{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,4]],"date-time":"2026-10-04T23:23:51Z","timestamp":1791156231930,"version":"4.1.0"},"reference-count":72,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2015,2,14]],"date-time":"2015-02-14T00:00:00Z","timestamp":1423872000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Genetica"],"published-print":{"date-parts":[[2015,6]]},"DOI":"10.1007\/s10709-015-9825-6","type":"journal-article","created":{"date-parts":[[2015,2,17]],"date-time":"2015-02-17T10:09:24Z","timestamp":1424167764000},"page":"287-298","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["The genomic proliferation of transposable elements in colonizing populations: Schistosoma mansoni in the new world"],"prefix":"10.1007","volume":"143","author":[{"given":"Bhagya K.","family":"Wijayawardena","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J. Andrew","family":"DeWoody","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dennis J.","family":"Minchella","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2015,2,14]]},"reference":[{"key":"9825_CR1","doi-asserted-by":"crossref","first-page":"1504","DOI":"10.1016\/j.jprot.2011.02.032","volume":"74","author":"TM Batista","year":"2011","unstructured":"Batista TM, Marques JT (2011) RNAi pathways in parasitic protists and worms. J Proteomics 74:1504\u20131514","journal-title":"J Proteomics"},{"key":"9825_CR2","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.1645\/GE-3186RN","volume":"89","author":"CJ Bayne","year":"2003","unstructured":"Bayne CJ, Grevelding CG (2003) Cloning of Schistosoma mansoni sporocysts in vitro and detection of genetic heterogeneity among individuals within clones. J Parasitol 89:1056\u20131060","journal-title":"J Parasitol"},{"key":"9825_CR3","doi-asserted-by":"crossref","first-page":"352","DOI":"10.1038\/nature08160","volume":"460","author":"M Berriman","year":"2009","unstructured":"Berriman M, Haas BJ, LoVerde PJ, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream M, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM (2009) The genome of the blood fluke Schistosoma mansoni. Nature 460:352\u2013358","journal-title":"Nature"},{"key":"9825_CR4","doi-asserted-by":"crossref","first-page":"170","DOI":"10.1136\/bmj.310.6973.170","volume":"310","author":"JM Bland","year":"1995","unstructured":"Bland JM, Altman DG (1995) Multiple significance tests: the Bonferroni method. BMJ 310:170","journal-title":"BMJ"},{"key":"9825_CR5","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1645\/GE-2463.1","volume":"96","author":"WA Blank","year":"2010","unstructured":"Blank WA, Test MR, Liu SF, Lewis FA, Blanton RE (2010) Long-term genetic stability and population dynamics of laboratory strains of Schistosoma mansoni. J Parasitol 96:900\u2013907","journal-title":"J Parasitol"},{"key":"9825_CR6","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1016\/j.tig.2010.10.003","volume":"27","author":"JP Blumenstiel","year":"2011","unstructured":"Blumenstiel JP (2011) Evolutionary dynamics of transposable elements in a small RNA world. Trends Genet 27:23\u201331","journal-title":"Trends Genet"},{"key":"9825_CR7","doi-asserted-by":"crossref","first-page":"1984","DOI":"10.1101\/gr.1191603","volume":"13","author":"NJ Bowen","year":"2003","unstructured":"Bowen NJ, Jordan IK, Epstein JA, Wood V, Levin HL (2003) Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe. Genome Res 13:1984\u20131997","journal-title":"Genome Res"},{"issue":"3","key":"9825_CR8","doi-asserted-by":"crossref","first-page":"e1961","DOI":"10.1371\/journal.pntd.0001961","volume":"7","author":"PJ Brindley","year":"2013","unstructured":"Brindley PJ, Hotez PJ (2013) Break out: urogenital schistosomiasis and Schistosoma haematobium infection in the post-genomic era. PLoS Negl Trop Dis 7(3):e1961. doi: 10.1371\/journal.pntd.0001961","journal-title":"PLoS Negl Trop Dis"},{"key":"9825_CR9","volume-title":"CDC health information for international travel 2014","author":"GW Brunette","year":"2014","unstructured":"Brunette GW (2014) CDC health information for international travel 2014. Oxford University Press, Oxford"},{"key":"9825_CR10","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1046\/j.1365-2540.2000.00751.x","volume":"85","author":"P Capy","year":"2000","unstructured":"Capy P, Gasperi G, Biemont C, Bazin C (2000) Stress and transposable elements: co-evolution or useful parasites? Heredity 85:101\u2013106","journal-title":"Heredity"},{"key":"9825_CR11","doi-asserted-by":"crossref","first-page":"1503","DOI":"10.1111\/mec.12170","volume":"22","author":"E Casacuberta","year":"2013","unstructured":"Casacuberta E, Gonzalez J (2013) The impact of transposable elements in environmental adaptation. Mol Ecol 22:1503\u20131517","journal-title":"Mol Ecol"},{"key":"9825_CR12","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1186\/1297-9686-25-2-121","volume":"25","author":"F Chakrani","year":"1993","unstructured":"Chakrani F, Capy P, David JR (1993) Developmental temperature and somatic excision rate of mariner transposable element in three natural populations of Drosophila simulans. Genet Sel Evol 25:121\u2013132","journal-title":"Genet Sel Evol"},{"key":"9825_CR13","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1007\/s00436-010-1946-3","volume":"107","author":"J Chen","year":"2010","unstructured":"Chen J, Yang Y, Guo S, Peng J, Liu Z, Li J, Lin J, Cheng G (2010) Molecular cloning and expression profiles of Argonaute proteins in Schistosoma japonicum. Parasitol Res 107:889\u2013899","journal-title":"Parasitol Res"},{"key":"9825_CR14","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/S0001-706X(00)00122-4","volume":"77","author":"L Chitsulo","year":"2000","unstructured":"Chitsulo L, Engels D, Montresor A, Savioli L (2000) The global status of schistosomiasis and its control. Acta Trop 77:41\u201351","journal-title":"Acta Trop"},{"key":"9825_CR15","doi-asserted-by":"crossref","first-page":"397","DOI":"10.2307\/3285768","volume":"85","author":"DWT Crompton","year":"1999","unstructured":"Crompton DWT (1999) How much human helminthiasis is there in the world? J Parasitol 85:397\u2013403","journal-title":"J Parasitol"},{"key":"9825_CR16","doi-asserted-by":"crossref","first-page":"2225","DOI":"10.1093\/oxfordjournals.molbev.a003769","volume":"18","author":"RJ DeJong","year":"2001","unstructured":"DeJong RJ, Morgan JAT, Paraense WL, Pointier JP, Amarista M, Ayeh-Kumi PF, Babiker A, Barbosa CS, Br\u00e9mond P, Pedro Canese A, de Souza CP, Dominguez C, File S, Gutierrez A, Incani RN, Kawano T, Kazibwe F, Kpikpi J, Lwambo NJ, Mimpfoundi R, Njiokou F, No\u00ebl Poda J, Sene M, Vel\u00e1squez LE, Yong M, Adema CM, Hofkin BV, Mkoji GM, Loker ES (2001) Evolutionary relationships and biogeography of Biomphalaria (Gastropoda: Planorbidae) with implications regarding its role as host of the human bloodfluke, Schistosoma mansoni. Mol Biol Evol 18:2225\u20132239","journal-title":"Mol Biol Evol"},{"key":"9825_CR17","doi-asserted-by":"crossref","first-page":"3041","DOI":"10.1046\/j.1365-294X.2003.01977.x","volume":"12","author":"RJ DeJong","year":"2003","unstructured":"DeJong RJ, Morgan JAT, Wilson WD, Al-Jaser MH, Appleton CC, Coulibaly G, D\u2019Andrea PS, Doenhoff MJ, Haas W, Idris MA, Magalh\u00e3es LA, Mon\u00e9 H, Mouahid G, Mubila L, Pointier JP, Webster JP, Zanotti-Magalh\u00e3es EM, Paraense WL, Mkoji GM, Loker ES (2003) Phylogeography of Biomphalaria glabrata and B. pfeifferi, important intermediate hosts of Schistosoma mansoni in the New and Old World tropics. Mol Ecol 12:3041\u20133056","journal-title":"Mol Ecol"},{"key":"9825_CR18","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1128\/JVI.78.6.2967-2978.2004","volume":"78","author":"R DeMarco","year":"2004","unstructured":"DeMarco R, Machado AA, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira AMBN, Wilson RA, Menck CFM, Setubal JC, Dias-Neto E, Leite LCC, Verjovski-Almeida S (2004) Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni. J Virol 78:967\u20132978","journal-title":"J Virol"},{"key":"9825_CR19","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1186\/1471-2148-6-89","volume":"6","author":"R DeMarco","year":"2006","unstructured":"DeMarco R, Venancio TM, Verjovski-Almeida S (2006) SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily. BMC Evol Biol 6:89\u2013102","journal-title":"BMC Evol Biol"},{"key":"9825_CR20","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/0166-6851(93)90133-I","volume":"60","author":"L Despr\u00e8s","year":"1993","unstructured":"Despr\u00e8s L, Imbert-Establet D, Monnerot M (1993) Molecular characterization of mitochondrial-DNA provides evidence for the recent introduction of Schistosoma mansoni into America. Mol Biochem Parasitol 60:221\u2013230","journal-title":"Mol Biochem Parasitol"},{"key":"9825_CR21","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1111\/j.1755-0998.2010.02892.x","volume":"11","author":"JM Doyle","year":"2011","unstructured":"Doyle JM, McCormick CR, DeWoody JA (2011) The quantification of spermatozoa by real-time quantitative PCR, spectrophotometry, and spermatophore cap size. Mol Ecol Res 11:101\u2013106","journal-title":"Mol Ecol Res"},{"key":"9825_CR22","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1016\/0092-8674(90)90016-8","volume":"62","author":"WR Engels","year":"1990","unstructured":"Engels WR, Johnson-Schlitz DM, Eggleston WB, Sved J (1990) High-frequency P element loss in Drosophila is homolog dependent. Cell 62:515\u2013525","journal-title":"Cell"},{"key":"9825_CR23","doi-asserted-by":"crossref","first-page":"1769","DOI":"10.1093\/molbev\/msh188","volume":"21","author":"C Feschotte","year":"2004","unstructured":"Feschotte C (2004) Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences. Mol Biol Evol 21:1769\u20131780","journal-title":"Mol Biol Evol"},{"key":"9825_CR24","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1093\/genetics\/163.2.747","volume":"163","author":"C Feschotte","year":"2003","unstructured":"Feschotte C, Swamy L, Wessler SR (2003) Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with Stowaway MITEs. Genetics 163:747\u2013758","journal-title":"Genetics"},{"key":"9825_CR25","doi-asserted-by":"crossref","first-page":"264","DOI":"10.1017\/S0031182000084092","volume":"41","author":"VS Files","year":"1951","unstructured":"Files VS (1951) A study of the vector-parasite relationships in Schistosoma mansoni. Parasitology 41:264\u2013269","journal-title":"Parasitology"},{"key":"9825_CR26","doi-asserted-by":"crossref","first-page":"406","DOI":"10.4269\/ajtmh.1981.30.406","volume":"30","author":"M Fletcher","year":"1981","unstructured":"Fletcher M, Loverde PT, Woodruff DS (1981) Genetic variation in Schistosoma mansoni enzyme polymorphisms in poulations from Africa, southwest Asia, South America, and the West Indies. Am J Trop Med Hyg 30:406\u2013421","journal-title":"Am J Trop Med Hyg"},{"key":"9825_CR27","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1534\/genetics.106.064378","volume":"175","author":"MP Garc\u00eda Guerreiro","year":"2007","unstructured":"Garc\u00eda Guerreiro MP, Fontdevila A (2007) The evolutionary history of Drosophila buzzatii. XXXVI. Molecular structural analysis of Osvaldo retrotransposon insertions in colonizing populations unveils drift effects in founder events. Genetics 175:301\u2013310","journal-title":"Genetics"},{"key":"9825_CR28","doi-asserted-by":"crossref","first-page":"234","DOI":"10.1186\/1471-2148-8-234","volume":"8","author":"MP Garc\u00eda Guerreiro","year":"2008","unstructured":"Garc\u00eda Guerreiro MP, Ch\u00e1vez-Sandoval BE, Balany\u00e0 J, Serra L, Fontdevila A (2008) Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura. BMC Evol Biol 8:234. doi: 10.1186\/1471-2148-8-234","journal-title":"BMC Evol Biol"},{"key":"9825_CR29","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1093\/genetics\/128.2.303","volume":"128","author":"D Garza","year":"1991","unstructured":"Garza D, Medhora M, Koga A, Hartl DL (1991) Introduction of the transposable element mariner into the germline of Drosophila melanogaster. Genetics 128:303\u2013310","journal-title":"Genetics"},{"key":"9825_CR30","doi-asserted-by":"crossref","first-page":"424","DOI":"10.1038\/ncomms1433","volume":"2","author":"KK Geyer","year":"2011","unstructured":"Geyer KK, Rodr\u00edguez L\u00f3pez CM, Chalmers IW, Munshi SE, Truscott M, Heald J, Wilkinson MJ, Hoffmann KF (2011) Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni. Nat Commun 2:424. doi: 10.1038\/ncomms1433","journal-title":"Nat Commun"},{"key":"9825_CR31","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1016\/j.parint.2008.10.002","volume":"58","author":"MS Gomes","year":"2009","unstructured":"Gomes MS, Cabral FJ, Jannotti-Passos LK, Carvalho O, Rodrigues V, Baba EH, Renata GS (2009) Preliminary analysis of miRNA pathway in Schistosoma mansoni. Parasitol Int 58:61\u201368","journal-title":"Parasitol Int"},{"key":"9825_CR32","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1016\/0166-6851(94)00058-U","volume":"71","author":"CG Grevelding","year":"1995","unstructured":"Grevelding CG (1995) The female-specific W1 sequence of the Puerto Rican strain of Schistosoma mansoni. Mol Biochem Parasitol 71:269\u2013272","journal-title":"Mol Biochem Parasitol"},{"key":"9825_CR33","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1186\/1471-2164-11-55","volume":"11","author":"L Hao","year":"2010","unstructured":"Hao L, Cai P, Jiang N, Wang H, Chen Q (2010) Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum. BMC Genom 11:55. doi: 10.1186\/1471-2164-11-55","journal-title":"BMC Genom"},{"key":"9825_CR34","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1186\/1745-6150-6-19","volume":"6","author":"A Hua-Van","year":"2011","unstructured":"Hua-Van A, Le Rouzic A, Boutin TS, Filee J, Capy P (2011) The struggle for life of the genome\u2019s selfish architects. Biol Direct 6:19. doi: 10.1186\/1745-6150-6-19","journal-title":"Biol Direct"},{"key":"9825_CR35","doi-asserted-by":"crossref","first-page":"1292","DOI":"10.1111\/j.1462-2920.2008.01857.x","volume":"11","author":"JA Huber","year":"2009","unstructured":"Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Welch DBM (2009) Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ Microbiol 11:1292\u20131302","journal-title":"Environ Microbiol"},{"key":"9825_CR36","doi-asserted-by":"crossref","first-page":"346","DOI":"10.1152\/physiolgenomics.00260.2004","volume":"22","author":"RA Jolly","year":"2005","unstructured":"Jolly RA, Goldstein KM, Wei T, Gao H, Chen P, Huang S, Colet J, Ryan TP, Thomas CE, Estrem ST (2005) Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants. Physiol Genomics 22:346\u2013355","journal-title":"Physiol Genomics"},{"key":"9825_CR37","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1023\/A:1016072014259","volume":"115","author":"M Kidwell","year":"2002","unstructured":"Kidwell M (2002) Transposable elements and the evolution of genome size in eukaryotes. Genetica 115:49\u201363","journal-title":"Genetica"},{"key":"9825_CR38","doi-asserted-by":"crossref","first-page":"833","DOI":"10.1007\/s00436-011-2562-6","volume":"110","author":"A Korsunenko","year":"2012","unstructured":"Korsunenko A, Chrisanfova G, Lopatkin A, Beer SA, Voronin M, Ryskov AP, Semyenova SK (2012) Genetic differentiation of cercariae infrapopulations of the avian schistosome Trichobilharzia szidati based on RAPD markers and mitochondrial cox1 gene. Parasitol Res 110:833\u2013841","journal-title":"Parasitol Res"},{"key":"9825_CR39","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1016\/j.molbiopara.2007.03.006","volume":"153","author":"G Krautz-Peterson","year":"2007","unstructured":"Krautz-Peterson G, Radwanska M, Ndegwa D, Shoemaker CB, Skelly PJ (2007) Optimizing gene suppression in schistosomes using RNA interference. Mol Biochem Parasitol 153:194\u2013202","journal-title":"Mol Biochem Parasitol"},{"key":"9825_CR40","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/S0001-706X(00)00124-8","volume":"77","author":"JR Lambertucci","year":"2000","unstructured":"Lambertucci JR, Serufo JC, Gerspacher-Lara R, Rayes AA, Teixeira R, Nobre V, Antunes CM (2000) Schistosoma mansoni: assessment of morbidity before and after control. Acta Trop 77:101\u2013109","journal-title":"Acta Trop"},{"key":"9825_CR41","doi-asserted-by":"crossref","first-page":"813","DOI":"10.2307\/3281829","volume":"72","author":"FA Lewis","year":"1986","unstructured":"Lewis FA, Stirewalt MA, Souza CP, Gazzinelli G (1986) Large-scale laboratory maintenance of Schistosoma mansoni, with observations on three schistosome\/snail host combinations. J Parasitol 72:813\u2013829","journal-title":"J Parasitol"},{"key":"9825_CR42","doi-asserted-by":"crossref","first-page":"13965","DOI":"10.1073\/pnas.0804671105","volume":"105","author":"S Lockton","year":"2008","unstructured":"Lockton S, Ross-Ibarra J, Gaut BS (2008) Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proc Natl Acad Sci USA 105:13965\u201313970","journal-title":"Proc Natl Acad Sci USA"},{"key":"9825_CR43","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1017\/S0031182002002792","volume":"126","author":"AE Lockyer","year":"2003","unstructured":"Lockyer AE, Olson PD, Ostergaard P, Rollins D, Johnston DA, Attwood SW, Horak P, Snyder SD, Le TH, Agatsuma T, McManus DP, Carmichael AC, Naem S, Littlewood DT (2003) The phylogeny of the Schistosomatidae based on three genes with emphasis on the interrelationships of Schistosoma Weinland, 1858. Parasitology 126:203\u2013224","journal-title":"Parasitology"},{"key":"9825_CR44","doi-asserted-by":"crossref","first-page":"1401","DOI":"10.1126\/science.1089370","volume":"302","author":"M Lynch","year":"2003","unstructured":"Lynch M, Conery JS (2003) The origins of genome complexity. Science 302:1401\u20131404","journal-title":"Science"},{"key":"9825_CR45","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1101\/gr.161034.113","volume":"24","author":"GK Marinov","year":"2014","unstructured":"Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ (2014) From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Res 24:496\u2013510","journal-title":"Genome Res"},{"key":"9825_CR46","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1016\/j.molbiopara.2009.04.007","volume":"167","author":"SM Messerli","year":"2006","unstructured":"Messerli SM, Kasinathan RS, Morgan W, Spranger S, Greenberg RM (2006) Schistosoma mansoni P-glycoprotein levels increase in response to praziquantel exposure and correlate with reduced praziquantel susceptibility. Mol Biochem Parasitol 167:54\u201359","journal-title":"Mol Biochem Parasitol"},{"key":"9825_CR47","doi-asserted-by":"crossref","first-page":"3889","DOI":"10.1111\/j.1365-294X.2005.02709.x","volume":"14","author":"JA Morgan","year":"2005","unstructured":"Morgan JA, Dejong RJ, Adeoye GO, Ansa ED, Barbosa CS, Bremond P, Cesari IM, Charbonnel N, Correa LR, Coulibaly G, D\u2019Andrea PS, De Souza CP, Doenhoff MJ, File S, Idris MA, Incani RN, Jarne P, Karanja DM, Kazibwe F, Kpikpi J, Lwambo NJ, Mabaye A, Magalhaes LA, Makundi A, Mone H, Mouahid G, Muchemi GM, Mungai BN, Sene M, Southgate V, Tchuente LA, Theron A, Yousif F, Zanotti-Magalhaes EM, Mkoji GM, Loker ES (2005) Origin and diversification of the human parasite Schistosoma mansoni. Mol Ecol 14:3889\u20133902","journal-title":"Mol Ecol"},{"key":"9825_CR48","doi-asserted-by":"crossref","first-page":"1130","DOI":"10.1038\/nature08479","volume":"461","author":"K Naito","year":"2009","unstructured":"Naito K, Zhang F, Tsukiyama T, Saito H, Hancock CN, Richardson AO, Okumoto Y, Tanisaka T, Wessler SR (2009) Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 461:1130\u20131134","journal-title":"Nature"},{"key":"9825_CR49","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1023\/A:1003957323876","volume":"107","author":"SV Nuzhdin","year":"1999","unstructured":"Nuzhdin SV (1999) Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107:129\u2013137","journal-title":"Genetica"},{"key":"9825_CR50","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1002\/bies.200800219","volume":"31","author":"KR Oliver","year":"2009","unstructured":"Oliver KR, Greene WK (2009) Transposable elements: powerful facilitators of evolution. BioEssays 31:703\u2013714","journal-title":"BioEssays"},{"key":"9825_CR51","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1093\/jhered\/esp065","volume":"100","author":"EJ Pritham","year":"2009","unstructured":"Pritham EJ (2009) Transposable elements and factors influencing their success in eukaryotes. J Hered 100:648\u2013655","journal-title":"J Hered"},{"key":"9825_CR52","doi-asserted-by":"crossref","first-page":"e1455","DOI":"10.1371\/journal.pntd.0001455","volume":"6","author":"AV Protasio","year":"2012","unstructured":"Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJC, Clark RC, Davidson C, Gary PG, Dillon S, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M (2012) A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. PLoS Negl Trop Dis 6:e1455. doi: 10.1371\/journal.pntd.0001455","journal-title":"PLoS Negl Trop Dis"},{"key":"9825_CR53","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.gene.2010.01.003","volume":"454","author":"R Rebollo","year":"2010","unstructured":"Rebollo R, Horard B, Hubert B, Vieira C (2010) Jumping genes and epigenetics: towards new species. Gene 454:1\u20137","journal-title":"Gene"},{"issue":"7","key":"9825_CR54","doi-asserted-by":"crossref","first-page":"e1002820","DOI":"10.1371\/journal.ppat.1002820","volume":"8","author":"G Rinaldi","year":"2012","unstructured":"Rinaldi G, Eckert SE, Tsai IJ, Suttiprapa S, Kines KJ et al (2012) Germline transgenesis and insertional mutagenesis in Schistosoma mansoni mediated by murine leukemia virus. PLoS Pathog 8(7):e1002820. doi: 10.1371\/journal.ppat.1002820","journal-title":"PLoS Pathog"},{"key":"9825_CR55","doi-asserted-by":"crossref","first-page":"1723","DOI":"10.1093\/genetics\/157.4.1723","volume":"157","author":"F Ros","year":"2001","unstructured":"Ros F, Kunze R (2001) Regulation of activator\/dissociation transposition by replication and DNA methylation. Genetics 157:1723\u20131733","journal-title":"Genetics"},{"key":"9825_CR56","volume-title":"Molecular cloning: a laboratory manual","author":"J Sambrook","year":"2001","unstructured":"Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York"},{"key":"9825_CR57","doi-asserted-by":"crossref","first-page":"1626","DOI":"10.1073\/pnas.0303793101","volume":"101","author":"TA Schlenke","year":"2004","unstructured":"Schlenke TA, Begun DJ (2004) Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci USA 101:1626\u20131631","journal-title":"Proc Natl Acad Sci USA"},{"key":"9825_CR58","doi-asserted-by":"crossref","first-page":"1101","DOI":"10.1038\/nprot.2008.73","volume":"3","author":"TD Schmittgen","year":"2008","unstructured":"Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3:1101\u20131108","journal-title":"Nat Protoc"},{"key":"9825_CR59","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1134\/S0012496607030192","volume":"414","author":"SK Semyenova","year":"2007","unstructured":"Semyenova SK, Khrisanfova GG, Korsunenko AV, Voronin MV, Beer SV, Vodyanitskaya SV, Serbina EA, Yurlova NI, Ryskov AP (2007) Multilocus variation in cercariae, parthenogenetic progeny of different species of the class Trematoda. Dokl Biol Sci 414:235\u2013238","journal-title":"Dokl Biol Sci"},{"key":"9825_CR60","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1038\/nrg2072","volume":"8","author":"RK Slotkin","year":"2007","unstructured":"Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8:272\u2013285","journal-title":"Nat Rev Genet"},{"key":"9825_CR61","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1645\/0022-3395(2000)086[0283:ERATSP]2.0.CO;2","volume":"86","author":"SD Snyder","year":"2000","unstructured":"Snyder SD, Loker ES (2000) Evolutionary relationships among the Schistosomatidae (Platyhelminthes: Digenea) and an Asian origin for Schistosoma. J Parasitol 86:283\u2013288","journal-title":"J Parasitol"},{"key":"9825_CR62","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1016\/j.ijpara.2003.11.026","volume":"34","author":"RA Stohler","year":"2004","unstructured":"Stohler RA, Curtis J, Minchella DJ (2004) A comparison of microsatellite polymorphism and heterozygosity among field and laboratory populations of Schistosoma mansoni. Int J Parasitol 34:595\u2013601","journal-title":"Int J Parasitol"},{"key":"9825_CR63","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1016\/j.ijpara.2007.07.011","volume":"38","author":"EA Thiele","year":"2008","unstructured":"Thiele EA, Sorenson RE, Gazzinelli A, Minchella DJ (2008) Genetic diversity and population structuring of Schistosoma mansoni in a Brazilian village. Int J Parasitol 38:389\u2013399","journal-title":"Int J Parasitol"},{"key":"9825_CR64","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1016\/j.pt.2010.04.001","volume":"26","author":"M Thomas","year":"2010","unstructured":"Thomas M, Macias C, Alonso C, Lopez MC (2010) The Biology and Evolution of transposable elements in parasites. Trends Parasitol 26:350\u2013362","journal-title":"Trends Parasitol"},{"key":"9825_CR65","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/gbe\/evt133","volume":"5","author":"M Tollis","year":"2013","unstructured":"Tollis M, Boissinot S (2013) Biology Lizards and LINEs: selection and demography affect the fate of L1 retrotransposons in the genome of the green anole (Anolis carolinensis). Genome Biol Evol 5:1754\u20131768","journal-title":"Genome Biol Evol"},{"key":"9825_CR66","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1016\/j.ijpara.2009.11.013","volume":"40","author":"TM Venancio","year":"2010","unstructured":"Venancio TM, Wilson RA, Verjovski-Almeida S, DeMarco R (2010) Burst of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni. Int J Parasitol 40:743\u2013749","journal-title":"Int J Parasitol"},{"key":"9825_CR67","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1023\/B:GENE.0000017635.34955.b5","volume":"120","author":"C Vieira","year":"2004","unstructured":"Vieira C, Bi\u00e9mont C (2004) Transposable element dynamics in two sibling species: Drosophila melanogaster and Drosophila simulans. Genetica 120:115\u2013123","journal-title":"Genetica"},{"key":"9825_CR72","doi-asserted-by":"crossref","unstructured":"Visser ME (2008) Keeping up with a warming world; assessing the rate of adaptation to climate change. Proc Biol Sci 275:649\u2013659","DOI":"10.1098\/rspb.2007.0997"},{"key":"9825_CR68","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1038\/ng.1065","volume":"44","author":"ND Young","year":"2012","unstructured":"Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollins D, Rinaldi G, Brindley P, Yang H, Yang J, Wang J, Gasser RB (2012) Whole-genome sequence of Schistosoma haematobium. Nat Genet 44:221\u2013225","journal-title":"Nat Genet"},{"key":"9825_CR69","doi-asserted-by":"crossref","first-page":"715","DOI":"10.1002\/bies.200900026","volume":"31","author":"DW Zeh","year":"2009","unstructured":"Zeh DW, Zeh JA, Ishida Y (2009) Transposable elements and an epigenetic basis for punctuated equilibria. BioEssays 31:715\u2013726","journal-title":"BioEssays"},{"key":"9825_CR70","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1038\/nature08140","volume":"460","author":"Y Zhou","year":"2009","unstructured":"Zhou Y, Zheng H, Chen Y, Zhang L, Wang K, Guo J, Huang Z, Zhang B, Huang W, Jin K, Dou T, Hasegawa M, Wang L, Zhang Y, Zhou J, Tao L, Cao Z, Li Y, Vinar T, Brejova B, Brown D, Li M, Miller DJ, Blair D, Zhong Y, Chen Z, Liu F, Hu W, Wang Z, Zhang Q, Song H, Chen S, Xu X, Xu B, Ju C, Huang Y, Brindley PJ, McManus DP, Feng Z, Han Z, Lu G, Ren S, WangY GuW, Kang H, Chen J, Chen X, Chen S, Wang L, Yan J, Wang B, Lv X, Jin L, Wang B, Pu S, Zhang X, Zhang W, Hu Q, Zhu G, Wang J, Yu J, Wang J, Yang H, Ning Z, Beriman M, Wei C, Ruan Y, Zhao G, Wang S (2009) The Schistosoma japonicum genome reveals features of host\u2013parasite interplay. Nature 460:345\u2013351","journal-title":"Nature"},{"key":"9825_CR71","doi-asserted-by":"crossref","first-page":"892","DOI":"10.2144\/01304pf02","volume":"30","author":"YY Zhu","year":"2001","unstructured":"Zhu YY, Machleder EM, Chenchik A, Li R, Siebert PD (2001) Reverse transcriptase template switching: a SMART\u2122 approach for full-length cDNA library construction. Biotechniques 30:892\u2013897","journal-title":"Biotechniques"}],"container-title":["Genetica"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10709-015-9825-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10709-015-9825-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10709-015-9825-6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,29]],"date-time":"2022-04-29T22:34:32Z","timestamp":1651271672000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10709-015-9825-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,2,14]]},"references-count":72,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2015,6]]}},"alternative-id":["9825"],"URL":"https:\/\/doi.org\/10.1007\/s10709-015-9825-6","relation":{},"ISSN":["0016-6707","1573-6857"],"issn-type":[{"value":"0016-6707","type":"print"},{"value":"1573-6857","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,2,14]]}}}