{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,17]],"date-time":"2026-03-17T00:20:37Z","timestamp":1773706837274,"version":"3.50.1"},"reference-count":37,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T00:00:00Z","timestamp":1766102400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T00:00:00Z","timestamp":1766102400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Biol Rep"],"published-print":{"date-parts":[[2026,12]]},"DOI":"10.1007\/s11033-025-11377-3","type":"journal-article","created":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T14:08:59Z","timestamp":1766153339000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["LC-MS\/MS-based phenolic profiling and IRAP-PCR analysis reveal biochemical and genomic responses of flax (Linum usitatissimum L.) to salt stress"],"prefix":"10.1007","volume":"53","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6622-5083","authenticated-orcid":false,"given":"Yunus Emre","family":"Arvas","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2025,12,19]]},"reference":[{"key":"11377_CR1","unstructured":"FAO. Food Agriculture Organization of the United Nations (2017) The future of food and agriculture: trends and challenges. Fao"},{"key":"11377_CR2","doi-asserted-by":"publisher","unstructured":"Munns R, Gilliham M (2015) Salinity tolerance of crops\u2013what is the cost? New phytologist. 208(3):668\u2013673. https:\/\/doi.org\/10.1111\/nph.13519","DOI":"10.1111\/nph.13519"},{"issue":"1","key":"11377_CR3","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1111\/sum.12772","volume":"38","author":"A Singh","year":"2022","unstructured":"Singh A (2022) Soil salinity: A global threat to sustainable development. Soil Use Manag 38(1):39\u201367. https:\/\/doi.org\/10.1111\/sum.12772","journal-title":"Soil Use Manag"},{"issue":"1","key":"11377_CR4","doi-asserted-by":"publisher","first-page":"190","DOI":"10.1007\/s42729-023-01566-z","volume":"24","author":"G Eghlima","year":"2024","unstructured":"Eghlima G, Mohammadi M, Mirjalili MH, Ghorbanpour M (2024) Exploring the potential impact of Biochar amendments in promoting redox reactions, agro-morphological, and phytochemical characteristics in satureja khuzistanica Jamzad under salt stress. J Soil Sci Plant Nutr 24(1):190\u2013202. https:\/\/doi.org\/10.1007\/s42729-023-01566-z","journal-title":"J Soil Sci Plant Nutr"},{"issue":"1","key":"11377_CR5","first-page":"34","volume":"17","author":"H Safdar","year":"2019","unstructured":"Safdar H, Amin A, Shafiq Y, Ali A, Yasin R, Shoukat A et al (2019) A review: impact of salinity on plant growth. Nat Sci 17(1):34\u201340","journal-title":"Nat Sci"},{"key":"11377_CR6","doi-asserted-by":"publisher","first-page":"370","DOI":"10.1016\/j.sajb.2023.09.011","volume":"162","author":"S Raza","year":"2023","unstructured":"Raza S, Zia-ur-Rehman M, Alghamdi SA, Alghanem SMS, Usman M, Ahmed R et al (2023) Effects of zinc-enriched amino acids on rice plants (Oryza sativa L.) for adaptation in saline-sodic soil conditions: Growth, nutrient uptake and biofortification of zinc. South Afr J Bot 162:370\u2013380. https:\/\/doi.org\/10.1016\/j.sajb.2023.09.011","journal-title":"South Afr J Bot"},{"key":"11377_CR7","doi-asserted-by":"publisher","first-page":"109698","DOI":"10.1016\/j.plaphy.2025.109698","volume":"222","author":"G Eghlima","year":"2025","unstructured":"Eghlima G, Mohammadi M, Aghamir F (2025) Biochar application improved soil properties, growth performances, essential oil, and Rosmarinic acid content of thymus vulgaris L. under salt stress. Plant Physiol Biochem 222:109698. https:\/\/doi.org\/10.1016\/j.plaphy.2025.109698","journal-title":"Plant Physiol Biochem"},{"issue":"2","key":"11377_CR8","doi-asserted-by":"publisher","first-page":"277","DOI":"10.3390\/antiox10020277","volume":"10","author":"S Sachdev","year":"2021","unstructured":"Sachdev S, Ansari SA, Ansari MI, Fujita M, Hasanuzzaman M (2021) Abiotic stress and reactive oxygen species: Generation, signaling, and defense mechanisms. Antioxidants 10(2):277. https:\/\/doi.org\/10.3390\/antiox10020277","journal-title":"Antioxidants"},{"issue":"2","key":"11377_CR9","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1111\/plb.13054","volume":"22","author":"Z Abideen","year":"2020","unstructured":"Abideen Z, Koyro HW, Huchzermeyer B, Ansari R, Zulfiqar F, Gul B (2020) Ameliorating effects of Biochar on photosynthetic efficiency and antioxidant defence of phragmites Karka under drought stress. Plant Biol 22(2):259\u2013266. https:\/\/doi.org\/10.1111\/plb.13054","journal-title":"Plant Biol"},{"issue":"2","key":"11377_CR10","doi-asserted-by":"publisher","first-page":"2189","DOI":"10.4081\/ija.2023.2189","volume":"18","author":"F Altobelli","year":"2023","unstructured":"Altobelli F, Dalla Marta A, Benedetti A, Konyushkova M, Corti G (2023) Integrated soil-water-crop management in salt-affected areas. Italian J Agron 18(2):2189. https:\/\/doi.org\/10.4081\/ija.2023.2189","journal-title":"Italian J Agron"},{"issue":"1","key":"11377_CR11","doi-asserted-by":"publisher","first-page":"15062","DOI":"10.1038\/s41598-024-65834-3","volume":"14","author":"S Ahmad","year":"2024","unstructured":"Ahmad S, Khan Sehrish A, Hussain A, Zhang L, Owdah Alomrani S, Ahmad A et al (2024) Salt stress amelioration and nutrient strengthening in spinach (Spinacia Oleracea L.) via Biochar amendment and zinc fortification: seed priming versus foliar application. Sci Rep 14(1):15062. https:\/\/doi.org\/10.1038\/s41598-024-65834-3","journal-title":"Sci Rep"},{"issue":"7","key":"11377_CR12","doi-asserted-by":"publisher","first-page":"3074","DOI":"10.3390\/ijms26073074","volume":"26","author":"Y Wang","year":"2025","unstructured":"Wang Y, Qi Y, Wang L, Xu C, Li W, Dang Z et al (2025) Genome-Wide identification and expression profiling of Dehydration-Responsive Element-Binding family genes in flax (Linum usitatissimum L). Int J Mol Sci 26(7):3074. https:\/\/doi.org\/10.3390\/ijms26073074","journal-title":"Int J Mol Sci"},{"issue":"3","key":"11377_CR13","doi-asserted-by":"publisher","first-page":"173","DOI":"10.12692\/ijb\/17.3.173-190","volume":"17","author":"T Tufail","year":"2020","unstructured":"Tufail T, Riaz M, Arshad MU, Gilani SA, Ain HBU, Khursheed T et al (2020) Functional and nutraceutical scenario of flaxseed and Sesame. Int J Biol Sci 17(3):173\u2013190. https:\/\/doi.org\/10.12692\/ijb\/17.3.173-190","journal-title":"Int J Biol Sci"},{"key":"11377_CR14","doi-asserted-by":"publisher","unstructured":"Kunutsor SK, Jassal DS, Ravandi A, Lehoczki A (2025) Dietary flaxseed: cardiometabolic benefits and its role in promoting healthy aging. GeroScience 1\u201329. https:\/\/doi.org\/10.1007\/s11357-025-01512-0","DOI":"10.1007\/s11357-025-01512-0"},{"key":"11377_CR15","unstructured":"Ahloowalia B, Prakash J, Savangikar V, Savangikar C Plant tissue culture. Low cost options for tissue culture technology in developing countries; Vienna- Austria: International Atomic Energy Agency. ISBN1011\u20134289 2004 (acces date: 02.12.2025)"},{"issue":"1","key":"11377_CR16","doi-asserted-by":"publisher","first-page":"45","DOI":"10.3390\/agronomy13010045","volume":"13","author":"A Rossi","year":"2022","unstructured":"Rossi A, Clemente C, Tavarini S, Angelini LG (2022) Variety and sowing date affect seed yield and chemical composition of linseed grown under organic production system in a semiarid mediterranean environment. Agronomy 13(1):45. https:\/\/doi.org\/10.3390\/agronomy13010045","journal-title":"Agronomy"},{"issue":"1","key":"11377_CR17","doi-asserted-by":"publisher","first-page":"95","DOI":"10.38001\/ijlsb.690295","volume":"3","author":"SF Arslanoglu","year":"2020","unstructured":"Arslanoglu SF, Aytac S (2020) The important in terms of health of flax (Linum usitatissimum L). Int J Life Sci Biotechnol 3(1):95\u2013107. https:\/\/doi.org\/10.38001\/ijlsb.690295","journal-title":"Int J Life Sci Biotechnol"},{"issue":"6","key":"11377_CR18","doi-asserted-by":"publisher","first-page":"1178","DOI":"10.3390\/land14061178","volume":"14","author":"P Barba\u015b","year":"2025","unstructured":"Barba\u015b P, Sawicka B, Skiba D, Pszcz\u00f3\u0142kowski P (2025) Geographical and Soil-Based assessment of yield and fiber quality in two flax varieties in Central\u2013Eastern Poland using the flax value chain approach. Land 14(6):1178. https:\/\/doi.org\/10.3390\/land14061178","journal-title":"Land"},{"issue":"21","key":"11377_CR19","doi-asserted-by":"publisher","first-page":"6661","DOI":"10.3390\/ma14216661","volume":"14","author":"S Kocira","year":"2021","unstructured":"Kocira S, Szparaga A, Krawczuk A, Barto\u0161 P, Zagu\u0142a G, Plawgo M et al (2021) Plant material as a novel tool in designing and formulating modern biostimulants\u2014analysis of botanical extract from Linum usitatissimum L. Materials 14(21):6661. https:\/\/doi.org\/10.3390\/ma14216661","journal-title":"Materials"},{"key":"11377_CR20","doi-asserted-by":"publisher","first-page":"1174339","DOI":"10.3389\/fpls.2023.1174339","volume":"14","author":"YE Arvas","year":"2023","unstructured":"Arvas YE, Marakli S, Kaya Y, Kalendar R (2023) The power of retrotransposons in high-throughput genotyping and sequencing. Front Plant Sci 14:1174339. https:\/\/doi.org\/10.3389\/fpls.2023.1174339","journal-title":"Front Plant Sci"},{"issue":"5","key":"11377_CR21","doi-asserted-by":"publisher","first-page":"2478","DOI":"10.1038\/nprot.2006.377","volume":"1","author":"R Kalendar","year":"2006","unstructured":"Kalendar R, Schulman AH (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc 1(5):2478. https:\/\/doi.org\/10.1038\/nprot.2006.377","journal-title":"Nat Protoc"},{"issue":"4","key":"11377_CR22","doi-asserted-by":"publisher","first-page":"2375","DOI":"10.21597\/jist.1177585","volume":"12","author":"A Necip","year":"2022","unstructured":"Necip A, Durgun M (2022) Antioxidant properties, total phenolic content and LC-MS\/MS analysis of mentha pulegium, lepidium Draba and Centaurea solstitialis. J Inst Sci Technol 12(4):2375\u20132385. https:\/\/doi.org\/10.21597\/jist.1177585","journal-title":"J Inst Sci Technol"},{"issue":"3","key":"11377_CR23","doi-asserted-by":"publisher","first-page":"1928","DOI":"10.1002\/fsn3.3888","volume":"12","author":"A Necip","year":"2024","unstructured":"Necip A, Demirtas I, Tayhan SE, I\u015f\u0131k M, Bilgin S, Turan \u0130F et al (2024) Isolation of phenolic compounds from eco-friendly white bee propolis: Antioxidant, wound\u2010healing, and anti\u2010Alzheimer effects. Food Sci Nutr 12(3):1928\u20131939. https:\/\/doi.org\/10.1002\/fsn3.3888","journal-title":"Food Sci Nutr"},{"issue":"7","key":"11377_CR24","doi-asserted-by":"publisher","first-page":"1071","DOI":"10.3390\/plants14071071","volume":"14","author":"M Amangeldinova","year":"2025","unstructured":"Amangeldinova M, Ersat\u0131r M, Necip A, Cimentepe M, Kudrina N, Terletskaya N et al (2025) Green extraction strategies and bioactivity of rheum cordatum losinsk: Antioxidant, Antimicrobial, and molecular Docking insights. Plants 14(7):1071. https:\/\/doi.org\/10.3390\/plants14071071","journal-title":"Plants"},{"key":"11377_CR25","doi-asserted-by":"publisher","unstructured":"Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedures. Plant genomes: methods for genetic and physical mapping. Springer, pp 1\u201313. https:\/\/doi.org\/10.1007\/978-94-011-2442-3","DOI":"10.1007\/978-94-011-2442-3"},{"issue":"8","key":"11377_CR26","doi-asserted-by":"publisher","first-page":"957","DOI":"10.1080\/10934529.2020.1760016","volume":"55","author":"V Lanc\u00edkov\u00e1","year":"2020","unstructured":"Lanc\u00edkov\u00e1 V, \u017diarovsk\u00e1 J (2020) Inter-retrotransposon amplified polymorphism markers revealed long terminal repeat retrotransposon insertion polymorphism in flax cultivated on the experimental fields around Chernobyl. J Environ Sci Health Part A 55(8):957\u2013963. https:\/\/doi.org\/10.1080\/10934529.2020.1760016","journal-title":"J Environ Sci Health Part A"},{"key":"11377_CR27","first-page":"223","volume":"44","author":"P Jaccard","year":"1908","unstructured":"Jaccard P (1908) Nouvelles recherches Sur La distribution Florale. Bull De La Soci\u00e9t\u00e9 Vaudoise Des Sci Nat 44:223\u2013270","journal-title":"Bull De La Soci\u00e9t\u00e9 Vaudoise Des Sci Nat"},{"issue":"9","key":"11377_CR28","doi-asserted-by":"publisher","first-page":"968","DOI":"10.1080\/10408398.2011.576319","volume":"53","author":"R Upadhyay","year":"2013","unstructured":"Upadhyay R, Mohan Rao LJ (2013) An outlook on chlorogenic acids\u2014occurrence, chemistry, technology, and biological activities. Crit Rev Food Sci Nutr 53(9):968\u2013984. https:\/\/doi.org\/10.1080\/10408398.2011.576319","journal-title":"Crit Rev Food Sci Nutr"},{"key":"11377_CR29","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/j.biopha.2017.10.064","volume":"97","author":"M Naveed","year":"2018","unstructured":"Naveed M, Hejazi V, Abbas M, Kamboh AA, Khan GJ, Shumzaid M et al (2018) Chlorogenic acid (CGA): A Pharmacological review and call for further research. Biomed Pharmacother 97:67\u201374. https:\/\/doi.org\/10.1016\/j.biopha.2017.10.064","journal-title":"Biomed Pharmacother"},{"key":"11377_CR30","doi-asserted-by":"publisher","first-page":"1385","DOI":"10.1007\/s00122-011-1539-2","volume":"122","author":"P Sm\u00fdkal","year":"2011","unstructured":"Sm\u00fdkal P, Ba\u010dov\u00e1-Kerteszov\u00e1 N, Kalendar R, Corander J, Schulman AH, Pavelek M (2011) Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers. Theor Appl Genet 122:1385\u20131397.https:\/\/doi.org\/10.1007\/s00122-011-1539-2","journal-title":"Theor Appl Genet"},{"issue":"2","key":"11377_CR31","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1007\/s10722-022-01436-0","volume":"70","author":"YE Arvas","year":"2022","unstructured":"Arvas YE, Yolci MS, Marakli S (2022) Investigation the effect of drought stress on tolerant and resistant rice (Oryza sativa L.) varieties in terms of morphologic and genetic characters. Genet Resour Crop Evol 70(2):427\u2013436. https:\/\/doi.org\/10.1007\/s10722-022-01436-0","journal-title":"Genet Resour Crop Evol"},{"issue":"1","key":"11377_CR32","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1080\/13102818.2022.2043777","volume":"36","author":"YE Arvas","year":"2022","unstructured":"Arvas YE, Koca\u00e7al\u0131\u015fkan \u0130, Ordu E, Eri\u015fen S (2022) Comparative retrotransposon analysis of mutant and non-mutant rice varieties grown at different salt concentrations. Biotechnol Biotechnol Equip 36(1):25\u201334. https:\/\/doi.org\/10.1080\/13102818.2022.2043777","journal-title":"Biotechnol Biotechnol Equip"},{"key":"11377_CR33","doi-asserted-by":"publisher","unstructured":"Haji E, Abed M, Arvas YE, Marakli S, Kaya Y (2023) Analyses of P-Tst-1, P-Tst-3 and P-Tst-6 retrotransposons in conventionally and organically produced tomatoes. J Anim Plant Sciences-Japs 33(5). https:\/\/doi.org\/10.36899\/JAPS.2023.5.0697","DOI":"10.36899\/JAPS.2023.5.0697"},{"key":"11377_CR34","doi-asserted-by":"publisher","unstructured":"Tufan AF, Ibisoglu MS, Yilmaz S, Gozukirmizi N (2020) Investigation of rice (Oryza sativa L.) retrotransposons in different taxa. Genet Resour Crop Evol 1\u20137. https:\/\/doi.org\/10.1007\/s10722-020-00919-2","DOI":"10.1007\/s10722-020-00919-2"},{"issue":"2","key":"11377_CR35","doi-asserted-by":"publisher","first-page":"751","DOI":"10.2298\/GENSR2002751N","volume":"52","author":"Z Noormohammadi","year":"2020","unstructured":"Noormohammadi Z, Torabizadeh E, Farahani F, Alishah O, Sheidai M (2020) Genetic and physiological analysis of cotton cultivars under salt stress. Genetika 52(2):751\u2013764. https:\/\/doi.org\/10.2298\/GENSR2002751N","journal-title":"Genetika"},{"key":"11377_CR36","volume-title":"Retrotransposon analysis in rice and Turkish upland rice growth under Boron stress","author":"\u00d6 Yetgin","year":"2019","unstructured":"Yetgin \u00d6 (2019) Retrotransposon analysis in rice and Turkish upland rice growth under Boron stress. Ondokuz Mayis University, Samsun-Turkey"},{"key":"11377_CR37","doi-asserted-by":"publisher","unstructured":"Kalendar R, Muterko A, Boronnikova S (2021) Retrotransposable elements: DNA fingerprinting and the assessment of genetic diversity. Molecular Plant Taxonomy: Springer; pp. 263\u2009\u2013\u200986. https:\/\/doi.org\/10.1007\/978-1-0716-0997-2_15","DOI":"10.1007\/978-1-0716-0997-2_15"}],"container-title":["Molecular Biology Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-025-11377-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11033-025-11377-3","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-025-11377-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T14:09:01Z","timestamp":1766153341000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11033-025-11377-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,12,19]]},"references-count":37,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,12]]}},"alternative-id":["11377"],"URL":"https:\/\/doi.org\/10.1007\/s11033-025-11377-3","relation":{},"ISSN":["0301-4851","1573-4978"],"issn-type":[{"value":"0301-4851","type":"print"},{"value":"1573-4978","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,12,19]]},"assertion":[{"value":"5 August 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 December 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 December 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"The study complies with established ethical standards.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}},{"value":"Not applicable. The study was conducted solely by the author and did not involve additional participants.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}},{"value":"This study does not involve any experiments on humans or animals.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to publish"}}],"article-number":"218"}}