borman T, Carvalho G, Chirico M, De Caceres M, Durand S, Evangelista H, FitzJohn R, Friendly M, Furneaux B, Hannigan G, Hill M, Lahti L, Martino C, McGlinn D, Ouellette M, Ribeiro CE, Smith T, Stier A, Ter Braak C, Weedon J (2025) vegan: Community Ecology Package. In:"},{"key":"2212_CR61","doi-asserted-by":"publisher","first-page":"2478","DOI":"10.1038\/ismej.2014.100","volume":"8","author":"MG Pachiadaki","year":"2014","unstructured":"Pachiadaki MG, Yakimov MM, LaCono V, Leadbetter E, Edgcomb V (2014) Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin. ISME J 8:2478\u20132489. https:\/\/doi.org\/10.1038\/ismej.2014.100","journal-title":"ISME J"},{"key":"2212_CR62","doi-asserted-by":"publisher","first-page":"3481","DOI":"10.1111\/1462-2920.12445","volume":"17","author":"RJ Parsons","year":"2015","unstructured":"Parsons RJ, Nelson CE, Carlson CA, Denman CC, Andersson AJ, Kledzik AL, Vergin KL, McNally SP, Treusch AH, Giovannoni SJ (2015) Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil\u2019s Hole, Bermuda. Environ Microbiol 17:3481\u20133499. https:\/\/doi.org\/10.1111\/1462-2920.12445","journal-title":"Environ Microbiol"},{"key":"2212_CR63","doi-asserted-by":"publisher","first-page":"e1195","DOI":"10.1002\/mbo3.1195","volume":"10","author":"M Pavlovska","year":"2021","unstructured":"Pavlovska M, Prekrasna I, Dykyi E, Zotov A, Dzhulai A, Frolova A, Slobodnik J, Stoica E (2021) Niche partitioning of bacterial communities along the stratified water column in the Black Sea. Microbiologyopen 10:e1195. https:\/\/doi.org\/10.1002\/mbo3.1195","journal-title":"Microbiologyopen"},{"key":"2212_CR64","doi-asserted-by":"publisher","first-page":"1419","DOI":"10.4319\/lo.2003.48.4.1419","volume":"48","author":"F Peeters","year":"2003","unstructured":"Peeters F, Finger D, Hofer M, Brennwald M, Livingstone DM, Kipfer R (2003) Deep-water renewal in Lake Issyk-Kul driven by differential cooling. Limnol Oceanogr 48:1419\u20131431. https:\/\/doi.org\/10.4319\/lo.2003.48.4.1419","journal-title":"Limnol Oceanogr"},{"key":"2212_CR65","doi-asserted-by":"publisher","first-page":"1823","DOI":"10.1093\/bioinformatics\/bts252","volume":"28","author":"E Pruesse","year":"2012","unstructured":"Pruesse E, Peplies J, Gl\u00f6ckner FO (2012) SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823\u20131829. https:\/\/doi.org\/10.1093\/bioinformatics\/bts252","journal-title":"Bioinformatics"},{"key":"2212_CR66","doi-asserted-by":"publisher","first-page":"D590","DOI":"10.1093\/nar\/gks1219","volume":"41","author":"C Quast","year":"2013","unstructured":"Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Gl\u00f6ckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:D590\u2013D596. https:\/\/doi.org\/10.1093\/nar\/gks1219","journal-title":"Nucleic Acids Res"},{"key":"2212_CR67","unstructured":"R Core Team (2021) R: A language and environment for statistical computing. In. R Foundation for Statistical Computing, Vienna, Austria."},{"key":"2212_CR68","doi-asserted-by":"publisher","first-page":"37","DOI":"10.3390\/d11030037","volume":"11","author":"C Raffa","year":"2019","unstructured":"Raffa C, Rizzo C, Strous M, De Domenico E, Sanfilippo M, Michaud L, Lo Giudice A (2019) Prokaryotic Dynamics in the Meromictic Coastal Lake Faro (Sicily, Italy). Diversity-Basel 11:37. https:\/\/doi.org\/10.3390\/d11030037","journal-title":"Diversity-Basel"},{"key":"2212_CR69","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiv105","author":"A Ramachandran","year":"2015","unstructured":"Ramachandran A, Walsh DA (2015) Investigation of XoxF methanol dehydrogenases reveals new methylotrophic bacteria in pelagic marine and freshwater ecosystems. FEMS Microbiol Ecol. https:\/\/doi.org\/10.1093\/femsec\/fiv105","journal-title":"FEMS Microbiol Ecol"},{"key":"2212_CR70","doi-asserted-by":"publisher","first-page":"100145","DOI":"10.1016\/j.qsa.2023.100145","volume":"13","author":"CL Rex","year":"2024","unstructured":"Rex CL, Tyler JJ, Nagaya K, Staff RA, Leng MJ, Yamada K, Kitaba I, Kitagawa J, Kojima H, Nakagawa T (2024) The contemporary stable isotope hydrology of Lake Suigetsu and surrounding catchment (Japan) and its implications for sediment-derived palaeoclimate records. Quaternary Sci Adv 13:100145. https:\/\/doi.org\/10.1016\/j.qsa.2023.100145","journal-title":"Quaternary Sci Adv"},{"key":"2212_CR71","doi-asserted-by":"publisher","first-page":"2611","DOI":"10.1007\/s10750-023-05171-0","volume":"850","author":"JL Rodrigues","year":"2023","unstructured":"Rodrigues JL, Mac\u00eado RL, Sarmento H, Pimenta VRA, Alonso C, Teixeira CR, Pagliosa PR, Netto SA, Santos NCL, Daura-Jorge FG, Rocha O, Horta P, Branco JO, Sartor R, Muller J, Cionek VM (2023) From ecological functions to ecosystem services: linking coastal lagoons biodiversity with human well-being. Hydrobiologia 850:2611\u20132653. https:\/\/doi.org\/10.1007\/s10750-023-05171-0","journal-title":"Hydrobiologia"},{"key":"2212_CR72","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1016\/j.gene.2015.10.011","volume":"576","author":"T Sakami","year":"2016","unstructured":"Sakami T, Watanabe T, Kakehi S, Taniuchi Y, Kuwata A (2016) Spatial variation of bacterial community composition at the expiry of spring phytoplankton bloom in Sendai Bay, Japan. Gene 576:610\u2013617. https:\/\/doi.org\/10.1016\/j.gene.2015.10.011","journal-title":"Gene"},{"key":"2212_CR73","doi-asserted-by":"publisher","first-page":"2442","DOI":"10.1038\/ismej.2015.55","volume":"9","author":"MM Salcher","year":"2015","unstructured":"Salcher MM, Neuenschwander SM, Posch T, Pernthaler J (2015) The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. ISME J 9:2442\u20132453. https:\/\/doi.org\/10.1038\/ismej.2015.55","journal-title":"ISME J"},{"key":"2212_CR74","doi-asserted-by":"publisher","first-page":"3233","DOI":"10.1111\/j.1462-2920.2009.02044.x","volume":"11","author":"J Schmidtova","year":"2009","unstructured":"Schmidtova J, Hallam SJ, Baldwin SA (2009) Phylogenetic diversity of transition and anoxic zone bacterial communities within a near-shore anoxic basin: Nitinat Lake. Environ Microbiol 11:3233\u20133251. https:\/\/doi.org\/10.1111\/j.1462-2920.2009.02044.x","journal-title":"Environ Microbiol"},{"key":"2212_CR75","doi-asserted-by":"publisher","first-page":"1483","DOI":"10.1038\/ismej.2016.198","volume":"11","author":"M Simon","year":"2017","unstructured":"Simon M, Scheuner C, Meier-Kolthoff JP, Brinkhoff T, Wagner-D\u00f6bler I, Ulbrich M, Klenk HP, Schomburg D, Petersen J, G\u00f6ker M (2017) Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats. ISME J 11:1483\u20131499. https:\/\/doi.org\/10.1038\/ismej.2016.198","journal-title":"ISME J"},{"key":"2212_CR76","doi-asserted-by":"publisher","DOI":"10.1264\/jsme2.ME20033","author":"H Takebe","year":"2020","unstructured":"Takebe H, Tominaga K, Fujiwara K, Yamamoto K, Yoshida T (2020) Differential responses of a coastal prokaryotic community to phytoplanktonic organic matter derived from cellular components and exudates. Microbes Environ. https:\/\/doi.org\/10.1264\/jsme2.ME20033","journal-title":"Microbes Environ"},{"key":"2212_CR77","doi-asserted-by":"publisher","first-page":"e76910","DOI":"10.1371\/journal.pone.0076910","volume":"8","author":"AS Tanabe","year":"2013","unstructured":"Tanabe AS, Toju H (2013) Two new computational methods for universal dna barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants. PLoS ONE 8:e76910. https:\/\/doi.org\/10.1371\/journal.pone.0076910","journal-title":"PLoS ONE"},{"key":"2212_CR78","doi-asserted-by":"publisher","first-page":"608","DOI":"10.1126\/science.1218344","volume":"336","author":"H Teeling","year":"2012","unstructured":"Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, Bennke CM, Kassabgy M, Huang S, Mann AJ, Waldmann J, Weber M, Klindworth A, Otto A, Lange J, Bernhardt J, Reinsch C, Hecker M, Peplies J, Bockelmann FD, Callies U, Gerdts G, Wichels A, Wiltshire KH, Gl\u00f6ckner FO, Schweder T, Amann R (2012) Substrate-controlled succession of marine bacterioplankton populations Induced by a phytoplankton bloom. Science 336:608\u2013611. https:\/\/doi.org\/10.1126\/science.1218344","journal-title":"Science"},{"key":"2212_CR79","doi-asserted-by":"publisher","first-page":"e11888","DOI":"10.7554\/eLife.11888","volume":"5","author":"H Teeling","year":"2016","unstructured":"Teeling H, Fuchs BM, Bennke CM, Kr\u00fcger K, Chafee M, Kappelmann L, Reintjes G, Waldmann J, Quast C, Gl\u00f6ckner FO, Lucas J, Wichels A, Gerdts G, Wiltshire KH, Amann RI (2016) Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. Elife 5:e11888. https:\/\/doi.org\/10.7554\/eLife.11888","journal-title":"Elife"},{"key":"2212_CR80","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1038\/nature19068","volume":"536","author":"D Tsementzi","year":"2016","unstructured":"Tsementzi D, Wu JY, Deutsch S, Nath S, Rodriguez LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ (2016) SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature 536:179\u2013183. https:\/\/doi.org\/10.1038\/nature19068","journal-title":"Nature"},{"key":"2212_CR81","doi-asserted-by":"publisher","first-page":"557","DOI":"10.4319\/lo.2001.46.3.0557","volume":"46","author":"E Urbach","year":"2001","unstructured":"Urbach E, Vergin KL, Young L, Morse A, Larson GL, Giovannoni SJ (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol Oceanogr 46:557\u2013572. https:\/\/doi.org\/10.4319\/lo.2001.46.3.0557","journal-title":"Limnol Oceanogr"},{"key":"2212_CR82","doi-asserted-by":"publisher","first-page":"1684","DOI":"10.3389\/fmicb.2017.01684","volume":"8","author":"EM van den Berg","year":"2017","unstructured":"van den Berg EM, Elisrio MP, Kuenen JG, Kleerebezem R, van Loosdrecht MCM (2017) Fermentative bacteria influence the competition between denitrifiers and DNRA bacteria. Front Microbiol 8:1684. https:\/\/doi.org\/10.3389\/fmicb.2017.01684","journal-title":"Front Microbiol"},{"key":"2212_CR83","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1016\/j.jhydrol.2009.04.004","volume":"372","author":"C von Rohden","year":"2009","unstructured":"von Rohden C, Ilmberger J, Boehrer B (2009) Assessing groundwater coupling and vertical exchange in a meromictic mining lake with an SF6-tracer experiment. J Hydrol 372:102\u2013108. https:\/\/doi.org\/10.1016\/j.jhydrol.2009.04.004","journal-title":"J Hydrol"},{"key":"2212_CR84","doi-asserted-by":"publisher","first-page":"578","DOI":"10.1126\/science.1175309","volume":"326","author":"DA Walsh","year":"2009","unstructured":"Walsh DA, Zaikova E, Howes CG, Song YC, Wright JJ, Tringe SG, Tortell PD, Hallam SJ (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578\u2013582. https:\/\/doi.org\/10.1126\/science.1175309","journal-title":"Science"},{"key":"2212_CR85","doi-asserted-by":"publisher","first-page":"2458","DOI":"10.1038\/s41467-020-16236-2","volume":"11","author":"ND Ward","year":"2020","unstructured":"Ward ND, Megonigal JP, Bond-Lamberty B, Bailey VL, Butman D, Canuel EA, Diefenderfer H, Ganju NK, Go\u00f1i MA, Graham EB, Hopkinson CS, Khangaonkar T, Langley JA, McDowell NG, Myers-Pigg AN, Neumann RB, Osburn CL, Price RM, Rowland J, Sengupta A, Simard M, Thornton PE, Tzortziou M, Vargas R, Weisenhorn PB, Windham-Myers L (2020) Representing the function and sensitivity of coastal interfaces in Earth system models. Nat Commun 11:2458. https:\/\/doi.org\/10.1038\/s41467-020-16236-2","journal-title":"Nat Commun"},{"key":"2212_CR86","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1111\/j.1462-2920.2004.00561.x","volume":"6","author":"F Warnecke","year":"2004","unstructured":"Warnecke F, Amann R, Pernthaler J (2004) Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol 6:242\u2013253. https:\/\/doi.org\/10.1111\/j.1462-2920.2004.00561.x","journal-title":"Environ Microbiol"},{"key":"2212_CR87","doi-asserted-by":"publisher","first-page":"126320","DOI":"10.1016\/j.syapm.2022.126320","volume":"45","author":"T Watanabe","year":"2022","unstructured":"Watanabe T, Kubo K, Kamei Y, Kojima H, Fukui M (2022) Dissimilatory microbial sulfur and methane metabolism in the water column of a shallow meromictic lake. Syst Appl Microbiol 45:126320. https:\/\/doi.org\/10.1016\/j.syapm.2022.126320","journal-title":"Syst Appl Microbiol"},{"key":"2212_CR88","doi-asserted-by":"publisher","first-page":"1651","DOI":"10.1038\/ismej.2013.44","volume":"7","author":"L Wilhelm","year":"2013","unstructured":"Wilhelm L, Singer GA, Fasching C, Battin TJ, Besemer K (2013) Microbial biodiversity in glacier-fed streams. ISME J 7:1651\u20131660. https:\/\/doi.org\/10.1038\/ismej.2013.44","journal-title":"ISME J"},{"key":"2212_CR89","doi-asserted-by":"publisher","first-page":"741077","DOI":"10.3389\/fmicb.2021.741077","volume":"12","author":"TJ Williams","year":"2021","unstructured":"Williams TJ, Allen MA, Berengut JF, Cavicchioli R (2021) Shedding light on microbial \u201cdark matter\u201d: insights into novel cloacimonadota and omnitrophota from an antarctic lake. Front Microbiol 12:741077. https:\/\/doi.org\/10.3389\/fmicb.2021.741077","journal-title":"Front Microbiol"},{"key":"2212_CR90","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1038\/nrmicro2778","volume":"10","author":"JJ Wright","year":"2012","unstructured":"Wright JJ, Konwar KM, Hallam SJ (2012) Microbial ecology of expanding oxygen minimum zones. Nat Rev Microbiol 10:381\u2013394. https:\/\/doi.org\/10.1038\/nrmicro2778","journal-title":"Nat Rev Microbiol"},{"key":"2212_CR91","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1264\/jsme2.ME09151S","volume":"24","author":"T Yamada","year":"2009","unstructured":"Yamada T, Sekiguchi Y (2009) Cultivation of uncultured Chloroflexi subphyla: significance and ecophysiology of formerly uncultured Chloroflexi \u2018subphylum I\u2019 with natural and biotechnological relevance. Microbes Environ 24:205\u2013216. https:\/\/doi.org\/10.1264\/jsme2.ME09151S","journal-title":"Microbes Environ"},{"key":"2212_CR92","doi-asserted-by":"publisher","first-page":"1331","DOI":"10.1099\/ijs.0.64169-0","volume":"56","author":"T Yamada","year":"2006","unstructured":"Yamada T, Sekiguchi Y, Hanada S, Imachi H, Ohashi A, Harada H, Kamagata Y (2006) Anaerolinea thermolimosa sp nov., Levilinea saccharolytica gen. nov., sp nov and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi. Int J Syst Evol Microbiol 56:1331\u20131340. https:\/\/doi.org\/10.1099\/ijs.0.64169-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"2212_CR93","doi-asserted-by":"publisher","first-page":"384","DOI":"10.1134\/S199542551404012x","volume":"7","author":"ES Zadereev","year":"2014","unstructured":"Zadereev ES, Tolomeev AP, Drobotov AV, Kolmakova AA (2014) Impact of weather variability on spatial and seasonal dynamics of dissolved and suspended nutrients in water column of meromictic Lake Shira. Contemp Probl Ecol 7:384\u2013396. https:\/\/doi.org\/10.1134\/S199542551404012x","journal-title":"Contemp Probl Ecol"},{"key":"2212_CR94","doi-asserted-by":"publisher","first-page":"141","DOI":"10.3354\/ame028141","volume":"28","author":"G Zwart","year":"2002","unstructured":"Zwart G, Crump BC, Agterveld MPKV, Hagen F, Han SK (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28:141\u2013155. https:\/\/doi.org\/10.3354\/ame028141","journal-title":"Aquat Microb Ecol"}],"container-title":["Antonie van Leeuwenhoek"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-025-02212-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10482-025-02212-7","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-025-02212-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T10:42:49Z","timestamp":1768473769000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10482-025-02212-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11,21]]},"references-count":95,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,1]]}},"alternative-id":["2212"],"URL":"https:\/\/doi.org\/10.1007\/s10482-025-02212-7","relation":{},"ISSN":["0003-6072","1572-9699"],"issn-type":[{"value":"0003-6072","type":"print"},{"value":"1572-9699","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11,21]]},"assertion":[{"value":"1 July 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 November 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 November 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}],"article-number":"1"}}