{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T23:43:53Z","timestamp":1792885433824,"version":"4.5.0"},"reference-count":60,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2022,8,8]],"date-time":"2022-08-08T00:00:00Z","timestamp":1659916800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2022,8,8]],"date-time":"2022-08-08T00:00:00Z","timestamp":1659916800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Environ Sci Pollut Res"],"published-print":{"date-parts":[[2023,1]]},"DOI":"10.1007\/s11356-022-22197-4","type":"journal-article","created":{"date-parts":[[2022,8,8]],"date-time":"2022-08-08T10:02:40Z","timestamp":1659952960000},"page":"2977-2990","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":17,"title":["Exploring antibiotic resistance genes, mobile gene elements, and virulence gene factors in an urban freshwater samples using metagenomic analysis"],"prefix":"10.1007","volume":"30","author":[{"given":"Sohail M.","family":"Noman","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhammad","family":"Shafiq","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shabana","family":"Bibi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bharti","family":"Mittal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yumeng","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mi","family":"Zeng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xin","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oluwaseyi Abraham","family":"Olawale","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoyang","family":"Jiao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhammad","family":"Irshad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,8,8]]},"reference":[{"key":"22197_CR1","doi-asserted-by":"publisher","unstructured":"Ahmad T, Gupta G, Sharma A, Kaur B, El-Sheikh MA, Alyemeni MN (2021) Metagenomic analysis exploring taxonomic and functional diversity of bacterial communities of a Himalayan urban fresh water lake. PLoS ONE 16(3 March), 1\u201319. https:\/\/doi.org\/10.1371\/journal.pone.0248116","DOI":"10.1371\/journal.pone.0248116"},{"issue":"2","key":"22197_CR2","doi-asserted-by":"publisher","first-page":"1477","DOI":"10.1007\/S10311-020-01152-0","volume":"19","author":"D Akhil","year":"2021","unstructured":"Akhil D, Lakshmi D, Senthil Kumar P, Vo DVN, Kartik A (2021) Occurrence and removal of antibiotics from industrial wastewater. Environ Chem Lett 19(2):1477\u20131507. https:\/\/doi.org\/10.1007\/S10311-020-01152-0","journal-title":"Environ Chem Lett"},{"key":"22197_CR3","doi-asserted-by":"publisher","unstructured":"Alexander J, Hembach N, Schwartz T (2020) Evaluation of antibiotic resistance dissemination by wastewater treatment plant effluents with different catchment areas in Germany. Scientific Reports 2020 10:1, 10(1), 1\u20139. https:\/\/doi.org\/10.1038\/s41598-020-65635-4","DOI":"10.1038\/s41598-020-65635-4"},{"key":"22197_CR4","doi-asserted-by":"publisher","unstructured":"Anh HQ, Le TPQ, Da Le N, Lu XX, Duong TT, Garnier J, Rochelle-Newall E, Zhang S, Oh NH, Oeurng C, Ekkawatpanit C, Nguyen TD, Nguyen QT, Nguyen TD, Nguyen TN, Tran TL, Kunisue T, Tanoue R, Takahashi S, \u2026 Nguyen TAH (2021) Antibiotics in surface water of East and Southeast Asian countries: a focused review on contamination status, pollution sources, potential risks, and future perspectives Sci Total Environ 764(1):142873. https:\/\/doi.org\/10.1016\/J.SCITOTENV.2020.142865","DOI":"10.1016\/J.SCITOTENV.2020.142865"},{"issue":"14","key":"22197_CR5","doi-asserted-by":"publisher","first-page":"4126","DOI":"10.1093\/BIOINFORMATICS\/BTAA490","volume":"36","author":"D Antipov","year":"2020","unstructured":"Antipov D, Raiko M, Lapidus A, Pevzner PA (2020) MetaviralSPAdes: assembly of viruses from metagenomic data. Bioinformatics 36(14):4126\u20134129. https:\/\/doi.org\/10.1093\/BIOINFORMATICS\/BTAA490","journal-title":"Bioinformatics"},{"issue":"10","key":"22197_CR6","doi-asserted-by":"publisher","first-page":"5917","DOI":"10.1111\/1462-2920.15688","volume":"23","author":"F Arenas","year":"2021","unstructured":"Arenas F, Navarro-R\u00f3denas A, Marqu\u00e9s-G\u00e1lvez JE, Ghignone S, Mello A, Morte A (2021) Different patterns in root and soil fungal diversity drive plant productivity of the desert truffle Terfezia claveryi in plantation. Environ Microbiol 23(10):5917\u20135933. https:\/\/doi.org\/10.1111\/1462-2920.15688","journal-title":"Environ Microbiol"},{"key":"22197_CR7","doi-asserted-by":"publisher","unstructured":"Baniya A, Digennaro P (2021) Genome announcement of Steinernema khuongi and its associated symbiont from Florida. G3 Genes|Genomes|Genetics, 11(4), 1\u201316. https:\/\/doi.org\/10.1093\/G3JOURNAL\/JKAB053","DOI":"10.1093\/G3JOURNAL\/JKAB053"},{"key":"22197_CR8","doi-asserted-by":"publisher","unstructured":"Barancheshme F, Munir M (2018) Strategies to combat antibiotic resistance in the wastewater treatment plants. Front Microbiol 8(JAN):2615. https:\/\/doi.org\/10.3389\/FMICB.2017.02603\/BIBTEX","DOI":"10.3389\/FMICB.2017.02603\/BIBTEX"},{"issue":"1","key":"22197_CR9","doi-asserted-by":"publisher","first-page":"33","DOI":"10.2174\/0929867328666210820114025","volume":"28","author":"S Bibi","year":"2021","unstructured":"Bibi S, Hasan MM, Wang Y-B, Papadakos SP, Yu H (2021) Cordycepin as a promising inhibitor of SARS-CoV-2 RNA dependent RNA polymerase (RdRp). Curr Med Chem 28(1):33\u201341. https:\/\/doi.org\/10.2174\/0929867328666210820114025","journal-title":"Curr Med Chem"},{"issue":"2","key":"22197_CR10","doi-asserted-by":"publisher","first-page":"97","DOI":"10.2174\/1573406416666191227120425","volume":"17","author":"S Bibi","year":"2019","unstructured":"Bibi S, Wang Y-B, Tang D-X, Kamal MA, Yu H (2019) Prospects for discovering the secondary metabolites of Cordyceps sensu lato by the integrated strategy. Med Chem 17(2):97\u2013120. https:\/\/doi.org\/10.2174\/1573406416666191227120425","journal-title":"Med Chem"},{"key":"22197_CR11","doi-asserted-by":"publisher","unstructured":"Biswas P, Hasan MM, Dey D, dos Santos Costa AC, Polash SA, Bibi S, Ferdous N, Kaium MA, Rahman MH, Jeet FK, Papadakos S, Islam K, Uddin MS (2021) Candidate antiviral drugs for COVID-19 and their environmental implications: a comprehensive analysis. Environ Sci Pollut Res 2021 28:42, 28(42), 59570\u201359593. https:\/\/doi.org\/10.1007\/S11356-021-16096-3","DOI":"10.1007\/S11356-021-16096-3"},{"issue":"19","key":"22197_CR12","doi-asserted-by":"publisher","first-page":"3137","DOI":"10.1093\/BIOINFORMATICS\/BTX373","volume":"33","author":"J Brown","year":"2017","unstructured":"Brown J, Pirrung M, Mccue LA (2017) FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics 33(19):3137\u20133139. https:\/\/doi.org\/10.1093\/BIOINFORMATICS\/BTX373","journal-title":"Bioinformatics"},{"issue":"1","key":"22197_CR13","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/S40168-019-0663-0\/FIGURES\/5","volume":"7","author":"Y Che","year":"2019","unstructured":"Che Y, Xia Y, Liu L, Li AD, Yang Y, Zhang T (2019) Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing. Microbiome 7(1):1\u201313. https:\/\/doi.org\/10.1186\/S40168-019-0663-0\/FIGURES\/5","journal-title":"Microbiome"},{"issue":"1","key":"22197_CR14","doi-asserted-by":"publisher","DOI":"10.1016\/J.SCITOTENV.2019.135395","volume":"706","author":"J Chopyk","year":"2020","unstructured":"Chopyk J, Nasko DJ, Allard S, Callahan MT, Bui A, Ferelli AMC, Chattopadhyay S, Mongodin EF, Pop M, Micallef SA, Sapkota AR (2020) Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics. Sci Total Environ 706(1):135409. https:\/\/doi.org\/10.1016\/J.SCITOTENV.2019.135395","journal-title":"Sci Total Environ"},{"key":"22197_CR15","doi-asserted-by":"publisher","unstructured":"Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KR, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, Mutai B, Neches RY, Ng A, \u2026 Zubenko S (2021) A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell 184(13):3376-3393.e17https:\/\/doi.org\/10.1016\/J.CELL.2021.05.002","DOI":"10.1016\/J.CELL.2021.05.002"},{"key":"22197_CR16","doi-asserted-by":"publisher","unstructured":"D\u00e1valos AF, Garcia PK, Montoya-Pachongo C, Rengifo A, Guerrero D, D\u00edaz-Ordo\u00f1ez L, D\u00edaz G, Ferro BE (2021) Identification of nontuberculous mycobacteria in drinking water in Cali, Colombia. Int J Environ Res Public Health 2021, Vol. 18, Page 8451, 18(16), 8462. https:\/\/doi.org\/10.3390\/IJERPH18168451","DOI":"10.3390\/IJERPH18168451"},{"issue":"1","key":"22197_CR17","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/srep27930","volume":"6","author":"JJ Davis","year":"2016","unstructured":"Davis JJ, Boisvert S, Brettin T, Kenyon RW, Mao C, Olson R, Overbeek R, Santerre J, Shukla M, Wattam AR, Will R, Xia F, Stevens R (2016) Antimicrobial resistance prediction in PATRIC and RAST. Sci Rep 6(1):1\u201312. https:\/\/doi.org\/10.1038\/srep27930","journal-title":"Sci Rep"},{"key":"22197_CR18","doi-asserted-by":"publisher","unstructured":"Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, MacHi D, Mao C, Murphy-Olson D, Nguyen M, Nordberg EK, \u2026 Stevens R (2020) The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res 48(D1):D606-D612https:\/\/doi.org\/10.1093\/NAR\/GKZ943","DOI":"10.1093\/NAR\/GKZ943"},{"issue":"1","key":"22197_CR19","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1016\/J.CHEMOSPHERE.2019.02.068","volume":"224","author":"H Fang","year":"2019","unstructured":"Fang H, Huang K, Yu J, Ding C, Wang Z, Zhao C, Yuan H, Wang Z, Wang S, Hu J, Cui Y (2019) Metagenomic analysis of bacterial communities and antibiotic resistance genes in the Eriocheir sinensis freshwater aquaculture environment. Chemosphere 224(1):202\u2013211. https:\/\/doi.org\/10.1016\/J.CHEMOSPHERE.2019.02.068","journal-title":"Chemosphere"},{"key":"22197_CR20","doi-asserted-by":"publisher","first-page":"983","DOI":"10.1016\/J.SCITOTENV.2013.10.076","volume":"470\u2013471","author":"H Fang","year":"2014","unstructured":"Fang H, Cai L, Yang Y, Ju F, Li X, Yu Y, Zhang T (2014) Metagenomic analysis reveals potential biodegradation pathways of persistent pesticides in freshwater and marine sediments. Sci Total Environ 470\u2013471:983\u2013992. https:\/\/doi.org\/10.1016\/J.SCITOTENV.2013.10.076","journal-title":"Sci Total Environ"},{"issue":"1","key":"22197_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/S13756-019-0508-4\/FIGURES\/5","volume":"8","author":"M Farman","year":"2019","unstructured":"Farman M, Yasir M, Al-Hindi RR, Farraj SA, Jiman-Fatani AA, Alawi M, Azhar EI (2019) Genomic analysis of multidrug-resistant clinical Enterococcus faecalis isolates for antimicrobial resistance genes and virulence factors from the western region of Saudi Arabia. Antimicrob Resist Infect Control 8(1):1\u201311. https:\/\/doi.org\/10.1186\/S13756-019-0508-4\/FIGURES\/5","journal-title":"Antimicrob Resist Infect Control"},{"key":"22197_CR22","unstructured":"Frank H (2021) Harrell Miscellaneous Package \u2018Hmisc.\u2019 https:\/\/hbiostat.org\/R\/Hmisc\/"},{"issue":"1","key":"22197_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/J.MARGEN.2021.100916","volume":"61","author":"E Gabashvili","year":"2022","unstructured":"Gabashvili E, Kobakhidze S, Chkhikvishvili T, Tabatadze L, Tsiklauri R, Dadiani K, Koulouris S, Kotetishvili M (2022) Metagenomic and recombination analyses of antimicrobial resistance genes from recreational waters of Black Sea coastal areas and other marine environments unveil extensive evidence for their both intrageneric and intergeneric transmission across Genetical. Mar Genomics 61(1):100931. https:\/\/doi.org\/10.1016\/J.MARGEN.2021.100916","journal-title":"Mar Genomics"},{"issue":"2","key":"22197_CR24","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1177\/2010105820960175","volume":"30","author":"JL Goh","year":"2020","unstructured":"Goh JL, Jaffar JLY, Xu H, Lum VWM (2020) A retrospective study on end-of-life care in the emergency department of a tertiary hospital in Singapore. Proceedings of Singapore Healthcare 30(2):138\u2013144. https:\/\/doi.org\/10.1177\/2010105820960175","journal-title":"Proceedings of Singapore Healthcare"},{"key":"22197_CR25","doi-asserted-by":"publisher","unstructured":"Grant KR (2022) Next-Generation Amplicon Sequencing: A cost-effective method for exploring microbial biodiversity. In Molecular genetics and genomics tools in biodiversity conservation (1st ed., Vol. 1, pp. 203\u2013236). Springer, Singapore. https:\/\/doi.org\/10.1007\/978-981-16-6005-4_10","DOI":"10.1007\/978-981-16-6005-4_10"},{"issue":"28","key":"22197_CR26","doi-asserted-by":"publisher","first-page":"29052","DOI":"10.1007\/s11356-019-05859-8","volume":"26","author":"JA Kori","year":"2019","unstructured":"Kori JA, Mahar RB, Vistro MR, Tariq H, Khan IA, Goel R (2019) Metagenomic analysis of drinking water samples collected from treatment plants of Hyderabad City and Mehran University Employees Cooperative Housing Society. Environ Sci Pollut Res 26(28):29052\u201329064. https:\/\/doi.org\/10.1007\/s11356-019-05859-8","journal-title":"Environ Sci Pollut Res"},{"key":"22197_CR27","doi-asserted-by":"publisher","unstructured":"Kumar Awasthi, M., Ravindran, B., Sarsaiya, S., Chen, H., Wainaina, S., Singh, E., Liu, T., Kumar, S., Pandey, A., Singh, L., & Zhang, Z. (2020). Metagenomics for taxonomy profiling: tools and approaches. 11(1):356\u2013374. https:\/\/doi.org\/10.1080\/21655979.2020.1736238","DOI":"10.1080\/21655979.2020.1736238"},{"issue":"2","key":"22197_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/FEMSEC\/FIAA255","volume":"97","author":"C Liu","year":"2021","unstructured":"Liu C, Cui Y, Li X, Yao M (2021) microeco: an R package for data mining in microbial community ecology. FEMS Microbiol Ecol 97(2):1\u201310. https:\/\/doi.org\/10.1093\/FEMSEC\/FIAA255","journal-title":"FEMS Microbiol Ecol"},{"issue":"9","key":"22197_CR29","doi-asserted-by":"publisher","first-page":"1869","DOI":"10.1111\/1365-2435.13882\/SUPPINFO","volume":"35","author":"S Mammola","year":"2021","unstructured":"Mammola S, Carmona CP, Guillerme T, Cardoso P (2021) Concepts and applications in functional diversity. Funct Ecol 35(9):1869\u20131885. https:\/\/doi.org\/10.1111\/1365-2435.13882\/SUPPINFO","journal-title":"Funct Ecol"},{"issue":"12","key":"22197_CR30","doi-asserted-by":"publisher","DOI":"10.1371\/JOURNAL.PONE.0190178","volume":"12","author":"AK Meneghine","year":"2017","unstructured":"Meneghine AK, Nielsen S, Varani AM, Thomas T, Alves LMC (2017) Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization. PLoS ONE 12(12):e0190189. https:\/\/doi.org\/10.1371\/JOURNAL.PONE.0190178","journal-title":"PLoS ONE"},{"issue":"1","key":"22197_CR31","doi-asserted-by":"publisher","first-page":"D726","DOI":"10.1093\/nar\/gkx967","volume":"46","author":"AL Mitchell","year":"2018","unstructured":"Mitchell AL, Scheremetjew M, Denise H, Potter S, Tarkowska A, Qureshi M, Salazar GA, Pesseat S, Boland MA, Hunter FMI, Ten Hoopen P, Alako B, Amid C, Wilkinson DJ, Curtis TP, Cochrane G, Finn RD (2018) EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Nucleic Acids Res 46(1):D726\u2013D735. https:\/\/doi.org\/10.1093\/nar\/gkx967","journal-title":"Nucleic Acids Res"},{"key":"22197_CR32","doi-asserted-by":"publisher","unstructured":"Mohiuddin M, Schellhorn HE (2015) Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis. Front Microbiol 6(SEP):971. https:\/\/doi.org\/10.3389\/FMICB.2015.00960\/BIBTEX","DOI":"10.3389\/FMICB.2015.00960\/BIBTEX"},{"key":"22197_CR33","doi-asserted-by":"publisher","unstructured":"Mreyoud Y, Song M, Lim J, Ahn TH (2022) MegaD: deep learning for rapid and accurate disease status prediction of metagenomic samples. Life 2022, Vol. 12, Page 669, 12(5):680. https:\/\/doi.org\/10.3390\/LIFE12050669","DOI":"10.3390\/LIFE12050669"},{"issue":"1","key":"22197_CR34","doi-asserted-by":"publisher","first-page":"1278","DOI":"10.3389\/FMICB.2021.657353\/BIBTEX","volume":"12","author":"M Mukherjee","year":"2021","unstructured":"Mukherjee M, Laird E, Gentry TJ, Brooks JP, Karthikeyan R (2021) Increased antimicrobial and multidrug resistance downstream of wastewater treatment plants in an urban watershed. Front Microbiol 12(1):1278. https:\/\/doi.org\/10.3389\/FMICB.2021.657353\/BIBTEX","journal-title":"Front Microbiol"},{"key":"22197_CR35","doi-asserted-by":"publisher","unstructured":"Palermo CN, Fulthorpe RR, Saati R, Short SM (2019) Metagenomic analysis of virus diversity and relative abundance in a eutrophic freshwater harbour. Viruses 2019, Vol. 11, Page 792, 11(9):802. https:\/\/doi.org\/10.3390\/V11090792","DOI":"10.3390\/V11090792"},{"issue":"4","key":"22197_CR36","doi-asserted-by":"publisher","first-page":"250092","DOI":"10.1371\/JOURNAL.PONE.0250092","volume":"16","author":"B Parrello","year":"2021","unstructured":"Parrello B, Butler R, Chlenski P, Pusch GD, Overbeek R (2021) Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC. PLoS ONE 16(4):250092\u2013250102. https:\/\/doi.org\/10.1371\/JOURNAL.PONE.0250092","journal-title":"PLoS ONE"},{"issue":"6","key":"22197_CR37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/GIGASCIENCE\/GIAA065","volume":"9","author":"H Rasche","year":"2020","unstructured":"Rasche H, Hiltemann S (2020) Galactic Circos: user-friendly Circos plots within the Galaxy platform. GigaScience 9(6):1\u20136. https:\/\/doi.org\/10.1093\/GIGASCIENCE\/GIAA065","journal-title":"GigaScience"},{"key":"22197_CR38","unstructured":"Revelle, W. (2021, September 22). PSYCH: Procedures for Psychological, Psychometric, and Personality Research. Cran R Projects; Comprehensive R Archive Network (CRAN). https:\/\/cran.r-project.org\/package=psych"},{"key":"22197_CR39","doi-asserted-by":"publisher","unstructured":"Sahani S, Hansa, Sharma YC, Kim TY (2022) Emerging contaminants in wastewater and surface water. New Trends in Emerging Environment Contaminants 9\u201330https:\/\/doi.org\/10.1007\/978-981-16-8367-1_2\/COVER\/","DOI":"10.1007\/978-981-16-8367-1_2\/COVER\/"},{"issue":"1","key":"22197_CR40","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1007\/s13337-016-0353-5","volume":"28","author":"M SaparbaevnaAlexyuk","year":"2017","unstructured":"SaparbaevnaAlexyuk M, SabirzhanovnaTurmagambetova A, GennadievichAlexyuk P, PavlinovichBogoyavlenskiy A, EleazarovichBerezin V (2017) Comparative study of viromes from freshwater samples of the Ile-Balkhash region of Kazakhstan captured through metagenomic analysis. VirusDisease 28(1):18\u201325. https:\/\/doi.org\/10.1007\/s13337-016-0353-5","journal-title":"VirusDisease"},{"key":"22197_CR41","doi-asserted-by":"publisher","first-page":"1924","DOI":"10.1016\/J.MATPR.2022.02.308","volume":"57","author":"B Shilpa","year":"2022","unstructured":"Shilpa B, N., & Meena, S. S. (2022) Exploring the plastic degrading ability of microbial communities through metagenomic approach. Materials Today: Proceedings 57:1924\u20131932. https:\/\/doi.org\/10.1016\/J.MATPR.2022.02.308","journal-title":"Materials Today: Proceedings"},{"issue":"1","key":"22197_CR42","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-019-46631-9","volume":"9","author":"MN Sohail","year":"2019","unstructured":"Sohail MN, Jiadong R, Uba MM, Irshad M, Iqbal W, Arshad J, John AV (2019a) A hybrid Forecast Cost Benefit Classification of diabetes mellitus prevalence based on epidemiological study on Real-life patient\u2019s data. Sci Rep 9(1):1\u201310. https:\/\/doi.org\/10.1038\/s41598-019-46631-9","journal-title":"Sci Rep"},{"issue":"9","key":"22197_CR43","doi-asserted-by":"publisher","first-page":"1581","DOI":"10.3390\/ijerph16091581","volume":"16","author":"MN Sohail","year":"2019","unstructured":"Sohail MN, Ren J, Muhammad MU (2019b) A euclidean group assessment on semi-supervised clustering for healthcare clinical implications based on real-life data. Int J Environ Res Public Health 16(9):1581\u20131593. https:\/\/doi.org\/10.3390\/ijerph16091581","journal-title":"Int J Environ Res Public Health"},{"key":"22197_CR44","unstructured":"Sohail N, Jiadong R, Musa Uba M, Irshad M, Khan A (2018) Classification and cost benefit analysis of diabetes mellitus dominance. Int J Comput Sci Netw Secur 18(10):29\u201335. http:\/\/paper.ijcsns.org\/07_book\/201810\/20181006.pdf"},{"issue":"1","key":"22197_CR45","doi-asserted-by":"publisher","first-page":"734","DOI":"10.1016\/J.ENVPOL.2018.01.107","volume":"236","author":"E Szekeres","year":"2018","unstructured":"Szekeres E, Chiriac CM, Baricz A, Sz\u0151ke-Nagy T, Lung I, Soran ML, Rudi K, Dragos N, Coman C (2018) Investigating antibiotics, antibiotic resistance genes, and microbial contaminants in groundwater in relation to the proximity of urban areas. Environ Pollut 236(1):734\u2013744. https:\/\/doi.org\/10.1016\/J.ENVPOL.2018.01.107","journal-title":"Environ Pollut"},{"issue":"1","key":"22197_CR46","doi-asserted-by":"publisher","first-page":"184","DOI":"10.1016\/J.COPBIO.2021.01.019","volume":"67","author":"N Ta\u015f","year":"2021","unstructured":"Ta\u015f N, de Jong AE, Li Y, Trubl G, Xue Y, Dove NC (2021) Metagenomic tools in microbial ecology research. Curr Opin Biotechnol 67(1):184\u2013191. https:\/\/doi.org\/10.1016\/J.COPBIO.2021.01.019","journal-title":"Curr Opin Biotechnol"},{"key":"22197_CR47","unstructured":"Uba Muhammad M, Jiadong R, Sohail MN, Irshad M, Bilal M, Osi AA (2018) A logistic regression modeling on the prevalence of diabetes mellitus in the North Western Part of Nigeria. Benin J St 1(1):1\u201310. https:\/\/srg-uniben.org\/pdf\/1_bjs.pdf"},{"key":"22197_CR48","unstructured":"UNEP (2021) Progress on SDG 6 Indicators | UNEP - UN Environment Programme. UN Environment Programme. https:\/\/www.unep.org\/resources\/report\/progress-sdg-6-indicators"},{"issue":"1","key":"22197_CR49","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/S00248-021-01833-5\/FIGURES\/5","volume":"1","author":"FR Vieira","year":"2021","unstructured":"Vieira FR, Pecchia JA (2021) Bacterial community patterns in the Agaricus bisporus cultivation system, from compost raw materials to mushroom caps. Microb Ecol 1(1):1\u201313. https:\/\/doi.org\/10.1007\/S00248-021-01833-5\/FIGURES\/5","journal-title":"Microb Ecol"},{"key":"22197_CR50","doi-asserted-by":"publisher","unstructured":"White RA, Chan AM, Gavelis GS, Leander BS, Brady AL, Slater GF, Lim DSS, Suttle CA (2016) Metagenomic analysis suggests modern freshwater microbialites harbor a distinct core microbial community. Front Microbiol 6(JAN):1543. https:\/\/doi.org\/10.3389\/FMICB.2015.01531\/BIBTEX","DOI":"10.3389\/FMICB.2015.01531\/BIBTEX"},{"key":"22197_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41564-021-01039-y","volume":"2022","author":"F Wu","year":"2022","unstructured":"Wu F, Speth DR, Philosof A, Cr\u00e9mi\u00e8re A, Narayanan A, Barco RA, Connon SA, Amend JP, Antoshechkin IA, Orphan VJ (2022) Unique mobile elements and scalable gene flow at the prokaryote\u2013eukaryote boundary revealed by circularized Asgard archaea genomes. Nat Microbiol 2022:1\u201313. https:\/\/doi.org\/10.1038\/s41564-021-01039-y","journal-title":"Nat Microbiol"},{"issue":"1","key":"22197_CR52","doi-asserted-by":"publisher","first-page":"604","DOI":"10.1016\/J.BTRE.2021.E00604","volume":"29","author":"S Yadav","year":"2021","unstructured":"Yadav S, Kapley A (2021) Antibiotic resistance: global health crisis and metagenomics. Biotechnology Reports 29(1):604\u2013612. https:\/\/doi.org\/10.1016\/J.BTRE.2021.E00604","journal-title":"Biotechnology Reports"},{"key":"22197_CR53","unstructured":"Yang C, Chowdhury D, Zhang Z, Cheung WK, Lu A, Bian ZX, Zhang L (2021) A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data. Genomics 1(1):1\u20138. https:\/\/arxiv.org\/abs\/2109.00809v1"},{"key":"22197_CR54","doi-asserted-by":"publisher","unstructured":"Yoo K, Yoo H, Lee J, Choi EJ, Park J (2019) Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis. J Microbiol 2020 58(2):123\u2013130. https:\/\/doi.org\/10.1007\/S12275-020-9309-Y","DOI":"10.1007\/S12275-020-9309-Y"},{"issue":"2","key":"22197_CR55","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1007\/s12275-020-9309-y","volume":"58","author":"K Yoo","year":"2020","unstructured":"Yoo K, Yoo H, Lee J, Choi EJ, Park J (2020) Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis. J Microbiol 58(2):123\u2013130. https:\/\/doi.org\/10.1007\/s12275-020-9309-y","journal-title":"J Microbiol"},{"issue":"4","key":"22197_CR56","doi-asserted-by":"publisher","first-page":"2685","DOI":"10.1007\/S10989-021-10283-Z\/FIGURES\/8","volume":"27","author":"Q Yousafi","year":"2021","unstructured":"Yousafi Q, Amin H, Bibi S, Rafi R, Khan MS, Ali H, Masroor A (2021) Subtractive proteomics and immuno-informatics approaches for multi-peptide vaccine prediction against Klebsiella oxytoca and validation through in silico expression. Int J Pept Res Ther 27(4):2685\u20132701. https:\/\/doi.org\/10.1007\/S10989-021-10283-Z\/FIGURES\/8","journal-title":"Int J Pept Res Ther"},{"issue":"1","key":"22197_CR57","doi-asserted-by":"publisher","DOI":"10.3389\/FCELL.2021.736994","volume":"9","author":"Y Yuan","year":"2021","unstructured":"Yuan Y, Chen Y, Yao F, Zeng M, Xie Q, Shafiq M, Noman SM, Jiao X (2021) Microbiomes and resistomes in biopsy tissue and intestinal lavage fluid of colorectal cancer. Frontiers in Cell and Developmental Biology 9(1):737008. https:\/\/doi.org\/10.3389\/FCELL.2021.736994","journal-title":"Frontiers in Cell and Developmental Biology"},{"issue":"February","key":"22197_CR58","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2020.110590","volume":"266","author":"L Zhang","year":"2020","unstructured":"Zhang L, Zhong M, Li X, Lu W, Li J (2020) River bacterial community structure and co-occurrence patterns under the influence of different domestic sewage types. J Environ Manage 266(February):110590. https:\/\/doi.org\/10.1016\/j.jenvman.2020.110590","journal-title":"J Environ Manage"},{"issue":"1","key":"22197_CR59","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.watres.2020.116318","volume":"186","author":"R Zhao","year":"2020","unstructured":"Zhao R, Yu K, Zhang J, Zhang G, Huang J, Ma L, Deng C, Li X, Li B (2020) Deciphering the mobility and bacterial hosts of antibiotic resistance genes under antibiotic selection pressure by metagenomic assembly and binning approaches. Water Res 186(1):33\u201341. https:\/\/doi.org\/10.1016\/j.watres.2020.116318","journal-title":"Water Res"},{"key":"22197_CR60","doi-asserted-by":"publisher","unstructured":"Zhao Y, Zhang XX, Zhao Z, Duan C, Chen H, Wang M, Ren H, Yin Y, Ye L (2018) Metagenomic analysis revealed the prevalence of antibiotic resistance genes in the gut and living environment of freshwater shrimp. J Hazard Mater 350:10-18. https:\/\/doi.org\/10.1016\/J.JHAZMAT.2018.02.004","DOI":"10.1016\/J.JHAZMAT.2018.02.004"}],"container-title":["Environmental Science and Pollution Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-022-22197-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11356-022-22197-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-022-22197-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T02:49:02Z","timestamp":1675306142000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11356-022-22197-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,8,8]]},"references-count":60,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2023,1]]}},"alternative-id":["22197"],"URL":"https:\/\/doi.org\/10.1007\/s11356-022-22197-4","relation":{},"ISSN":["0944-1344","1614-7499"],"issn-type":[{"value":"0944-1344","type":"print"},{"value":"1614-7499","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,8,8]]},"assertion":[{"value":"8 February 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 July 2022","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 August 2022","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article does not contain any studies concerned with the experiment on human or animals.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}},{"value":"Not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}]}}