{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,6]],"date-time":"2026-03-06T12:04:33Z","timestamp":1772798673739,"version":"3.50.1"},"reference-count":88,"publisher":"Springer Science and Business Media LLC","issue":"25","license":[{"start":{"date-parts":[[2024,5,22]],"date-time":"2024-05-22T00:00:00Z","timestamp":1716336000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,5,22]],"date-time":"2024-05-22T00:00:00Z","timestamp":1716336000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Environ Sci Pollut Res"],"DOI":"10.1007\/s11356-024-33737-5","type":"journal-article","created":{"date-parts":[[2024,5,22]],"date-time":"2024-05-22T22:01:47Z","timestamp":1716415307000},"page":"37532-37551","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Phenanthrene metabolism in Panicum miliaceum: anatomical adaptations, degradation pathway, and computational analysis of a dioxygenase enzyme"],"prefix":"10.1007","volume":"31","author":[{"given":"Sarieh","family":"Tarigholizadeh","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5073-2686","authenticated-orcid":false,"given":"Rouhollah","family":"Motafakkerazad","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elham","family":"Mohajel Kazemi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maryam","family":"Kolahi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Seyed Yahya","family":"Salehi-Lisar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Svetlana","family":"Sushkova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tatiana","family":"Minkina","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,5,22]]},"reference":[{"key":"33737_CR1","doi-asserted-by":"publisher","first-page":"546","DOI":"10.1016\/j.chemosphere.2011.10.038","volume":"86","author":"GJ Ahammed","year":"2012","unstructured":"Ahammed GJ, Yuan H-L, Ogweno JO et al (2012) Brassinosteroid alleviates phenanthrene and pyrene phytotoxicity by increasing detoxification activity and photosynthesis in tomato. Chemosphere 86:546\u2013555. https:\/\/doi.org\/10.1016\/j.chemosphere.2011.10.038","journal-title":"Chemosphere"},{"key":"33737_CR2","doi-asserted-by":"publisher","first-page":"960","DOI":"10.1002\/jobm.202100218","volume":"61","author":"Z Ahsan","year":"2021","unstructured":"Ahsan Z, Kalsoom U, Bhatti HN et al (2021) Enzyme-assisted bioremediation approach for synthetic dyes and polycyclic aromatic hydrocarbons degradation. J Basic Microbiol 61:960\u2013981. https:\/\/doi.org\/10.1002\/jobm.202100218","journal-title":"J Basic Microbiol"},{"key":"33737_CR3","doi-asserted-by":"publisher","first-page":"3387","DOI":"10.1093\/bioinformatics\/btx548","volume":"33","author":"JJ Almagro Armenteros","year":"2017","unstructured":"Almagro Armenteros JJ, S\u00f8nderby CK, S\u00f8nderby SK et al (2017) DeepLoc: prediction of protein subcellular localization using deep learning. Bioinformatics 33:3387\u20133395. https:\/\/doi.org\/10.1093\/bioinformatics\/btx548","journal-title":"Bioinformatics"},{"key":"33737_CR4","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1016\/j.micron.2017.01.004","volume":"95","author":"WS Alves","year":"2017","unstructured":"Alves WS, Manoel EA, Santos NS et al (2017) Detection of polycyclic aromatic hydrocarbons (PAHs) in Medicago sativa L. by fluorescence microscopy. Micron 95:23\u201330. https:\/\/doi.org\/10.1016\/j.micron.2017.01.004","journal-title":"Micron"},{"key":"33737_CR5","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1080\/10520290802373354","volume":"83","author":"J Bond","year":"2008","unstructured":"Bond J, Donaldson L, Hill S, Hitchcock K (2008) Safranine fluorescent staining of wood cell walls. Biotech Histochem 83:161\u2013171. https:\/\/doi.org\/10.1080\/10520290802373354","journal-title":"Biotech Histochem"},{"key":"33737_CR6","doi-asserted-by":"publisher","first-page":"153","DOI":"10.3109\/10520295509114456","volume":"30","author":"JHD Bryan","year":"1955","unstructured":"Bryan JHD (1955) Differential staining with a mixture of safranin and fast green FCF. Stain Technol 30:153\u2013157. https:\/\/doi.org\/10.3109\/10520295509114456","journal-title":"Stain Technol"},{"key":"33737_CR7","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1016\/j.plantsci.2017.12.012","volume":"269","author":"CS Byrt","year":"2018","unstructured":"Byrt CS, Munns R, Burton RA et al (2018) Root cell wall solutions for crop plants in saline soils. Plant Sci 269:47\u201355. https:\/\/doi.org\/10.1016\/j.plantsci.2017.12.012","journal-title":"Plant Sci"},{"key":"33737_CR8","doi-asserted-by":"publisher","first-page":"384","DOI":"10.1016\/j.jhazmat.2009.12.044","volume":"177","author":"SA Cheema","year":"2010","unstructured":"Cheema SA, Khan MI, Shen C et al (2010) Degradation of phenanthrene and pyrene in spiked soils by single and combined plants cultivation. J Hazard Mater 177:384\u2013389. https:\/\/doi.org\/10.1016\/j.jhazmat.2009.12.044","journal-title":"J Hazard Mater"},{"key":"33737_CR9","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12864-016-3133-0","volume":"17","author":"A-S Dumas","year":"2016","unstructured":"Dumas A-S, Taconnat L, Barbas E et al (2016) Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure. BMC Genom 17:1\u201323. https:\/\/doi.org\/10.1186\/s12864-016-3133-0","journal-title":"BMC Genom"},{"key":"33737_CR10","doi-asserted-by":"publisher","first-page":"130","DOI":"10.1016\/j.chemosphere.2016.01.102","volume":"149","author":"J Dupuy","year":"2016","unstructured":"Dupuy J, Leglize P, Vincent Q et al (2016) Effect and localization of phenanthrene in maize roots. Chemosphere 149:130\u2013136. https:\/\/doi.org\/10.1016\/j.chemosphere.2016.01.102","journal-title":"Chemosphere"},{"key":"33737_CR11","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/j.aoas.2015.03.001","volume":"60","author":"AA El-Ghamery","year":"2015","unstructured":"El-Ghamery AA, Sadek AM, Abd Elbar OH (2015) Root anatomy of some species of Amaranthus (Amaranthaceae) and formation of successive cambia. Ann Agric Sci 60:53\u201360. https:\/\/doi.org\/10.1016\/j.aoas.2015.03.001","journal-title":"Ann Agric Sci"},{"key":"33737_CR12","first-page":"2503","volume":"3","author":"AD Eman","year":"2014","unstructured":"Eman AD, Bolus ST (2014) The effect of petroleum pollutants on the anatomical features of Avicennia marina (Forssk.) Vierh. Int J Sci Res 3:2503\u20132515","journal-title":"Int J Sci Res"},{"key":"33737_CR13","doi-asserted-by":"publisher","first-page":"D222","DOI":"10.1093\/nar\/gkt1223","volume":"42","author":"RD Finn","year":"2014","unstructured":"Finn RD, Bateman A, Clements J et al (2014) Pfam: the protein families database. Nucleic Acids Res 42:D222\u2013D230. https:\/\/doi.org\/10.1093\/nar\/gkt1223","journal-title":"Nucleic Acids Res"},{"key":"33737_CR14","doi-asserted-by":"publisher","first-page":"3784","DOI":"10.1093\/nar\/gkg563","volume":"31","author":"E Gasteiger","year":"2003","unstructured":"Gasteiger E, Gattiker A, Hoogland C et al (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31:3784\u20133788. https:\/\/doi.org\/10.1093\/nar\/gkg563","journal-title":"Nucleic Acids Res"},{"key":"33737_CR15","doi-asserted-by":"publisher","first-page":"125860","DOI":"10.1016\/j.biortech.2021.125860","volume":"341","author":"P Ghosh","year":"2021","unstructured":"Ghosh P, Mukherji S (2021) Environmental contamination by heterocyclic polynuclear aromatic hydrocarbons and their microbial degradation. Bioresour Technol 341:125860. https:\/\/doi.org\/10.1016\/j.biortech.2021.125860","journal-title":"Bioresour Technol"},{"key":"33737_CR16","doi-asserted-by":"publisher","first-page":"2049","DOI":"10.1007\/s00018-019-03388-8","volume":"77","author":"N Gigli-Bisceglia","year":"2020","unstructured":"Gigli-Bisceglia N, Engelsdorf T, Hamann T (2020) Plant cell wall integrity maintenance in model plants and crop species-relevant cell wall components and underlying guiding principles. Cell Mol Life Sci 77:2049\u20132077. https:\/\/doi.org\/10.1007\/s00018-019-03388-8","journal-title":"Cell Mol Life Sci"},{"key":"33737_CR17","doi-asserted-by":"publisher","first-page":"W350","DOI":"10.1093\/nar\/gku396","volume":"42","author":"T Goldberg","year":"2014","unstructured":"Goldberg T, Hecht M, Hamp T et al (2014) LocTree3 prediction of localization. Nucleic Acids Res 42:W350\u2013W355. https:\/\/doi.org\/10.1093\/nar\/gku396","journal-title":"Nucleic Acids Res"},{"key":"33737_CR18","doi-asserted-by":"publisher","first-page":"566","DOI":"10.1590\/S0103-90162011000500009","volume":"68","author":"MP Gomes","year":"2011","unstructured":"Gomes MP, de Nogueira M, OG, Castro EM de, Soares \u00c2M, (2011) Ecophysiological and anatomical changes due to uptake and accumulation of heavy metal in Brachiaria decumbens. Sci Agric 68:566\u2013573. https:\/\/doi.org\/10.1590\/S0103-90162011000500009","journal-title":"Sci Agric"},{"key":"33737_CR19","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1078\/1433-8319-00017","volume":"4","author":"UG Hacke","year":"2001","unstructured":"Hacke UG, Sperry JS (2001) Functional and ecological xylem anatomy. Perspect Pl Ecol, Evol Syst 4:97\u2013115. https:\/\/doi.org\/10.1078\/1433-8319-00017","journal-title":"Perspect Pl Ecol, Evol Syst"},{"key":"33737_CR20","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1039\/C7NP00060J","volume":"35","author":"JM Hagel","year":"2018","unstructured":"Hagel JM, Facchini PJ (2018) Expanding the roles for 2-oxoglutarate-dependent oxygenases in plant metabolism. Nat Prod Rep 35:721\u2013734. https:\/\/doi.org\/10.1039\/C7NP00060J","journal-title":"Nat Prod Rep"},{"key":"33737_CR21","doi-asserted-by":"publisher","first-page":"715","DOI":"10.3906\/bot-1208-1","volume":"37","author":"M Hameed","year":"2013","unstructured":"Hameed M, Nawaz T, Ashraf M et al (2013) Physioanatomical adaptations in response to salt stress in Sporobolus arabicus (Poaceae) from the Salt Range, Pakistan. Turk J Botany 37:715\u2013724. https:\/\/doi.org\/10.3906\/bot-1208-1","journal-title":"Turk J Botany"},{"key":"33737_CR22","doi-asserted-by":"publisher","first-page":"1302","DOI":"10.3390\/plants12061302","volume":"12","author":"J Han","year":"2023","unstructured":"Han J, Wang X, Niu S (2023) Genome-wide identification of 2-oxoglutarate and Fe (II)-dependent dioxygenase (2ODD-C) family genes and expression profiles under different abiotic stresses in Camellia sinensis (L.). Plants 12:1302. https:\/\/doi.org\/10.3390\/plants12061302","journal-title":"Plants"},{"key":"33737_CR23","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.jhazmat.2009.03.137","volume":"169","author":"AK Haritash","year":"2009","unstructured":"Haritash AK, Kaushik CP (2009) Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. J Hazard Mater 169:1\u201315. https:\/\/doi.org\/10.1016\/j.jhazmat.2009.03.137","journal-title":"J Hazard Mater"},{"key":"33737_CR24","doi-asserted-by":"publisher","unstructured":"Heipieper HJ, Pepi SCM, Baumgarten T, Eberlein C (2010) Surface properties and cellular energetics of bacteria in response to the presence of hydrocarbons. Handbook of hydrocarbon and lipid microbiology 1615. https:\/\/doi.org\/10.1007\/978-3-540-77587-4_113","DOI":"10.1007\/978-3-540-77587-4_113"},{"key":"33737_CR25","doi-asserted-by":"publisher","first-page":"268","DOI":"10.1016\/j.jhazmat.2016.08.058","volume":"321","author":"JC Hern\u00e1ndez-Vega","year":"2017","unstructured":"Hern\u00e1ndez-Vega JC, Cady B, Kayanja G et al (2017) Detoxification of polycyclic aromatic hydrocarbons (PAHs) in Arabidopsis thaliana involves a putative flavonol synthase. J Hazard Mater 321:268\u2013280. https:\/\/doi.org\/10.1016\/j.jhazmat.2016.08.058","journal-title":"J Hazard Mater"},{"key":"33737_CR26","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.jbiotec.2021.09.013","volume":"342","author":"JC Hern\u00e1ndez-Vega","year":"2021","unstructured":"Hern\u00e1ndez-Vega JC, Langford S, Hurtado DA et al (2021) Detoxification of phenanthrene in Arabidopsis thaliana involves a dioxygenase for auxin oxidation 1 (AtDAO1). J Biotechnol 342:36\u201344. https:\/\/doi.org\/10.1016\/j.jbiotec.2021.09.013","journal-title":"J Biotechnol"},{"key":"33737_CR27","doi-asserted-by":"publisher","first-page":"29","DOI":"10.14720\/aas.2019.113.1.03","volume":"113","author":"M Houshani","year":"2019","unstructured":"Houshani M, Salehi-Lisar SY, Movafeghi A, Motafakkerazad R (2019) Growth and antioxidant system responses of maize (Zea mays L.) seedling to different concentration of pyrene in a controlled environment. Acta Agric Slov 113:29\u201339. https:\/\/doi.org\/10.14720\/aas.2019.113.1.03","journal-title":"Acta Agric Slov"},{"key":"33737_CR28","doi-asserted-by":"publisher","first-page":"20130355","DOI":"10.1098\/rstb.2013.0355","volume":"369","author":"Y Jiao","year":"2014","unstructured":"Jiao Y, Paterson AH (2014) Polyploidy-associated genome modifications during land plant evolution. Phil Trans Royal Soc b: Biol Sci 369:20130355. https:\/\/doi.org\/10.1098\/rstb.2013.0355","journal-title":"Phil Trans Royal Soc b: Biol Sci"},{"key":"33737_CR29","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2229-10-210","volume":"10","author":"F Kang","year":"2010","unstructured":"Kang F, Chen D, Gao Y, Zhang Y (2010) Distribution of polycyclic aromatic hydrocarbons in subcellular root tissues of ryegrass (Lolium multiflorum Lam.). BMC Plant Biol 10:1\u20137. https:\/\/doi.org\/10.1186\/1471-2229-10-210","journal-title":"BMC Plant Biol"},{"key":"33737_CR30","doi-asserted-by":"publisher","first-page":"127058","DOI":"10.1016\/j.jhazmat.2021.127058","volume":"423","author":"H Karimi-Maleh","year":"2022","unstructured":"Karimi-Maleh H, Karimi F, Fu L et al (2022) Cyanazine herbicide monitoring as a hazardous substance by a DNA nanostructure biosensor. J Hazard Mater 423:127058. https:\/\/doi.org\/10.1016\/j.jhazmat.2021.127058","journal-title":"J Hazard Mater"},{"key":"33737_CR31","doi-asserted-by":"publisher","first-page":"1173","DOI":"10.1016\/j.tplants.2022.06.003","volume":"27","author":"D Kawa","year":"2022","unstructured":"Kawa D, Brady SM (2022) Root cell types as an interface for biotic interactions. Trends Plant Sci 27:1173\u20131186. https:\/\/doi.org\/10.1016\/j.tplants.2022.06.003","journal-title":"Trends Plant Sci"},{"key":"33737_CR32","doi-asserted-by":"publisher","first-page":"328","DOI":"10.1111\/tpj.12479","volume":"78","author":"Y Kawai","year":"2014","unstructured":"Kawai Y, Ono E, Mizutani M (2014) Evolution and diversity of the 2\u2013oxoglutarate-dependent dioxygenase superfamily in plants. Plant J 78:328\u2013343. https:\/\/doi.org\/10.1111\/tpj.12479","journal-title":"Plant J"},{"key":"33737_CR33","doi-asserted-by":"publisher","first-page":"396","DOI":"10.3906\/bot-2001-22","volume":"44","author":"M Kazemian","year":"2020","unstructured":"Kazemian M, Kazemi EM, Kolahi M, Omran VG (2020) Identification and in silico analysis of PHANTASTICA gene in Saintpaulia ionantha H. Wendl (Gesneriaceae). Turk J Botany 44:396\u2013409. https:\/\/doi.org\/10.3906\/bot-2001-22","journal-title":"Turk J Botany"},{"key":"33737_CR34","doi-asserted-by":"publisher","first-page":"845","DOI":"10.1038\/nprot.2015.053","volume":"10","author":"LA Kelley","year":"2015","unstructured":"Kelley LA, Mezulis S, Yates CM et al (2015) The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc 10:845\u2013858. https:\/\/doi.org\/10.1038\/nprot.2015.053","journal-title":"Nat Protoc"},{"key":"33737_CR35","doi-asserted-by":"publisher","first-page":"1198","DOI":"10.1104\/pp.125.3.1198","volume":"125","author":"EA Kellogg","year":"2001","unstructured":"Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125:1198\u20131205. https:\/\/doi.org\/10.1104\/pp.125.3.1198","journal-title":"Plant Physiol"},{"key":"33737_CR36","doi-asserted-by":"publisher","first-page":"108746","DOI":"10.1016\/j.cbi.2019.108746","volume":"311","author":"S Khataee","year":"2019","unstructured":"Khataee S, Dehghan G, Rashtbari S et al (2019) Synergistic inhibition of catalase activity by food colorants sunset yellow and curcumin: an experimental and MLSD simulation approach. Chem Biol Interact 311:108746. https:\/\/doi.org\/10.1016\/j.cbi.2019.108746","journal-title":"Chem Biol Interact"},{"key":"33737_CR37","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1093\/bib\/bbn017","volume":"9","author":"S Kumar","year":"2008","unstructured":"Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9:299\u2013306. https:\/\/doi.org\/10.1093\/bib\/bbn017","journal-title":"Brief Bioinform"},{"key":"33737_CR38","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870\u20131874. https:\/\/doi.org\/10.1093\/molbev\/msw054","journal-title":"Mol Biol Evol"},{"key":"33737_CR39","first-page":"458","volume":"55","author":"E Kvesitadze","year":"2009","unstructured":"Kvesitadze E, Sadunishvili T, Kvesitadze G (2009) Mechanisms of organic contaminants uptake and degradation in plants. World Acad Sci Eng Technol 55:458\u2013468","journal-title":"World Acad Sci Eng Technol"},{"key":"33737_CR40","doi-asserted-by":"publisher","first-page":"768","DOI":"10.1021\/ac50042a043","volume":"51","author":"ML Lee","year":"1979","unstructured":"Lee ML, Vassilaros DL, White CM (1979) Retention indices for programmed-temperature capillary-column gas chromatography of polycyclic aromatic hydrocarbons. Anal Chem 51:768\u2013773. https:\/\/doi.org\/10.1021\/ac50042a043","journal-title":"Anal Chem"},{"key":"33737_CR41","doi-asserted-by":"publisher","first-page":"892","DOI":"10.1016\/j.jhazmat.2007.09.041","volume":"153","author":"S-H Lee","year":"2008","unstructured":"Lee S-H, Lee W-S, Lee C-H, Kim J-G (2008) Degradation of phenanthrene and pyrene in rhizosphere of grasses and legumes. J Hazard Mater 153:892\u2013898. https:\/\/doi.org\/10.1016\/j.jhazmat.2007.09.041","journal-title":"J Hazard Mater"},{"key":"33737_CR42","doi-asserted-by":"publisher","first-page":"26136","DOI":"10.1007\/s11356-017-0419-y","volume":"24","author":"X Liao","year":"2017","unstructured":"Liao X, Wu Z, Ma X et al (2017) Interactive effects of PAHs with different rings and As on their uptake, transportation, and localization in As hyperaccumulator. Environ Sci Pollut Res 24:26136\u201326141. https:\/\/doi.org\/10.1007\/s11356-017-0419-y","journal-title":"Environ Sci Pollut Res"},{"key":"33737_CR43","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1007\/s11104-021-05010-y","volume":"466","author":"JP Lynch","year":"2021","unstructured":"Lynch JP, Strock CF, Schneider HM et al (2021) Root anatomy and soil resource capture. Plant Soil 466:21\u201363. https:\/\/doi.org\/10.1007\/s11104-021-05010-y","journal-title":"Plant Soil"},{"key":"33737_CR44","unstructured":"Ma L, Zhang Y, Gao W (2021) 2-Oxoglutarate-dependent dioxygenases in plants: biosynthesis, mechanism and evolution. \u4e9a\u6d32\u4f20\u7edf\u533b\u836f 16:240\u2013253"},{"key":"33737_CR45","doi-asserted-by":"publisher","first-page":"20702","DOI":"10.1074\/jbc.R115.648691","volume":"290","author":"S Martinez","year":"2015","unstructured":"Martinez S, Hausinger RP (2015) Catalytic mechanisms of Fe (II)-and 2-oxoglutarate-dependent oxygenases. J Biol Chem 290:20702\u201320711. https:\/\/doi.org\/10.1074\/jbc.R115.648691","journal-title":"J Biol Chem"},{"key":"33737_CR46","doi-asserted-by":"publisher","unstructured":"Mawad AMM, Hesham AE-L, Khan S, Nawab J (2020) The role of fungi and genes for the removal of environmental contaminants from water\/wastewater treatment plants. Fungal Biotech Bioeng 349\u2013370. https:\/\/doi.org\/10.1007\/978-3-030-41870-0_15","DOI":"10.1007\/978-3-030-41870-0_15"},{"key":"33737_CR47","doi-asserted-by":"publisher","first-page":"813","DOI":"10.1104\/pp.18.01223","volume":"179","author":"AJ Mitchell","year":"2019","unstructured":"Mitchell AJ, Weng J-K (2019) Unleashing the synthetic power of plant oxygenases: from mechanism to application. Plant Physiol 179:813\u2013829. https:\/\/doi.org\/10.1104\/pp.18.01223","journal-title":"Plant Physiol"},{"key":"33737_CR48","first-page":"306","volume":"1","author":"M Mohammadi","year":"2017","unstructured":"Mohammadi M, Dadpoor M-R, Aliasgharpoor M et al (2017) Histological study on the stages of pollination and fertilization in the cultivars of red seedless and ghezel-ozum grapes. Biosci Biotechnol Res Commun 1:306\u2013317","journal-title":"Biosci Biotechnol Res Commun"},{"key":"33737_CR49","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s10661-019-7240-7","volume":"191","author":"NS Mohammadi Jahromi","year":"2019","unstructured":"Mohammadi Jahromi NS, Jonoubi P, Majd A, Dehghani M (2019) Root structural changes of two remediator plants as the first defective barrier against industrial pollution, and their hyperaccumulation ability. Environ Monit Assess 191:1\u201313. https:\/\/doi.org\/10.1007\/s10661-019-7240-7","journal-title":"Environ Monit Assess"},{"key":"33737_CR50","doi-asserted-by":"publisher","first-page":"2305","DOI":"10.3390\/plants10112305","volume":"10","author":"L Molina","year":"2021","unstructured":"Molina L, Segura A (2021) Biochemical and metabolic plant responses toward polycyclic aromatic hydrocarbons and heavy metals present in atmospheric pollution. Plants 10:2305. https:\/\/doi.org\/10.3390\/plants10112305","journal-title":"Plants"},{"key":"33737_CR51","doi-asserted-by":"publisher","first-page":"28075","DOI":"10.1007\/s11356-018-2808-2","volume":"25","author":"Y Olaranont","year":"2018","unstructured":"Olaranont Y, Stewart AB, Traiperm P (2018) Physiological and anatomical responses of a common beach grass to crude oil pollution. Environ Sci Pollut Res 25:28075\u201328085. https:\/\/doi.org\/10.1007\/s11356-018-2808-2","journal-title":"Environ Sci Pollut Res"},{"key":"33737_CR52","unstructured":"Omosun G, Edeoga HO, Markson AA (2009) Anatomical changes due to crude oil pollution and its heavy metals component in three Mucuna species.  Recent Research in Science and Technology 1(6)"},{"key":"33737_CR53","doi-asserted-by":"publisher","first-page":"100","DOI":"10.1016\/j.biochi.2018.10.007","volume":"156","author":"Y Panahi","year":"2019","unstructured":"Panahi Y, Yekta R, Dehghan G et al (2019a) Activation of catalase via co-administration of aspirin and pioglitazone: experimental and MLSD simulation approaches. Biochimie 156:100\u2013108. https:\/\/doi.org\/10.1016\/j.biochi.2018.10.007","journal-title":"Biochimie"},{"key":"33737_CR54","doi-asserted-by":"publisher","first-page":"306","DOI":"10.1016\/j.ijbiomac.2018.10.183","volume":"122","author":"Y Panahi","year":"2019","unstructured":"Panahi Y, Yekta R, Dehghan G et al (2019b) Aspirin in retrieving the inactivated catalase to active form: displacement of one inhibitor with a protective agent. Int J Biol Macromol 122:306\u2013311. https:\/\/doi.org\/10.1016\/j.ijbiomac.2018.10.183","journal-title":"Int J Biol Macromol"},{"key":"33737_CR55","doi-asserted-by":"publisher","first-page":"551","DOI":"10.1038\/nature07723","volume":"457","author":"AH Paterson","year":"2009","unstructured":"Paterson AH, Bowers JE, Bruggmann R et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457:551\u2013556. https:\/\/doi.org\/10.1038\/nature07723","journal-title":"Nature"},{"key":"33737_CR56","doi-asserted-by":"publisher","unstructured":"Pathak B, Gupta S, Verma R (2018) Biosorption and biodegradation of polycyclic aromatic hydrocarbons (PAHs) by microalgae. Green adsorbents for pollutant removal: fundamentals and design 215\u2013247. https:\/\/doi.org\/10.1007\/978-3-319-92111-2_7","DOI":"10.1007\/978-3-319-92111-2_7"},{"key":"33737_CR57","doi-asserted-by":"publisher","first-page":"21821","DOI":"10.1007\/s11356-017-9814-7","volume":"24","author":"P Punwong","year":"2017","unstructured":"Punwong P, Juprasong Y, Traiperm P (2017) Effects of an oil spill on the leaf anatomical characteristics of a beach plant (Terminalia catappa L.). Environ Sci Pollut Res 24:21821\u201321828. https:\/\/doi.org\/10.1007\/s11356-017-9814-7","journal-title":"Environ Sci Pollut Res"},{"key":"33737_CR58","doi-asserted-by":"publisher","first-page":"1629","DOI":"10.1007\/s10653-020-00527-0","volume":"43","author":"V Rajput","year":"2021","unstructured":"Rajput V, Minkina T, Semenkov I et al (2021) Phylogenetic analysis of hyperaccumulator plant species for heavy metals and polycyclic aromatic hydrocarbons. Environ Geochem Health 43:1629\u20131654. https:\/\/doi.org\/10.1007\/s10653-020-00527-0","journal-title":"Environ Geochem Health"},{"key":"33737_CR59","doi-asserted-by":"publisher","first-page":"147","DOI":"10.15171\/bi.2017.18","volume":"7","author":"S Rashtbari","year":"2017","unstructured":"Rashtbari S, Dehghan G, Yekta R, Jouyban A (2017) Investigation of the binding mechanism and inhibition of bovine liver catalase by quercetin: multi-spectroscopic and computational study. Bioimpacts 7:147. https:\/\/doi.org\/10.15171\/bi.2017.18","journal-title":"Bioimpacts"},{"key":"33737_CR60","doi-asserted-by":"publisher","first-page":"2977","DOI":"10.1016\/S0045-6535(97)10240-5","volume":"36","author":"K Rehmann","year":"1998","unstructured":"Rehmann K, Noll HP, Steinberg CEW, Kettrup AA (1998) Pyrene degradation by Mycobacterium sp. strain KR2. Chemosphere 36:2977\u20132992. https:\/\/doi.org\/10.1016\/S0045-6535(97)10240-5","journal-title":"Chemosphere"},{"key":"33737_CR61","doi-asserted-by":"publisher","first-page":"8632","DOI":"10.1016\/j.biortech.2010.06.121","volume":"101","author":"J-R Ren","year":"2010","unstructured":"Ren J-R, Zhao H-P, Song C et al (2010) Comparative transmembrane transports of four typical lipophilic organic chemicals. Bioresour Technol 101:8632\u20138638. https:\/\/doi.org\/10.1016\/j.biortech.2010.06.121","journal-title":"Bioresour Technol"},{"key":"33737_CR62","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2148-14-23","volume":"14","author":"BR Ruhfel","year":"2014","unstructured":"Ruhfel BR, Gitzendanner MA, Soltis PS et al (2014) From algae to angiosperms\u2013inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol 14:1\u201327. https:\/\/doi.org\/10.1186\/1471-2148-14-23","journal-title":"BMC Evol Biol"},{"key":"33737_CR63","doi-asserted-by":"publisher","first-page":"2033","DOI":"10.1007\/s00203-020-01929-5","volume":"202","author":"HAK Sakshi","year":"2020","unstructured":"Sakshi HAK (2020) A comprehensive review of metabolic and genomic aspects of PAH-degradation. Arch Microbiol 202:2033\u20132058. https:\/\/doi.org\/10.1007\/s00203-020-01929-5","journal-title":"Arch Microbiol"},{"key":"33737_CR64","doi-asserted-by":"publisher","first-page":"14908","DOI":"10.1073\/pnas.0902350106","volume":"106","author":"J Salse","year":"2009","unstructured":"Salse J, Abrouk M, Bolot S et al (2009) Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proc Natl Acad Sci 106:14908\u201314913. https:\/\/doi.org\/10.1073\/pnas.0902350106","journal-title":"Proc Natl Acad Sci"},{"key":"33737_CR65","volume-title":"Bioremediation for environmental sustainability: toxicity, mechanisms of contaminants degradation, detoxification and challenges","author":"G Saxena","year":"2020","unstructured":"Saxena G, Kumar V, Shah MP (2020) Bioremediation for environmental sustainability: toxicity, mechanisms of contaminants degradation, detoxification and challenges. Elsevier"},{"key":"33737_CR66","doi-asserted-by":"publisher","first-page":"925","DOI":"10.1080\/15226514.2014.1003784","volume":"17","author":"M Shiri","year":"2015","unstructured":"Shiri M, Rabhi M, El AA, Abdelly C (2015) The halophyte Cakile maritima reduces phenanthrene phytotoxicity. Int J Phytoremediation 17:925\u2013928. https:\/\/doi.org\/10.1080\/15226514.2014.1003784","journal-title":"Int J Phytoremediation"},{"key":"33737_CR67","doi-asserted-by":"publisher","first-page":"1059","DOI":"10.1016\/j.envpol.2016.11.037","volume":"220","author":"M Song","year":"2017","unstructured":"Song M, Yang Y, Jiang L et al (2017) Characterisation of the phenanthrene degradation-related genes and degrading ability of a newly isolated copper-tolerant bacterium. Environ Pollut 220:1059\u20131067. https:\/\/doi.org\/10.1016\/j.envpol.2016.11.037","journal-title":"Environ Pollut"},{"key":"33737_CR68","doi-asserted-by":"publisher","unstructured":"Srivastava S, Kumar M (2019) Biodegradation of polycyclic aromatic hydrocarbons (PAHs): a sustainable approach. Sustain Green Technol Environ Manag 111\u2013139. https:\/\/doi.org\/10.1007\/978-981-13-2772-8_6","DOI":"10.1007\/978-981-13-2772-8_6"},{"key":"33737_CR69","doi-asserted-by":"publisher","first-page":"242","DOI":"10.18393\/ejss.734607","volume":"9","author":"S Sushkova","year":"2020","unstructured":"Sushkova S, Minkina T, Tarigholizadeh S et al (2020) PAHs accumulation in soil-plant system of Phragmites australis Cav. in soil under long-term chemical contamination. Eurasian J Soil Sci 9:242\u2013253. https:\/\/doi.org\/10.18393\/ejss.734607","journal-title":"Eurasian J Soil Sci"},{"key":"33737_CR70","doi-asserted-by":"publisher","first-page":"2407","DOI":"10.1007\/s10653-020-00735-8","volume":"43","author":"S Sushkova","year":"2021","unstructured":"Sushkova S, Minkina T, Tarigholizadeh S et al (2021) Soil PAHs contamination effect on the cellular and subcellular organelle changes of Phragmites australis Cav. Environ Geochem Health 43:2407\u20132421. https:\/\/doi.org\/10.1007\/s10653-020-00735-8","journal-title":"Environ Geochem Health"},{"key":"33737_CR71","doi-asserted-by":"publisher","first-page":"3310","DOI":"10.1128\/aem.57.11.3310-3316.1991","volume":"57","author":"JB Sutherland","year":"1991","unstructured":"Sutherland JB, Selby AL, Freeman JP et al (1991) Metabolism of phenanthrene by Phanerochaete chrysosporium. Appl Environ Microbiol 57:3310\u20133316. https:\/\/doi.org\/10.1128\/aem.57.11.3310-3316.1991","journal-title":"Appl Environ Microbiol"},{"key":"33737_CR72","doi-asserted-by":"publisher","first-page":"473","DOI":"10.1002\/etc.5620220303","volume":"22","author":"HH Tabak","year":"2003","unstructured":"Tabak HH, Lazorchak JM, Lei L et al (2003) Studies on bioremediation of polycyclic aromatic hydrocarbon-contaminated sediments: bioavailability, biodegradability, and toxicity issues. Environ Toxicol Chem 22:473\u2013482. https:\/\/doi.org\/10.1002\/etc.5620220303","journal-title":"Environ Toxicol Chem"},{"key":"33737_CR73","doi-asserted-by":"publisher","first-page":"1","DOI":"10.14720\/aas.2021.117.2.1987","volume":"117","author":"S Tarigholizadeh","year":"2021","unstructured":"Tarigholizadeh S, Motafakkerazad R, Salehi-Lisar SY, Kazemi EM (2021) High resistance of Panicum miliaceum L. to phenanthrene toxicity based on growth response and antioxidant system assessment. Acta Agric Slov 117:1\u201313. https:\/\/doi.org\/10.14720\/aas.2021.117.2.1987","journal-title":"Acta Agric Slov"},{"key":"33737_CR74","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1021\/acs.jafc.3c05589","volume":"72","author":"S Tarigholizadeh","year":"2023","unstructured":"Tarigholizadeh S, Sushkova S, Rajput VD et al (2023b) Transfer and degradation of PAHs in the soil\u2013plant system: a review. J Agric Food Chem 72:46\u201364. https:\/\/doi.org\/10.1021\/acs.jafc.3c05589","journal-title":"J Agric Food Chem"},{"key":"33737_CR75","doi-asserted-by":"publisher","unstructured":"Tarigholizadeh S, Motafakkerazad R, Salehi-Lisar SY et al. (2023a) Phenanthrene uptake and translocation by Panicum miliaceum L. tissues: an experimental study in an artificial environment. Environ Geochem Health 1\u201312. https:\/\/doi.org\/10.1007\/s10653-022-01294-w","DOI":"10.1007\/s10653-022-01294-w"},{"key":"33737_CR76","doi-asserted-by":"publisher","unstructured":"Thacharodi A, Hassan S, Singh T et al (2023) Bioremediation of polycyclic aromatic hydrocarbons: an updated microbiological review. Chemosphere 138498. https:\/\/doi.org\/10.1016\/j.chemosphere.2023.138498","DOI":"10.1016\/j.chemosphere.2023.138498"},{"key":"33737_CR77","doi-asserted-by":"publisher","first-page":"7203","DOI":"10.1007\/s00253-019-09968-9","volume":"103","author":"G Torres-Farrad\u00e1","year":"2019","unstructured":"Torres-Farrad\u00e1 G, Manzano-Le\u00f3n AM, Rineau F et al (2019) Biodegradation of polycyclic aromatic hydrocarbons by native Ganoderma sp. strains: identification of metabolites and proposed degradation pathways. Appl Microbiol Biotechnol 103:7203\u20137215. https:\/\/doi.org\/10.1007\/s00253-019-09968-9","journal-title":"Appl Microbiol Biotechnol"},{"key":"33737_CR78","doi-asserted-by":"publisher","unstructured":"Valarmathi R, Mahadeva Swamy HK, Appunu C et al (2023) Anatomy of tolerance mechanisms in sugarcane crop to abiotic stresses. In: agro-industrial perspectives on sugarcane production under environmental stress. Springer, pp 107\u2013121. https:\/\/doi.org\/10.1007\/978-981-19-3955-6_6","DOI":"10.1007\/978-981-19-3955-6_6"},{"key":"33737_CR79","doi-asserted-by":"publisher","first-page":"6745","DOI":"10.3390\/molecules26216745","volume":"26","author":"Y Wang","year":"2021","unstructured":"Wang Y, Shi Y, Li K et al (2021) Roles of the 2-oxoglutarate-dependent dioxygenase superfamily in the flavonoid pathway: a review of the functional diversity of F3H, FNS I, FLS, and LDOX\/ANS. Molecules 26:6745. https:\/\/doi.org\/10.3390\/molecules26216745","journal-title":"Molecules"},{"key":"33737_CR80","doi-asserted-by":"publisher","unstructured":"Wang X-C, Zhao H-M (2007) Uptake and biodegradation of polycyclic aromatic hydrocarbons by marine seaweed. J Coast Res 1056\u20131061. https:\/\/doi.org\/10.2112\/JCR-SI50-191.1","DOI":"10.2112\/JCR-SI50-191.1"},{"key":"33737_CR81","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.crvi.2013.11.005","volume":"337","author":"H Wei","year":"2014","unstructured":"Wei H, Song S, Tian H, Liu T (2014) Effects of phenanthrene on seed germination and some physiological activities of wheat seedling. C R Biol 337:95\u2013100. https:\/\/doi.org\/10.1016\/j.crvi.2013.11.005","journal-title":"C R Biol"},{"key":"33737_CR82","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2229-10-59","volume":"10","author":"D Weisman","year":"2010","unstructured":"Weisman D, Alkio M, Col\u00f3n-Carmona A (2010) Transcriptional responses to polycyclic aromatic hydrocarbon-induced stress in Arabidopsis thaliana reveal the involvement of hormone and defense signaling pathways. BMC Plant Biol 10:1\u201313. https:\/\/doi.org\/10.1186\/1471-2229-10-59","journal-title":"BMC Plant Biol"},{"key":"33737_CR83","doi-asserted-by":"publisher","first-page":"3695","DOI":"10.1021\/es048136a","volume":"39","author":"E Wild","year":"2005","unstructured":"Wild E, Dent J, Thomas GO, Jones KC (2005) Direct observation of organic contaminant uptake, storage, and metabolism within plant roots. Environ Sci Technol 39:3695\u20133702. https:\/\/doi.org\/10.1021\/es048136a","journal-title":"Environ Sci Technol"},{"key":"33737_CR84","doi-asserted-by":"publisher","first-page":"907","DOI":"10.1021\/es0515046","volume":"40","author":"E Wild","year":"2006","unstructured":"Wild E, Dent J, Thomas GO, Jones KC (2006) Visualizing the air-to-leaf transfer and within-leaf movement and distribution of phenanthrene: further studies utilizing two-photon excitation microscopy. Environ Sci Technol 40:907\u2013916. https:\/\/doi.org\/10.1021\/es0515046","journal-title":"Environ Sci Technol"},{"key":"33737_CR85","doi-asserted-by":"publisher","first-page":"2299","DOI":"10.1093\/jxb\/erx113","volume":"68","author":"Z Xu","year":"2017","unstructured":"Xu Z, Song J (2017) The 2-oxoglutarate-dependent dioxygenase superfamily participates in tanshinone production in Salvia miltiorrhiza. J Exp Bot 68:2299\u20132308. https:\/\/doi.org\/10.1093\/jxb\/erx113","journal-title":"J Exp Bot"},{"key":"33737_CR86","doi-asserted-by":"publisher","first-page":"138707","DOI":"10.1016\/j.chemosphere.2023.138707","volume":"329","author":"V Yamini","year":"2023","unstructured":"Yamini V, Rajeswari VD (2023) Metabolic capacity to alter polycyclic aromatic hydrocarbons and its microbe-mediated remediation. Chemosphere 329:138707. https:\/\/doi.org\/10.1016\/j.chemosphere.2023.138707","journal-title":"Chemosphere"},{"key":"33737_CR87","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1038\/nmeth.3213","volume":"12","author":"J Yang","year":"2015","unstructured":"Yang J, Yan R, Roy A et al (2015) The I-TASSER Suite: protein structure and function prediction. Nat Methods 12:7\u20138. https:\/\/doi.org\/10.1038\/nmeth.3213","journal-title":"Nat Methods"},{"key":"33737_CR88","doi-asserted-by":"publisher","first-page":"123112","DOI":"10.1016\/j.envpol.2023.123112","volume":"343","author":"J Zhu","year":"2024","unstructured":"Zhu J, Chen R, Huang C et al (2024) Exogenous auxin alters the polycyclic aromatic hydrocarbons apoplastic and symplastic uptake by wheat seedling roots. Environ Pollut 343:123112. https:\/\/doi.org\/10.1016\/j.envpol.2023.123112","journal-title":"Environ Pollut"}],"container-title":["Environmental Science and Pollution Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-024-33737-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11356-024-33737-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-024-33737-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,17]],"date-time":"2024-06-17T12:03:42Z","timestamp":1718625822000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11356-024-33737-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,5,22]]},"references-count":88,"journal-issue":{"issue":"25","published-online":{"date-parts":[[2024,5]]}},"alternative-id":["33737"],"URL":"https:\/\/doi.org\/10.1007\/s11356-024-33737-5","relation":{},"ISSN":["1614-7499"],"issn-type":[{"value":"1614-7499","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,5,22]]},"assertion":[{"value":"17 January 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 May 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"22 May 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}},{"value":"All authors have agreed to publish this article.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}]}}