{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,3]],"date-time":"2026-06-03T17:12:50Z","timestamp":1780506770091,"version":"3.54.1"},"reference-count":108,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"name":"General Direction of Research and Technologies Development"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["World J Microbiol Biotechnol"],"published-print":{"date-parts":[[2025,10]]},"DOI":"10.1007\/s11274-025-04629-8","type":"journal-article","created":{"date-parts":[[2025,10,14]],"date-time":"2025-10-14T11:16:36Z","timestamp":1760440596000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Bacillus paralicheniformis strain H12 from saline soil for the management of gray mold in cherry tomatoes"],"prefix":"10.1007","volume":"41","author":[{"given":"Amina","family":"Ghozlani","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fatma","family":"Driss","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Duong Huy","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanane","family":"Boumerdassi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fairouz","family":"El Aichar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lydia Ne\u00efla","family":"Djouadi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pedro H.","family":"Oliveira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie-Laure","family":"Fardeau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nathalie","family":"Pradel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Souad","family":"Rouis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olfa","family":"Frikha-Gargouri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Farida","family":"Nateche","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,10,14]]},"reference":[{"key":"4629_CR1","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1007\/s00253-011-3453-6","volume":"92","author":"A Abderrahmani","year":"2011","unstructured":"Abderrahmani A, Tapi A, Nateche F, Chollet M, Lecl\u00e8re V, Wathelet B, Hacene H, Jacques P (2011) Bioinformatics and molecular approaches to detect NRPS genes involved in the biosynthesis of Kurstakin from Bacillus thuringiensis. Appl Microbiol Biotechnol 92:571\u2013581. https:\/\/doi.org\/10.1007\/s00253-011-3453-6","journal-title":"Appl Microbiol Biotechnol"},{"key":"4629_CR2","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/B978-0-12-819304-4.00003-8","volume-title":"Natural Remedies for Pest, Disease and Weed Control","author":"Y Abubakar","year":"2020","unstructured":"Abubakar Y, Tijjani H, Egbuna C, Adetunji CO, Kala S, Kryeziu TL, Ifemeje JC, Patrick-Iwuanyanwu KC (2020) Pesticides, History, and Classification. Natural Remedies for Pest, Disease and Weed Control. Elsevier, pp 29\u201342. https:\/\/doi.org\/10.1016\/B978-0-12-819304-4.00003-8"},{"key":"4629_CR3","doi-asserted-by":"publisher","unstructured":"Abuhena Md, Zhakypbek Y, Yerlan U, Aben A, Kamarkhan Z, Allakhverdiev SI, Assemgul SK, Al Rashid J, Dilshad Karim Md, Kuanysh TT, Belkozhayev AM, Kossalbayev BD (2024) An overview of Bacillus species in agriculture for growth Promotion, biocontrol and dry tolerance.\u00a0ES Food Agrofor.\u00a0https:\/\/doi.org\/10.30919\/esfaf1321","DOI":"10.30919\/esfaf1321"},{"issue":"1","key":"4629_CR4","doi-asserted-by":"publisher","first-page":"e0210363","DOI":"10.1371\/journal.pone.0210363","volume":"14","author":"Y Agers\u00f8","year":"2019","unstructured":"Agers\u00f8 Y, Bjerre K, Brockmann E, Johansen E, Nielsen B, Siezen R et al (2019) Putative antibiotic resistance genes present in extant Bacillus licheniformis and Bacillus paralicheniformis strains are probably intrinsic and part of the ancient resistome. PLoS ONE 14(1):e0210363. https:\/\/doi.org\/10.1371\/journal.pone.0210363","journal-title":"PLoS ONE"},{"key":"4629_CR5","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1007\/s00284-019-01855-w","volume":"77","author":"A Ait Kaki","year":"2020","unstructured":"Ait Kaki A, Smargiasso N, Ongena M, Kara Ali M, Moula N, De Pauw E, Kacem Chaouche N (2020) Characterization of new Fengycin cyclic lipopeptide variants produced by Bacillus amyloliquefaciens (ET) originating from a salt lake of Eastern Algeria. Curr Microbiol 77:443\u2013451. https:\/\/doi.org\/10.1007\/s00284-019-01855-w","journal-title":"Curr Microbiol"},{"key":"4629_CR6","doi-asserted-by":"publisher","unstructured":"Ajuna HB, Lim HI, Moon JH, Won SJ, Choub V, Choi SI, Ahn YS (2024) The prospect of antimicrobial peptides from Bacillus species with biological control potential against insect pests and diseases of economic importance in agriculture, forestry and fruit tree production. Biotechnol Biotechnol Equip 38(1). https:\/\/doi.org\/10.1080\/13102818.2024.2312115","DOI":"10.1080\/13102818.2024.2312115"},{"key":"4629_CR7","doi-asserted-by":"publisher","unstructured":"Ajuna HB, Lim H-I, Moon J-H, Won S-J, Choub V, Choi S-I, Yun J-Y, Ahn YS (2023) The Prospect of Hydrolytic Enzymes from Bacillus Species in the Biological Control of Pests and Diseases in Forest and Fruit Tree Production. IJMS 24, 16889. https:\/\/doi.org\/10.3390\/ijms242316889","DOI":"10.3390\/ijms242316889"},{"key":"4629_CR8","doi-asserted-by":"publisher","first-page":"577","DOI":"10.1139\/W08-043","volume":"54","author":"G Aktuganov","year":"2008","unstructured":"Aktuganov G, Melentjev A, Galimzianova N, Khalikova E, Korpela T, Susi P (2008) Wide-range antifungal antagonism of Paenibacillus ehimensis IB-X-b and its dependence on chitinase and \u03b2-1,3-glucanase production. Can J Microbiol 54:577\u2013587. https:\/\/doi.org\/10.1139\/W08-043","journal-title":"Can J Microbiol"},{"issue":"D1","key":"4629_CR9","doi-asserted-by":"publisher","first-page":"D690","DOI":"10.1093\/nar\/gkac920","volume":"51","author":"BP Alcock","year":"2023","unstructured":"Alcock BP, Huynh W, Chalil R, Smith K W, Raphenya A R et al (2023) CARD 2023: expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database. Nucleic Acids Res 51(D1):D690\u2013D699. https:\/\/doi.org\/10.1093\/nar\/gkac920","journal-title":"Nucleic Acids Res"},{"key":"4629_CR10","volume-title":"Metarhizium anisopliae","author":"S Ali","year":"2009","unstructured":"Ali S, Huang Z, Ren SX, Bashir M, Afzal M, Tong L (2009) Production and extraction of extracellular lipase from entomopathogenic fungus. Metarhizium anisopliae. Hypocreales, Clavicipitaceae"},{"key":"4629_CR11","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2021\/6611657","volume":"2021","author":"N Allioui","year":"2021","unstructured":"Allioui N, Driss F, Dhouib H, Jlail L, Tounsi S, Frikha-Gargouri O (2021) Two novel Bacillus strains (subtilis and simplex species) with promising potential for the biocontrol of zymoseptoria tritici, the causal agent of septoria tritici blotch of wheat. BioMed Res Int 2021:1\u201310. https:\/\/doi.org\/10.1155\/2021\/6611657","journal-title":"BioMed Res Int"},{"key":"4629_CR12","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1007\/s00284-016-1171-0","volume":"74","author":"M Amziane","year":"2017","unstructured":"Amziane M, Darenfed-Bouanane A, Abderrahmani A, Selama O, Jouadi L, Cayol J-L, Nateche F, Fardeau M-L (2017) Virgibacillus ainsalahensis sp. nov., a moderately halophilic bacterium isolated from sediment of a saline lake in South of Algeria. Curr Microbiol 74:219\u2013223. https:\/\/doi.org\/10.1007\/s00284-016-1171-0","journal-title":"Curr Microbiol"},{"key":"4629_CR13","unstructured":"Andrews S (2010) A quality control tool for high throughput sequence data. http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/. Acessed on Apr 2025"},{"issue":"1","key":"4629_CR14","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1038\/s41522-023-00418-z","volume":"9","author":"LL Angelini","year":"2023","unstructured":"Angelini LL, Dos Santos RAC, Fox G, Paruthiyil S, Gozzi K, Shemesh M, Chai Y (2023) Pulcherrimin protects Bacillus subtilis against oxidative stress during biofilm development. NPJ Biofilms Microbiomes 9(1):50. https:\/\/doi.org\/10.1038\/s41522-023-00418-z","journal-title":"NPJ Biofilms Microbiomes"},{"key":"4629_CR15","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1093\/ajcp\/45.4_ts.493","volume":"45","author":"AW Bauer","year":"1966","unstructured":"Bauer AW, Kirby WMM, Sherris JC, Turck M (1966) Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45:493\u2013496. https:\/\/doi.org\/10.1093\/ajcp\/45.4_ts.493","journal-title":"Am J Clin Pathol"},{"key":"4629_CR16","unstructured":"Bautista JR, Teves FG (2013) Antibiotic susceptibility testing of isolated Bacillus thuringiensis from three soil types around Iligan City, Philippines"},{"issue":"2","key":"4629_CR17","first-page":"502","volume":"38","author":"YAN Bing","year":"2022","unstructured":"Bing YAN, G, Chunmei DU (2022) Review on secondary antibiotic metabolites of Bacillus velezensis. Chin J Biol Control 38(2):502","journal-title":"Chin J Biol Control"},{"key":"4629_CR18","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaf334","author":"K Blin","year":"2025","unstructured":"Blin K, Shaw S, Vader L, Szenei J, Reitz ZL, Augustijn HE, Cediel-Becerra JDD et al (2025) AntiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation. Nucleic Acids Res. https:\/\/doi.org\/10.1093\/nar\/gkaf334","journal-title":"Nucleic Acids Res"},{"key":"4629_CR19","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics 30:2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"key":"4629_CR20","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10091759","volume":"10","author":"A Bonaterra","year":"2022","unstructured":"Bonaterra A, Badosa E, Daranas N, Franc\u00e9s J, Rosell\u00f3 G, Montesinos E (2022) Bacteria as biological control agents of plant diseases. Microorganisms 10:1759. https:\/\/doi.org\/10.3390\/microorganisms10091759","journal-title":"Microorganisms"},{"key":"4629_CR21","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1007\/s10526-017-9851-7","volume":"63","author":"Y Bouaoud","year":"2018","unstructured":"Bouaoud Y, Troulet C, Foughalia A, Berge O, Aissat K, Bardin M (2018) A multi-criteria approach for the selection of efficient biocontrol agents against botrytis cinerea on tomato in Algeria. Biocontrol 63:299\u2013311. https:\/\/doi.org\/10.1007\/s10526-017-9851-7","journal-title":"Biocontrol"},{"issue":"3","key":"4629_CR22","doi-asserted-by":"publisher","first-page":"892","DOI":"10.3390\/microbiolres14030062","volume":"14","author":"S Boulahouat","year":"2023","unstructured":"Boulahouat S, Cherif-Silini H, Silini A, Bouket AC, Luptakova L, Alenezi F, N, Belbahri L (2023) Biocontrol efficiency of rhizospheric Bacillus against the plant pathogen Fusarium oxysporum: A promising approach for sustainable agriculture. Microbiol Res 14(3):892\u2013908. https:\/\/doi.org\/10.3390\/microbiolres14030062","journal-title":"Microbiol Res"},{"key":"4629_CR23","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1136\/jcp.23.2.172","volume":"23","author":"MRW Brown","year":"1970","unstructured":"Brown MRW, Foster JHS (1970) A simple diagnostic milk medium for Pseudomonas aeruginosa. J Clin Pathol 23:172\u2013177. https:\/\/doi.org\/10.1136\/jcp.23.2.172","journal-title":"J Clin Pathol"},{"key":"4629_CR24","doi-asserted-by":"publisher","first-page":"104568","DOI":"10.1016\/j.biocontrol.2021.104568","volume":"157","author":"S Bu","year":"2021","unstructured":"Bu S, Munir S, He Pengfei, Li Y, Wu Y, Li X, Kong B, He Pengbo, He Y (2021) Bacillus subtilis L1-21 as a biocontrol agent for postharvest Gray mold of tomato caused by Botrytis cinerea. Biol Control 157:104568. https:\/\/doi.org\/10.1016\/j.biocontrol.2021.104568","journal-title":"Biol Control"},{"key":"4629_CR25","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2315310121","author":"NP Buijs","year":"2024","unstructured":"Buijs NP, Vlaming HC, Kotsogianni I, Arts M, Willemse J, Duan Y, Alexander FM, Cochrane SA, Schneider T, Martin NI (2024) A classic antibiotic reimagined: rationally designed bacitracin variants exhibit potent activity against vancomycin-resistant pathogens. Proc Natl Acad Sci U S A. https:\/\/doi.org\/10.1073\/pnas.2315310121","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"12","key":"4629_CR26","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11122948","volume":"11","author":"X Cha","year":"2023","unstructured":"Cha X, Lin Y, Brennan C, Cao J, Shang Y (2023) Antibiotic resistance of Bacillus cereus in plant foods and edible wild mushrooms in a province. Microorganisms 11(12):2948. https:\/\/doi.org\/10.3390\/microorganisms11122948","journal-title":"Microorganisms"},{"issue":"4","key":"4629_CR27","first-page":"2591","volume":"132","author":"K Chakraborty","year":"2022","unstructured":"Chakraborty K et al (2022) Bactericidal activity of bacillibactin against multidrug-resistant pathogens. J Appl Microbiol 132(4):2591\u20132603","journal-title":"J Appl Microbiol"},{"key":"4629_CR28","doi-asserted-by":"publisher","unstructured":"Chandwani S, Dewala S, Chavan SM, Paul D, Pachaiappan R, Gopi M, Amaresan N (2023) Complete genome sequencing of Bacillus subtilis (CWTS 5), a siderophore-producing bacterium triggers antagonistic potential against Ralstonia solanacearum. J Appl Microbiol. https:\/\/doi.org\/10.1093\/jambio\/lxad066","DOI":"10.1093\/jambio\/lxad066"},{"key":"4629_CR29","doi-asserted-by":"publisher","first-page":"111389","DOI":"10.1016\/j.postharvbio.2020.111389","volume":"172","author":"M Chaouachi","year":"2021","unstructured":"Chaouachi M, Marzouk T, Jallouli S, Elkahoui S, Gentzbittel L, Ben C, Dj\u00e9bali N (2021) Activity assessment of tomato endophytic bacteria bioactive compounds for the postharvest biocontrol of Botrytis cinerea. Postharvest Biol Technol 172:111389. https:\/\/doi.org\/10.1016\/j.postharvbio.2020.111389","journal-title":"Postharvest Biol Technol"},{"key":"4629_CR30","doi-asserted-by":"publisher","DOI":"10.1016\/j.biocontrol.2020.104419","volume":"151","author":"K Chen","year":"2020","unstructured":"Chen K, Tian Z, He H, Long C, Jiang F (2020) Bacillus species as potential biocontrol agents against citrus diseases. Biol Control 151:104419. https:\/\/doi.org\/10.1016\/j.biocontrol.2020.104419","journal-title":"Biol Control"},{"issue":"8","key":"4629_CR31","doi-asserted-by":"publisher","first-page":"1203","DOI":"10.1038\/s41592-023-01940-w","volume":"20","author":"A Chklovski","year":"2023","unstructured":"Chklovski A, Parks DH, Woodcroft BJ, Tyson GW (2023) CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20(8):1203\u20131212. https:\/\/doi.org\/10.1038\/s41592-023-01940-w","journal-title":"Nat Methods"},{"key":"4629_CR32","unstructured":"Clinical and Laboratory Standards Institute (CLSI) (2024) Performance Standards for Antimicrobial Susceptibility Testing. 34th Edition, CLSI"},{"key":"4629_CR33","doi-asserted-by":"publisher","first-page":"9997","DOI":"10.1021\/acs.langmuir.7b01827","volume":"33","author":"JR Coronel","year":"2017","unstructured":"Coronel JR, Marqu\u00e9s A, Manresa \u00c1, Aranda FJ, Teruel JA, Ortiz A (2017) Interaction of the lipopeptide biosurfactant Lichenysin with phosphatidylcholine model membranes. Langmuir 33:9997\u201310005. https:\/\/doi.org\/10.1021\/acs.langmuir.7b01827","journal-title":"Langmuir"},{"key":"4629_CR34","doi-asserted-by":"publisher","first-page":"e00190","DOI":"10.1128\/genomeA.00190-18","volume":"6","author":"MS Daas","year":"2018","unstructured":"Daas MS, Rosana ARR, Acedo JZ, Douzane M, Nateche F, Kebbouche-Gana S, Vederas JC (2018) Draft genome sequence of Bacillus paralicheniformis F47, isolated from an Algerian salty lake. Genome Announc 6:e00190\u2013e00118. https:\/\/doi.org\/10.1128\/genomeA.00190-18","journal-title":"Genome Announc"},{"key":"4629_CR35","doi-asserted-by":"publisher","DOI":"10.3390\/fermentation11030142","volume":"11","author":"F Demirg\u00fcl","year":"2025","unstructured":"Demirg\u00fcl F, Kaya H\u0130, Ucar RA, Mitaf NA, \u015eim\u015fek \u00d6 (2025) Expanding layers of bacteriocin applications: from food preservation to human health interventions. Fermentation 11:142. https:\/\/doi.org\/10.3390\/fermentation11030142","journal-title":"Fermentation"},{"key":"4629_CR36","doi-asserted-by":"publisher","first-page":"201","DOI":"10.3390\/ijpb13030018","volume":"13","author":"RGC Diabankana","year":"2022","unstructured":"Diabankana RGC, Shulga EU, Validov SZ, Afordoanyi DM (2022) Genetic characteristics and enzymatic activities of Bacillus velezensis KS04AU as a stable biocontrol agent against phytopathogens. IJPB 13:201\u2013222. https:\/\/doi.org\/10.3390\/ijpb13030018","journal-title":"IJPB"},{"key":"4629_CR37","doi-asserted-by":"publisher","DOI":"10.1128\/msphere.00376-21","author":"A Dimopoulou","year":"2021","unstructured":"Dimopoulou A, Theologidis I, Benaki D, Koukounia M, Zervakou A, Tzima A, Diallinas G, Hatzinikolaou DG, Skandalis N (2021) Direct antibiotic activity of bacillibactin broadens the biocontrol range of Bacillus amyloliquefaciens MBI600. mSphere. https:\/\/doi.org\/10.1128\/msphere.00376-21","journal-title":"mSphere"},{"key":"4629_CR38","doi-asserted-by":"publisher","first-page":"1206","DOI":"10.1002\/ps.7850","volume":"80","author":"VN Dinango","year":"2024","unstructured":"Dinango VN, Dhouib H, Wakam LN, Kouokap LK, Youmbi DY, Eke P, Driss F, Tounsi S, Boyom FF, Frikha-Gargouri O (2024) Bacterial endophytes inhabiting desert plants provide protection against seed rot caused by Fusarium verticillioides and promote growth in maize. Pest Manag Sci 80:1206\u20131218. https:\/\/doi.org\/10.1002\/ps.7850","journal-title":"Pest Manag Sci"},{"key":"4629_CR39","doi-asserted-by":"publisher","first-page":"100562","DOI":"10.1016\/j.rhisph.2022.100562","volume":"23","author":"VN Dinango","year":"2022","unstructured":"Dinango VN, Eke P, Youmbi DY, Kepngop Kouokap LR, Toghueo Kouipou RM, Tamghe GG, Nguemnang Mabou LC, Wakam LN, Boyom FF (2022) Endophytic bacteria derived from the desert-spurge (Euphorbia antiquorum L.) suppress Fusarium verticillioides, the causative agent of maize ear and root rot. Rhizosphere 23:100562. https:\/\/doi.org\/10.1016\/j.rhisph.2022.100562","journal-title":"Rhizosphere"},{"key":"4629_CR40","doi-asserted-by":"publisher","first-page":"945","DOI":"10.1111\/j.1365-2672.2005.02639.x","volume":"99","author":"F Driss","year":"2005","unstructured":"Driss F, Kallassy-Awad M, Zouari N, Jaoua S (2005) Molecular characterization of a novel chitinase from Bacillus thuringiensis subsp. kurstaki. J Appl Microbiol 99:945\u2013953. https:\/\/doi.org\/10.1111\/j.1365-2672.2005.02639.x","journal-title":"J Appl Microbiol"},{"key":"4629_CR41","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.000441","author":"CA Dunlap","year":"2015","unstructured":"Dunlap CA, Kwon SW, Rooney AP, Kim SJ (2015) Bacillus paralicheniformis sp. nov., isolated from fermented soybean paste. Int J Syst Evol Microbiol. https:\/\/doi.org\/10.1099\/ijsem.0.000441","journal-title":"Int J Syst Evol Microbiol"},{"issue":"3","key":"4629_CR42","doi-asserted-by":"publisher","first-page":"1825","DOI":"10.1111\/jam.15355","volume":"132","author":"F El Aichar","year":"2022","unstructured":"El Aichar F, Muras A, Parga A, Otero A, Nateche F (2022) Quorum quenching and anti-biofilm activities of halotolerant Bacillus strains isolated in different environments in Algeria. J Appl Microbiol 132(3):1825\u20131839. https:\/\/doi.org\/10.1111\/jam.15355","journal-title":"J Appl Microbiol"},{"key":"4629_CR43","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1007\/s00284-020-02329-0","volume":"78","author":"B Essghaier","year":"2021","unstructured":"Essghaier B, Zouaoui M, Najjari A, Sadfi N (2021) Potentialities and characterization of an antifungal chitinase produced by a halotolerant Bacillus licheniformis. Curr Microbiol 78:513\u2013521. https:\/\/doi.org\/10.1007\/s00284-020-02329-0","journal-title":"Curr Microbiol"},{"key":"4629_CR44","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-022-14864-w","volume":"12","author":"F Etminani","year":"2022","unstructured":"Etminani F, Harighi B, Mozafari AA (2022) Effect of volatile compounds produced by endophytic bacteria on virulence traits of grapevine crown gall pathogen, Agrobacterium tumefaciens. Sci Rep 12:10510. https:\/\/doi.org\/10.1038\/s41598-022-14864-w","journal-title":"Sci Rep"},{"key":"4629_CR45","unstructured":"European Committee on Antimicrobial Susceptibility Testing (2024) EUCAST-CASFM"},{"key":"4629_CR46","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-019-1632-2","volume":"19","author":"G Fiedler","year":"2019","unstructured":"Fiedler G, Schneider C, Igbinosa EO et al (2019) Antibiotics resistance and toxin profiles of Bacillus cereus-group isolates from fresh vegetables from German retail markets. BMC Microbiol 19:250. https:\/\/doi.org\/10.1186\/s12866-019-1632-2","journal-title":"BMC Microbiol"},{"key":"4629_CR47","doi-asserted-by":"publisher","first-page":"1522136","DOI":"10.3389\/fmicb.2025.1522136","volume":"16","author":"JEF Figueiredo","year":"2025","unstructured":"Figueiredo JEF, Diniz GFD, Marins MS, Silva FC, Ribeiro VP, Lanza FE (2025) Oliveira-Paiva CAd and Cruz-Magalh\u00e3es V Bacillus velezensis CNPMS-22 as biocontrol agent of pathogenic fungi and plant growth promoter. Front. Microbiol 16:1522136. https:\/\/doi.org\/10.3389\/fmicb.2025.1522136","journal-title":"Front. Microbiol"},{"key":"4629_CR48","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1016\/j.jbiotec.2018.07.044","volume":"285","author":"D Fira","year":"2018","unstructured":"Fira D, Dimki\u0107 I, Beri\u0107 T, Lozo J, Stankovi\u0107 S (2018) Biological control of plant pathogens by Bacillus species. J Biotechnol 285:44\u201355. https:\/\/doi.org\/10.1016\/j.jbiotec.2018.07.044","journal-title":"J Biotechnol"},{"key":"4629_CR49","doi-asserted-by":"publisher","first-page":"1659","DOI":"10.1039\/d0np00097c","volume":"38","author":"L Franz","year":"2021","unstructured":"Franz L, Kazmaier U, Truman AW, Koehnke J (2021) Bottromycins - biosynthesis, synthesis and activity. Nat Prod Rep 38:1659\u20131683. https:\/\/doi.org\/10.1039\/d0np00097c","journal-title":"Nat Prod Rep"},{"key":"4629_CR50","doi-asserted-by":"publisher","first-page":"408","DOI":"10.1038\/nchembio.2007.5","volume":"3","author":"J Gershenzon","year":"2007","unstructured":"Gershenzon J, Dudareva N (2007) The function of terpene natural products in the natural world. Nat Chem Biol 3:408\u2013414. https:\/\/doi.org\/10.1038\/nchembio.2007.5","journal-title":"Nat Chem Biol"},{"key":"4629_CR51","doi-asserted-by":"publisher","first-page":"994","DOI":"10.1111\/jam.15290","volume":"132","author":"MM Gerst","year":"2022","unstructured":"Gerst MM, Somogyi \u00c1, Yang X, Yousef AE (2022) Detection and characterization of a rare two-component lantibiotic, Amyloliquecidin GF610 produced by Bacillus velezensis, using a combination of culture, molecular and bioinformatic analyses. J Appl Microbiol 132:994\u20131007. https:\/\/doi.org\/10.1111\/jam.15290","journal-title":"J Appl Microbiol"},{"key":"4629_CR52","doi-asserted-by":"publisher","first-page":"79","DOI":"10.1016\/j.micres.2014.11.004","volume":"172","author":"SK Gond","year":"2015","unstructured":"Gond SK, Bergen MS, Torres MS, White JF Jr (2015) Endophytic Bacillus spp. produce antifungal lipopeptides and induce host defence gene expression in maize. Microbiol Res 172:79\u201387. https:\/\/doi.org\/10.1016\/j.micres.2014.11.004","journal-title":"Microbiol Res"},{"key":"4629_CR53","doi-asserted-by":"publisher","first-page":"W484","DOI":"10.1093\/nar\/gkad326","volume":"51","author":"JR Grant","year":"2023","unstructured":"Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen C, Graham M, Van Domselaar G, Stothard P (2023) Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res 51:W484\u2013W492. https:\/\/doi.org\/10.1093\/nar\/gkad326","journal-title":"Nucleic Acids Res"},{"key":"4629_CR54","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2021.125595","volume":"415","author":"Y Guo","year":"2021","unstructured":"Guo Y, Qiu T, Gao M, Sun Y, Cheng S, Gao H, Wang X (2021) Diversity and abundance of antibiotic resistance genes in rhizosphere soil and endophytes of leafy vegetables: focusing on the effect of the vegetable species. J Hazard Mater 415:125595. https:\/\/doi.org\/10.1016\/j.jhazmat.2021.125595","journal-title":"J Hazard Mater"},{"key":"4629_CR55","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","volume":"29","author":"A Gurevich","year":"2013","unstructured":"Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072\u20131075. https:\/\/doi.org\/10.1093\/bioinformatics\/btt086","journal-title":"Bioinformatics"},{"key":"4629_CR56","doi-asserted-by":"publisher","DOI":"10.3390\/toxins11050295","volume":"11","author":"A Hanif","year":"2019","unstructured":"Hanif A, Zhang F, Li P, Li C, Xu Y, Zubair M, Zhang M, Jia D, Zhao X, Liang J, Majid T, Yan J, Farzand A, Wu H, Gu Q, Gao X (2019) Fengycin produced by Bacillus amyloliquefaciens FZB42 inhibits Fusarium graminearum growth and mycotoxins biosynthesis. Toxins 11:295. https:\/\/doi.org\/10.3390\/toxins11050295","journal-title":"Toxins"},{"key":"4629_CR57","doi-asserted-by":"publisher","first-page":"5814","DOI":"10.1128\/aem.00639-06","volume":"72","author":"I Holtsmark","year":"2006","unstructured":"Holtsmark I, Mantzilas D, Eijsink VGH, Brurberg MB (2006) Purification, characterization, and gene sequence of Michiganin A, an Actagardine-like lantibiotic produced by the tomato pathogen Clavibacter michiganensis subsp. michiganensis. Appl Environ Microbiol 72:5814\u20135821. https:\/\/doi.org\/10.1128\/aem.00639-06","journal-title":"Appl Environ Microbiol"},{"key":"4629_CR58","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1093\/fqsafe\/fyy016","volume":"2","author":"L Hua","year":"2018","unstructured":"Hua L, Yong C, Zhanquan Z, Boqiang L, Guozheng Q, Shiping T (2018) Pathogenic mechanisms and control strategies of Botrytis cinerea causing post-harvest decay in fruits and vegetables. Food Qual Saf 2:111\u2013119. https:\/\/doi.org\/10.1093\/fqsafe\/fyy016","journal-title":"Food Qual Saf"},{"key":"4629_CR59","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00069","volume":"7","author":"K Kilcullen","year":"2016","unstructured":"Kilcullen K, Teunis A, Popova TG, Popov SG (2016) Cytotoxic potential of Bacillus cereus strains ATCC 11778 and 14579 against human lung epithelial cells under microaerobic growth conditions. Front Microbiol 7:69. https:\/\/doi.org\/10.3389\/fmicb.2016.00069","journal-title":"Front Microbiol"},{"key":"4629_CR60","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10122494","volume":"10","author":"S-H Kim","year":"2022","unstructured":"Kim S-H, Yehuala GA, Bang WY, Yang J, Jung YH, Park M-K (2022) Safety evaluation of Bacillus subtilis IDCC1101, newly isolated from Cheonggukjang, for industrial applications. Microorganisms 10:2494. https:\/\/doi.org\/10.3390\/microorganisms10122494","journal-title":"Microorganisms"},{"key":"4629_CR61","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2019.00845","volume":"10","author":"J K\u00f6hl","year":"2019","unstructured":"K\u00f6hl J, Kolnaar R, Ravensberg WJ (2019) Mode of action of microbial biological control agents against plant diseases: relevance beyond efficacy. Front Plant Sci 10:845. https:\/\/doi.org\/10.3389\/fpls.2019.00845","journal-title":"Front Plant Sci"},{"issue":"3","key":"4629_CR62","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10030596","volume":"10","author":"R Lahlali","year":"2022","unstructured":"Lahlali R, Ezrari S, Radouane N, Kenfaoui J, Esmaeel Q, El Hamss H, Belabess Z, Barka EA (2022) Biological control of plant pathogens: a global perspective. Microorganisms 10(3):596. https:\/\/doi.org\/10.3390\/microorganisms10030596","journal-title":"Microorganisms"},{"key":"4629_CR63","doi-asserted-by":"publisher","first-page":"488","DOI":"10.5423\/ppj.oa.04.2017.0073","volume":"33","author":"SM Lim","year":"2017","unstructured":"Lim SM, Yoon M, Choi GJ, Choi YH, Jang KS, Shin TS, Park HW, Yu NH, Kim YH, Kim JC (2017) Diffusible and volatile antifungal compounds produced by an antagonistic Bacillus velezensis G341 against various phytopathogenic fungi. Plant Pathol J 33:488\u2013498. https:\/\/doi.org\/10.5423\/ppj.oa.04.2017.0073","journal-title":"Plant Pathol J"},{"issue":"D1","key":"4629_CR64","doi-asserted-by":"publisher","first-page":"D687","DOI":"10.1093\/nar\/gky1080","volume":"47","author":"B Liu","year":"2019","unstructured":"Liu B, Zheng D, Jin Q, Chen L, Yang J (2019) VFDB 2019: a comparative pathogenomic platform with an interactive web interface. Nucleic Acids Res 47(D1):D687\u2013D692. https:\/\/doi.org\/10.1093\/nar\/gky1080","journal-title":"Nucleic Acids Res"},{"key":"4629_CR65","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1159\/000323501","volume":"20","author":"J Liu","year":"2011","unstructured":"Liu J, Zhou T, He D, Li X, Wu H, Liu W, Gao X (2011) Functions of lipopeptides bacillomycin D and fengycin in antagonism of Bacillus amyloliquefaciens C06 towards Monilinia fructicola. Microb Physiol 20:43\u201352. https:\/\/doi.org\/10.1159\/000323501","journal-title":"Microb Physiol"},{"key":"4629_CR66","doi-asserted-by":"publisher","first-page":"7209","DOI":"10.1074\/jbc.m009140200","volume":"276","author":"JJ May","year":"2001","unstructured":"May JJ, Wendrich TM, Marahiel MA (2001) The dhb operon of Bacillus subtilis encodes the biosynthetic template for the catecholic siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin. J Biol Chem 276:7209\u20137217. https:\/\/doi.org\/10.1074\/jbc.m009140200","journal-title":"J Biol Chem"},{"key":"4629_CR67","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms8071037","volume":"8","author":"D Miljakovi\u0107","year":"2020","unstructured":"Miljakovi\u0107 D, Marinkovi\u0107 J, Bale\u0161evi\u0107-Tubi\u0107 S (2020) The significance of Bacillus spp. in disease suppression and growth promotion of field and vegetable crops. Microorganisms 8:1037. https:\/\/doi.org\/10.3390\/microorganisms8071037","journal-title":"Microorganisms"},{"issue":"1","key":"4629_CR68","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1016\/s0162-0134(02)00464-6","volume":"91","author":"LJ Ming","year":"2002","unstructured":"Ming LJ, Epperson JD (2002) Metal binding and structure-activity relationship of the metalloantibiotic peptide bacitracin. J Inorg Biochem 91(1):46\u201358. https:\/\/doi.org\/10.1016\/s0162-0134(02)00464-6","journal-title":"J Inorg Biochem"},{"key":"4629_CR69","doi-asserted-by":"publisher","first-page":"1511","DOI":"10.3390\/microbiolres14040103","volume":"14","author":"LR Morales-Cede\u00f1o","year":"2023","unstructured":"Morales-Cede\u00f1o LR, Barajas-Barrera IA, Parra-Cota FI, Valenzuela-Ruiz V, De Los Santos-Villalobos S, Loeza-Lara PD, Herrera-P\u00e9rez A, Del Carmen Orozco-Mosqueda M, Santoyo G (2023) Evaluation of biocontrol potential of Bacillus spp. and Pseudomonas fluorescens UM270 against postharvest fungal pathogens. Microbiol Res 14:1511\u20131523. https:\/\/doi.org\/10.3390\/microbiolres14040103","journal-title":"Microbiol Res"},{"key":"4629_CR70","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1007\/s10123-021-00185-x","volume":"24","author":"F Nas","year":"2021","unstructured":"Nas F, Aissaoui N, Mahjoubi M, Mosbah A, Arab M, Abdelwahed S, Khrouf R, Masmoudi AS, Cherif A, Klouche-Khelil N (2021) A comparative GC\u2013MS analysis of bioactive secondary metabolites produced by halotolerant Bacillus spp. isolated from the Great Sebkha of Oran. Int Microbiol 24:455\u2013470. https:\/\/doi.org\/10.1007\/s10123-021-00185-x","journal-title":"Int Microbiol"},{"key":"4629_CR71","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1016\/j.tim.2007.12.009","volume":"16","author":"M Ongena","year":"2008","unstructured":"Ongena M, Jacques P (2008) Bacillus lipopeptides: versatile weapons for plant disease biocontrol. Trends Microbiol 16:115\u2013125. https:\/\/doi.org\/10.1016\/j.tim.2007.12.009","journal-title":"Trends Microbiol"},{"key":"4629_CR72","doi-asserted-by":"publisher","first-page":"1084","DOI":"10.1111\/j.1462-2920.2006.01202.x","volume":"9","author":"M Ongena","year":"2007","unstructured":"Ongena M, Jourdan E, Adam A, Paquot M, Brans A, Joris B, Arpigny J, Thonart P (2007) Surfactin and fengycin lipopeptides of Bacillus subtilis as elicitors of induced systemic resistance in plants. Environ Microbiol 9:1084\u20131090. https:\/\/doi.org\/10.1111\/j.1462-2920.2006.01202.x","journal-title":"Environ Microbiol"},{"key":"4629_CR73","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1016\/j.micres.2016.06.002","volume":"192","author":"JM Palazzini","year":"2016","unstructured":"Palazzini JM, Dunlap CA, Bowman MJ, Chulze SN (2016) Bacillus velezensis RC 218 as a biocontrol agent to reduce fusarium head blight and deoxynivalenol accumulation: genome sequencing and secondary metabolite cluster profiles. Microbiol Res 192:30\u201336. https:\/\/doi.org\/10.1016\/j.micres.2016.06.002","journal-title":"Microbiol Res"},{"key":"4629_CR74","doi-asserted-by":"publisher","first-page":"102680","DOI":"10.1016\/j.hal.2024.1026804","volume":"137","author":"Y Park","year":"2024","unstructured":"Park Y, Kim W, Cha Y, Kim M, Park W (2024) Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of microcystis aeruginosa. Harmful Algae 137:102680. https:\/\/doi.org\/10.1016\/j.hal.2024.1026804","journal-title":"Harmful Algae"},{"issue":"3","key":"4629_CR75","doi-asserted-by":"publisher","DOI":"10.3390\/foods14030485","volume":"14","author":"J Pheepakpraw","year":"2025","unstructured":"Pheepakpraw J, Sinchao C, Sutheeworapong S, Sattayawat P, Panya A, Tragoolpua Y, Chitov T (2025) Cytotoxicity and genome characteristics of an emetic toxin-producing Bacillus cereus group sp. isolated from raw milk. Foods 14(3):485. https:\/\/doi.org\/10.3390\/foods14030485","journal-title":"Foods"},{"key":"4629_CR76","volume-title":"RStudio: integrated development for R","author":"RStudio","year":"2015","unstructured":"R Studio Team (2015) RStudio: integrated development for R. PBC, Boston, MA, USA. http:\/\/www.rstudio.com\/. Accessed on 17 Dec 2022"},{"issue":"12","key":"4629_CR77","doi-asserted-by":"publisher","first-page":"3863","DOI":"10.1128\/jb.175.12.3863-3875.1993","volume":"175","author":"MC Renna","year":"1993","unstructured":"Renna MC, Najimudin N, Winik L, R, Zahler SA (1993) Regulation of the Bacillus subtilis alsS, alsD, and alsR genes involved in post-exponential-phase production of acetoin. J Bacteriol 175(12):3863\u20133875. https:\/\/doi.org\/10.1128\/jb.175.12.3863-3875.1993","journal-title":"J Bacteriol"},{"key":"4629_CR78","doi-asserted-by":"publisher","first-page":"19126","DOI":"10.1073\/pnas.0906412106","volume":"106","author":"M Richter","year":"2009","unstructured":"Richter M, Rossell\u00f3-M\u00f3ra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106:19126\u201319131","journal-title":"Proc Natl Acad Sci U S A"},{"key":"4629_CR79","doi-asserted-by":"publisher","first-page":"929","DOI":"10.1093\/bioinformatics\/btv681","volume":"32","author":"M Richter","year":"2016","unstructured":"Richter M, Rossell\u00f3-M\u00f3ra R, Oliver Gl\u00f6ckner F, Peplies J (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929\u2013931","journal-title":"Bioinformatics"},{"key":"4629_CR80","doi-asserted-by":"publisher","first-page":"22121","DOI":"10.1021\/acsami.7b03348","volume":"9","author":"A Ruiz","year":"2017","unstructured":"Ruiz A, Pinazo A, P\u00e9rez L, Manresa A, Marqu\u00e9s AM (2017) Green catanionic gemini surfactant\u2013Lichenysin mixture: improved surface, antimicrobial, and physiological properties. ACS Appl Mater Interfaces 9:22121\u201322131. https:\/\/doi.org\/10.1021\/acsami.7b03348","journal-title":"ACS Appl Mater Interfaces"},{"issue":"10","key":"4629_CR81","doi-asserted-by":"publisher","first-page":"884","DOI":"10.3390\/pathogens13100884","volume":"13","author":"SJ Sabin","year":"2024","unstructured":"Sabin SJ, Beesley CA, Marston CK, Paisie T, K, Gulvik CA, Sprenger GA, Gee JE, Traxler RM, Bell ME, McQuiston JR, Weiner Z. P (2024) Investigating Anthrax-Associated virulence genes among archival and contemporary Bacillus cereus group genomes. Pathogens 13(10):884. https:\/\/doi.org\/10.3390\/pathogens13100884","journal-title":"Pathogens"},{"key":"4629_CR82","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1111\/jph.12718","volume":"166","author":"R Salvatierra-Martinez","year":"2018","unstructured":"Salvatierra-Martinez R, Arancibia W, Araya M, Aguilera S, Olalde V, Bravo J, Stoll A (2018) Colonization ability as an indicator of enhanced biocontrol capacity\u2014An example using two Bacillus amyloliquefaciens strains and Botrytis cinerea infection of tomatoes. J Phytopathol 166:601\u2013612. https:\/\/doi.org\/10.1111\/jph.12718","journal-title":"J Phytopathol"},{"key":"4629_CR83","doi-asserted-by":"publisher","first-page":"47","DOI":"10.3126\/jist.v24i1.24628","volume":"24","author":"S Sapkota","year":"2019","unstructured":"Sapkota S, Khadka S, Gautam A, Maharjan R, Shah R, Dhakal S, Panta OP, Khanal S, Poudel P (2019) Screening and Optimization of Thermo-Tolerant Bacillus Sp. For Amylase Production and Antifungal Activity. J Inst Sci Tech 24:47\u201356. https:\/\/doi.org\/10.3126\/jist.v24i1.24628","journal-title":"J Inst Sci Tech"},{"key":"4629_CR84","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","volume":"30","author":"T Seemann","year":"2014","unstructured":"Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068\u20132069. https:\/\/doi.org\/10.1093\/bioinformatics\/btu153","journal-title":"Bioinformatics"},{"key":"4629_CR85","doi-asserted-by":"publisher","first-page":"93","DOI":"10.3390\/toxins16020093","volume":"16","author":"MG Shehata","year":"2024","unstructured":"Shehata MG, Alsulami T, El-Aziz NMA, Abd-Rabou HS, El Sohaimy SA, Darwish AMG, Hoppe K, Ali HS, Badr AN (2024) Biopreservative and Anti-Mycotoxigenic potentials of Lactobacillus paracasei MG847589 and its bacteriocin in soft white cheese. Toxins 16:93. https:\/\/doi.org\/10.3390\/toxins16020093","journal-title":"Toxins"},{"key":"4629_CR86","unstructured":"Shehata MG, Badr AN, Sohaimy SAE (2018) Novel antifungal bacteriocin from Lactobacillus paracasei KC39 with anti-mycotoxigenic properties. 15"},{"key":"4629_CR87","doi-asserted-by":"publisher","first-page":"20929","DOI":"10.1038\/s41598-023-48171-9","volume":"13","author":"Y Shen","year":"2023","unstructured":"Shen Y, Shi Z, Zhao J et al (2023) Whole genome sequencing provides evidence for Bacillus velezensis SH-1471 as a beneficial rhizosphere bacterium in plants. Sci Rep 13:20929. https:\/\/doi.org\/10.1038\/s41598-023-48171-9","journal-title":"Sci Rep"},{"key":"4629_CR88","doi-asserted-by":"publisher","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","volume":"31","author":"FA Sim\u00e3o","year":"2015","unstructured":"Sim\u00e3o FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31:3210\u20133212. https:\/\/doi.org\/10.1093\/bioinformatics\/btv351","journal-title":"Bioinformatics"},{"key":"4629_CR89","doi-asserted-by":"publisher","DOI":"10.1111\/mpp.13404","author":"R Singh","year":"2024","unstructured":"Singh R, Caseys C, Kliebenstein DJ (2024) Genetic and molecular landscapes of the generalist phytopathogen botrytis cinerea. Mol Plant Pathol. https:\/\/doi.org\/10.1111\/mpp.13404","journal-title":"Mol Plant Pathol"},{"key":"4629_CR90","doi-asserted-by":"publisher","first-page":"127535","DOI":"10.1016\/j.micres.2023.127535","volume":"278","author":"XY Sun","year":"2024","unstructured":"Sun XY, Deng J, Zhang C et al (2024) Superoxide dismutase A (SodA) is a c-di-GMP effector protein governing oxidative stress tolerance in Stenotrophomonas maltophilia. Microbiol Res 278:127535. https:\/\/doi.org\/10.1016\/j.micres.2023.127535","journal-title":"Microbiol Res"},{"key":"4629_CR91","doi-asserted-by":"publisher","first-page":"1963","DOI":"10.1016\/j.bpj.2022.04.006","volume":"121","author":"S Sur","year":"2022","unstructured":"Sur S, Grossfield A (2022) Effects of cholesterol on the mechanism of fengycin, a biofungicide. Biophys J 121:1963\u20131974. https:\/\/doi.org\/10.1016\/j.bpj.2022.04.006","journal-title":"Biophys J"},{"key":"4629_CR92","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/j.biortech.2003.10.013","volume":"93","author":"XJ Tang","year":"2004","unstructured":"Tang XJ, He GQ, Chen QH, Zhang XY, Ali MAM (2004) Medium optimization for the production of thermal stable \u03b2-glucanase by Bacillus subtilis ZJF-1A5 using response surface methodology. Bioresour Technol 93:175\u2013181. https:\/\/doi.org\/10.1016\/j.biortech.2003.10.013","journal-title":"Bioresour Technol"},{"key":"4629_CR93","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1007\/s12275-011-0171-9","volume":"49","author":"Y Tao","year":"2011","unstructured":"Tao Y, Bie X, Lv F, Zhao H, Lu Z (2011) Antifungal activity and mechanism of Fengycin in the presence and absence of commercial surfactin against Rhizopus stolonifer. J Microbiol 49:146\u2013150. https:\/\/doi.org\/10.1007\/s12275-011-0171-9","journal-title":"J Microbiol"},{"key":"4629_CR94","doi-asserted-by":"publisher","first-page":"W278","DOI":"10.1093\/nar\/gky383","volume":"46","author":"AJ Van Heel","year":"2018","unstructured":"Van Heel AJ, de Jong A, Song C, Viel JH, Kok J, Kuipers OP (2018) BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. Nucleic Acids Res 46:W278\u2013W281. https:\/\/doi.org\/10.1093\/nar\/gky383","journal-title":"Nucleic Acids Res"},{"key":"4629_CR95","doi-asserted-by":"publisher","first-page":"3948","DOI":"10.1128\/aac.02938-15","volume":"60","author":"ADP Van Staden","year":"2016","unstructured":"Van Staden ADP, Heunis T, Smith C, Deane S, Dicks LMT (2016) Efficacy of lantibiotic treatment of Staphylococcus aureus-induced skin infections, monitored by in vivo bioluminescent imaging. Antimicrob Agents Chemother 60:3948\u20133955. https:\/\/doi.org\/10.1128\/aac.02938-15","journal-title":"Antimicrob Agents Chemother"},{"issue":"8","key":"4629_CR96","doi-asserted-by":"publisher","first-page":"1654","DOI":"10.3390\/agronomy14081654","volume":"14","author":"NC Vasques","year":"2024","unstructured":"Vasques NC, Nogueira MA, Hungria M (2024) Increasing application of multifunctional Bacillus for biocontrol of pests and diseases and plant growth promotion: lessons from Brazil. Agronomy 14(8):1654. https:\/\/doi.org\/10.3390\/agronomy14081654","journal-title":"Agronomy"},{"key":"4629_CR97","doi-asserted-by":"publisher","unstructured":"Villarreal-Delgado MF, Villa-Rodr\u00edguez ED, Cira-Ch\u00e1vez LA, Estrada-Alvarado MI, Parra-Cota FI, De Los Santos-Villalobos S (2018) El g\u00e9nero Bacillus como agente de control biol\u00f3gico y sus implicaciones en la bioseguridad agr\u00edcola. RMF 36. https:\/\/doi.org\/10.18781\/R.MEX.FIT.1706-5","DOI":"10.18781\/R.MEX.FIT.1706-5"},{"issue":"12","key":"4629_CR98","doi-asserted-by":"publisher","first-page":"3734","DOI":"10.1128\/AEM.00560-13","volume":"79","author":"HW Wang","year":"2013","unstructured":"Wang HW, Chung CH, Ma TY, Wong HC (2013) Roles of alkyl hydroperoxide reductase subunit C (AhpC) in viable but nonculturable vibrio parahaemolyticus. Appl Environ Microbiol 79(12):3734\u20133743. https:\/\/doi.org\/10.1128\/AEM.00560-13","journal-title":"Appl Environ Microbiol"},{"key":"4629_CR99","doi-asserted-by":"publisher","unstructured":"Wash P, Batool A, Mulk S, Nazir S, Yasmin H, Mumtaz S, Alyemeni MN, Kaushik P, Hassan MN (2022) Prevalence of Antimicrobial Resistance and Respective Genes among Bacillus spp., a Versatile Bio-Fungicide. IJERPH 19, 14997. https:\/\/doi.org\/10.3390\/ijerph192214997","DOI":"10.3390\/ijerph192214997"},{"key":"4629_CR100","doi-asserted-by":"publisher","DOI":"10.3389\/ffunb.2024.1332755","author":"A Wockenfuss","year":"2024","unstructured":"Wockenfuss A, Chan K, Cooper JG, Chaya T, Mauriello MA, Yannarell SM, Maresca JA, Donofrio NM (2024) A Bacillus velezensis strain shows antimicrobial activity against soilborne and foliar fungi and oomycetes. Front Fungal Biol. https:\/\/doi.org\/10.3389\/ffunb.2024.1332755","journal-title":"Front Fungal Biol"},{"issue":"22","key":"4629_CR102","doi-asserted-by":"publisher","first-page":"5625","DOI":"10.1093\/jxb\/ery326","volume":"69","author":"L Wu","year":"2018","unstructured":"Wu L, Li X, Ma L, Borriss R, Wu Z, Gao X (2018) Acetoin and 2,3-butanediol from Bacillus amyloliquefaciens induce stomatal closure in Arabidopsis Thaliana and Nicotiana benthamiana. J Exp Bot 69(22):5625\u20135635. https:\/\/doi.org\/10.1093\/jxb\/ery326","journal-title":"J Exp Bot"},{"key":"4629_CR103","doi-asserted-by":"publisher","first-page":"888939","DOI":"10.3389\/fpls.2022.888939","volume":"13","author":"G Xiao","year":"2022","unstructured":"Xiao G, Zhang Q, Zeng X, Chen X, Liu S, Han Y (2022) Deciphering the molecular signatures associated with resistance to Botrytis cinerea in strawberry flower by comparative and dynamic transcriptome Analysis. Front. Plant Sci 13:888939. https:\/\/doi.org\/10.3389\/fpls.2022.888939","journal-title":"Plant Sci"},{"key":"4629_CR104","doi-asserted-by":"publisher","unstructured":"Xin B, Zheng J, Liu H, Li J, Ruan L, Peng D, Sajid M, Sun M (2016) Thusin, a novel Two-Component lantibiotic with potent antimicrobial activity against several Gram-Positive pathogens. Front Microbiol 7. https:\/\/doi.org\/10.3389\/fmicb.2016.01115","DOI":"10.3389\/fmicb.2016.01115"},{"key":"4629_CR105","doi-asserted-by":"publisher","unstructured":"Xu W, Zhang L, Goodwin PH, Xia M, Zhang J, Wang Q, Liang J, Sun R, Wu C, Yang L (2020) Isolation, Identification, and complete genome assembly of an endophytic Bacillus velezensis YB-130, potential biocontrol agent against Fusarium graminearum. Front Microbiol 11. https:\/\/doi.org\/10.3389\/fmicb.2020.598285","DOI":"10.3389\/fmicb.2020.598285"},{"key":"4629_CR106","doi-asserted-by":"publisher","unstructured":"Yang F, Jiang H, Ma K, Wang X, Liang S, Cai Y, Jing Y, Tian B, Shi X (2023) Genome sequencing and analysis of Bacillus velezensis VJH504 reveal biocontrol mechanism against cucumber fusarium wilt. Front Microbiol 14. https:\/\/doi.org\/10.3389\/fmicb.2023.1279695","DOI":"10.3389\/fmicb.2023.1279695"},{"key":"4629_CR107","doi-asserted-by":"publisher","DOI":"10.1016\/j.micres.2023.127569","volume":"280","author":"S Yousfi","year":"2024","unstructured":"Yousfi S, Krier F, Deracinois B, Steels S, Coutte F, Frikha-Gargouri O (2024) Characterization of Bacillus velezensis 32a metabolites and their synergistic bioactivity against crown gall disease. Microbiol Res 280:127569","journal-title":"Microbiol Res"},{"key":"4629_CR108","doi-asserted-by":"publisher","first-page":"108475","DOI":"10.1016\/j.foodcont.2021.108475","volume":"131","author":"M Zhao","year":"2022","unstructured":"Zhao M, Liu D, Liang Z, Huang K, Wu X (2022) Antagonistic activity of Bacillus subtilis CW14 and its \u03b2-glucanase against Aspergillus ochraceus. Food Control 131:108475. https:\/\/doi.org\/10.1016\/j.foodcont.2021.108475","journal-title":"Food Control"},{"key":"4629_CR109","doi-asserted-by":"publisher","first-page":"W115","DOI":"10.1093\/nar\/gkad328","volume":"51","author":"J Zheng","year":"2023","unstructured":"Zheng J, Ge Q, Yan Y, Zhang X, Huang L, Yin Y (2023) dbCAN3: automated carbohydrate-active enzyme and substrate annotation. Nucleic Acids Res 51:W115\u2013W121. https:\/\/doi.org\/10.1093\/nar\/gkad328","journal-title":"Nucleic Acids Res"}],"container-title":["World Journal of Microbiology and Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11274-025-04629-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11274-025-04629-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11274-025-04629-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,22]],"date-time":"2025-11-22T06:31:59Z","timestamp":1763793119000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11274-025-04629-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10]]},"references-count":108,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2025,10]]}},"alternative-id":["4629"],"URL":"https:\/\/doi.org\/10.1007\/s11274-025-04629-8","relation":{},"ISSN":["0959-3993","1573-0972"],"issn-type":[{"value":"0959-3993","type":"print"},{"value":"1573-0972","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,10]]},"assertion":[{"value":"17 July 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 October 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 October 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"386"}}