{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T05:38:29Z","timestamp":1769751509351,"version":"3.49.0"},"reference-count":87,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2019,12,13]],"date-time":"2019-12-13T00:00:00Z","timestamp":1576195200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2019,12,13]],"date-time":"2019-12-13T00:00:00Z","timestamp":1576195200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Environ Sci Pollut Res"],"published-print":{"date-parts":[[2020,1]]},"DOI":"10.1007\/s11356-019-07169-5","type":"journal-article","created":{"date-parts":[[2019,12,13]],"date-time":"2019-12-13T18:03:34Z","timestamp":1576260214000},"page":"2844-2856","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":24,"title":["Antiquorum sensing and antibiofilm potential of biosynthesized silver nanoparticles of Myristica fragrans seed extract against MDR Salmonella enterica serovar Typhi isolates from asymptomatic typhoid carriers and typhoid patients"],"prefix":"10.1007","volume":"27","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4117-9695","authenticated-orcid":false,"given":"Senthilkumar","family":"Balakrishnan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kalibulla Syed","family":"Ibrahim","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Senbagam","family":"Duraisamy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ilakkia","family":"Sivaji","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Selvam","family":"Kandasamy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anbarasu","family":"Kumarasamy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nachimuthu Senthil","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2019,12,13]]},"reference":[{"key":"7169_CR1","doi-asserted-by":"publisher","first-page":"e747","DOI":"10.1016\/j.ijid.2011.06.003","volume":"15","author":"R Abida","year":"2011","unstructured":"Abida R, Yasra S, Aamir A, Amer J, Asma H, Abdul H (2011) Effect of biofilm formation on the excretion of Salmonella enterica serovar Typhi in feces. Int J Infect Dis 15:e747\u2013e752","journal-title":"Int J Infect Dis"},{"issue":"11","key":"7169_CR2","doi-asserted-by":"publisher","first-page":"3243","DOI":"10.1128\/IAI.00532-16","volume":"84","author":"HE Adcox","year":"2016","unstructured":"Adcox HE, Vasicek EM, Dwivedi V, Hoang KV, Turner J, Gunn JS (2016) Salmonella colonization. Infect Immun 84(11):3243\u20133251","journal-title":"Infect Immun"},{"issue":"4","key":"7169_CR3","doi-asserted-by":"publisher","first-page":"305","DOI":"10.1016\/S1413-8670(11)70197-0","volume":"15","author":"H Afreenish","year":"2011","unstructured":"Afreenish H, Javaid U, Fathima K, Maria O, Ali K, Muhammad I (2011) Evaluation of different detection methods of biofilm formation in the clinical isolates. Braz J Infect Dis 15(4):305\u2013311","journal-title":"Braz J Infect Dis"},{"key":"7169_CR4","first-page":"1493","volume":"18","author":"RK Agarwal","year":"2011","unstructured":"Agarwal RK, Singh S, Bhilegaonkar KN, Singh VP (2011) Optimization of microtitre plate assay for the testing of biofilm formation ability in different Salmonella serotypes. Int Food Res J 18:1493\u20131498","journal-title":"Int Food Res J"},{"key":"7169_CR5","doi-asserted-by":"publisher","first-page":"334","DOI":"10.6026\/97320630007334","volume":"7","author":"AA Alshatwi","year":"2011","unstructured":"Alshatwi AA, Hasan TN, Syed NA, Shafi G (2011) Predicting the possibility of two newly isolated phenetheren ring containing compounds from Aristolochia manshuriensis as CDK2 inhibitors. Bioinform 7:334\u2013338","journal-title":"Bioinform"},{"key":"7169_CR6","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"SF Altschul","year":"1997","unstructured":"Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389\u20133402","journal-title":"Nucleic Acids Res"},{"key":"7169_CR7","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1016\/j.micpath.2017.09.041","volume":"112","author":"Ankita Srivastava","year":"2017","unstructured":"Ankita S, Jaya G, Sunil K, Awanish K (2017) Gut biofilm forming bacteria in inflammatory bowel disease. Microb Pathog. https:\/\/doi.org\/10.1016\/j.micpath.2017.09.041","journal-title":"Microbial Pathogenesis"},{"issue":"10","key":"7169_CR8","doi-asserted-by":"publisher","first-page":"769","DOI":"10.1016\/S1995-7645(11)60191-0","volume":"4","author":"C Balaji","year":"2011","unstructured":"Balaji C, Senthilkumar B (2011) Screening, phylogenetic analysis and antibiotic sensitivity pattern of Salmonella enterica serovar Typhi isolates from typhoid asymptomatic carriers. Asian Pac J Trop Med 4(10):769\u2013772","journal-title":"Asian Pac J Trop Med"},{"issue":"4","key":"7169_CR9","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1016\/j.micpath.2007.10.001","volume":"44","author":"BL Bearson","year":"2008","unstructured":"Bearson BL, Bearson SM (2008) The role of the QseC quorum-sensing sensor kinase in colonization and norepinephrine-enhanced motility of Salmonella enterica serovar Typhimurium. Microb Pathog 44(4):271\u2013278","journal-title":"Microb Pathog"},{"key":"7169_CR10","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1021\/cb5007135","volume":"10","author":"AE Bem","year":"2015","unstructured":"Bem AE, Velikova N, Pellicer MT, Pv B, Marina A, Wells JM (2015) Bacterial histidine kinases as novel antibacterial drug targets. ACS Chem Biol 10:213\u2013224","journal-title":"ACS Chem Biol"},{"key":"7169_CR11","doi-asserted-by":"publisher","first-page":"W252","DOI":"10.1093\/nar\/gku340","volume":"42","author":"M Biasini","year":"2014","unstructured":"Biasini M, Bienert S, Waterhouse A, Arnold K, Studer G, Schmidt T, Kiefer F, Cassarino TG, Bertoni M, Bordoli L, Schwede T (2014) SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res 42:W252\u2013W258","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"7169_CR12","doi-asserted-by":"crossref","first-page":"1903","DOI":"10.1016\/S0021-9258(18)94115-3","volume":"264","author":"RG Brennan","year":"1989","unstructured":"Brennan RG, Matthews BW (1989) The helix-turn-helix DNA binding motif. J Biol Chem 264(4):1903\u20131906","journal-title":"J Biol Chem"},{"key":"7169_CR13","doi-asserted-by":"publisher","first-page":"763","DOI":"10.1016\/j.sbi.2010.09.010","volume":"20","author":"P Casino","year":"2010","unstructured":"Casino P, Rubio V, Marina A (2010) The mechanism of signal transduction by two-component systems. Curr Opin Struct Biol 20:763\u2013771","journal-title":"Curr Opin Struct Biol"},{"issue":"10","key":"7169_CR14","doi-asserted-by":"publisher","first-page":"4885","DOI":"10.1128\/IAI.01942-06","volume":"75","author":"J Choi","year":"2007","unstructured":"Choi J, Shin D, Ryu S (2007) Implication of quorum sensing in Salmonella enterica serovar Typhimurium virulence: the luxS gene is necessary for expression of genes in pathogenicity island 1. Infect Immun 75(10):4885\u20134890","journal-title":"Infect Immun"},{"key":"7169_CR15","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1128\/IAI.37.1.318-326.1982","volume":"37","author":"GD Christensen","year":"1982","unstructured":"Christensen GD, Simpson WA, Bisno AL, Beachey EH (1982) Adherence of slime producing strains of Staphylococcus epidermidis to smooth surfaces. Infect Immun 37:318\u2013326","journal-title":"Infect Immun"},{"issue":"6","key":"7169_CR16","doi-asserted-by":"publisher","first-page":"996","DOI":"10.1128\/JCM.22.6.996-1006.1985","volume":"22","author":"GD Christensen","year":"1985","unstructured":"Christensen GD, Simpson WA, Younger JJ, Baddour LM, Barrett FF, Melton DM, Beachey EH (1985) Adherence of coagulase-negative staphylococci to plastic tissue culture plates: a quantitative model for the adherence of staphylococci to medical devices. J Clin Microbiol 22(6):996\u20131006","journal-title":"J Clin Microbiol"},{"issue":"9","key":"7169_CR17","doi-asserted-by":"publisher","first-page":"4353","DOI":"10.1073\/pnas.1000862107","volume":"107","author":"RW Crawford","year":"2010","unstructured":"Crawford RW, Reyesb RR, Ramirez-Aguilarb ML, Azuelac OC, Arandad CA, Gunna JS (2010) Gallstones play a significant role in Salmonella spp. gallbladder colonization and carriage. PNAS 107(9):4353\u20134358","journal-title":"PNAS"},{"key":"7169_CR18","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1016\/j.atg.2012.06.002","volume":"1","author":"CG Doss","year":"2012","unstructured":"Doss CG, Rajith B, Garwasis N, Mathew PR, Raju AS, Apoorva K, William D, Sadhana NR, Himani T, Dike IP (2012) Screening of mutations affecting protein stability and dynamics of FGFR1\u2014a simulation analysis. Appl Transl Genom 1:37\u201343","journal-title":"Appl Transl Genom"},{"key":"7169_CR19","doi-asserted-by":"publisher","first-page":"1887","DOI":"10.3390\/ijms18091887","volume":"18","author":"GDD Enea","year":"2017","unstructured":"Enea GDD, Ilaria C, Martina P, Luigi T, Fabrizio E (2017) Biofilm producing Salmonella Typhi: chronic colonization and development of gallbladder cancer. Int J Mol Sci 18:1887","journal-title":"Int J Mol Sci"},{"key":"7169_CR20","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1128\/CMR.00066-12","volume":"26","author":"A F\u00e0brega","year":"2013","unstructured":"F\u00e0brega A, Vila J (2013) Salmonella enterica serovar Typhimurium skills to succeed in the host: virulence and regulation. Clin Microbiol Rev 26:308\u2013341","journal-title":"Clin Microbiol Rev"},{"key":"7169_CR21","doi-asserted-by":"publisher","first-page":"1665","DOI":"10.1046\/j.1365-2958.2003.03815.x","volume":"50","author":"L Ferrieres","year":"2003","unstructured":"Ferrieres L, Clarke DJ (2003) The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface. Mol Microbiol 50:1665\u20131682","journal-title":"Mol Microbiol"},{"key":"7169_CR22","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1046\/j.1365-2958.2003.03601.x","volume":"49","author":"A Francez-Charlot","year":"2003","unstructured":"Francez-Charlot A, Laugel B, Van Gemert A, Dubarry N, Wiorowski F, Castanie-Cornet MP, Gutierrez C, Cam K (2003) RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli. Mol Microbiol 49:823\u2013832","journal-title":"Mol Microbiol"},{"key":"7169_CR23","doi-asserted-by":"publisher","first-page":"872","DOI":"10.1136\/jcp.42.8.872","volume":"42","author":"DJ Freeman","year":"1989","unstructured":"Freeman DJ, Falkiner FR, Keane CT (1989) New method for detecting slime production by coagulase negative staphylococci. J Clin Pathol 42:872\u2013874","journal-title":"J Clin Pathol"},{"key":"7169_CR24","doi-asserted-by":"publisher","first-page":"3784","DOI":"10.1093\/nar\/gkg563","volume":"31","author":"E Gasteiger","year":"2003","unstructured":"Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31:3784\u20133788","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"7169_CR25","doi-asserted-by":"publisher","first-page":"1223","DOI":"10.1128\/AAC.44.5.1223-1228.2000","volume":"44","author":"E Giraud","year":"2000","unstructured":"Giraud E, Cloeckaert A, Kerboeuf D, Chaslus-Dancla E (2000) Evidence for active efflux as the primary mechanism of resistance to ciprofloxacin in Salmonella enterica serovar Typhimurium. Antimicrob Agents Chemother 44(5):1223\u20131228","journal-title":"Antimicrob Agents Chemother"},{"issue":"7","key":"7169_CR26","doi-asserted-by":"publisher","first-page":"1937","DOI":"10.1016\/j.micinf.2005.12.025","volume":"8","author":"E Giraud","year":"2006","unstructured":"Giraud E, Baucheron S, Cloeckaert A (2006) Resistance to fluoroquinolones in Salmonella: emerging mechanisms and resistance prevention strategies. Microbes Infect 8(7):1937\u20131944","journal-title":"Microbes Infect"},{"issue":"1","key":"7169_CR27","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1038\/nrmicro2490","volume":"9","author":"G Gonzalez-Escobedo","year":"2011","unstructured":"Gonzalez-Escobedo G, Marshall JM, Gunn JS (2011) Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state. Nat Rev Microbiol 9(1):9\u201314","journal-title":"Nat Rev Microbiol"},{"key":"7169_CR28","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.mgene.2015.07.007","volume":"8","author":"AM Goswami","year":"2015","unstructured":"Goswami AM (2015) Structural modeling and in silico analysis of non-synonymous single nucleotide polymorphisms of human 3\u03b2-hydroxysteroid dehydrogenase type 2. Meta Gene 8:162\u2013172","journal-title":"Meta Gene"},{"key":"7169_CR29","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1186\/1556-276X-9-373","volume":"31","author":"S Gurunathan","year":"2014","unstructured":"Gurunathan S, Han JW, Kwon DN, Kim JH (2014) Enhanced antibacterial and anti-biofilm activities of silver nanoparticles against Gram-negative and Gram-positive bacteria. Nanoscale Res Lett 31:373","journal-title":"Nanoscale Res Lett"},{"key":"7169_CR30","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1001\/jama.296.2.202","volume":"296","author":"L Hall-Stoodley","year":"2006","unstructured":"Hall-Stoodley L, Hu FZ, Gieseke A, Nistico L, Nguyen D, Hayes J, Forbes M, Greenberg DP, Dice B, Burrows A, Wackym PA, Stoodley P, Post JC, Ehrlich GD, Kerschner E (2006) Direct detection of bacterial biofilms on the middle-ear mucosa of children with chronic otitis media. JAMA 296:202\u2013211","journal-title":"JAMA"},{"key":"7169_CR31","first-page":"29","volume":"4","author":"TN Hasan","year":"2011","unstructured":"Hasan TN, Grace BL, Masoodi TA, Shafi G, Alshatwi AA, Sivashanmugam P (2011) Affinity of estrogens for human progesterone receptor A and B monomers and risk of breast cancer: a comparative molecular modeling study. Adv Appl Bioinforma Chem 4:29\u201336","journal-title":"Adv Appl Bioinforma Chem"},{"issue":"6","key":"7169_CR32","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1007\/s10389-015-0655-x","volume":"23","author":"Illakia Sivaji","year":"2015","unstructured":"Ilakkia S, Senbagam D, Senthilkumar B, Sivakumar P (2015) A prevalence study of typhoid fever and convalescent phase asymptomatic typhoid carriers among the schoolchildren in the northern part of Tamil Nadu. J Public Health 23(6):373\u2013378. https:\/\/doi.org\/10.1007\/s10389-015-0655-x","journal-title":"Journal of Public Health"},{"key":"7169_CR33","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1016\/j.ejmhg.2015.12.2010","volume":"17","author":"S Ilakkia","year":"2016","unstructured":"Ilakkia S, Senbagam D, Senthilkumar B (2016) Analysis of TLR polymorphisms in typhoid patients and asymptomatic typhoid carriers among the schoolchildren. Egy J Med Hum Genet 17:353\u2013357. https:\/\/doi.org\/10.1016\/j.ejmhg.2015.12.2010","journal-title":"Egy J Med Hum Genet"},{"key":"7169_CR34","doi-asserted-by":"publisher","first-page":"S7","DOI":"10.1186\/1471-2105-13-S17-S7","volume":"13","author":"B Jayaram","year":"2012","unstructured":"Jayaram B, Singh T, Mukherjee G, Mathur A, Shekhar S, Shekhar V (2012) Sanjeevini: a freely accessible web-server for target directed lead molecule discovery. BMC Bioinform 13:S7","journal-title":"BMC Bioinform"},{"key":"7169_CR35","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1146\/annurev.bioeng.10.061807.160536","volume":"10","author":"A Jayaraman","year":"2008","unstructured":"Jayaraman A, Wood TK (2008) Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease. Annu Rev Biomed Eng 10:145\u2013167","journal-title":"Annu Rev Biomed Eng"},{"key":"7169_CR36","doi-asserted-by":"publisher","first-page":"1329","DOI":"10.1016\/j.jmb.2010.01.074","volume":"397","author":"BR Jefferys","year":"2010","unstructured":"Jefferys BR, Kelley LA, Sternberg MJ (2010) Protein folding requires crowd control in a simulated cell. J Mol Biol 397:1329\u20131338","journal-title":"J Mol Biol"},{"issue":"3","key":"7169_CR37","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1038\/nprot.2009.2","volume":"4","author":"LA Kelley","year":"2009","unstructured":"Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4(3):363\u2013371","journal-title":"Nat Protoc"},{"issue":"6","key":"7169_CR38","doi-asserted-by":"publisher","first-page":"845","DOI":"10.1038\/nprot.2015.053","volume":"10","author":"LA Kelley","year":"2015","unstructured":"Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ (2015) The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc 10(6):845\u2013858","journal-title":"Nat Protoc"},{"issue":"D1","key":"7169_CR39","doi-asserted-by":"publisher","first-page":"D1202","DOI":"10.1093\/nar\/gkv951","volume":"44","author":"S Kim","year":"2016","unstructured":"Kim S, Thiessen PA, Bolton EE, Chen J, Fu G, Gindulyte A, Han L, He J, He S, Shoemaker BA, Wang J, Yu B, Zhang J, Bryant SH (2016) PubChem substance and compound databases. Nucleic Acids Res 44(D1):D1202\u2013D1213","journal-title":"Nucleic Acids Res"},{"key":"7169_CR40","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1107\/S0021889892009944","volume":"26","author":"RA Laskowski","year":"1993","unstructured":"Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK-a program to check the stereo chemical quality of protein structures. J Appl Crystallogr 26:283\u2013291","journal-title":"J Appl Crystallogr"},{"issue":"4","key":"7169_CR41","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1016\/j.ddtec.2004.11.007","volume":"1","author":"Christopher A. Lipinski","year":"2004","unstructured":"Lipinski CA (2004) Lead- and drug-like compounds: the rule-of-five revolution. Drug Discov Today Technol 1(4):337\u2013341","journal-title":"Drug Discovery Today: Technologies"},{"key":"7169_CR42","first-page":"e9","volume":"9","author":"JM Marshall","year":"2014","unstructured":"Marshall JM, Flechtner AD, La Perle KM, Gunn JS (2014) Visualization of extracellular matrix components within sectioned Salmonella biofilms on the surface of human gallstones. PLoS One 9:e9\u2013e89243","journal-title":"PLoS One"},{"key":"7169_CR43","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1016\/j.mimet.2004.04.016","volume":"58","author":"RJC McLean","year":"2004","unstructured":"McLean RJC, Pierson LS, Fuqua C (2004) A simple screening protocol for the identification of quorum signal antagonists. J Microbiol Methods 58:351\u2013360","journal-title":"J Microbiol Methods"},{"issue":"4","key":"7169_CR44","doi-asserted-by":"publisher","first-page":"204","DOI":"10.1016\/S0213-005X(04)73067-0","volume":"22","author":"E Miro","year":"2004","unstructured":"Miro E, Verges C, Garcia I, Mirelis B, Navarro F, Coll P, Prats G, Martinez-Martinez L (2004) Resistance to quinolones and beta-lactams in Salmonella enterica due to mutations in topoisomerase-encoding genes, altered cell permeability and expression of an active efflux system. Enferm Infect Microbiol Clin 22(4):204\u2013211","journal-title":"Enferm Infect Microbiol Clin"},{"key":"7169_CR45","doi-asserted-by":"publisher","first-page":"2601","DOI":"10.1101\/gad.1700308","volume":"22","author":"AY Mitrophanov","year":"2008","unstructured":"Mitrophanov AY, Groisman EA (2008) Signal integration in bacterial two-component regulatory systems. Genes Dev 22:2601\u20132611","journal-title":"Genes Dev"},{"key":"7169_CR46","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1016\/j.tim.2008.11.001","volume":"17","author":"RD Monds","year":"2009","unstructured":"Monds RD, O\u2019Toole GA (2009) The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol 17:73\u201387","journal-title":"Trends Microbiol"},{"issue":"11","key":"7169_CR47","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.0050307","volume":"5","author":"D Monroe","year":"2007","unstructured":"Monroe D (2007) Looking for chinks in the armor of bacterial biofilms. PLoS Biol 5(11):e307","journal-title":"PLoS Biol"},{"key":"7169_CR48","doi-asserted-by":"publisher","first-page":"2785","DOI":"10.1002\/jcc.21256","volume":"16","author":"GM Morris","year":"2009","unstructured":"Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ (2009) Autodock4 and AutoDockTools4: automated docking with selective receptor flexiblity. J Comput Chem 16:2785\u20132791","journal-title":"J Comput Chem"},{"issue":"1","key":"7169_CR49","first-page":"117","volume":"8","author":"K Murugan","year":"2013","unstructured":"Murugan K, Selvanayaki K, Kalyanasundaram VB, Saleh A-S (2013) Nanotechnological approach for exploring the antibiofilm a potential of an ethanomedicinal herb Andrographis paniculata for controlling lung infection causing Pseudomonas aeruginosa. Dig J Nanomat Biostru 8(1):117\u2013126","journal-title":"Dig J Nanomat Biostru"},{"issue":"1","key":"7169_CR50","first-page":"2431","volume":"9","author":"K Murugan","year":"2014","unstructured":"Murugan K, Senthilkumar B, Senbagam D, Saleh Al S (2014) Biosynthesis of silver nanoparticles using Acacia leucophloea extract and their antibacterial activity. Int J Nanomedicine 9(1):2431\u20132438","journal-title":"Int J Nanomedicine"},{"key":"7169_CR51","doi-asserted-by":"publisher","first-page":"903","DOI":"10.1099\/mic.0.000050","volume":"161","author":"R Oropeza","year":"2015","unstructured":"Oropeza R, Salgado-Bravo R, Calva E (2015) Deletion analysis of RcsC reveals a novel signalling pathway controlling poly-N-acetyl glucosamine synthesis and biofilm formation in Escherichia coli. Microbiol 161:903\u2013913","journal-title":"Microbiol"},{"key":"7169_CR52","doi-asserted-by":"publisher","first-page":"e1000589","DOI":"10.1371\/journal.pbio.1000589","volume":"9","author":"V Parashar","year":"2011","unstructured":"Parashar V, Mirouze N, Dubnau DA, Neiditch MB (2011) Structural basis of response regulator dephosphorylation by Rap phosphatases. PLoS Biol 9:e1000589","journal-title":"PLoS Biol"},{"issue":"23","key":"7169_CR53","doi-asserted-by":"publisher","first-page":"7253","DOI":"10.1128\/JB.00727-09","volume":"191","author":"CA Perrett","year":"2009","unstructured":"Perrett CA, Karavolos MH, Humphrey S, Mastroeni P, Martinez-Argudo I, Spencer H, Bulmer D, Winzer K, McGhie E, Koronakis V, Williams P, Khan CM, Jepson MA (2009) LuxS-based quorum sensing does not affect the ability of Salmonella enterica serovar Typhimurium to express the SPI-1 type 3 secretion system, induce membrane ruffles, or invade epithelial cells. J Bacteriol 191(23):7253\u20137259","journal-title":"J Bacteriol"},{"key":"7169_CR54","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/s40203-015-0008-z","volume":"3","author":"CN Powers","year":"2015","unstructured":"Powers CN, Setzer WN (2015) A molecular docking study of phytochemical estrogen mimics from dietary herbal supplements. In Silico Pharmoclo 3:4. https:\/\/doi.org\/10.1186\/s40203-015-0008-z","journal-title":"In Silico Pharmoclo"},{"key":"7169_CR55","doi-asserted-by":"publisher","first-page":"2640","DOI":"10.1128\/IAI.70.5.2640-2649.2002","volume":"70","author":"AM Prouty","year":"2002","unstructured":"Prouty AM, Schwesinger WH, Gunn JS (2002) Biofilm formation and interaction with the surfaces of gallstones by Salmonella spp. Infect Immun 70:2640\u20132649","journal-title":"Infect Immun"},{"key":"7169_CR56","doi-asserted-by":"publisher","first-page":"e00259","DOI":"10.1128\/JB.00259-17","volume":"199","author":"BM Pr\u00fc\u00df","year":"2017","unstructured":"Pr\u00fc\u00df BM (2017) Involvement of two-component signaling on bacterial motility and biofilm development. J Bacteriol 199:e00259\u2013e00217","journal-title":"J Bacteriol"},{"key":"7169_CR57","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/978-1-4939-6783-4_2","volume":"1558","author":"S Pundir","year":"2017","unstructured":"Pundir S, Martin MJ, O\u2019Donovan C (2017) UniProt protein knowledgebase. Methods Mol Biol 1558:41\u201355","journal-title":"Methods Mol Biol"},{"key":"7169_CR58","unstructured":"Reeve KE (2010) Salmonella binding to and biofilm formation on cholesterol\/gallstone surfaces in the chronic carrier state. Undergraduate Honors Thesis. School of Allied Medical Professions, The Ohio State University"},{"key":"7169_CR59","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1038\/nmeth.1818","volume":"9","author":"M Remmert","year":"2012","unstructured":"Remmert M, Biegert A, Hauser A, Soding J (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods 9:173\u2013175","journal-title":"Nat Methods"},{"key":"7169_CR60","first-page":"113","volume":"26","author":"C Sasikumar","year":"2005","unstructured":"Sasikumar C, Kanan V, Senthilkumar B (2005) Asymptomatic typhoid carriers in Namakkal District Tamil Nadu. J Environ Biol 26:113\u2013115","journal-title":"J Environ Biol"},{"issue":"5873","key":"7169_CR61","doi-asserted-by":"publisher","first-page":"447","DOI":"10.1038\/298447a0","volume":"298","author":"RT Sauer","year":"1982","unstructured":"Sauer RT, Yocum RR, Doolittle RF, Lewis M, Pabo CO (1982) Homology among DNA-binding proteins suggests use of a conserved super-secondary structure. Nature 298(5873):447\u2013451","journal-title":"Nature"},{"issue":"3","key":"7169_CR62","doi-asserted-by":"publisher","first-page":"432","DOI":"10.1111\/j.1574-695X.2010.00698.x","volume":"59","author":"KG Seghal","year":"2010","unstructured":"Seghal KG, Sabarathnam B, Selvin J (2010) Biofilm disruption potential of a glycolipid biosurfactant from marine Brevibacterium casei. FEMS Immunol Med Microbiol 59(3):432\u2013438","journal-title":"FEMS Immunol Med Microbiol"},{"issue":"2","key":"7169_CR63","doi-asserted-by":"publisher","first-page":"92","DOI":"10.4103\/0255-0857.16046","volume":"23","author":"B Senthilkumar","year":"2005","unstructured":"Senthilkumar B, Prabakaran G (2005) Multidrug resistant Salmonella typhi in asymptomatic typhoid carriers among food handlers in Namakkal District Tamil Nadu. Indian J Med Microbiol 23(2):92\u201394","journal-title":"Indian J Med Microbiol"},{"issue":"1","key":"7169_CR64","first-page":"337","volume":"5","author":"B Senthilkumar","year":"2011","unstructured":"Senthilkumar B, Venkatachiranjeevi P, Rajasekarapandian M (2011) Antibacterial effects of viable antibiotics and pomegranate (Punica granatum) bark extracts on Salmonella typhi and Salmonella paratyphi A isolates from asymptomatic typhoid carriers in Ongole, Andhrapradesh, India. J Pure Appl Microbiol 5(1):337\u2013342","journal-title":"J Pure Appl Microbiol"},{"issue":"12","key":"7169_CR65","doi-asserted-by":"publisher","first-page":"933","DOI":"10.1016\/S1995-7645(14)60165-6","volume":"7","author":"B Senthilkumar","year":"2014","unstructured":"Senthilkumar B, Anbarasu K, Senbagam D, Rajasekarapandian M (2014a) Induction of deletion mutation on ompR gene of Salmonella enterica serovar Typhi isolates from asymptomatic typhoid carriers to evolve attenuated strains for vaccine development. Asian Pac J Trop Med 7(12):933\u2013939","journal-title":"Asian Pac J Trop Med"},{"issue":"3","key":"7169_CR66","doi-asserted-by":"publisher","first-page":"297","DOI":"10.1007\/s10389-012-0545-4","volume":"22","author":"Balakrishnan Senthilkumar","year":"2012","unstructured":"Senthilkumar B, Senbagam D, Rajasekarapandian M (2014b) An epidemiological surveillance of asymptomatic typhoid carriers associated in respect to socioeconomic status in India. J Public Health 22:297\u2013301. https:\/\/doi.org\/10.1007\/s10389-012-0545-4","journal-title":"Journal of Public Health"},{"issue":"2","key":"7169_CR67","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1007\/s10389-013-0604-5","volume":"22","author":"Balakrishnan Senthilkumar","year":"2014","unstructured":"Senthilkumar B, Sivakumar P, Madhanraj R, Senbagam D, Ilakkia S (2014c) A comparative analysis of TLR5 polymorphism and clinical parameters in typhoid patients and asymptomatic typhoid carriers. J Public Health 22:131\u2013137. https:\/\/doi.org\/10.1007\/s10389-013-0604-5","journal-title":"Journal of Public Health"},{"key":"7169_CR68","doi-asserted-by":"publisher","first-page":"14758","DOI":"10.1007\/s11356-017-9065-7","volume":"24","author":"B Senthilkumar","year":"2017","unstructured":"Senthilkumar B, Ilakkia S, Selvam K, Senbagam D, Nachimuthu S, Guruswami G (2017) Biosynthesis of silver nanoparticles using Myristica fragrans seed (nutmeg) extract and its antibacterial activity against multidrug resistant (MDR) Salmonella enterica serovar Typhi isolates. Environ Sci Pollut Res 24:14758\u201314769. https:\/\/doi.org\/10.1007\/s11356-017-9065-7","journal-title":"Environ Sci Pollut Res"},{"key":"7169_CR69","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1201\/b22196","volume-title":"Pocket guide to biomedical Sciences,1st edn","author":"B Senthilkumar","year":"2019","unstructured":"Senthilkumar B, Senbagam D, Prahalathan C, Anbarasu K (2019) Gateways of pathogenic bacterial entry into host cells-Salmonella. In: Balamurugan K, Prithika U (eds) Pocket guide to biomedical Sciences,1st edn. CRC Press, Taylor & Francis Group, USA, pp 59\u201378. https:\/\/doi.org\/10.1201\/b22196"},{"issue":"1","key":"7169_CR70","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1590\/1806-9061-2016-0268","volume":"19","author":"MJ Sereno","year":"2017","unstructured":"Sereno MJ, Ziech RE, Druziani JT, Pereira JG, Bersot LS (2017) Antimicrobial susceptibility and biofilm production by Salmonella sp. strains isolated from frozen poultry carcasses. Braz J Poultry Sci. https:\/\/doi.org\/10.1590\/1806-9061-2016-0268","journal-title":"Revista Brasileira de Ci\u00eancia Av\u00edcola"},{"issue":"2014","key":"7169_CR71","first-page":"823e834","volume":"66","author":"IM Sharma","year":"2014","unstructured":"Sharma IM, Petchiappan A, Chatterji D (2014) Quorum sensing and biofilm formation in mycobacteria: role of c-di-GMP and methods to study this second messenger. IUBMB Life 66(2014):823e834","journal-title":"IUBMB Life"},{"key":"7169_CR72","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1186\/s12866-017-0966-x","volume":"17","author":"VK Sharma","year":"2017","unstructured":"Sharma VK, Bayles DO, Alt DP, Looft T, Brunelle BW, Stasko JA (2017) Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism. BMC Microbiol 17:56","journal-title":"BMC Microbiol"},{"key":"7169_CR73","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1016\/j.tifs.2009.01.054","volume":"20","author":"X Shi","year":"2009","unstructured":"Shi X, Zhu X (2009) Biofilm formation and food safety in food industries. Trends Food Sci Technol 20:407\u2013413. https:\/\/doi.org\/10.1016\/j.tifs.2009.01.054","journal-title":"Trends Food Sci Technol"},{"issue":"9276","key":"7169_CR74","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1016\/S0140-6736(01)05321-1","volume":"358","author":"PS Stewart","year":"2001","unstructured":"Stewart PS, Costerton JW (2001) Antibiotic resistance of bacteria in biofilms. Lancet 358(9276):135\u2013138","journal-title":"Lancet"},{"key":"7169_CR75","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1146\/annurev.biochem.69.1.183","volume":"69","author":"AM Stock","year":"2000","unstructured":"Stock AM, Robinson VL, Goudrea PN (2000) Two-component signal transduction. Annu Rev Biochem 69:183\u2013215","journal-title":"Annu Rev Biochem"},{"key":"7169_CR76","doi-asserted-by":"publisher","first-page":"E93","DOI":"10.2741\/A699","volume":"6","author":"A Swidsinski","year":"2001","unstructured":"Swidsinski A, Lee SP (2001) The role of bacteria in gallstone pathogenesis. Front Biosci 6:E93\u2013E103","journal-title":"Front Biosci"},{"key":"7169_CR77","doi-asserted-by":"crossref","first-page":"3141","DOI":"10.1242\/jcs.113.18.3141","volume":"113","author":"P Thomason","year":"2000","unstructured":"Thomason P, Kay R (2000) Eukaryotic signal transduction via histidine-aspartate phosphorelay. J Cell Sci 113:3141\u20133150","journal-title":"J Cell Sci"},{"key":"7169_CR78","doi-asserted-by":"publisher","first-page":"12547","DOI":"10.1074\/jbc.R115.711507","volume":"291","author":"M Valentini","year":"2016","unstructured":"Valentini M, Filloux A (2016) Biofilms and cyclic di-GMP (c-di-GMP) signaling: lessons from Pseudomonas aeruginosa and other bacteria. J Biol Chem 291:12547\u201312555","journal-title":"J Biol Chem"},{"key":"7169_CR79","unstructured":"van Gunsteren WF, Billeter SR, Eising AA, H\u00fcnenberger PH, Kr\u00fcger P, Mark AE, Scott WRP, Tironi IG (1996) Biomolecular simulation: the GROMOS96 manual and user guide. Verlagder Fachvereine Hochschulverlag AG an der ETH Z\u00fcrich: 1\u20131042"},{"issue":"7","key":"7169_CR80","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1136\/vr.136.7.169","volume":"136","author":"A Veldman","year":"1995","unstructured":"Veldman A, Vahl HA, Borggreve GJ, Fuller DC (1995) A survey of the incidence of Salmonella species and Enterobacteriaceae in poultry feeds and feed components. Vet Rec 136(7):169\u2013172","journal-title":"Vet Rec"},{"key":"7169_CR81","doi-asserted-by":"publisher","first-page":"1100","DOI":"10.1093\/jac\/dkl120","volume":"57","author":"GX Wei","year":"2006","unstructured":"Wei GX, Campagna AN, Bobek LA (2006) Effect of MUC7 peptides on the growth of bacteria and on Streptococcus mutans biofilm. J Antimicrob Chemother 57:1100\u20131109","journal-title":"J Antimicrob Chemother"},{"issue":"Web Server issu","key":"7169_CR82","doi-asserted-by":"publisher","first-page":"W407","DOI":"10.1093\/nar\/gkm290","volume":"35","author":"M Wiederstein","year":"2007","unstructured":"Wiederstein M, Sippl MJ (2007) ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res 35(Web Server issue):W407\u2013W410. https:\/\/doi.org\/10.1093\/nar\/gkm290","journal-title":"Nucleic Acids Res"},{"key":"7169_CR83","doi-asserted-by":"publisher","first-page":"2525","DOI":"10.1016\/j.bpj.2011.10.024","volume":"101","author":"D Xu","year":"2011","unstructured":"Xu D, Zhang Y (2011) Improving the physical realism and structural accuracy of protein models by a two-step atomic-level energy minimization. Biophys J 101:2525\u20132534","journal-title":"Biophys J"},{"issue":"6","key":"7169_CR84","doi-asserted-by":"publisher","first-page":"2621","DOI":"10.1007\/s00044-015-1320-1","volume":"24","author":"RP Yadav","year":"2015","unstructured":"Yadav RP, Ibrahim KS, Gurusubramanian G, Kumar NS (2015) In silico docking studies of non-azadirachtinlimonoids against ecdysone receptor of Helicover paarmigera (Hubner) (Lepidoptera: Noctuidae). Med Chem Res 24(6):2621\u20132631","journal-title":"Med Chem Res"},{"key":"7169_CR85","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1002\/jmr.2266","volume":"26","author":"E Yuriev","year":"2013","unstructured":"Yuriev E, Ramsland PA (2013) Latest developments in molecular docking: 2010\u20132011 in review. J Mol Recognit 26:215\u2013239","journal-title":"J Mol Recognit"},{"key":"7169_CR86","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1002\/jmr.1077","volume":"24","author":"E Yuriev","year":"2011","unstructured":"Yuriev E, Agostino M, Ramsland PA (2011) Challenges and advances in computational docking: 2009 in review. J Mol Recognit 24:149\u2013164","journal-title":"J Mol Recognit"},{"key":"7169_CR87","doi-asserted-by":"publisher","first-page":"3752","DOI":"10.1016\/j.jmb.2016.08.003","volume":"428","author":"CP Zschiedrich","year":"2016","unstructured":"Zschiedrich CP, Keidel V, Szurmant H (2016) Molecular mechanisms of two-component signal transduction. J Mol Biol 428:3752\u20133775","journal-title":"J Mol Biol"}],"container-title":["Environmental Science and Pollution Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-019-07169-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11356-019-07169-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-019-07169-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,10,8]],"date-time":"2022-10-08T12:21:32Z","timestamp":1665231692000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11356-019-07169-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,12,13]]},"references-count":87,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2020,1]]}},"alternative-id":["7169"],"URL":"https:\/\/doi.org\/10.1007\/s11356-019-07169-5","relation":{},"ISSN":["0944-1344","1614-7499"],"issn-type":[{"value":"0944-1344","type":"print"},{"value":"1614-7499","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,12,13]]},"assertion":[{"value":"9 April 2019","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"25 November 2019","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 December 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interests"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}}]}}