{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T22:39:01Z","timestamp":1792535941716,"version":"4.5.0"},"reference-count":68,"publisher":"Springer Science and Business Media LLC","issue":"11","license":[{"start":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T00:00:00Z","timestamp":1792454400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T00:00:00Z","timestamp":1792454400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"name":"Robert S. McNamara Fellowships Program"},{"DOI":"10.13039\/501100003593","name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","doi-asserted-by":"publisher","award":["152719\/2024-5"],"award-info":[{"award-number":["152719\/2024-5"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004901","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","doi-asserted-by":"publisher","award":["CAG 03787\/18"],"award-info":[{"award-number":["CAG 03787\/18"]}],"id":[{"id":"10.13039\/501100004901","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Universidade Federal De Lavras"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["World J Microbiol Biotechnol"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Maize-soybean succession dominates grain production in tropical Brazil, and rotation is often recommended to improve soil health. However, few field studies have followed both soil bacterial diversity and fumonisin-producing pathogens over several seasons in tropical no-till systems. We compared continuous maize, continuous soybean and maize\u2013soybean rotation for three seasons (2016\u20132017 to 2018\u20132019). In a fourth season (2019\u20132020), maize was grown in all plots to test legacy effects. Bacterial communities were profiled by 16\u00a0S rRNA (V3-V4) amplicon sequencing. The fum1 gene of fumonisin-producing\n                    <jats:italic>Fusarium<\/jats:italic>\n                    spp. was quantified by qPCR in soil and in maize stalks left on the soil surface. In the first three seasons, rotation did not detectably increase bacterial diversity, although statistical power was low (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u20094 plots; post-hoc power 12\u201361%). Community composition differed among seasons and was associated with antecedent precipitation as Actinobacteria were most abundant in the driest season. In the fourth season, a continuous-soybean history was associated with higher bacterial richness and Shannon diversity in the maize rhizosphere at tasselling than a rotation history, whereas bulk-soil diversity did not differ among land uses. A rotation history was associated with lower fum1 abundance in bulk soil. In contrast, continuous maize was associated with lower fum1 in stalks (third season), less stalk rot and fewer infected grains. Soil and crop residues therefore responded differently to rotation. Given the single site and limited plot-level replication, these findings should be regarded as hypothesis-generating.\n                  <\/jats:p>","DOI":"10.1007\/s11274-026-05358-2","type":"journal-article","created":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T09:12:57Z","timestamp":1792487577000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Effects of a three-year maize-soybean rotation on soil bacterial diversity and fumonisin-producing Fusarium spp. inoculum potential"],"prefix":"10.1007","volume":"42","author":[{"given":"Kize Alves","family":"Almeida","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rafaela Ara\u00fajo","family":"Guimar\u00e3es","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Victor Biazzotto Correia","family":"Porto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luiz Fl\u00e1vio Machado","family":"G\u00f3es","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fatima Maria Souza","family":"de Moreira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John","family":"Quensen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"Tiedje","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fl\u00e1vio Henrique Vasconcelos","family":"de Medeiros","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,10,20]]},"reference":[{"key":"5358_CR1","doi-asserted-by":"publisher","first-page":"834","DOI":"10.1111\/ele.12469","volume":"18","author":"E Allan","year":"2015","unstructured":"Allan E, Manning P, Alt F, Binkenstein J, Blaser S, Bl\u00fcthgen N, B\u00f6hm S, Grassein F, H\u00f6lzel N, Klaus VH et al (2015) Land use intensification alters ecosystem multifunctionality via loss of biodiversity and changes to functional composition. Ecol Lett 18:834\u2013843. https:\/\/doi.org\/10.1111\/ele.12469","journal-title":"Ecol Lett"},{"key":"5358_CR2","doi-asserted-by":"publisher","first-page":"711","DOI":"10.1127\/0941-2948\/2013\/0507","volume":"22","author":"CA de Alvares","year":"2013","unstructured":"Alvares CA, Stape JL, Sentelhas PC, de Moraes Gon\u00e7alves JL, Sparovek G (2013) K\u00f6ppen\u2019s climate classification map for Brazil. Meteorol Z 22:711\u2013728. https:\/\/doi.org\/10.1127\/0941-2948\/2013\/0507","journal-title":"Meteorol Z"},{"key":"5358_CR3","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1038\/s41564-022-01226-9","volume":"8","author":"S van der Banerjee","year":"2023","unstructured":"Banerjee S, Walder F, B\u00fcchi L, Meyer M, Held A, Gattinger A, Keller T, Charles R, van der Heijden MGA (2023) Soil biodiversity and microbiome functions change with organic matter composition and farming practices. Nat Microbiol 8:95\u2013107. https:\/\/doi.org\/10.1038\/s41564-022-01226-9","journal-title":"Nat Microbiol"},{"key":"5358_CR4","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1146\/annurev-ecolsys-021123-040712","volume":"55","author":"RD van der Bardgett","year":"2024","unstructured":"Bardgett RD, van der Putten WH (2024) Linking aboveground and belowground communities to ecosystem function. Annu Rev Ecol Evol Syst 55:45\u201367. https:\/\/doi.org\/10.1146\/annurev-ecolsys-021123-040712","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"5358_CR5","doi-asserted-by":"publisher","first-page":"108309","DOI":"10.1016\/j.soilbio.2021.108309","volume":"159","author":"M-S Benitez","year":"2021","unstructured":"Benitez M-S, Ewing PM, Osborne SL, Lehman RM (2021) Rhizosphere microbial communities explain positive effects of diverse crop rotations on maize and soybean performance. Soil Biol Biochem 159:108309. https:\/\/doi.org\/10.1016\/j.soilbio.2021.108309","journal-title":"Soil Biol Biochem"},{"key":"5358_CR6","doi-asserted-by":"publisher","first-page":"15709","DOI":"10.1038\/s41598-017-15955-9","volume":"7","author":"MS Benitez","year":"2017","unstructured":"Benitez MS, Osborne SL, Lehman RM (2017) Previous crop and rotation history effects on maize seedling health and associated rhizosphere microbiome. Sci Rep 7:15709. https:\/\/doi.org\/10.1038\/s41598-017-15955-9","journal-title":"Sci Rep"},{"key":"5358_CR7","doi-asserted-by":"publisher","first-page":"e9593","DOI":"10.7717\/peerj.9593","volume":"8","author":"L Beule","year":"2020","unstructured":"Beule L, Karlovsky P (2020) Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities. PeerJ 8:e9593. https:\/\/doi.org\/10.7717\/peerj.9593","journal-title":"PeerJ"},{"key":"5358_CR8","doi-asserted-by":"publisher","first-page":"312","DOI":"10.1094\/PHYTO-06-17-0203-RVW","volume":"108","author":"AA Blacutt","year":"2018","unstructured":"Blacutt AA, Gold SE, Voss KA, Gao M, Glenn AE (2018) Fusarium verticillioides: Advancements in understanding the toxicity, virulence, and niche adaptations of a model mycotoxigenic pathogen of maize. Phytopathology 108:312\u2013326. https:\/\/doi.org\/10.1094\/PHYTO-06-17-0203-RVW","journal-title":"Phytopathology"},{"key":"5358_CR9","doi-asserted-by":"publisher","first-page":"852","DOI":"10.1038\/s41587-019-0209-9","volume":"37","author":"E Bolyen","year":"2019","unstructured":"Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F et al (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852\u2013857. https:\/\/doi.org\/10.1038\/s41587-019-0209-9","journal-title":"Nat Biotechnol"},{"key":"5358_CR10","doi-asserted-by":"publisher","first-page":"107295","DOI":"10.1016\/j.agee.2021.107295","volume":"310","author":"K Borrelli","year":"2021","unstructured":"Borrelli K, Koide RT, McCormick MK (2021) Crop rotation influences the structure of the rhizosphere fungal community. Agric Ecosyst Environ 310:107295. https:\/\/doi.org\/10.1016\/j.agee.2021.107295","journal-title":"Agric Ecosyst Environ"},{"key":"5358_CR11","unstructured":"Brasil (2009) Manual de an\u00e1lise sanit\u00e1ria de sementes. Minist\u00e9rio da Agricultura, Pecu\u00e1ria e Abastecimento, Secretaria de Defesa Agropecu\u00e1ria, Bras\u00edlia"},{"key":"5358_CR12","doi-asserted-by":"publisher","first-page":"4522","DOI":"10.1128\/AEM.00149-06","volume":"72","author":"DH Buckley","year":"2006","unstructured":"Buckley DH, Huangyutitham V, Nelson TA, Rumberger A, Thies JE (2006) Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity. Appl Environ Microbiol 72:4522\u20134531. https:\/\/doi.org\/10.1128\/AEM.00149-06","journal-title":"Appl Environ Microbiol"},{"key":"5358_CR13","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1038\/nmeth.3869","volume":"13","author":"BJ Callahan","year":"2016","unstructured":"Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. https:\/\/doi.org\/10.1038\/nmeth.3869","journal-title":"Nat Methods"},{"key":"5358_CR14","doi-asserted-by":"publisher","first-page":"107748","DOI":"10.1016\/j.soilbio.2020.107748","volume":"143","author":"LA Chamberlain","year":"2020","unstructured":"Chamberlain LA, Buckley DH, Walter MT (2020) Denitrifier community structure is unaffected by cropping system in a corn-soybean rotation. Soil Biol Biochem 143:107748. https:\/\/doi.org\/10.1016\/j.soilbio.2020.107748","journal-title":"Soil Biol Biochem"},{"key":"5358_CR15","unstructured":"Companhia Nacional de Abastecimento (CONAB) (2025) 11\u00ba Levantamento da safra de gr\u00e3os 2024\/25. CONAB, Bras\u00edlia. https:\/\/www.conab.gov.br. Accessed 14 Aug 2025"},{"key":"5358_CR16","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1071\/SR18345","volume":"57","author":"RS Davey","year":"2019","unstructured":"Davey RS, McNeill AM, Barnett SJ, Gupta VVSR (2019) Organic matter input influences incidence of root rot caused by Rhizoctonia solani AG8 and microorganisms associated with plant root disease suppression in three Australian agricultural soils. Soil Res 57:321\u2013332. https:\/\/doi.org\/10.1071\/SR18345","journal-title":"Soil Res"},{"key":"5358_CR19","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1126\/science.aaz5192","volume":"368","author":"FT de Vries","year":"2020","unstructured":"de Vries FT, Griffiths RI, Knight CG, Nicolitch O, Williams A (2020) Harnessing rhizosphere microbiomes for drought-resilient crop production. Science 368:270\u2013274. https:\/\/doi.org\/10.1126\/science.aaz5192","journal-title":"Science"},{"key":"5358_CR17","doi-asserted-by":"publisher","first-page":"6295","DOI":"10.1128\/AEM.05005-11","volume":"77","author":"JM De Bruyn","year":"2011","unstructured":"De Bruyn JM, Nixon LT, Fawaz MN, Johnson AM, Radosevich M (2011) Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil. Appl Environ Microbiol 77:6295\u20136300. https:\/\/doi.org\/10.1128\/AEM.05005-11","journal-title":"Appl Environ Microbiol"},{"key":"5358_CR18","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1007\/s10705-010-9360-x","volume":"88","author":"PC de Faccio Carvalho","year":"2010","unstructured":"de Faccio Carvalho PC, Anghinoni I, de Moraes A, de Souza ED, Sulc RM, Lang CR, Flores JPC, Terra Leal Filho JC, Paula Lopes ML, da Silva JHS et al (2010) Managing grazing animals to achieve nutrient cycling and soil improvement in no-till integrated systems. Nutr Cycl Agroecosyst 88:259\u2013273","journal-title":"Nutr Cycl Agroecosyst"},{"key":"5358_CR20","doi-asserted-by":"publisher","first-page":"108925","DOI":"10.1016\/j.soilbio.2023.108925","volume":"178","author":"Z Du","year":"2023","unstructured":"Du Z, Xu M, Cong W, Wei D, Xu M (2023) Tillage and residue management shape microbial communities and functions in soils under continuous maize cropping. Soil Biol Biochem 178:108925. https:\/\/doi.org\/10.1016\/j.soilbio.2023.108925","journal-title":"Soil Biol Biochem"},{"key":"5358_CR21","doi-asserted-by":"publisher","first-page":"1499","DOI":"10.1038\/ismej.2012.3","volume":"6","author":"S Freitas","year":"2012","unstructured":"Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DBM, Sogin ML, Martiny AC (2012) Global distribution and diversity of marine Verrucomicrobia. ISME J 6:1499\u20131505. https:\/\/doi.org\/10.1038\/ismej.2012.3","journal-title":"ISME J"},{"key":"5358_CR22","doi-asserted-by":"publisher","first-page":"1535734","DOI":"10.3389\/fsoil.2025.1535734","volume":"5","author":"TS Frey","year":"2025","unstructured":"Frey TS, Shah DA, Lindsey LE, Sprunger C, Lopez-Nicora HD, Benitez Ponce MS (2025) Crop rotation and a rye cover crop have minor impacts on soil health, microbial communities, and soybean yield in Ohio. Front Soil Sci 5:1535734. https:\/\/doi.org\/10.3389\/fsoil.2025.1535734","journal-title":"Front Soil Sci"},{"key":"5358_CR23","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1146\/annurev.phyto.42.012604.135455","volume":"42","author":"P van Garbeva","year":"2004","unstructured":"Garbeva P, van Veen JA, van Elsas JD (2004) Microbial diversity in soil: Selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annu Rev Phytopathol 42:243\u2013270. https:\/\/doi.org\/10.1146\/annurev.phyto.42.012604.135455","journal-title":"Annu Rev Phytopathol"},{"key":"5358_CR24","doi-asserted-by":"publisher","DOI":"10.1007\/s42729-026-03473-5","author":"A Gryta","year":"2026","unstructured":"Gryta A, Panek J, Siegieda D, Oszust K, Pertile G, M\u0105cik M, Bogu\u017eas V, Kriau\u010di\u016bnien\u0117 Z, Kuzyakov Y, Weber J, Fr\u0105c M (2026) Soil microbiome changes under long-term rye and maize monocropping systems, crop rotation and bare fallow under different fertilization variants. J Soil Sci Plant Nutr. https:\/\/doi.org\/10.1007\/s42729-026-03473-5","journal-title":"J Soil Sci Plant Nutr"},{"key":"5358_CR25","doi-asserted-by":"publisher","first-page":"6841","DOI":"10.1007\/s00344-024-11500-x","volume":"44","author":"S Gupta","year":"2025","unstructured":"Gupta S, Sinha S, Bhar A (2025) Harnessing belowground interaction: re-analyzing the role of rhizosphere microbiome in plant\u2013pathogen interaction under water stress. J Plant Growth Regul 44:6841\u20136862. https:\/\/doi.org\/10.1007\/s00344-024-11500-x","journal-title":"J Plant Growth Regul"},{"key":"5358_CR26","doi-asserted-by":"publisher","unstructured":"Ho A, Di Lonardo DP, Bodelier PLE (2017) Revisiting life strategy concepts in environmental microbial ecology. FEMS Microbiol Ecol 93:fix006. https:\/\/doi.org\/10.1093\/femsec\/fix006","DOI":"10.1093\/femsec\/fix006"},{"key":"5358_CR27","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1590\/1234-56781806-947900570202","volume":"57","author":"OS Junior","year":"2019","unstructured":"Junior OS, Centelhas FG (2019) Soybean and maize production in Brazil: Economic importance and territorial expansion. Rev Econ Sociol Rural 57:203\u2013222. https:\/\/doi.org\/10.1590\/1234-56781806-947900570202","journal-title":"Rev Econ Sociol Rural"},{"key":"5358_CR28","doi-asserted-by":"publisher","first-page":"1968","DOI":"10.3390\/microorganisms13091968","volume":"13","author":"FH Khan","year":"2025","unstructured":"Khan FH, Tie Z, Zhang X, Ma Y, Yu Y, Zhao S, Zhang X, Xi H (2025) Short-term maize rotation suppresses Verticillium wilt and restructures soil microbiomes in Xinjiang cotton fields. Microorganisms 13:1968. https:\/\/doi.org\/10.3390\/microorganisms13091968","journal-title":"Microorganisms"},{"key":"5358_CR29","doi-asserted-by":"publisher","first-page":"e1","DOI":"10.1093\/nar\/gks808","volume":"41","author":"A Klindworth","year":"2013","unstructured":"Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Gl\u00f6ckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1. https:\/\/doi.org\/10.1093\/nar\/gks808","journal-title":"Nucleic Acids Res"},{"key":"5358_CR30","doi-asserted-by":"publisher","first-page":"845","DOI":"10.3389\/fpls.2019.00845","volume":"10","author":"J Kohl","year":"2019","unstructured":"Kohl J, Kolnaar R, Ravensberg WJ (2019) Mode of action of microbial biological control agents against plant diseases: Relevance beyond efficacy. Front Plant Sci 10:845","journal-title":"Front Plant Sci"},{"key":"5358_CR31","doi-asserted-by":"publisher","first-page":"198","DOI":"10.2134\/agronj2002.1980","volume":"94","author":"JM Krupinsky","year":"2002","unstructured":"Krupinsky JM, Bailey KL, McMullen MP, Gossen BD, Turkington TK (2002) Managing plant disease risk in diversified cropping systems. Agron J 94:198\u2013209","journal-title":"Agron J"},{"key":"5358_CR32","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1186\/s40168-019-0677-7","volume":"7","author":"EN Kudjordjie","year":"2019","unstructured":"Kudjordjie EN, Sapkota R, Steffensen SK, Fomsgaard IS, Nicolaisen M (2019) Maize synthesized benzoxazinoids affect the host associated microbiome. Microbiome 7:59. https:\/\/doi.org\/10.1186\/s40168-019-0677-7","journal-title":"Microbiome"},{"key":"5358_CR33","doi-asserted-by":"publisher","first-page":"123A","DOI":"10.2489\/jswc.2020.0620A","volume":"75","author":"R Lal","year":"2020","unstructured":"Lal R (2020) Regenerative agriculture for food and climate. J Soil Water Conserv 75:123A\u2013124A. https:\/\/doi.org\/10.2489\/jswc.2020.0620A","journal-title":"J Soil Water Conserv"},{"key":"5358_CR34","doi-asserted-by":"publisher","first-page":"232","DOI":"10.1016\/j.cropro.2014.08.003","volume":"65","author":"FE da Lanza","year":"2014","unstructured":"Lanza FE, Zambolim L, da Costa RV, Queiroz VAV, Cota LV, da Silva DD, Casela CR (2014) Prevalence of fumonisin-producing Fusarium species in Brazilian corn grains. Crop Prot 65:232\u2013237. https:\/\/doi.org\/10.1016\/j.cropro.2014.08.003","journal-title":"Crop Prot"},{"key":"5358_CR35","doi-asserted-by":"publisher","first-page":"11686","DOI":"10.1038\/s41467-025-66823-4","volume":"16","author":"C Li","year":"2025","unstructured":"Li C, Shi L, Wang K, Liu B, Liao J, An Z, Chang SX (2025) Crop rotation differentially increases soil bacterial and fungal diversities in global croplands: a meta-analysis. Nat Commun 16:11686. https:\/\/doi.org\/10.1038\/s41467-025-66823-4","journal-title":"Nat Commun"},{"key":"5358_CR37","unstructured":"MapBiomas (2024) Pastagem, soja e cana ocupam 77% da \u00e1rea de agropecu\u00e1ria no Brasil. MapBiomas, S\u00e3o Paulo. https:\/\/brasil.mapbiomas.org. Accessed 6 Dec 2024"},{"key":"5358_CR36","unstructured":"MapBiomas (2023) Annual land use and land cover maps of Brazil. MapBiomas, S\u00e3o Paulo. https:\/\/mapbiomas.org. Accessed 1 May 2025"},{"key":"5358_CR38","doi-asserted-by":"publisher","first-page":"10","DOI":"10.14806\/ej.17.1.200","volume":"17","author":"M Martin","year":"2011","unstructured":"Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 17:10\u201312. https:\/\/doi.org\/10.14806\/ej.17.1.200","journal-title":"EMBnet J"},{"key":"5358_CR39","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1094\/pbiomes-12-16-0019-rvw","volume":"1","author":"P Mart\u00ednez-Hidalgo","year":"2017","unstructured":"Mart\u00ednez-Hidalgo P, Hirsch AM (2017) The nodule microbiome: N2-fixing rhizobia do not live alone. Phytobiomes J 1:70\u201382. https:\/\/doi.org\/10.1094\/pbiomes-12-16-0019-rvw","journal-title":"Phytobiomes J"},{"key":"5358_CR40","doi-asserted-by":"publisher","first-page":"20160026","DOI":"10.1098\/rstb.2016.0026","volume":"371","author":"BA McDonald","year":"2016","unstructured":"McDonald BA, Stukenbrock EH (2016) Rapid emergence of pathogens in agro-ecosystems: Global threats to agricultural sustainability and food security. Philos Trans R Soc B Biol Sci 371:20160026. https:\/\/doi.org\/10.1098\/rstb.2016.0026","journal-title":"Philos Trans R Soc B Biol Sci"},{"key":"5358_CR41","doi-asserted-by":"publisher","first-page":"1577","DOI":"10.1038\/ismej.2014.17","volume":"8","author":"LW van Mendes","year":"2014","unstructured":"Mendes LW, Kuramae EE, Navarrete AA, van Veen JA, Tsai SM (2014) Taxonomical and functional microbial community selection in soybean rhizosphere. ISME J 8:1577\u20131587. https:\/\/doi.org\/10.1038\/ismej.2014.17","journal-title":"ISME J"},{"key":"5358_CR42","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1146\/annurev.phyto.41.052002.095510","volume":"41","author":"GP Munkvold","year":"2003","unstructured":"Munkvold GP (2003) Cultural and genetic approaches to managing mycotoxins in maize. Annu Rev Phytopathol 41:99\u2013116. https:\/\/doi.org\/10.1146\/annurev.phyto.41.052002.095510","journal-title":"Annu Rev Phytopathol"},{"key":"5358_CR43","volume-title":"Compendium of corn diseases","author":"GP Munkvold","year":"2021","unstructured":"Munkvold GP (2021) Fusarium ear rot. Compendium of corn diseases, 4th edn. American Phytopathological Society, St. Paul","edition":"4"},{"key":"5358_CR44","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1146\/annurev-environ-102014-021257","volume":"40","author":"UN Nielsen","year":"2015","unstructured":"Nielsen UN, Wall DH, Six J (2015) Soil biodiversity and the environment. Annu Rev Environ Resour 40:63\u201390. https:\/\/doi.org\/10.1146\/annurev-environ-102014-021257","journal-title":"Annu Rev Environ Resour"},{"key":"5358_CR45","unstructured":"Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin PR, O\u2019Hara RB, Simpson GL, Solymos P et al (2019) vegan: community ecology package. R package version 2.5-6. R Foundation for Statistical Computing, Vienna"},{"key":"5358_CR46","doi-asserted-by":"publisher","first-page":"005056","DOI":"10.1099\/ijsem.0.005056","volume":"71","author":"A Oren","year":"2021","unstructured":"Oren A, Garrity GM (2021) Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol 71:005056. https:\/\/doi.org\/10.1099\/ijsem.0.005056","journal-title":"Int J Syst Evol Microbiol"},{"key":"5358_CR47","doi-asserted-by":"publisher","first-page":"1741","DOI":"10.3389\/fpls.2019.01741","volume":"10","author":"A Pascale","year":"2020","unstructured":"Pascale A, Proietti S, Pantelides IS, Stringlis IA (2020) Modulation of the root microbiome by plant molecules: The basis for targeted disease suppression and plant growth promotion. Front Plant Sci 10:1741. https:\/\/doi.org\/10.3389\/fpls.2019.01741","journal-title":"Front Plant Sci"},{"key":"5358_CR48","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1007\/s10658-016-1127-z","volume":"148","author":"R Pedrozo","year":"2017","unstructured":"Pedrozo R, Little CR (2017) Fusarium verticillioides inoculum potential influences soybean seed quality. Eur J Plant Pathol 148:749\u2013754. https:\/\/doi.org\/10.1007\/s10658-016-1127-z","journal-title":"Eur J Plant Pathol"},{"key":"5358_CR49","doi-asserted-by":"publisher","first-page":"e25177","DOI":"10.4161\/cib.25177","volume":"6","author":"JA Peiffer","year":"2013","unstructured":"Peiffer JA, Ley RE (2013) Exploring the maize rhizosphere microbiome in the field. Commun Integr Biol 6:e25177","journal-title":"Commun Integr Biol"},{"key":"5358_CR50","doi-asserted-by":"publisher","first-page":"e02235","DOI":"10.1002\/ecs2.2235","volume":"9","author":"AL Peralta","year":"2018","unstructured":"Peralta AL, Sun Y, McDaniel MD, Lennon JT (2018) Crop rotational diversity increases disease suppressive capacity of soil microbiomes. Ecosphere 9:e02235. https:\/\/doi.org\/10.1002\/ecs2.2235","journal-title":"Ecosphere"},{"key":"5358_CR51","doi-asserted-by":"publisher","first-page":"4974","DOI":"10.3390\/app12104974","volume":"12","author":"FAMF Pinto","year":"2022","unstructured":"Pinto FAMF, Porto VBC, Guimar\u00e3es RA, Siqueira CDS, Faria MRD, Machado JDC, Medeiros FHVD (2022) Detection and factors that induce Stenocarpella spp. survival in maize stubble and soil suppressiveness under tropical conditions. Appl Sci 12:4974. https:\/\/doi.org\/10.3390\/app12104974","journal-title":"Appl Sci"},{"key":"5358_CR52","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1038\/nature13809","volume":"517","author":"CM van Pittelkow","year":"2015","unstructured":"Pittelkow CM, Liang X, Linquist BA, van Groenigen KJ, Lee J, Lundy ME, van Gestel N, Six J, Venterea RT, van Kessel C (2015) Productivity limits and potentials of the principles of conservation agriculture. Nature 517:365\u2013368. https:\/\/doi.org\/10.1038\/nature13809","journal-title":"Nature"},{"key":"5358_CR53","doi-asserted-by":"publisher","first-page":"2760","DOI":"10.1002\/ecy.1513","volume":"97","author":"T Soares de Carvalho","year":"2016","unstructured":"Soares de Carvalho T, Jesus E, Barlow J, Gardner T, Soares I, Tiedje J, Moreira F (2016) Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria. Ecology 97:2760\u20132771. https:\/\/doi.org\/10.1002\/ecy.1513","journal-title":"Ecology"},{"key":"5358_CR54","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1038\/s41579-022-00695-z","volume":"20","author":"NW Sokol","year":"2022","unstructured":"Sokol NW, Slessarev E, Marschmann GL, Nicolas A, Blazewicz SJ, Brodie EL, Firestone MK, Foley MM, Hestrin R, Hungate BA et al (2022) Life and death in the soil microbiome: How ecological processes influence biogeochemistry. Nat Rev Microbiol 20:415\u2013430. https:\/\/doi.org\/10.1038\/s41579-022-00695-z","journal-title":"Nat Rev Microbiol"},{"key":"5358_CR55","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1590\/S1517-83822013000100012","volume":"44","author":"R dos Stumpf","year":"2013","unstructured":"Stumpf R, dos Santos J, Gomes LB, Silva CN, Tessmann DJ, Ferreira FD, Machinski M, Del Ponte EM (2013) Fusarium species and fumonisins associated with maize kernels produced in Rio Grande do Sul State for the 2008\/09 and 2009\/10 growing seasons. Braz J Microbiol 44:89\u201395. https:\/\/doi.org\/10.1590\/S1517-83822013000100012","journal-title":"Braz J Microbiol"},{"key":"5358_CR56","doi-asserted-by":"publisher","first-page":"6012","DOI":"10.1038\/s41598-020-62919-7","volume":"10","author":"W Tan","year":"2020","unstructured":"Tan W, Wang J, Bai W, Qi J, Chen W (2020) Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems. Sci Rep 10:6012. https:\/\/doi.org\/10.1038\/s41598-020-62919-7","journal-title":"Sci Rep"},{"key":"5358_CR57","doi-asserted-by":"publisher","first-page":"761","DOI":"10.1111\/ele.12453","volume":"18","author":"LK Tiemann","year":"2015","unstructured":"Tiemann LK, Grandy AS, Atkinson EE, Marin-Spiotta E, McDaniel MD (2015) Crop rotational diversity enhances belowground communities and functions in an agroecosystem. Ecol Lett 18:761\u2013771. https:\/\/doi.org\/10.1111\/ele.12453","journal-title":"Ecol Lett"},{"key":"5358_CR58","doi-asserted-by":"publisher","first-page":"973","DOI":"10.1111\/gcb.12752","volume":"21","author":"MA de Tsiafouli","year":"2015","unstructured":"Tsiafouli MA, Th\u00e9bault E, Sgardelis SP, de Ruiter PC, van der Putten WH, Birkhofer K, Hemerik L, de Vries FT, Bardgett RD, Brady MV et al (2015) Intensive agriculture reduces soil biodiversity across Europe. Glob Change Biol 21:973\u2013985. https:\/\/doi.org\/10.1111\/gcb.12752","journal-title":"Glob Change Biol"},{"key":"5358_CR59","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1007\/s13593-016-0385-7","volume":"36","author":"E Vukicevich","year":"2016","unstructured":"Vukicevich E, Lowery T, Bowen P, \u00darbez-Torres JR, Hart M (2016) Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review. Agron Sustain Dev 36:48. https:\/\/doi.org\/10.1007\/s13593-016-0385-7","journal-title":"Agron Sustain Dev"},{"key":"5358_CR60","first-page":"93","volume":"117","author":"C van der Waalwijk","year":"2008","unstructured":"Waalwijk C, van der Heijden H, de Vries I, Hesselink T, Arts J, Kema GHJ (2008) Quantitative detection of Fusarium species in wheat using TaqMan. Eur J Plant Pathol 117:93\u2013103","journal-title":"Eur J Plant Pathol"},{"key":"5358_CR61","doi-asserted-by":"publisher","first-page":"5261","DOI":"10.1128\/AEM.00062-07","volume":"73","author":"Q Wang","year":"2007","unstructured":"Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261\u20135267. https:\/\/doi.org\/10.1128\/AEM.00062-07","journal-title":"Appl Environ Microbiol"},{"key":"5358_CR62","doi-asserted-by":"publisher","unstructured":"Weinstein MM, Prem A, Jin M, Tang S, Bhasin JM (2019) FIGARO: an efficient and objective tool for optimizing microbiome rRNA gene trimming parameters. bioRxiv 610394. https:\/\/doi.org\/10.1101\/610394","DOI":"10.1101\/610394"},{"key":"5358_CR63","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1186\/s40168-017-0237-y","volume":"5","author":"S Weiss","year":"2017","unstructured":"Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, V\u00e1zquez-Baeza Y, Birmingham A, Hyde ER, Knight R (2017) Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5:27. https:\/\/doi.org\/10.1186\/s40168-017-0237-y","journal-title":"Microbiome"},{"key":"5358_CR64","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1186\/s40793-026-00899-3","volume":"21","author":"C Yin","year":"2026","unstructured":"Yin C, Osborne SL, Lehman RM (2026) Legacy effects of cover cropping and crop phase on soybean health and associated rhizosphere microbiome in corn-soybean rotation. Environ Microbiome 21:80. https:\/\/doi.org\/10.1186\/s40793-026-00899-3","journal-title":"Environ Microbiome"},{"key":"5358_CR65","doi-asserted-by":"publisher","first-page":"2905","DOI":"10.1111\/gcb.14630","volume":"25","author":"V Zalles","year":"2019","unstructured":"Zalles V, Hansen MC, Potapov PV, Parker D, Pimm SL, Goldman L, Randriamaherisoa A, Adusei B, Linehan V, Turubanova S et al (2019) Near doubling of Brazil\u2019s intensive row crop area since 2000. Glob Change Biol 25:2905\u20132918. https:\/\/doi.org\/10.1111\/gcb.14630","journal-title":"Glob Change Biol"},{"key":"5358_CR66","doi-asserted-by":"publisher","first-page":"104868","DOI":"10.1016\/j.apsoil.2023.104868","volume":"186","author":"X Zhang","year":"2023","unstructured":"Zhang X, Zhou Y, Liu L, Zhou J (2023) Microbial diversity in response to long-term crop rotation and no-tillage in agroecosystems. Appl Soil Ecol 186:104868. https:\/\/doi.org\/10.1016\/j.apsoil.2023.104868","journal-title":"Appl Soil Ecol"},{"key":"5358_CR67","doi-asserted-by":"publisher","first-page":"1101","DOI":"10.3389\/fmicb.2016.01101","volume":"7","author":"X Zhou","year":"2016","unstructured":"Zhou X, Fornara D, Ikenaga M, Akagi I, Zhang R, Jia Z (2016) The resilience of microbial community under drying and rewetting cycles of three forest soils. Front Microbiol 7:1101. https:\/\/doi.org\/10.3389\/fmicb.2016.01101","journal-title":"Front Microbiol"},{"key":"5358_CR68","first-page":"10","volume":"85","author":"X Zhou","year":"2018","unstructured":"Zhou X, Zhang J, Pan D, Ge X, Jin X, Chen S, Shen D, Wu F (2018) p-Coumaric acid can alter the composition of cucumber rhizosphere microbial communities and inhibit cucumber growth. Eur J Soil Biol 85:10\u201316","journal-title":"Eur J Soil Biol"}],"container-title":["World Journal of Microbiology and Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11274-026-05358-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11274-026-05358-2","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11274-026-05358-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T22:01:51Z","timestamp":1792533711000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11274-026-05358-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,10,20]]},"references-count":68,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2026,11]]}},"alternative-id":["5358"],"URL":"https:\/\/doi.org\/10.1007\/s11274-026-05358-2","relation":{},"ISSN":["1573-0972"],"issn-type":[{"value":"1573-0972","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,10,20]]},"assertion":[{"value":"25 July 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 October 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 October 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Not applicable.","order":1,"name":"Ethics","label":"Ethics statement","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","label":"Consent for publication","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"During the preparation of this work the author(s) used Claude and Skywork in order to improve and edit English. After using this tool\/service, the author(s) reviewed and edited the content as needed and takes full responsibility for the content of the published article.","order":3,"name":"Ethics","label":"Use generative AI or AI-assisted technology","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"616"}}