{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,3]],"date-time":"2026-08-03T14:45:54Z","timestamp":1785768354410,"version":"3.56.0"},"reference-count":72,"publisher":"Springer Science and Business Media LLC","issue":"8","license":[{"start":{"date-parts":[[2026,7,28]],"date-time":"2026-07-28T00:00:00Z","timestamp":1785196800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,7,28]],"date-time":"2026-07-28T00:00:00Z","timestamp":1785196800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100004731","name":"Natural Science Foundation of Zhejiang Province","doi-asserted-by":"publisher","award":["ZCLMS26E0901"],"award-info":[{"award-number":["ZCLMS26E0901"]}],"id":[{"id":"10.13039\/501100004731","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Antonie van Leeuwenhoek"],"published-print":{"date-parts":[[2026,8]]},"DOI":"10.1007\/s10482-026-02388-6","type":"journal-article","created":{"date-parts":[[2026,7,28]],"date-time":"2026-07-28T15:00:32Z","timestamp":1785250832000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Ulva\u00a0fasciata litter decomposition fuels microbial restructuring and antibiotic resistance proliferation in mariculture sediment"],"prefix":"10.1007","volume":"119","author":[{"given":"Zihan","family":"Tian","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuping","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wuping","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lijuan","family":"Feng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guangfeng","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,28]]},"reference":[{"key":"2388_CR1","doi-asserted-by":"publisher","first-page":"47","DOI":"10.14210\/bjast.v27n1.19100","volume":"27","author":"T Andrade Figueira","year":"2023","unstructured":"Andrade Figueira T, Dos Santos Costa D, C\u00e9sar Gon\u00e7alves Pollery R, Yoneshigue-Valentin Y, Enrich-Prast A, Peruzzi De Oliveira V (2023) Modelling nitrogen and phosphorus recovery potential by Ulva fasciata. Braz J Aquat Sci Technol 27:47. https:\/\/doi.org\/10.14210\/bjast.v27n1.19100","journal-title":"Braz J Aquat Sci Technol"},{"key":"2388_CR2","doi-asserted-by":"publisher","first-page":"246","DOI":"10.25122\/jml-2023-0404","volume":"17","author":"A-P Baciu","year":"2024","unstructured":"Baciu A-P, Baciu C, Baciu G, Gurau G (2024) The burden of antibiotic resistance of the main microorganisms causing infections in humans\u2014review of the literature. J Med Life 17:246\u2013260. https:\/\/doi.org\/10.25122\/jml-2023-0404","journal-title":"J Med Life"},{"key":"2388_CR3","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics 30:2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"key":"2388_CR4","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2021.105131","volume":"96","author":"MA Brovedan","year":"2021","unstructured":"Brovedan MA, Marchiaro PM, D\u00edaz MS, Faccone D, Corso A, Pasteran F, Viale AM, Limansky AS (2021) Pseudomonas putida group species as reservoirs of mobilizable Tn402-like class 1 integrons carrying blaVIM-2 metallo-\u03b2-lactamase genes. Infect Genet Evol 96:105131. https:\/\/doi.org\/10.1016\/j.meegid.2021.105131","journal-title":"Infect Genet Evol"},{"key":"2388_CR5","doi-asserted-by":"publisher","DOI":"10.1016\/j.envint.2024.108704","volume":"187","author":"Y Cai","year":"2024","unstructured":"Cai Y, Chen C, Sun T, Li G, Wang W, Zhao H, An T (2024) Mariculture waters as yet another hotbed for the creation and transfer of new antibiotic-resistant pathogenome. Environ Int 187:108704. https:\/\/doi.org\/10.1016\/j.envint.2024.108704","journal-title":"Environ Int"},{"key":"2388_CR6","doi-asserted-by":"publisher","first-page":"903","DOI":"10.1080\/02757540.2019.1668378","volume":"35","author":"CVFDS Campos","year":"2019","unstructured":"Campos CVFDS, Moraes LBSD, Farias RDS, Severi W, Brito LO, G\u00e1lvez AO (2019) Phytoplankton communities in aquaculture system (integration of shrimp and seaweed). Chem Ecol 35:903\u2013921. https:\/\/doi.org\/10.1080\/02757540.2019.1668378","journal-title":"Chem Ecol"},{"key":"2388_CR7","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1126\/science.aal2130","volume":"355","author":"V Chaikeeratisak","year":"2017","unstructured":"Chaikeeratisak V, Nguyen K, Khanna K, Brilot AF, Erb ML, Coker JKC, Vavilina A, Newton GL, Buschauer R, Pogliano K, Villa E, Agard DA, Pogliano J (2017) Assembly of a nucleus-like structure during viral replication in bacteria. Science 355:194\u2013197. https:\/\/doi.org\/10.1126\/science.aal2130","journal-title":"Science"},{"key":"2388_CR8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jece.2024.113534","volume":"12","author":"X Chen","year":"2024","unstructured":"Chen X, Ping Q, Lu Q, Yang Z, Wang L, Li Y (2024) Insight into the effect of CaO2 addition on the prevalence and removal of antibiotic resistance genes during anaerobic sludge fermentation under ambient conditions. J Environ Chem Eng 12:113534. https:\/\/doi.org\/10.1016\/j.jece.2024.113534","journal-title":"J Environ Chem Eng"},{"key":"2388_CR9","doi-asserted-by":"publisher","DOI":"10.1093\/jambio\/lxae129","volume":"135","author":"K Dadeh Amirfard","year":"2024","unstructured":"Dadeh Amirfard K, Moriyama M, Suzuki S, Sano D (2024) Effect of environmental factors on conjugative transfer of antibiotic resistance genes in aquatic settings. J Appl Microbiol 135:lxae129. https:\/\/doi.org\/10.1093\/jambio\/lxae129","journal-title":"J Appl Microbiol"},{"key":"2388_CR10","doi-asserted-by":"publisher","DOI":"10.1016\/j.envint.2020.105554","volume":"137","author":"C Deng","year":"2020","unstructured":"Deng C, Liu X, Li L, Shi J, Guo W, Xue J (2020) Temporal dynamics of antibiotic resistant genes and their association with the bacterial community in a water-sediment mesocosm under selection by 14 antibiotics. Environ Int 137:105554. https:\/\/doi.org\/10.1016\/j.envint.2020.105554","journal-title":"Environ Int"},{"key":"2388_CR11","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2024.740836","volume":"587","author":"M Drawbridge","year":"2024","unstructured":"Drawbridge M, Huo Y, Fanning E, Polizzi T, Booher L (2024) Growth, productivity and nutrient removal rates of sea lettuce (Ulva lactuca) in a land-based IMTA system with white seabass (Atractoscion nobilis) in Southern California. Aquaculture 587:740836. https:\/\/doi.org\/10.1016\/j.aquaculture.2024.740836","journal-title":"Aquaculture"},{"key":"2388_CR12","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2023.167032","volume":"905","author":"J Du","year":"2023","unstructured":"Du J, Wang X, Tao T, Zhang X, Jin B, Zhao J, Lv Y, Zhang Q, Hu K, Qv W, Xu Y, Cao X (2023) Polystyrene size-dependent impacts on microbial decomposers and nutrient cycling in streams. Sci Total Environ 905:167032. https:\/\/doi.org\/10.1016\/j.scitotenv.2023.167032","journal-title":"Sci Total Environ"},{"key":"2388_CR13","doi-asserted-by":"publisher","DOI":"10.1016\/j.ecoenv.2025.119096","volume":"304","author":"Y Duan","year":"2025","unstructured":"Duan Y, Zhang J, Petropoulos E, Zhao J, Chen Y, Wang L, Wang X, Jia R, Wu F, Li Y (2025) Metagenomic profiling of antibiotic resistance genes in terrestrial ecosystems across China. Ecotoxicol Environ Saf 304:119096. https:\/\/doi.org\/10.1016\/j.ecoenv.2025.119096","journal-title":"Ecotoxicol Environ Saf"},{"key":"2388_CR27","doi-asserted-by":"publisher","first-page":"2013","DOI":"10.1007\/s10811-024-03242-w","volume":"36","author":"JP Faisan Jr","year":"2021","unstructured":"Faisan Jr JP et al. (2024) Temporal variation in the incidence of seaweed health problems affecting farmed. J Appl Phycol 36:2013\u20132028","journal-title":"J Appl Phycol"},{"key":"2388_CR14","doi-asserted-by":"publisher","DOI":"10.1016\/j.biortech.2020.123274","author":"L Feng","year":"2020","unstructured":"Feng L (2020) Response of denitrifying community, denitrification genes and antibiotic resistance genes to oxytetracycline stress in polycaprolactone supported solid-phase denitrification reactor. Bioresource Technol. https:\/\/doi.org\/10.1016\/j.biortech.2020.123274","journal-title":"Bioresource Technol"},{"key":"2388_CR15","doi-asserted-by":"publisher","first-page":"346","DOI":"10.1016\/j.ecoleng.2015.09.041","volume":"84","author":"L Feng","year":"2015","unstructured":"Feng L, Yang G, Yang Q, Zhu L, Xu X, Gao F (2015) Enhanced simultaneous nitrification and denitrification via addition of biodegradable carrier Phragmites communis in biofilm pretreatment reactor treating polluted source water. Ecol Eng 84:346\u2013353. https:\/\/doi.org\/10.1016\/j.ecoleng.2015.09.041","journal-title":"Ecol Eng"},{"key":"2388_CR16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2022.115597","volume":"318","author":"L Feng","year":"2022","unstructured":"Feng L, Xiao C, Luo Y, Qiao Y, Chen D (2022) The fate of antibiotic resistance genes, microbial community, and potential pathogens in the maricultural sediment by live seaweeds and oxytetracycline. J Environ Manage 318:115597. https:\/\/doi.org\/10.1016\/j.jenvman.2022.115597","journal-title":"J Environ Manage"},{"key":"2388_CR17","doi-asserted-by":"publisher","first-page":"4929","DOI":"10.1093\/nar\/gkad241","volume":"51","author":"M Fernandez","year":"2023","unstructured":"Fernandez M, Shkumatov AV, Liu Y, Stulemeijer C, Derclaye S, Efremov RG, Hallet B, Alsteens D (2023) AFM-based force spectroscopy unravels stepwise formation of the DNA transposition complex in the widespread Tn3 family mobile genetic elements. Nucleic Acids Res 51:4929\u20134941. https:\/\/doi.org\/10.1093\/nar\/gkad241","journal-title":"Nucleic Acids Res"},{"key":"2388_CR18","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1126\/science.1220761","volume":"337","author":"KJ Forsberg","year":"2012","unstructured":"Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MOA, Dantas G (2012) The shared antibiotic resistome of soil bacteria and human pathogens. Science 337:1107\u20131111. https:\/\/doi.org\/10.1126\/science.1220761","journal-title":"Science"},{"key":"2388_CR19","doi-asserted-by":"publisher","first-page":"612","DOI":"10.1038\/nature13377","volume":"509","author":"KJ Forsberg","year":"2014","unstructured":"Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G (2014) Bacterial phylogeny structures soil resistomes across habitats. Nature 509:612\u2013616. https:\/\/doi.org\/10.1038\/nature13377","journal-title":"Nature"},{"key":"2388_CR20","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.140916","volume":"745","author":"X Guo","year":"2020","unstructured":"Guo X, Sun X, Chen Y, Hou L, Liu M, Yang Y (2020) Antibiotic resistance genes in biofilms on plastic wastes in an estuarine environment. Sci Total Environ 745:140916. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.140916","journal-title":"Sci Total Environ"},{"key":"2388_CR21","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2023.1305294","volume":"14","author":"EM Halawa","year":"2024","unstructured":"Halawa EM, Fadel M, Al-Rabia MW, Behairy A, Nouh NA, Abdo M, Olga R, Fericean L, Atwa AM, El-Nablaway M, Abdeen A (2024) Antibiotic action and resistance: updated review of mechanisms, spread, influencing factors, and alternative approaches for combating resistance. Front Pharmacol 14:1305294. https:\/\/doi.org\/10.3389\/fphar.2023.1305294","journal-title":"Front Pharmacol"},{"key":"2388_CR22","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2023.115797","volume":"197","author":"X Hu","year":"2023","unstructured":"Hu X, Cao Y, Zhao X, Su H, Wen G, Yang Y (2023) Effect of bacterial community succession on environmental factors during litter decomposition of the seaweed Gracilaria lemaneiformis. Mar Pollut Bull 197:115797. https:\/\/doi.org\/10.1016\/j.marpolbul.2023.115797","journal-title":"Mar Pollut Bull"},{"key":"2388_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2024.136725","volume":"484","author":"C Huang","year":"2025","unstructured":"Huang C, Cui M, Li T, Zheng C, Qiu M, Shan M, Li B, Zhang L, Yu Y, Fang H (2025) Migration of fungicides, antibiotics and resistome in the soil-lettuce system. J Hazard Mater 484:136725. https:\/\/doi.org\/10.1016\/j.jhazmat.2024.136725","journal-title":"J Hazard Mater"},{"key":"2388_CR24","doi-asserted-by":"publisher","DOI":"10.1016\/j.jece.2021.105122","volume":"9","author":"D Jeong","year":"2021","unstructured":"Jeong D, Lim H, Kim W (2021) Low-ammonia wastewater treatment by integration of partial nitritation and anaerobic ammonium oxidation (anammox) at 20 \u00b0C. J Environ Chem Eng 9:105122. https:\/\/doi.org\/10.1016\/j.jece.2021.105122","journal-title":"J Environ Chem Eng"},{"key":"2388_CR25","doi-asserted-by":"publisher","first-page":"13128","DOI":"10.1093\/nar\/gkae948","volume":"52","author":"MG Jespersen","year":"2024","unstructured":"Jespersen MG, Hayes AJ, Tong SYC, Davies MR (2024) Insertion sequence elements and unique symmetrical genomic regions mediate chromosomal inversions in Streptococcus pyogenes. Nucleic Acids Res 52:13128\u201313137. https:\/\/doi.org\/10.1093\/nar\/gkae948","journal-title":"Nucleic Acids Res"},{"key":"2388_CR26","doi-asserted-by":"publisher","first-page":"1049","DOI":"10.1002\/jobm.202100201","volume":"61","author":"Z Jian","year":"2021","unstructured":"Jian Z, Zeng L, Xu T, Sun S, Yan S, Yang L, Huang Y, Jia J, Dou T (2021) Antibiotic resistance genes in bacteria: occurrence, spread, and control. J Basic Microbiol 61:1049\u20131070. https:\/\/doi.org\/10.1002\/jobm.202100201","journal-title":"J Basic Microbiol"},{"key":"2388_CR28","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-88988-0","volume":"15","author":"K Kanoh","year":"2025","unstructured":"Kanoh K, Su\u2019etsugu M (2025) Real-time analysis of initiation regulation systems during the progression of the reconstituted chromosomal replication cycle. Sci Rep 15:4727. https:\/\/doi.org\/10.1038\/s41598-025-88988-0","journal-title":"Sci Rep"},{"key":"2388_CR29","doi-asserted-by":"publisher","first-page":"429","DOI":"10.1038\/s41586-022-05013-4","volume":"608","author":"TG Laughlin","year":"2022","unstructured":"Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Armbruster E, McCammon JA, Amaro RE, Pogliano J, Corbett KD, Villa E (2022) Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature 608:429\u2013435. https:\/\/doi.org\/10.1038\/s41586-022-05013-4","journal-title":"Nature"},{"key":"2388_CR30","doi-asserted-by":"publisher","first-page":"1658","DOI":"10.1093\/bioinformatics\/btl158","volume":"22","author":"W Li","year":"2006","unstructured":"Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658\u20131659. https:\/\/doi.org\/10.1093\/bioinformatics\/btl158","journal-title":"Bioinformatics"},{"key":"2388_CR31","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-S5-S12","volume":"14","author":"Y Liu","year":"2013","unstructured":"Liu Y, Guo J, Hu G, Zhu H (2013) Gene prediction in metagenomic fragments based on the SVM algorithm. BMC Bioinformatics 14:S12. https:\/\/doi.org\/10.1186\/1471-2105-14-S5-S12","journal-title":"BMC Bioinformatics"},{"key":"2388_CR32","doi-asserted-by":"publisher","DOI":"10.1016\/j.marenvres.2025.107010","volume":"205","author":"Z Liu","year":"2025","unstructured":"Liu Z, Zhang J, Chen J, Wang K, Zhang S (2025) Role of benthic fauna in the decomposition of Sargassum fusiforme litter. Mar Environ Res 205:107010. https:\/\/doi.org\/10.1016\/j.marenvres.2025.107010","journal-title":"Mar Environ Res"},{"key":"2388_CR33","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2020.111940","volume":"163","author":"Y Luo","year":"2021","unstructured":"Luo Y, Feng L, Yang G, Mu J (2021) The role of Ulva fasciata in the evolution of the microbial community and antibiotic resistance genes in maricultural sediments. Mar Pollut Bull 163:111940. https:\/\/doi.org\/10.1016\/j.marpolbul.2020.111940","journal-title":"Mar Pollut Bull"},{"key":"2388_CR34","doi-asserted-by":"publisher","DOI":"10.1016\/j.algal.2022.102749","volume":"65","author":"H Luo","year":"2022","unstructured":"Luo H, Xie S, Yang Y (2022) Potential removal capacity and secondary pollution risk evaluation of heavy metals in Gracilaria lemaneiformis from a typical seaweed farming base. Algal Res 65:102749. https:\/\/doi.org\/10.1016\/j.algal.2022.102749","journal-title":"Algal Res"},{"key":"2388_CR35","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2023.118091","volume":"341","author":"H Luo","year":"2023","unstructured":"Luo H, Yang Y, Xie S (2023) The ecological effect of large-scale coastal natural and cultivated seaweed litter decay processes: an overview and perspective. J Environ Manage 341:118091. https:\/\/doi.org\/10.1016\/j.jenvman.2023.118091","journal-title":"J Environ Manage"},{"key":"2388_CR36","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1038\/s41586-020-1946-0","volume":"578","author":"JB McBrien","year":"2020","unstructured":"McBrien JB, Mavigner M, Franchitti L, Smith SA, White E, Tharp GK, Walum H, Busman-Sahay K, Aguilera-Sandoval CR, Thayer WO, Spagnuolo RA, Kovarova M, Wahl A, Cervasi B, Margolis DM, Vanderford TH, Carnathan DG, Paiardini M, Lifson JD, Lee JH, Safrit JT, Bosinger SE, Estes JD, Derdeyn CA, Garcia JV, Kulpa DA, Chahroudi A, Silvestri G (2020) Robust and persistent reactivation of SIV and HIV by N-803 and depletion of CD8+ cells. Nature 578:154\u2013159. https:\/\/doi.org\/10.1038\/s41586-020-1946-0","journal-title":"Nature"},{"key":"2388_CR37","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms12030562","volume":"12","author":"L Mei","year":"2024","unstructured":"Mei L, Song Y, Liu X, Li K, Guo X, Liu L, Liu Y, Kozlakidis Z, Cheong IH, Wang D, Wei Q (2024) Characterization and implications of IncP-2A plasmid pMAS152 harboring multidrug resistance genes in extensively drug-resistant Pseudomonas aeruginosa. Microorganisms 12:562. https:\/\/doi.org\/10.3390\/microorganisms12030562","journal-title":"Microorganisms"},{"key":"2388_CR38","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2321190121","volume":"121","author":"CJ Morgan","year":"2024","unstructured":"Morgan CJ, Enustun E, Armbruster EG, Birkholz EA, Prichard A, Forman T, Aindow A, Wannasrichan W, Peters S, Inlow K, Shepherd IL, Razavilar A, Chaikeeratisak V, Adler BA, Cress BF, Doudna JA, Pogliano K, Villa E, Corbett KD, Pogliano J (2024) An essential and highly selective protein import pathway encoded by nucleus-forming phage. Proc Natl Acad Sci U S A 121:e2321190121. https:\/\/doi.org\/10.1073\/pnas.2321190121","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2388_CR39","doi-asserted-by":"publisher","DOI":"10.1016\/j.envres.2022.112888","volume":"209","author":"MP Narsing Rao","year":"2022","unstructured":"Narsing Rao MP, Luo Z-H, Dong Z-Y, Li Q, Liu B-B, Guo S-X, Nie G-X, Li W-J (2022) Metagenomic analysis further extends the role of chloroflexi in fundamental biogeochemical cycles. Environ Res 209:112888. https:\/\/doi.org\/10.1016\/j.envres.2022.112888","journal-title":"Environ Res"},{"key":"2388_CR40","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1223204","volume":"14","author":"D Nguyen","year":"2023","unstructured":"Nguyen D, Ovadia O, Guttman L (2023) Temporal force governs the microbial assembly associated with Ulva fasciata (Chlorophyta) from an integrated multi-trophic aquaculture system. Front Microbiol 14:1223204. https:\/\/doi.org\/10.3389\/fmicb.2023.1223204","journal-title":"Front Microbiol"},{"key":"2388_CR41","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1080\/17445302.2016.1186861","volume":"12","author":"SO Olanrewaju","year":"2017","unstructured":"Olanrewaju SO, Magee A, Kader ASA, Tee KF (2017) Simulation of offshore aquaculture system for macro algae (seaweed) oceanic farming. Ship Offshore Struct 12:553\u2013562. https:\/\/doi.org\/10.1080\/17445302.2016.1186861","journal-title":"Ship Offshore Struct"},{"key":"2388_CR42","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2019.135581","volume":"712","author":"X Pan","year":"2020","unstructured":"Pan X, Ping Y, Hu Y, Song Y, Zhang X, Li W, Cui L, Vymazal J (2020) Species traits and decomposability predict water quality changes during litter submergence. Sci Total Environ 712:135581. https:\/\/doi.org\/10.1016\/j.scitotenv.2019.135581","journal-title":"Sci Total Environ"},{"key":"2388_CR43","doi-asserted-by":"publisher","first-page":"1420","DOI":"10.1093\/bioinformatics\/bts174","volume":"28","author":"Y Peng","year":"2012","unstructured":"Peng Y, Leung HCM, Yiu SM, Chin FYL (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28:1420\u20131428. https:\/\/doi.org\/10.1093\/bioinformatics\/bts174","journal-title":"Bioinformatics"},{"key":"2388_CR44","doi-asserted-by":"publisher","first-page":"20190681","DOI":"10.1098\/rstb.2019.0681","volume":"375","author":"SD Quistad","year":"2020","unstructured":"Quistad SD, Doulcier G, Rainey PB (2020) Experimental manipulation of selfish genetic elements links genes to microbial community function. Philos Trans R Soc B 375:20190681. https:\/\/doi.org\/10.1098\/rstb.2019.0681","journal-title":"Philos Trans R Soc B"},{"key":"2388_CR45","doi-asserted-by":"publisher","first-page":"398","DOI":"10.3390\/app12010398","volume":"12","author":"L Resende","year":"2021","unstructured":"Resende L, Flores J, Moreira C, Pacheco D, Baeta A, Garcia AC, Rocha ACS (2021) Effective and low-maintenance IMTA system as effluent treatment unit for promoting sustainability in coastal aquaculture. Appl Sci 12:398. https:\/\/doi.org\/10.3390\/app12010398","journal-title":"Appl Sci"},{"key":"2388_CR46","doi-asserted-by":"publisher","first-page":"2145","DOI":"10.1007\/s10499-021-00739-w","volume":"29","author":"S Sarkar","year":"2021","unstructured":"Sarkar S, Rekha PN, Panigrahi A, Das RR, Rajamanickam S, Balasubramanian CP (2021) Integrated brackishwater farming of red seaweed Agarophyton tenuistipitatum and Pacific white leg shrimp Litopenaeus vannamei (Boone) in biofloc system: a production and bioremediation way out. Aquacult Int 29:2145\u20132159. https:\/\/doi.org\/10.1007\/s10499-021-00739-w","journal-title":"Aquacult Int"},{"key":"2388_CR47","doi-asserted-by":"publisher","DOI":"10.3390\/antiox11030481","volume":"11","author":"E Shin","year":"2022","unstructured":"Shin E, Ye Q, Lee S-J (2022) Active transposition of insertion sequences in prokaryotes: insights from the response of Deinococcus geothermalis to oxidative stress. Antioxidants 11:481. https:\/\/doi.org\/10.3390\/antiox11030481","journal-title":"Antioxidants"},{"key":"2388_CR48","doi-asserted-by":"publisher","first-page":"3035","DOI":"10.1111\/1462-2920.16481","volume":"25","author":"M Shintani","year":"2023","unstructured":"Shintani M, Vestergaard G, Milakovi\u0107 M, Kublik S, Smalla K, Schloter M, Udikovi\u0107\u2010Koli\u0107 N (2023) Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies. Environ Microbiol 25:3035\u20133051. https:\/\/doi.org\/10.1111\/1462-2920.16481","journal-title":"Environ Microbiol"},{"key":"2388_CR49","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-33871-z","volume":"13","author":"AV Shkumatov","year":"2022","unstructured":"Shkumatov AV, Aryanpour N, Oger CA, Goossens G, Hallet BF, Efremov RG (2022) Structural insight into Tn3 family transposition mechanism. Nat Commun 13:6155. https:\/\/doi.org\/10.1038\/s41467-022-33871-z","journal-title":"Nat Commun"},{"key":"2388_CR50","doi-asserted-by":"publisher","unstructured":"Stalder T, Barraud O, Casellas M, Dagot C, Ploy M-C (2012) Integron involvement in environmental spread of antibiotic resistance. Front Microbiol 3. https:\/\/doi.org\/10.3389\/fmicb.2012.00119","DOI":"10.3389\/fmicb.2012.00119"},{"key":"2388_CR51","doi-asserted-by":"publisher","DOI":"10.1016\/j.algal.2019.101583","volume":"42","author":"P Suthar","year":"2019","unstructured":"Suthar P, Gajaria TK, Reddy CRK (2019) Production of quality seaweed biomass through nutrient optimization for the sustainable land-based cultivation. Algal Res 42:101583. https:\/\/doi.org\/10.1016\/j.algal.2019.101583","journal-title":"Algal Res"},{"key":"2388_CR52","doi-asserted-by":"publisher","first-page":"10416","DOI":"10.1093\/nar\/gkae674","volume":"52","author":"Y Tang","year":"2024","unstructured":"Tang Y, Zhang J, Guan J, Liang W, Petassi MT, Zhang Y, Jiang X, Wang M, Wu W, Ou H-Y, Peters JE (2024) Transposition with Tn3-family elements occurs through interaction with the host \u03b2-sliding clamp processivity factor. Nucleic Acids Res 52:10416\u201310430. https:\/\/doi.org\/10.1093\/nar\/gkae674","journal-title":"Nucleic Acids Res"},{"key":"2388_CR53","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-022-08678-3","volume":"23","author":"S Tempel","year":"2022","unstructured":"Tempel S, Bedo J, Talla E (2022) From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes. BMC Genomics 23:451. https:\/\/doi.org\/10.1186\/s12864-022-08678-3","journal-title":"BMC Genomics"},{"key":"2388_CR54","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiae140","volume":"100","author":"A Vuillemin","year":"2024","unstructured":"Vuillemin A, Ruiz-Blas F, Yang S, Bartholom\u00e4us A, Henny C, Kallmeyer J (2024) Taxonomic and functional partitioning of chloroflexota populations under ferruginous conditions at and below the sediment-water interface. FEMS Microbiol Ecol 100:fiae140. https:\/\/doi.org\/10.1093\/femsec\/fiae140","journal-title":"FEMS Microbiol Ecol"},{"key":"2388_CR55","doi-asserted-by":"publisher","first-page":"414","DOI":"10.1038\/nmeth.4207","volume":"14","author":"B Wang","year":"2017","unstructured":"Wang B, Zhu J, Pierson E, Ramazzotti D, Batzoglou S (2017) Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning. Nat Methods 14:414\u2013416. https:\/\/doi.org\/10.1038\/nmeth.4207","journal-title":"Nat Methods"},{"key":"2388_CR56","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1038\/s41422-020-0274-0","volume":"30","author":"B Wang","year":"2020","unstructured":"Wang B, Xu W, Yang H (2020) Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex. Cell Res 30:185\u2013187. https:\/\/doi.org\/10.1038\/s41422-020-0274-0","journal-title":"Cell Res"},{"key":"2388_CR57","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2024.1476073","volume":"15","author":"H Wang","year":"2024","unstructured":"Wang H, Li D, Wang J, Wang R, Liang C, Hu Z, Liu J (2024a) Functional assembly of surface microbiota of Ulva fasciata improves nutrient absorption efficiency and growth. Front Microbiol 15:1476073. https:\/\/doi.org\/10.3389\/fmicb.2024.1476073","journal-title":"Front Microbiol"},{"key":"2388_CR58","doi-asserted-by":"publisher","DOI":"10.1016\/j.watres.2024.121572","volume":"256","author":"S Wang","year":"2024","unstructured":"Wang S, Nie W, Gu Q, Wang X, Yang D, Li H, Wang P, Liao W, Huang J, Yuan Q, Zhou S, Ahmad I, Kotaro K, Chen G, Zhu B (2024b) Spread of antibiotic resistance genes in drinking water reservoirs: insights from a deep metagenomic study using a curated database. Water Res 256:121572. https:\/\/doi.org\/10.1016\/j.watres.2024.121572","journal-title":"Water Res"},{"key":"2388_CR59","doi-asserted-by":"publisher","first-page":"6865","DOI":"10.1016\/j.cell.2024.09.023","volume":"187","author":"S Wang","year":"2024","unstructured":"Wang S, Siddique R, Hall MC, Rice PA, Chang L (2024c) Structure of TnsABCD transpososome reveals mechanisms of targeted DNA transposition. Cell 187:6865-6881.e16. https:\/\/doi.org\/10.1016\/j.cell.2024.09.023","journal-title":"Cell"},{"key":"2388_CR60","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2025.125923","volume":"371","author":"X Wang","year":"2025","unstructured":"Wang X, Lin Y, Li S, Wang J, Li X, Zhang D, Duan D, Shao Z (2025) Metagenomic analysis reveals the composition and sources of antibiotic resistance genes in coastal water ecosystems of the Yellow Sea and Yangtze River Delta. Environ Pollut 371:125923. https:\/\/doi.org\/10.1016\/j.envpol.2025.125923","journal-title":"Environ Pollut"},{"key":"2388_CR61","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1111\/jwas.12649","volume":"51","author":"GM Ward","year":"2020","unstructured":"Ward GM, Faisan JP, Cottier\u2010Cook EJ, Gachon C, Hurtado AQ, Lim PE, Matoju I, Msuya FE, Bass D, Brodie J (2020) A review of reported seaweed diseases and pests in aquaculture in Asia. J World Aquacult Soc 51:815\u2013828. https:\/\/doi.org\/10.1111\/jwas.12649","journal-title":"J World Aquacult Soc"},{"key":"2388_CR62","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1011417","volume":"20","author":"ES Wirachman","year":"2024","unstructured":"Wirachman ES, Grossman AD (2024) Transcription termination and antitermination are critical for the fitness and function of the integrative and conjugative element Tn916. PLoS Genet 20:e1011417. https:\/\/doi.org\/10.1371\/journal.pgen.1011417","journal-title":"PLoS Genet"},{"key":"2388_CR63","unstructured":"World Health Organization (WHO) (2023) 10 global health issues to track in 2021. https:\/\/www.who.int\/news-room\/spotlight\/10-global-health-issues-to-track-in-2021, 2020. World Health Organization."},{"key":"2388_CR64","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1007\/s11270-017-3257-0","volume":"228","author":"S Wu","year":"2017","unstructured":"Wu S, He S, Huang J, Gu J, Zhou W, Gao L (2017) Decomposition of emergent aquatic plant (cattail) litter under different conditions and the influence on water quality. Water Air Soil Pollut 228:70. https:\/\/doi.org\/10.1007\/s11270-017-3257-0","journal-title":"Water Air Soil Pollut"},{"key":"2388_CR65","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2024.116963","volume":"208","author":"L Xu","year":"2024","unstructured":"Xu L, Wang Q, Ou X, Zou L, Liu C, Yang Y (2024a) Seaweed burial mitigated the release of organic carbon and nutrients by regulating microbial activity. Mar Pollut Bull 208:116963. https:\/\/doi.org\/10.1016\/j.marpolbul.2024.116963","journal-title":"Mar Pollut Bull"},{"key":"2388_CR66","doi-asserted-by":"publisher","DOI":"10.1080\/19476337.2024.2330674","volume":"22","author":"T Xu","year":"2024","unstructured":"Xu T, Liu J, Wu Q, Hui X, Duan W, Zhang Z, Liao X, Zhao Y (2024b) Progress in combating antibiotic resistance in animal agriculture. CyTA J Food 22:2330674. https:\/\/doi.org\/10.1080\/19476337.2024.2330674","journal-title":"CyTA J Food"},{"key":"2388_CR67","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.wasman.2025.01.003","volume":"194","author":"Y Yang","year":"2025","unstructured":"Yang Y, Chen W, Yin J, Jiang T, Zhao L, Li G, Wang G, Yuan J (2025) Interactions between fungi and bacteria hosts carrying MGEs is dominant for ARGs fate during manure mesophilic composting. Waste Manage (oxford) 194:1\u201312. https:\/\/doi.org\/10.1016\/j.wasman.2025.01.003","journal-title":"Waste Manage (oxford)"},{"key":"2388_CR68","doi-asserted-by":"publisher","first-page":"420","DOI":"10.3390\/toxics11050420","volume":"11","author":"X Yuan","year":"2023","unstructured":"Yuan X, Lv Z, Zhang Z, Han Y, Liu Z, Zhang H (2023a) A review of antibiotics, antibiotic resistant bacteria, and resistance genes in aquaculture: occurrence, contamination, and transmission. Toxics 11:420. https:\/\/doi.org\/10.3390\/toxics11050420","journal-title":"Toxics"},{"key":"2388_CR69","doi-asserted-by":"publisher","first-page":"1897","DOI":"10.1039\/D2FO03119A","volume":"14","author":"Y Yuan","year":"2023","unstructured":"Yuan Y, Zhong S, Deng Z, Li G, Li H (2023b) Impact of particle size on the nutrition release and antioxidant activity of rape, buckwheat and rose bee pollens. Food Funct 14:1897\u20131908. https:\/\/doi.org\/10.1039\/D2FO03119A","journal-title":"Food Funct"},{"key":"2388_CR70","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2024.175970","volume":"953","author":"M Zhang","year":"2024","unstructured":"Zhang M, Liu J, Zhang W, Feng M, Yu X, Ye C (2024) Neglected contributors to the transmission of bacterial antibiotic resistance in drinking water: extracellular antibiotic resistance genes and the natural transformation. Sci Total Environ 953:175970. https:\/\/doi.org\/10.1016\/j.scitotenv.2024.175970","journal-title":"Sci Total Environ"},{"key":"2388_CR71","doi-asserted-by":"publisher","first-page":"729","DOI":"10.26599\/FSHW.2022.9250062","volume":"13","author":"X Zheng","year":"2024","unstructured":"Zheng X, Xu D, Yan J, Qian M, Wang P, Zaeim D, Han J, Qu D (2024) Mobile genetic elements facilitate the transmission of antibiotic resistance genes in multidrug-resistant enterobacteriaceae from duck farms. Food Sci Hum Wellness 13:729\u2013735. https:\/\/doi.org\/10.26599\/FSHW.2022.9250062","journal-title":"Food Sci Hum Wellness"},{"key":"2388_CR72","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2024.122486","volume":"370","author":"W Zhou","year":"2024","unstructured":"Zhou W, Shen X, Xu Z, Yang Q, Jiao M, Li H, Zhang L, Ling J, Liu H, Dong J, Suo A (2024) Specialists regulate microbial network and community assembly in subtropical seagrass sediments under differing land use conditions. J Environ Manage 370:122486. https:\/\/doi.org\/10.1016\/j.jenvman.2024.122486","journal-title":"J Environ Manage"}],"container-title":["Antonie van Leeuwenhoek"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-026-02388-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10482-026-02388-6","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-026-02388-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,3]],"date-time":"2026-08-03T13:46:24Z","timestamp":1785764784000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10482-026-02388-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,28]]},"references-count":72,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2026,8]]}},"alternative-id":["2388"],"URL":"https:\/\/doi.org\/10.1007\/s10482-026-02388-6","relation":{},"ISSN":["0003-6072","1572-9699"],"issn-type":[{"value":"0003-6072","type":"print"},{"value":"1572-9699","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,28]]},"assertion":[{"value":"26 December 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 July 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.","order":1,"name":"Ethics","label":"Competing interest","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article does not contain any studies with human participants or animals performed by any of the authors. The sediment and seaweed samples were collected from mariculture zones and natural environments for environmental microbiological research, which did not require specific ethical approval.","order":2,"name":"Ethics","label":"Ethical approval statement","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"177"}}