{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T02:45:54Z","timestamp":1791859554536,"version":"4.3.4"},"reference-count":35,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Antonie van Leeuwenhoek"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1007\/s10482-026-02433-4","type":"journal-article","created":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T15:45:18Z","timestamp":1790610318000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Predicted shifts in microbial functional potential across the late glacial to holocene transition: a 16S rRNA-based inference from southeastern Arabian Sea sediments"],"prefix":"10.1007","volume":"119","author":[{"given":"Monisha","family":"Balasubramaniyan","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"P. Arun","family":"Karthik","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yoganandan","family":"Veeran","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,28]]},"reference":[{"key":"2433_CR1","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/S0025-3227(01)00179-7","volume":"178","author":"R Bhushan","year":"2001","unstructured":"Bhushan R, Dutta K, Somayajulu BLK (2001) Concentrations and burial fluxes of organic and inorganic carbon on the eastern margins of the Arabian Sea. Mar Geol 178:95\u2013113. https:\/\/doi.org\/10.1016\/S0025-3227(01)00179-7","journal-title":"Mar Geol"},{"key":"2433_CR2","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1007\/978-3-642-55844-3_8","volume-title":"Ocean biogeochemistry: the role of the ocean carbon cycle in global change","author":"PW Boyd","year":"2003","unstructured":"Boyd PW, Doney SC (2003) The impact of climate change and feedback processes on the ocean carbon cycle. Ocean biogeochemistry: the role of the ocean carbon cycle in global change. Springer Berlin Heidelberg, Berlin, Heidelberg, pp 157\u2013193"},{"issue":"7","key":"2433_CR3","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1038\/nmeth.3869","volume":"13","author":"BJ Callahan","year":"2016","unstructured":"Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13(7):581\u2013583","journal-title":"Nat Methods"},{"issue":"9","key":"2433_CR4","doi-asserted-by":"publisher","first-page":"569","DOI":"10.1038\/s41579-019-0222-5","volume":"17","author":"R Cavicchioli","year":"2019","unstructured":"Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS (2019) Scientists\u2019 warning to humanity: microorganisms and climate change. Nat Rev Microbiol 17(9):569\u2013586","journal-title":"Nat Rev Microbiol"},{"issue":"1","key":"2433_CR5","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1177\/0971102320190106","volume":"64","author":"S Chowdhury","year":"2019","unstructured":"Chowdhury S, Bhaumik AK (2019) Palaeoceanographic changes in the Bay of Bengal during the Holocene. J Palaeontol Soc India 64(1):61\u201372","journal-title":"J Palaeontol Soc India"},{"issue":"6","key":"2433_CR8","doi-asserted-by":"publisher","first-page":"685","DOI":"10.1038\/s41587-020-0548-6","volume":"38","author":"GM Douglas","year":"2020","unstructured":"Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI, Langille MG (2020) PICRUSt2 for prediction of metagenome functions. Nat Biotechnol 38(6):685\u2013688","journal-title":"Nat Biotechnol"},{"issue":"1","key":"2433_CR9","doi-asserted-by":"publisher","DOI":"10.1093\/ismeco\/ycae081","volume":"4","author":"NB Dragone","year":"2024","unstructured":"Dragone NB, Hoffert M, Strickland MS, Fierer N (2024) Taxonomic and genomic attributes of oligotrophic soil bacteria. ISME Commun 4(1):ycae081","journal-title":"ISME Commun"},{"issue":"1","key":"2433_CR10","doi-asserted-by":"publisher","DOI":"10.1002\/cpbi.100","volume":"70","author":"M Estaki","year":"2020","unstructured":"Estaki M, Jiang L, Bokulich NA, McDonald D, Gonz\u00e1lez A, Kosciolek T, Martino C, Zhu Q, Birmingham A, V\u00e1zquez\u2010Baeza Y, Dillon MR, Bolyen E, Caporaso JG, Knight R (2020) QIIME 2 enables comprehensive end\u2010to\u2010end analysis of diverse microbiome data and comparative studies with publicly available data. Curr Protoc Bioinformatics 70(1):e100","journal-title":"Curr Protoc Bioinformatics"},{"issue":"6","key":"2433_CR11","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0097338","volume":"9","author":"AJ Ferreira","year":"2014","unstructured":"Ferreira AJ, Siam R, Setubal JC, Moustafa A, Sayed A, Chambergo FS, Ferreira AJS, Dawe AS, Ghazy MA, Sharaf H, Ouf A, Alam I, Abdel-Haleem AM, Lehvaslaiho H, Ramadan E, Antunes A, Stingl U, Archer JAC, Jankovic BR, Sogin M, Bajic VB, El-Dorry H (2014) Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. PLoS ONE 9(6):e97338","journal-title":"PLoS ONE"},{"issue":"4","key":"2433_CR12","doi-asserted-by":"publisher","first-page":"1063","DOI":"10.1093\/bib\/bbx117","volume":"20","author":"MY Galperin","year":"2019","unstructured":"Galperin MY, Kristensen DM, Makarova KS, Wolf YI, Koonin EV (2019) Microbial genome analysis: the COG approach. Brief Bioinform 20(4):1063\u20131070","journal-title":"Brief Bioinform"},{"key":"2433_CR13","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1306\/74D729D7-2B21-11D7-8648000102C1865D","volume":"44","author":"HE Gaudette","year":"1974","unstructured":"Gaudette HE, Flight WR, Toner L, Folger DW (1974) An inexpensive titration method for the determination of organic carbon in recent sediments. J Sediment Res 44:249\u2013253. https:\/\/doi.org\/10.1306\/74D729D7-2B21-11D7-8648000102C1865D","journal-title":"J Sediment Res"},{"key":"2433_CR14","doi-asserted-by":"publisher","first-page":"1257","DOI":"10.1093\/bioinformatics\/btn106","volume":"24","author":"O Gonzalez","year":"2008","unstructured":"Gonzalez O, Zimmer R (2008) Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes. Bioinformatics 24:1257\u20131263. https:\/\/doi.org\/10.1093\/bioinformatics\/btn106","journal-title":"Bioinformatics"},{"issue":"1","key":"2433_CR15","doi-asserted-by":"publisher","DOI":"10.1111\/1751-7915.14390","volume":"17","author":"G Grasso","year":"2024","unstructured":"Grasso G, Bianciotto V, Marmeisse R (2024) Paleomicrobiology: tracking the past microbial life from single species to entire microbial communities. Microb Biotechnol 17(1):e14390","journal-title":"Microb Biotechnol"},{"issue":"1","key":"2433_CR16","first-page":"9","volume":"4","author":"\u00d8 Hammer","year":"2001","unstructured":"Hammer \u00d8, Harper DA, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4(1):9","journal-title":"Palaeontol Electron"},{"issue":"4","key":"2433_CR17","doi-asserted-by":"publisher","first-page":"779","DOI":"10.1017\/RDC.2020.68","volume":"62","author":"TJ Heaton","year":"2020","unstructured":"Heaton TJ, K\u00f6hler P, Butzin M, Bard E, Reimer RW, Austin WE, Austin WEN, Bronk Ramsey C, Grootes PM, Hughen KA, Kromer B, Reimer PJ, Adkins J, Burke A, Cook MS, Olsen J, Skinner LC (2020) Marine20\u2014the marine radiocarbon age calibration curve (0\u201355,000 cal BP). Radiocarbon 62(4):779\u2013820","journal-title":"Radiocarbon"},{"issue":"7589","key":"2433_CR19","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1038\/nature16514","volume":"530","author":"SL Jaccard","year":"2016","unstructured":"Jaccard SL, Galbraith ED, Mart\u00ednez-Garc\u00eda A, Anderson RF (2016) Covariation of deep Southern Ocean oxygenation and atmospheric CO2 through the last ice age. Nature 530(7589):207\u2013210","journal-title":"Nature"},{"issue":"1","key":"2433_CR20","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/j.gpb.2018.09.003","volume":"17","author":"X Jiang","year":"2019","unstructured":"Jiang X, Li X, Yang L, Liu C, Wang Q, Chi W, Zhu H (2019) How microbes shape their communities? A microbial community model based on functional genes. Genomics Proteomics Bioinform 17(1):91\u2013105","journal-title":"Genomics Proteomics Bioinform"},{"issue":"3","key":"2433_CR21","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1002\/palo.20040","volume":"28","author":"PM Kessarkar","year":"2013","unstructured":"Kessarkar PM, Purnachadra Rao V, Naqvi SWA, Karapurkar SG (2013) Variation in the Indian summer monsoon intensity during the B\u00f8lling-\u00c5ller\u00f8d and Holocene. Paleoceanography 28(3):413\u2013425","journal-title":"Paleoceanography"},{"key":"2433_CR23","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.683814","volume":"12","author":"Y Li","year":"2021","unstructured":"Li Y, Wang M, Sun ZZ, Xie BB (2021) Comparative genomic insights into the taxonomic classification, diversity, and secondary metabolic potentials of Kitasatospora, a genus closely related to Streptomyces. Front Microbiol 12:683814","journal-title":"Front Microbiol"},{"key":"2433_CR25","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-018-0420-9","volume":"6","author":"S Louca","year":"2018","unstructured":"Louca S, Doebeli M, Parfrey LW (2018) Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem. Microbiome 6:1\u201312","journal-title":"Microbiome"},{"issue":"1","key":"2433_CR26","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0054326","volume":"8","author":"C Lyra","year":"2013","unstructured":"Lyra C, Sinkko H, Rantanen M, Paulin L, Kotilainen A (2013) Sediment bacterial communities reflect the history of a sea basin. PLoS ONE 8(1):e54326","journal-title":"PLoS ONE"},{"key":"2433_CR43","doi-asserted-by":"publisher","unstructured":"Monisha B, Veeran Y, (2025) Functional Gene Shifts in Marine Sediment Microbiome.\u00a0Zenodo. https:\/\/doi.org\/10.5281\/zenodo.17702055","DOI":"10.5281\/zenodo.17702055"},{"issue":"4","key":"2433_CR27","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1111\/gbi.12338","volume":"17","author":"KD More","year":"2019","unstructured":"More KD, Giosan L, Grice K, Coolen MJ (2019) Holocene paleodepositional changes reflected in the sedimentary microbiome of the Black Sea. Geobiology 17(4):436\u2013448","journal-title":"Geobiology"},{"issue":"3","key":"2433_CR29","first-page":"281","volume":"14","author":"WA Naqvi","year":"1991","unstructured":"Naqvi WA (1991) Geographical extent of denitrification in the Arabian Sea in relation to some physical processes. Oceanol Acta 14(3):281\u2013290","journal-title":"Oceanol Acta"},{"issue":"1","key":"2433_CR30","doi-asserted-by":"publisher","first-page":"6040","DOI":"10.1038\/s41598-017-05590-9","volume":"7","author":"WD Orsi","year":"2017","unstructured":"Orsi WD, Coolen MJ, Wuchter C, He L, More KD, Irigoien X, Coolen MJL, Chust G, Johnson C, Hemingway JD, Lee M, Galy V, Giosan L (2017) Climate oscillations reflected within the microbiome of Arabian Sea sediments. Sci Rep 7(1):6040","journal-title":"Sci Rep"},{"issue":"4","key":"2433_CR31","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1029\/2006GB002852","volume":"21","author":"L Pichevin","year":"2007","unstructured":"Pichevin L, Bard E, Martinez P, Billy I (2007) Evidence of ventilation changes in the Arabian Sea during the late Quaternary: Implication for denitrification and nitrous oxide emission. Glob Biogeochem Cycles 21(4):1\u201312","journal-title":"Glob Biogeochem Cycles"},{"issue":"D1","key":"2433_CR32","doi-asserted-by":"publisher","first-page":"D590","DOI":"10.1093\/nar\/gks1219","volume":"41","author":"C Quast","year":"2012","unstructured":"Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Gl\u00f6ckner FO (2012) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41(D1):D590\u2013D596. https:\/\/doi.org\/10.1093\/nar\/gks1219","journal-title":"Nucleic Acids Res"},{"issue":"13","key":"2433_CR33","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1128\/JB.00849-16","volume":"199","author":"VW Rowlett","year":"2017","unstructured":"Rowlett VW, Mallampalli VK, Karlstaedt A, Dowhan W, Taegtmeyer H, Margolin W, Vitrac H (2017) Impact of membrane phospholipid alterations in Escherichia coli on cellular function and bacterial stress adaptation. J Bacteriol 199(13):10\u20131128","journal-title":"J Bacteriol"},{"key":"2433_CR34","volume-title":"Rapid analysis of silicate, carbonate and phosphate rocks","author":"L Shapiro","year":"1962","unstructured":"Shapiro L, Brannock WW (1962) Rapid analysis of silicate, carbonate and phosphate rocks. US Government Printing Office"},{"key":"2433_CR36","doi-asserted-by":"publisher","DOI":"10.1016\/j.pocean.2022.102742","volume":"201","author":"V Sudheesh","year":"2022","unstructured":"Sudheesh V, Gupta GVM, Reddy Y, Bepari KF, Chari NVHK, Sherin CK, Shaju SS, Ramu CV, Vijayan AK (2022) Oxygen minimum zone along the eastern Arabian Sea: intra-annual variation and dynamics based on ship-borne studies. Prog Oceanogr 201:102742","journal-title":"Prog Oceanogr"},{"issue":"3","key":"2433_CR37","doi-asserted-by":"publisher","first-page":"637","DOI":"10.1029\/2000GB001337","volume":"15","author":"A Suthhof","year":"2001","unstructured":"Suthhof A, Ittekkot V, Gaye-Haake B (2001) Millennial-scale oscillation of denitrification intensity in the Arabian Sea during the late Quaternary and its potential influence on atmospheric N2O and global climate. Glob Biogeochem Cycles 15(3):637\u2013649","journal-title":"Glob Biogeochem Cycles"},{"key":"2433_CR39","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-4-41","volume":"4","author":"RL Tatusov","year":"2003","unstructured":"Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Natale DA (2003) The COG database: an updated version includes eukaryotes. BMC Bioinform 4:1\u201314","journal-title":"BMC Bioinform"},{"issue":"8","key":"2433_CR40","doi-asserted-by":"publisher","first-page":"2475","DOI":"10.5194\/bg-13-2475-2016","volume":"13","author":"A Vuillemin","year":"2016","unstructured":"Vuillemin A, Ariztegui D, Leavitt PR, Bunting L, PASADO Science Team (2016) Recording of climate and diagenesis through sedimentary DNA and fossil pigments at Laguna Potrok Aike, Argentina. Biogeosciences 13(8):2475\u20132492","journal-title":"Biogeosciences"},{"key":"2433_CR41","volume-title":"Oceanographic atlas of the International Indian Ocean Expedition","author":"K Wyrtki","year":"1971","unstructured":"Wyrtki K (1971) Oceanographic atlas of the International Indian Ocean Expedition. National Science Foundation, Washington DC"},{"key":"2433_CR42","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1007\/978-94-007-6016-5_2","volume-title":"Climate change and island and coastal vulnerability","author":"V Yoganandan","year":"2013","unstructured":"Yoganandan V, Krishnaiah C, Selvaraj K, Prasad GR, Dutta K (2013) Monsoonal fluctuations vs marine productivity during past 10,000 years\u2014a study based on sediment core retrieved from southeastern Arabian Sea. Climate change and island and coastal vulnerability. Springer Netherlands, Dordrecht, pp 21\u201330"}],"container-title":["Antonie van Leeuwenhoek"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-026-02433-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10482-026-02433-4","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10482-026-02433-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T02:02:15Z","timestamp":1791856935000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10482-026-02433-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,28]]},"references-count":35,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["2433"],"URL":"https:\/\/doi.org\/10.1007\/s10482-026-02433-4","relation":{},"ISSN":["0003-6072","1572-9699"],"issn-type":[{"value":"0003-6072","type":"print"},{"value":"1572-9699","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,28]]},"assertion":[{"value":"4 May 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"24 September 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 September 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Not applicable.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"221"}}