{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T05:31:16Z","timestamp":1793338276432,"version":"4.5.0"},"reference-count":31,"publisher":"Springer Science and Business Media LLC","issue":"6","license":[{"start":{"date-parts":[[2019,9,23]],"date-time":"2019-09-23T00:00:00Z","timestamp":1569196800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2019,9,23]],"date-time":"2019-09-23T00:00:00Z","timestamp":1569196800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","award":["17H05821"],"award-info":[{"award-number":["17H05821"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","award":["19H04843"],"award-info":[{"award-number":["19H04843"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"publisher","award":["16H06434"],"award-info":[{"award-number":["16H06434"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["19H04833"],"award-info":[{"award-number":["19H04833"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["17H05823"],"award-info":[{"award-number":["17H05823"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["16H06429"],"award-info":[{"award-number":["16H06429"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["16K21723"],"award-info":[{"award-number":["16K21723"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Hakubi Project, Kyoto University","award":["0"],"award-info":[{"award-number":["0"]}]},{"name":"Institute for Frontier Life and Medial Sciences, Kyoto University","award":["0"],"award-info":[{"award-number":["0"]}]},{"name":"City of Izumi, Japan","award":["0"],"award-info":[{"award-number":["0"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Virus Genes"],"published-print":{"date-parts":[[2019,12]]},"DOI":"10.1007\/s11262-019-01703-w","type":"journal-article","created":{"date-parts":[[2019,9,23]],"date-time":"2019-09-23T14:02:38Z","timestamp":1569247358000},"page":"815-824","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":12,"title":["Identification of a distinct lineage of aviadenovirus from crane feces"],"prefix":"10.1007","volume":"55","author":[{"given":"Yahiro","family":"Mukai","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuriko","family":"Tomita","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kirill","family":"Kryukov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"So","family":"Nakagawa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Makoto","family":"Ozawa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tsutomu","family":"Matsui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Keizo","family":"Tomonaga","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tadashi","family":"Imanishi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yoshihiro","family":"Kawaoka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tokiko","family":"Watanabe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4682-7698","authenticated-orcid":false,"given":"Masayuki","family":"Horie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2019,9,23]]},"reference":[{"issue":"10","key":"1703_CR1","doi-asserted-by":"publisher","first-page":"170189","DOI":"10.1098\/rsob.170189","volume":"7","author":"JL Geoghegan","year":"2017","unstructured":"Geoghegan JL, Holmes EC (2017) Predicting virus emergence amid evolutionary noise. Open Biol 7(10):170189. \n                    https:\/\/doi.org\/10.1098\/rsob.170189","journal-title":"Open Biol"},{"key":"1703_CR2","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/j.virusres.2017.10.016","volume":"243","author":"M Shi","year":"2018","unstructured":"Shi M, Zhang YZ, Holmes EC (2018) Meta-transcriptomics and the evolutionary biology of RNA viruses. Virus Res 243:83\u201390. \n                    https:\/\/doi.org\/10.1016\/j.virusres.2017.10.016","journal-title":"Virus Res"},{"key":"1703_CR3","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1186\/1743-422X-11-89","volume":"11","author":"R Bodewes","year":"2014","unstructured":"Bodewes R, Ruiz-Gonzalez A, Schapendonk CM, van den Brand JM, Osterhaus AD, Smits SL (2014) Viral metagenomic analysis of feces of wild small carnivores. Virol J 11:89. \n                    https:\/\/doi.org\/10.1186\/1743-422X-11-89","journal-title":"Virol J"},{"issue":"6","key":"1703_CR4","doi-asserted-by":"publisher","first-page":"1033","DOI":"10.1111\/j.1755-0998.2011.03048.x","volume":"11","author":"H Honma","year":"2011","unstructured":"Honma H, Suyama Y, Nakai Y (2011) Detection of parasitizing coccidia and determination of host crane species, sex and genotype by faecal DNA analysis. Mol Ecol Resour 11(6):1033\u20131044. \n                    https:\/\/doi.org\/10.1111\/j.1755-0998.2011.03048.x","journal-title":"Mol Ecol Resour"},{"key":"1703_CR5","doi-asserted-by":"publisher","DOI":"10.1111\/1348-0421.12545","author":"K Okuya","year":"2017","unstructured":"Okuya K, Kanazawa N, Kanda T, Kuwahara M, Matsuu A, Horie M, Masatani T, Toda S, Ozawa M (2017) Genetic characterization of an avian H4N6 influenza virus isolated from the Izumi plain, Japan. Microbiol Immunol. \n                    https:\/\/doi.org\/10.1111\/1348-0421.12545","journal-title":"Microbiol Immunol"},{"issue":"4","key":"1703_CR6","doi-asserted-by":"publisher","first-page":"911","DOI":"10.1007\/s00705-017-3698-1","volume":"163","author":"H Nakagawa","year":"2018","unstructured":"Nakagawa H, Okuya K, Kawabata T, Matsuu A, Takase K, Kuwahara M, Toda S, Ozawa M (2018) Genetic characterization of low-pathogenic avian influenza viruses isolated on the Izumi plain in Japan: possible association of dynamic movements of wild birds with AIV evolution. Arch Virol 163(4):911\u2013923. \n                    https:\/\/doi.org\/10.1007\/s00705-017-3698-1","journal-title":"Arch Virol"},{"issue":"20","key":"1703_CR7","doi-asserted-by":"publisher","first-page":"21132","DOI":"10.2807\/1560-7917.ES2015.20.20.21132","volume":"20","author":"M Ozawa","year":"2015","unstructured":"Ozawa M, Matsuu A, Tokorozaki K, Horie M, Masatani T, Nakagawa H, Okuya K, Kawabata T, Toda S (2015) Genetic diversity of highly pathogenic H5N8 avian influenza viruses at a single overwintering site of migratory birds in Japan, 2014\/15. Euro Surveill 20(20):21132","journal-title":"Euro Surveill"},{"issue":"2","key":"1703_CR8","doi-asserted-by":"publisher","first-page":"797","DOI":"10.1111\/tbed.13087","volume":"66","author":"M Ozawa","year":"2019","unstructured":"Ozawa M, Matsuu A, Khalil AM, Nishi N, Tokorozaki K, Masatani T, Horie M, Okuya K, Ueno K, Kuwahara M, Toda S (2019) Phylogenetic variations of highly pathogenic H5N6 avian influenza viruses isolated from wild birds in the Izumi plain, Japan, during the 2016\u20132017 winter season. Transbound Emerg Dis 66(2):797\u2013806. \n                    https:\/\/doi.org\/10.1111\/tbed.13087","journal-title":"Transbound Emerg Dis"},{"issue":"3","key":"1703_CR9","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1111\/j.1471-8286.2007.01678.x","volume":"7","author":"S Ratnasingham","year":"2007","unstructured":"Ratnasingham S, Hebert PD (2007) The barcode of life data system. Mol Ecol Notes 7(3):355\u2013364. \n                    https:\/\/doi.org\/10.1111\/j.1471-8286.2007.01678.x","journal-title":"Mol Ecol Notes"},{"key":"1703_CR10","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"C Camacho","year":"2009","unstructured":"Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinform 10:421. \n                    https:\/\/doi.org\/10.1186\/1471-2105-10-421","journal-title":"BMC Bioinform"},{"issue":"17","key":"1703_CR11","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","volume":"34","author":"S Chen","year":"2018","unstructured":"Chen S, Zhou Y, Chen Y, Gu J (2018) fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17):i884\u2013i890. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/bty560","journal-title":"Bioinformatics"},{"issue":"5","key":"1703_CR12","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1101\/gr.213959.116","volume":"27","author":"S Nurk","year":"2017","unstructured":"Nurk S, Meleshko D, Korobeynikov A, Pevzner PA (2017) metaSPAdes: a new versatile metagenomic assembler. Genome Res 27(5):824\u2013834. \n                    https:\/\/doi.org\/10.1101\/gr.213959.116","journal-title":"Genome Res"},{"issue":"10","key":"1703_CR13","doi-asserted-by":"publisher","first-page":"e0163962","DOI":"10.1371\/journal.pone.0163962","volume":"11","author":"W Shen","year":"2016","unstructured":"Shen W, Le S, Li Y, Hu F (2016) SeqKit: a cross-platform and ultrafast toolkit for FASTA\/Q file manipulation. PLoS ONE 11(10):e0163962. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0163962","journal-title":"PLoS ONE"},{"issue":"11","key":"1703_CR14","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/nbt.3988","volume":"35","author":"M Steinegger","year":"2017","unstructured":"Steinegger M, Soding J (2017) MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat Biotechnol 35(11):1026\u20131028. \n                    https:\/\/doi.org\/10.1038\/nbt.3988","journal-title":"Nat Biotechnol"},{"issue":"5","key":"1703_CR15","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","volume":"19","author":"A Bankevich","year":"2012","unstructured":"Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19(5):455\u2013477. \n                    https:\/\/doi.org\/10.1089\/cmb.2012.0021","journal-title":"J Comput Biol"},{"issue":"4","key":"1703_CR16","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357\u2013359. \n                    https:\/\/doi.org\/10.1038\/nmeth.1923","journal-title":"Nat Methods"},{"issue":"12","key":"1703_CR17","doi-asserted-by":"publisher","first-page":"1691","DOI":"10.1093\/bioinformatics\/btr174","volume":"27","author":"DW Barnett","year":"2011","unstructured":"Barnett DW, Garrison EK, Quinlan AR, Stromberg MP, Marth GT (2011) BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics 27(12):1691\u20131692. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/btr174","journal-title":"Bioinformatics"},{"issue":"4","key":"1703_CR18","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30(4):772\u2013780. \n                    https:\/\/doi.org\/10.1093\/molbev\/mst010","journal-title":"Mol Biol Evol"},{"issue":"6","key":"1703_CR19","doi-asserted-by":"publisher","first-page":"1547","DOI":"10.1093\/molbev\/msy096","volume":"35","author":"S Kumar","year":"2018","unstructured":"Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547\u20131549. \n                    https:\/\/doi.org\/10.1093\/molbev\/msy096","journal-title":"Mol Biol Evol"},{"issue":"3\u20134","key":"1703_CR20","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1016\/j.vetmic.2011.11.003","volume":"156","author":"A Marek","year":"2012","unstructured":"Marek A, Nolte V, Schachner A, Berger E, Schlotterer C, Hess M (2012) Two fiber genes of nearly equal lengths are a common and distinctive feature of Fowl adenovirus C members. Vet Microbiol 156(3\u20134):411\u2013417. \n                    https:\/\/doi.org\/10.1016\/j.vetmic.2011.11.003","journal-title":"Vet Microbiol"},{"key":"1703_CR21","unstructured":"Harrach B, Benk\u00f6 M, Both G, Brown M, Davison A, Echavarr\u00eda M, Hess M, Jones M, Kajon A, Lehmkuhl H (2011) Family adenoviridae. Virus taxonomy: classification and nomenclature of viruses. In: Ninth report of the international committee on taxonomy of viruses (2011). Elsevier, San Diego, CA, pp 125\u2013141"},{"issue":"4","key":"1703_CR22","doi-asserted-by":"publisher","first-page":"739","DOI":"10.1099\/jgv.0.000739","volume":"98","author":"B Tan","year":"2017","unstructured":"Tan B, Yang XL, Ge XY, Peng C, Liu HZ, Zhang YZ, Zhang LB, Shi ZL (2017) Novel bat adenoviruses with low G+C content shed new light on the evolution of adenoviruses. J Gen Virol 98(4):739\u2013748. \n                    https:\/\/doi.org\/10.1099\/jgv.0.000739","journal-title":"J Gen Virol"},{"issue":"Pt 7","key":"1703_CR23","doi-asserted-by":"publisher","first-page":"1833","DOI":"10.1099\/0022-1317-81-7-1833","volume":"81","author":"D Ojkic","year":"2000","unstructured":"Ojkic D, Nagy E (2000) The complete nucleotide sequence of fowl adenovirus type 8. J Gen Virol 81(Pt 7):1833\u20131837. \n                    https:\/\/doi.org\/10.1099\/0022-1317-81-7-1833","journal-title":"J Gen Virol"},{"issue":"2","key":"1703_CR24","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1007\/s11262-007-0194-9","volume":"36","author":"JC Corredor","year":"2008","unstructured":"Corredor JC, Garceac A, Krell PJ, Nagy E (2008) Sequence comparison of the right end of fowl adenovirus genomes. Virus Genes 36(2):331\u2013344. \n                    https:\/\/doi.org\/10.1007\/s11262-007-0194-9","journal-title":"Virus Genes"},{"issue":"Pt 6","key":"1703_CR25","doi-asserted-by":"publisher","first-page":"1260","DOI":"10.1099\/vir.0.030064-0","volume":"92","author":"BD Griffin","year":"2011","unstructured":"Griffin BD, Nagy E (2011) Coding potential and transcript analysis of fowl adenovirus 4: insight into upstream ORFs as common sequence features in adenoviral transcripts. J Gen Virol 92(Pt 6):1260\u20131272. \n                    https:\/\/doi.org\/10.1099\/vir.0.030064-0","journal-title":"J Gen Virol"},{"issue":"1\u20132","key":"1703_CR26","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1016\/j.vetmic.2013.05.017","volume":"166","author":"A Marek","year":"2013","unstructured":"Marek A, Kosiol C, Harrach B, Kajan GL, Schlotterer C, Hess M (2013) The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus. Vet Microbiol 166(1\u20132):250\u2013256. \n                    https:\/\/doi.org\/10.1016\/j.vetmic.2013.05.017","journal-title":"Vet Microbiol"},{"issue":"2","key":"1703_CR27","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1006\/viro.2000.0890","volume":"283","author":"D Ojkic","year":"2001","unstructured":"Ojkic D, Nagy E (2001) The long repeat region is dispensable for fowl adenovirus replication in vitro. Virology 283(2):197\u2013206. \n                    https:\/\/doi.org\/10.1006\/viro.2000.0890","journal-title":"Virology"},{"key":"1703_CR28","first-page":"83","volume":"19","author":"S Hagiwara","year":"1988","unstructured":"Hagiwara S (1988) Wild plants for winter foods in Grus monacha & G. vipio in Izumi, Japan (studies of the Cranes in Izumi, Kagoshima, Japan. 13). Misc Rep Natl Park Nat Stud 19:83\u201397 (in Japanese)","journal-title":"Misc Rep Natl Park Nat Stud"},{"key":"1703_CR29","unstructured":"Board of Education in Kagoshima Prefecture (1995) Research report on the long-term crane protective measures investigation studies, 1994 fiscal year (in Japanese)"},{"key":"1703_CR30","unstructured":"Board of Education in Kagoshima Prefecture (1996) Research report on the long-term crane protective measures investigation studies, 1995 fiscal year (in Japanese)"},{"issue":"8","key":"1703_CR31","doi-asserted-by":"publisher","first-page":"2630","DOI":"10.3382\/ps\/pex087","volume":"96","author":"PH Li","year":"2017","unstructured":"Li PH, Zheng PP, Zhang TF, Wen GY, Shao HB, Luo QP (2017) Fowl adenovirus serotype 4: epidemiology, pathogenesis, diagnostic detection, and vaccine strategies. Poult Sci 96(8):2630\u20132640. \n                    https:\/\/doi.org\/10.3382\/ps\/pex087","journal-title":"Poult Sci"}],"container-title":["Virus Genes"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11262-019-01703-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11262-019-01703-w\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11262-019-01703-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,9,21]],"date-time":"2020-09-21T23:13:16Z","timestamp":1600729996000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11262-019-01703-w"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,9,23]]},"references-count":31,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2019,12]]}},"alternative-id":["1703"],"URL":"https:\/\/doi.org\/10.1007\/s11262-019-01703-w","relation":{},"ISSN":["0920-8569","1572-994X"],"issn-type":[{"value":"0920-8569","type":"print"},{"value":"1572-994X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,9,23]]},"assertion":[{"value":"12 April 2019","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 August 2019","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 September 2019","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 September 2019","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no conflicts of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"This article does not contain any studies with human participants or animals, performed by any of the authors.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Research involving human participants and\/or animals"}},{"value":"Informed consent concerns are not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Informed consent"}}]}}