{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T13:12:46Z","timestamp":1784207566728,"version":"3.55.0"},"reference-count":50,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T00:00:00Z","timestamp":1784160000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T00:00:00Z","timestamp":1784160000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Biol Rep"],"published-print":{"date-parts":[[2026,12]]},"DOI":"10.1007\/s11033-026-12311-x","type":"journal-article","created":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T12:18:37Z","timestamp":1784204317000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["CRESS domain-based molecular characterization of Begomovirus gossypimultanense"],"prefix":"10.1007","volume":"53","author":[{"given":"Niranjana Prem","family":"Minipreman","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marimuthu","family":"Elangovan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nikeshun","family":"Vivekananthan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Archana","family":"Rathore","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susheel","family":"kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashok","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kajal Kumar","family":"Biswas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vijayanandraj","family":"Selvaraj","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,16]]},"reference":[{"key":"12311_CR1","doi-asserted-by":"publisher","first-page":"98","DOI":"10.1016\/j.fcr.2015.07.017","volume":"182","author":"GA Constable","year":"2015","unstructured":"Constable GA, Bange MP (2015) The yield potential of cotton (Gossypium hirsutum L). Field Crops Res 182:98\u2013106. https:\/\/doi.org\/10.1016\/j.fcr.2015.07.017","journal-title":"Field Crops Res"},{"key":"12311_CR2","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1007\/s13205-016-0534-3","volume":"6","author":"R Yan","year":"2016","unstructured":"Yan R, Liang C, Meng Z, Malik W, Zhu T, Zong X, Guo S, Zhang R (2016) Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp). 3 Biotech 6:217. https:\/\/doi.org\/10.1007\/s13205-016-0534-3","journal-title":"3 Biotech"},{"key":"12311_CR3","doi-asserted-by":"publisher","first-page":"1969","DOI":"10.1007\/s00705-003-0149-y","volume":"148","author":"S Mansoor","year":"2003","unstructured":"Mansoor S, Briddon RW, Bull SE, Bedford ID, Bashir A, Hussain M, Saeed M, Zafar Y, Malik KA, Fauquet CM, Stanley J (2003) Cotton leaf curl disease is associated with multiple monopartite begomoviruses supported by single DNA \u03b2. Arch Virol 148:1969\u20131986. https:\/\/doi.org\/10.1007\/s00705-003-0149-y","journal-title":"Arch Virol"},{"key":"12311_CR4","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1099\/vir.0.049627-0","volume":"94","author":"MN Sattar","year":"2013","unstructured":"Sattar MN, Kvarnheden A, Saeed M, Briddon RW (2013) Cotton leaf curl disease \u2013 an emerging threat to cotton production worldwide. J Gen Virol 94:695\u2013710. https:\/\/doi.org\/10.1099\/vir.0.049627-0","journal-title":"J Gen Virol"},{"key":"12311_CR5","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1017\/S0007485300029862","volume":"22","author":"TW Kirkpatrick","year":"1931","unstructured":"Kirkpatrick TW (1931) Further studies on leaf-curl of cotton in the Sudan. Bull Entomol Res 22:323\u2013363. https:\/\/doi.org\/10.1017\/S0007485300029862","journal-title":"Bull Entomol Res"},{"key":"12311_CR6","unstructured":"Varma A, Malathi VG, Handa A, Aiton M, Harrison BD, Verma JP et al (1993) Occurrence of leaf-curl of cotton and okra in Northern India. In: Abstract of the 6th International Congress of Plant Pathology, Montreal"},{"key":"12311_CR7","first-page":"179","volume":"8","author":"N Rishi","year":"1994","unstructured":"Rishi N, Chauhan MS (1994) Appearance of leaf curl disease of cotton in Northern India. J Cotton Res Dev 8:179\u2013180","journal-title":"J Cotton Res Dev"},{"key":"12311_CR8","first-page":"129","volume":"13","author":"AM Narula","year":"1999","unstructured":"Narula AM, Monga D, Chauhan MS, Raj S (1999) Cotton leaf curl virus disease in India-the challenge ahead. J Cotton Res Dev 13:129\u2013138","journal-title":"J Cotton Res Dev"},{"key":"12311_CR9","doi-asserted-by":"publisher","first-page":"17361","DOI":"10.1038\/s41598-017-17680-9","volume":"7","author":"S Datta","year":"2017","unstructured":"Datta S, Budhauliya R, Das B et al (2017) Rebound of cotton leaf curl Multan virus and its exclusive detection in cotton leaf curl disease outbreak, Punjab (India), 2015. Sci Rep 7:17361. https:\/\/doi.org\/10.1038\/s41598-017-17680-9","journal-title":"Sci Rep"},{"issue":"4","key":"12311_CR10","doi-asserted-by":"publisher","first-page":"e0231886","DOI":"10.1371\/journal.pone.0231886","volume":"15","author":"KK Biswas","year":"2020","unstructured":"Biswas KK, Bhattacharyya UK, Palchoudhury S, Balram N, Kumar A, Arora R et al (2020) Dominance of recombinant cotton leaf curl Multan-Rajasthan virus associated with cotton leaf curl disease outbreak in northwest India. PLoS ONE 15(4):e0231886. https:\/\/doi.org\/10.1371\/journal.pone.0231886","journal-title":"PLoS ONE"},{"issue":"1","key":"12311_CR11","doi-asserted-by":"publisher","first-page":"e0313844","DOI":"10.1371\/journal.pone.0313844","volume":"20","author":"KK Biswas","year":"2025","unstructured":"Biswas KK, Balram N, Elangovan M, Palchoudhury S, Bhattacharyya UK, Khatoon H et al (2025) Divergent cotton leaf curl Multan betasatellite and three different alphasatellite species associated with cotton leaf curl disease outbreak in Northwest India. PLoS ONE 20(1):e0313844. https:\/\/doi.org\/10.1371\/journal.pone.0313844","journal-title":"PLoS ONE"},{"key":"12311_CR12","doi-asserted-by":"publisher","first-page":"855","DOI":"10.1007\/s00705-012-1225-y","volume":"157","author":"PA Rajagopalan","year":"2012","unstructured":"Rajagopalan PA, Naik A, Katturi P, Kurulekar M, Kankanallu RS, Anandalakshimi R (2012) Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) in north western India. Arch Virol 157:855\u2013868. https:\/\/doi.org\/10.1007\/s00705-012-1225-y","journal-title":"Arch Virol"},{"key":"12311_CR13","doi-asserted-by":"publisher","first-page":"102648","DOI":"10.1016\/j.ecoinf.2024.102648","volume":"81","author":"SK Sain","year":"2024","unstructured":"Sain SK, Paul D, Kumar P, Kumar A, Mohan M, Monga D, Prakash AH, Prasad Y (2024) Cotton leaf curl disease (CLCuD) prediction modeling in upland cotton under different ecological conditions using machine learning tools. Ecol Inf 81:102648. https:\/\/doi.org\/10.1016\/j.ecoinf.2024.102648","journal-title":"Ecol Inf"},{"key":"12311_CR14","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1016\/S1360-1385(03)00007-4","volume":"8","author":"S Mansoor","year":"2003","unstructured":"Mansoor S, Briddon RW, Zafar Y, Stanley J (2003) Geminivirus disease complexes: an emerging threat. Trends Plant Sci 8:128\u2013134. https:\/\/doi.org\/10.1016\/S1360-1385(03)00007-4","journal-title":"Trends Plant Sci"},{"key":"12311_CR15","doi-asserted-by":"publisher","first-page":"2587","DOI":"10.1007\/s00705-018-3854-2","volume":"163","author":"RW Briddon","year":"2018","unstructured":"Briddon RW, Martin DP, Roumagnac P, Navas-Castillo J, Fiallo-Oliv\u00e9 E et al (2018) Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites. Arch Virol 163:2587\u20132600. https:\/\/doi.org\/10.1007\/s00705-018-3854-2","journal-title":"Arch Virol"},{"key":"12311_CR16","doi-asserted-by":"publisher","first-page":"e00582","DOI":"10.1128\/JVI.00582-20","volume":"94","author":"M Krupovic","year":"2020","unstructured":"Krupovic M, Varsani A, Kazlauskas D, Breitbart M, Delwart E, Rosario K, Yutin N, Wolf YI, Harrach B, Zerbini FM et al (2020) Cressdnaviricota: a virus phylum unifying seven families of Rep-encoding viruses with single-stranded, circular DNA genomes. J Virol 94:e00582\u2013e00520. https:\/\/doi.org\/10.1128\/JVI.00582-20","journal-title":"J Virol"},{"key":"12311_CR17","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1016\/j.gene.2017.09.061","volume":"638","author":"Y Shweta, Akhter","year":"2018","unstructured":"Shweta, Akhter Y, Khan JA (2018) Genome wide identification of cotton (Gossypium hirsutum)-encoded microRNA targets against cotton leaf curl Burewala virus. Gene 638:60\u201365. https:\/\/doi.org\/10.1016\/j.gene.2017.09.061","journal-title":"Gene"},{"key":"12311_CR18","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1016\/bs.aivir.2018.09.002","volume":"103","author":"L Zhao","year":"2019","unstructured":"Zhao L, Rosario K, Breitbart M, Duffy S (2019) Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range. Adv Virus Res 103:71\u2013133. https:\/\/doi.org\/10.1016\/bs.aivir.2018.09.002","journal-title":"Adv Virus Res"},{"issue":"12","key":"12311_CR19","doi-asserted-by":"publisher","first-page":"2393","DOI":"10.3390\/v15122393","volume":"15","author":"E Tarasova","year":"2023","unstructured":"Tarasova E, Khayat R (2023) Dynamics and conformations of a full-length CRESS-DNA replicase. Viruses 15(12):2393. https:\/\/doi.org\/10.3390\/v15122393","journal-title":"Viruses"},{"issue":"2","key":"12311_CR20","doi-asserted-by":"publisher","first-page":"veab054","DOI":"10.1093\/ve\/veab054","volume":"7","author":"T Farooq","year":"2021","unstructured":"Farooq T, Umar M, She X, Tang Y, He Z (2021) Molecular phylogenetics and evolutionary analysis of a highly recombinant begomovirus, cotton leaf curl Multan virus, and associated satellites. Virus Evol 7(2):veab054. https:\/\/doi.org\/10.1093\/ve\/veab054","journal-title":"Virus Evol"},{"key":"12311_CR21","doi-asserted-by":"publisher","first-page":"8029","DOI":"10.1073\/pnas.88.18.8029","volume":"88","author":"DC Stenger","year":"1991","unstructured":"Stenger DC, Revington GN, Stevenson MC, Bisaro DM (1991) Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc Natl Acad Sci 88:8029\u20138033. https:\/\/doi.org\/10.1073\/pnas.88.18.8029","journal-title":"Proc Natl Acad Sci"},{"issue":"3","key":"12311_CR22","doi-asserted-by":"publisher","first-page":"e00780","DOI":"10.1128\/spectrum.00780-22","volume":"10","author":"P Capozza","year":"2022","unstructured":"Capozza P, Lanave G, Diakoudi G, Pellegrini F, Cardone R, Vasinioti VI, Decaro N, Elia G, Catella C, Alberti A, B\u00e1nyai K, Mendoza-Roldan JA, Otranto D, Buonavoglia C, Martella V (2022) Diversity of CRESS DNA viruses in squamates recapitulates hosts dietary and environmental sources of exposure. Microbiol Spectr 10(3):e00780\u2013e00722. https:\/\/doi.org\/10.1128\/spectrum.00780-22","journal-title":"Microbiol Spectr"},{"key":"12311_CR23","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1038\/nrmicro3067","volume":"11","author":"M Chandler","year":"2013","unstructured":"Chandler M, De La Cruz F, Dyda F, Hickman AB, Moncalian G, Ton-Hoang B (2013) Breaking and joining single-stranded DNA: the HUH endonuclease superfamily. Nat Rev Microbiol 11:525\u2013538. https:\/\/doi.org\/10.1038\/nrmicro3067","journal-title":"Nat Rev Microbiol"},{"issue":"13","key":"12311_CR24","doi-asserted-by":"publisher","first-page":"3279","DOI":"10.1093\/nar\/20.13.3279","volume":"20","author":"TV Ilyina","year":"1992","unstructured":"Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20(13):3279\u20133285. https:\/\/doi.org\/10.1093\/nar\/20.13.3279","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"12311_CR25","doi-asserted-by":"publisher","first-page":"2763","DOI":"10.1099\/0022-1317-73-10-2763","volume":"73","author":"EV Koonin","year":"1992","unstructured":"Koonin EV, Ilyina TV (1992) Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J Gen Virol 73(10):2763\u20132766. https:\/\/doi.org\/10.1099\/0022-1317-73-10-2763","journal-title":"J Gen Virol"},{"issue":"8","key":"12311_CR26","doi-asserted-by":"publisher","first-page":"1465","DOI":"10.1007\/s007050170072","volume":"146","author":"GR Arg\u00fcello-Astorga","year":"2001","unstructured":"Arg\u00fcello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to motif 1 in the replication proteins of geminiviruses: Identification of potential interacting amino acid\u2013base pairs by a comparative approach. Arch Virol 146(8):1465\u20131485. https:\/\/doi.org\/10.1007\/s007050170072","journal-title":"Arch Virol"},{"key":"12311_CR27","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1007\/s000180050433","volume":"56","author":"C Gutierrez","year":"1999","unstructured":"Gutierrez C (1999) Geminivirus DNA replication. Cell Mol Life Sci 56:313\u2013329. https:\/\/doi.org\/10.1007\/s000180050433","journal-title":"Cell Mol Life Sci"},{"issue":"38","key":"12311_CR28","doi-asserted-by":"publisher","first-page":"24448","DOI":"10.1074\/jbc.273.38.24448","volume":"273","author":"BM Orozco","year":"1998","unstructured":"Orozco BM, Hanley-Bowdoin L (1998) Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein. J Biol Chem 273(38):24448\u201324456. https:\/\/doi.org\/10.1074\/jbc.273.38.24448","journal-title":"J Biol Chem"},{"key":"12311_CR29","doi-asserted-by":"publisher","first-page":"1182","DOI":"10.1128\/jvi.02143-10","volume":"85","author":"TE Nash","year":"2011","unstructured":"Nash TE, Dallas MB, Reyes MI, Buhrman GK, Ascencio-Iba\u00f1ez JT, Hanley-Bowdoin L (2011) Functional analysis of a novel motif conserved across geminivirus Rep proteins. J Virol 85:1182\u20131192. https:\/\/doi.org\/10.1128\/jvi.02143-10","journal-title":"J Virol"},{"key":"12311_CR30","doi-asserted-by":"publisher","first-page":"3425","DOI":"10.1038\/s41467-019-11433-0","volume":"10","author":"D Kazlauskas","year":"2019","unstructured":"Kazlauskas D, Varsani A, Koonin EV et al (2019) Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids. Nat Commun 10:3425. https:\/\/doi.org\/10.1038\/s41467-019-11433-0","journal-title":"Nat Commun"},{"key":"12311_CR31","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1007\/s42360-024-00758-6","volume":"77","author":"T Pawar","year":"2024","unstructured":"Pawar T, Sharma S, Arora RK et al (2024) Distribution of cotton leaf curl virus species\/strain and characterization of associated satellite molecules in Gossypium hirsutum. Indian Phytopathol 77:815\u2013823. https:\/\/doi.org\/10.1007\/s42360-024-00758-6","journal-title":"Indian Phytopathol"},{"key":"12311_CR32","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1016\/j.mex.2019.01.010","volume":"6","author":"Q Ali","year":"2019","unstructured":"Ali Q, Salisu IB, Raza A, Shahid AA, Rao AQ, Husnain T (2019) A modified protocol for rapid DNA isolation from cotton (Gossypium spp). MethodsX 6:259\u2013264. https:\/\/doi.org\/10.1016\/j.mex.2019.01.010","journal-title":"MethodsX"},{"key":"12311_CR33","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772\u2013780. https:\/\/doi.org\/10.1093\/molbev\/mst010","journal-title":"Mol Biol Evol"},{"key":"12311_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/molbev\/msae263","volume":"41","author":"S Kumar","year":"2024","unstructured":"Kumar S, Stecher G, Suleski M, Sanderford M, Sharma S, Tamura K (2024) Molecular evolutionary genetics analysis version 12 for adaptive and green computing. Mol Biol Evol 41:1\u20139. https:\/\/doi.org\/10.1093\/molbev\/msae263","journal-title":"Mol Biol Evol"},{"issue":"2","key":"12311_CR35","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1093\/bioinformatics\/btg412","volume":"20","author":"E Paradis","year":"2004","unstructured":"Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289\u2013290. https:\/\/doi.org\/10.1093\/bioinformatics\/btg412","journal-title":"Bioinformatics"},{"key":"12311_CR36","doi-asserted-by":"publisher","unstructured":"Revell LJ (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods in Ecology and Evolution, 3(2), 217\u2013223. https:\/\/doi.org\/10.1111\/j.2041-210X.2011.00169.x","DOI":"10.1111\/j.2041-210X.2011.00169.x"},{"issue":"13","key":"12311_CR37","doi-asserted-by":"publisher","first-page":"i248","DOI":"10.1093\/bioinformatics\/btr210","volume":"27","author":"C Scornavacca","year":"2011","unstructured":"Scornavacca C, Zickmann F, Huson DH (2011) Tanglegrams for rooted phylogenetic trees and networks. Bioinformatics 27(13):i248\u2013i256. https:\/\/doi.org\/10.1093\/bioinformatics\/btr210","journal-title":"Bioinformatics"},{"key":"12311_CR38","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1186\/s13567-024-01399-3","volume":"55","author":"M Zhang","year":"2024","unstructured":"Zhang M, Fan S, Liang M et al (2024) A panoramic view of the molecular epidemiology, evolution, and cross-species transmission of rosaviruses. Vet Res 55:145. https:\/\/doi.org\/10.1186\/s13567-024-01399-3","journal-title":"Vet Res"},{"key":"12311_CR39","doi-asserted-by":"publisher","first-page":"3299","DOI":"10.1093\/molbev\/msx248","volume":"34","author":"J Rozas","year":"2017","unstructured":"Rozas J, Ferrer-Mata A, S\u00e1nchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, S\u00e1nchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol 34:3299\u20133302. https:\/\/doi.org\/10.1093\/molbev\/msx248","journal-title":"Mol Biol Evol"},{"issue":"3","key":"12311_CR40","doi-asserted-by":"publisher","first-page":"773","DOI":"10.1093\/molbev\/msx335","volume":"35","author":"S Weaver","year":"2018","unstructured":"Weaver S, Shank SD, Spielman SJ, Li M, Muse SV, Kosakovsky Pond SL (2018) Datamonkey 2.0: A modern web application for characterizing selective and other evolutionary processes. Mol Biol Evol 35(3):773\u2013777. https:\/\/doi.org\/10.1093\/molbev\/msx335","journal-title":"Mol Biol Evol"},{"key":"12311_CR41","doi-asserted-by":"publisher","first-page":"1208","DOI":"10.1093\/molbev\/msi105","volume":"22","author":"SL Kosakovsky Pond","year":"2005","unstructured":"Kosakovsky Pond SL, Frost SDW (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22:1208\u20131222. https:\/\/doi.org\/10.1093\/molbev\/msi105","journal-title":"Mol Biol Evol"},{"key":"12311_CR42","doi-asserted-by":"publisher","first-page":"2455","DOI":"10.1093\/bioinformatics\/btq429","volume":"26","author":"W Delport","year":"2010","unstructured":"Delport W, Poon AFY, Frost SDW, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26:2455\u20132457. https:\/\/doi.org\/10.1093\/bioinformatics\/btq429","journal-title":"Bioinformatics"},{"key":"12311_CR43","doi-asserted-by":"publisher","first-page":"1224221","DOI":"10.3389\/fmicb.2023.1224221","volume":"14","author":"S Shakir","year":"2023","unstructured":"Shakir S, Mubin M, Nahid N et al (2023) REPercussions: how geminiviruses recruit host factors for replication. Front Microbiol 14:1224221. https:\/\/doi.org\/10.3389\/fmicb.2023.1224221","journal-title":"Front Microbiol"},{"key":"12311_CR44","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1099\/jgv.0.000738","volume":"98","author":"FM Zerbini","year":"2017","unstructured":"Zerbini FM, Briddon RW, Idris A, Martin DP, Moriones E, Navas-Castillo J et al (2017) ICTV virus taxonomy profile: Geminiviridae. J Gen Virol 98:131\u2013133. https:\/\/doi.org\/10.1099\/jgv.0.000738","journal-title":"J Gen Virol"},{"issue":"D1","key":"12311_CR45","doi-asserted-by":"publisher","first-page":"D444","DOI":"10.1093\/nar\/gkae1082","volume":"53","author":"M Blum","year":"2025","unstructured":"Blum M, Andreeva A, Florentino LC et al (2025) InterPro: the protein sequence classification resource in 2025. Nucleic Acids Res 53(D1):D444\u2013D456. https:\/\/doi.org\/10.1093\/nar\/gkae1082","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"12311_CR46","doi-asserted-by":"publisher","first-page":"vew037","DOI":"10.1093\/ve\/vew037","volume":"3","author":"A Varsani","year":"2017","unstructured":"Varsani A, Krupovic M (2017) Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae. Virus Evol 3(1):vew037. https:\/\/doi.org\/10.1093\/ve\/vew037","journal-title":"Virus Evol"},{"issue":"18","key":"12311_CR47","doi-asserted-by":"publisher","first-page":"e00725","DOI":"10.1128\/jvi.00725-22","volume":"96","author":"JO Souza","year":"2022","unstructured":"Souza JO, Melgarejo TA, Vu S, Nakasu EYT, Chen LF, Rojas MR, Zerbini FM, Inoue-Nagata AK, Gilbertson RL (2022) How to be a successful monopartite begomovirus in a bipartite-dominated world: emergence and spread of tomato mottle leaf curl virus in Brazil. J Virol 96(18):e00725\u2013e00722. https:\/\/doi.org\/10.1128\/jvi.00725-22","journal-title":"J Virol"},{"key":"12311_CR49","doi-asserted-by":"publisher","first-page":"3299","DOI":"10.1093\/molbev\/msx248","volume":"34","author":"J Rozas","year":"2017","unstructured":"Rozas J, Ferrer-Mata A, S\u00e1nchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, S\u00e1nchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol 34:3299\u20133302. https:\/\/doi.org\/10.1093\/molbev\/msx248","journal-title":"Mol Biol Evol"},{"key":"12311_CR50","doi-asserted-by":"publisher","DOI":"10.1007\/978-981-95-2852-3_18","volume-title":"Tomato leaf curl New Delhi virus (ToLCNDV)","author":"A Singh","year":"2026","unstructured":"Singh A et al (2026) Evolutionary analysis of tomato leaf curl New Delhi virus. In: Kumar R, Tiwari RK, Lal MK, Roy A (eds) Tomato leaf curl New Delhi virus (ToLCNDV). Springer, Singapore. https:\/\/doi.org\/10.1007\/978-981-95-2852-3_18"},{"key":"12311_CR51","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1016\/j.tig.2006.06.005","volume":"22","author":"S Biswas","year":"2006","unstructured":"Biswas S, Akey JM (2006) Genomic insights into positive selection. Trends Genet 22:437\u2013446. https:\/\/doi.org\/10.1016\/j.tig.2006.06.005","journal-title":"Trends Genet"}],"container-title":["Molecular Biology Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-026-12311-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11033-026-12311-x","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-026-12311-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T12:18:39Z","timestamp":1784204319000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11033-026-12311-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,16]]},"references-count":50,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,12]]}},"alternative-id":["12311"],"URL":"https:\/\/doi.org\/10.1007\/s11033-026-12311-x","relation":{},"ISSN":["0301-4851","1573-4978"],"issn-type":[{"value":"0301-4851","type":"print"},{"value":"1573-4978","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,16]]},"assertion":[{"value":"3 March 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"30 June 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The article does not contain any studies involving human or animal participants.","order":3,"name":"Ethics","label":"Ethcs statement","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"1176"}}