{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,9]],"date-time":"2026-07-09T04:15:23Z","timestamp":1783570523739,"version":"3.55.0"},"reference-count":248,"publisher":"Springer Science and Business Media LLC","issue":"20","license":[{"start":{"date-parts":[[2026,6,20]],"date-time":"2026-06-20T00:00:00Z","timestamp":1781913600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2026,6,20]],"date-time":"2026-06-20T00:00:00Z","timestamp":1781913600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/100018802","name":"Ag\u00e8ncia Catalana de l\u2019Aigua","doi-asserted-by":"publisher","award":["FBG-200159"],"award-info":[{"award-number":["FBG-200159"]}],"id":[{"id":"10.13039\/100018802","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005774","name":"Universitat de Barcelona","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100005774","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Environ Sci Pollut Res"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Groundwater quality and ecosystem function are significantly influenced by aquifer-hyporheic zone systems, particularly in cases where such systems interact with influent rivers. This study investigates the impact of the geological structure on natural attenuation of chloroethenes in such connected systems. Our research focuses on understanding the complex interactions between geological features and microbial dynamics, shedding light on perchloroethylene transformation from DNAPL sources. Field investigations were conducted in an alluvial aquifer with fluvial paleochannels dominated by gravels and sands separated by silts and clays in floodplains. A multidisciplinary approach was employed, combining sediment geochemistry, chloroethene isotopic fractionation (\u03b4\n                    <jats:sup>13<\/jats:sup>\n                    C), and microbial community characterization. The results revealed distinct microbial assemblages associated with different geological structures, highlighting hydrogeological heterogeneity\u2019s role in shaping microbial diversity and activity. Specific microbial genera involved in chloroethene dechlorination across paleochannels, interchannel areas, and the hyporheic zone on the bank of an influent river were identified, illustrating differential microbial contributions to contaminant degradation. Furthermore, the study elucidated medium factors such as hydraulic conductivity and organic carbon availability that modulate microbial community structure and function. These findings enhance understanding of microbial-mediated contaminant attenuation in heterogeneous subsurface environments, informing groundwater remediation strategies and supporting sustainable groundwater management and environmental protection.\n                  <\/jats:p>","DOI":"10.1007\/s11356-026-37894-7","type":"journal-article","created":{"date-parts":[[2026,6,20]],"date-time":"2026-06-20T12:59:13Z","timestamp":1781960353000},"page":"9943-9977","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Control of alluvial aquifer architecture on reductive and oxidative dechlorination of chloroethenes"],"prefix":"10.1007","volume":"33","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5764-7217","authenticated-orcid":false,"given":"Diana","family":"Puigserver","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jofre","family":"Herrero","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amparo","family":"Cort\u00e9s","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alberto","family":"Mill\u00e1n","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beth L.","family":"Parker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jos\u00e9 Mar\u00eda","family":"Carmona","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,6,20]]},"reference":[{"issue":"22","key":"37894_CR1","doi-asserted-by":"publisher","first-page":"13077","DOI":"10.1021\/acs.est.8b02607","volume":"52","author":"S Aggarwal","year":"2018","unstructured":"Aggarwal S, Gomez-Smith CK, Jeon Y, LaPara TM, Waak MB, Hozalski RM (2018) Effects of chloramine and coupon material on biofilm abundance and community composition in bench-scale simulated water distribution systems and comparison with full-scale water mains. Environ Sci Technol 52(22):13077\u201313088. https:\/\/doi.org\/10.1021\/acs.est.8b02607","journal-title":"Environ Sci Technol"},{"key":"37894_CR2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jconhyd.2020.103657","volume":"234","author":"EJ Aguilar-Rangel","year":"2020","unstructured":"Aguilar-Rangel EJ, Prado BL, V\u00e1squez-Murrieta MS, Estrada-de Los Santos P, Siebe C, Falc\u00f3n LI, Santill\u00e1n J, Alc\u00e1ntara-Hern\u00e1ndez RJ (2020) Temporal analysis of the microbial communities in a nitrate-contaminated aquifer and the co-occurrence of anammox, n-damo and nitrous-oxide reducing bacteria. J Contam Hydrol 234:103657. https:\/\/doi.org\/10.1016\/j.jconhyd.2020.103657","journal-title":"J Contam Hydrol"},{"key":"37894_CR3","doi-asserted-by":"publisher","unstructured":"Albuquerque L, Fran\u00e7a L, Rainey FA, Schumann P, Nobre MF, da Costa MS (2011) Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov. Syst Appl Microbiol 34(8):595\u2013599. https:\/\/doi.org\/10.1016\/j.syapm.2011.07.001","DOI":"10.1016\/j.syapm.2011.07.001"},{"issue":"5","key":"37894_CR4","doi-asserted-by":"publisher","first-page":"774","DOI":"10.1016\/j.chemosphere.2011.06.063","volume":"85","author":"HI Amaral","year":"2011","unstructured":"Amaral HI, Aeppli C, Kipfer R, Berg M (2011) Assessing the transformation of chlorinated ethenes in aquifers with limited potential for natural attenuation: added values of compound-specific carbon isotope analysis and groundwater dating. Chemosphere 85(5):774\u2013781. https:\/\/doi.org\/10.1016\/j.chemosphere.2011.06.063","journal-title":"Chemosphere"},{"key":"37894_CR5","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1128\/aem.63.2.687-693.1997","volume":"63","author":"JE Anderson","year":"1997","unstructured":"Anderson JE, Mccarty PL (1997) Transformation yields of chlorinated ethenes by a methanotrophic mixed culture expressing particulate methane monooxygenase. Appl Environ Microbiol 63:687\u2013693. https:\/\/doi.org\/10.1128\/aem.63.2.687-693.1997","journal-title":"Appl Environ Microbiol"},{"key":"37894_CR6","doi-asserted-by":"publisher","first-page":"103519","DOI":"10.1016\/j.jconhyd.2019.103519","volume":"226","author":"K Antoniou","year":"2019","unstructured":"Antoniou K, Mamais D, Pantazidou M (2019) Reductive dechlorination of trichloroethene under different sulfate-reducing and electron donor conditions. J Contam Hydrol 226:103519, 103519. https:\/\/doi.org\/10.1016\/j.jconhyd.2019.103519","journal-title":"J Contam Hydrol"},{"key":"37894_CR7","doi-asserted-by":"publisher","unstructured":"Atashgahi S, Lu Y, & Smidt H (2016) Overview of known organohalide-respiring bacteria\u2014phylogenetic diversity and environmental distribution. Organohalide-respiring bacteria 63\u2013105. https:\/\/doi.org\/10.1007\/978-3-662-49875-0_5","DOI":"10.1007\/978-3-662-49875-0_5"},{"issue":"21","key":"37894_CR8","doi-asserted-by":"publisher","first-page":"6812","DOI":"10.1021\/ie070048m","volume":"46","author":"F Aulenta","year":"2007","unstructured":"Aulenta F, Canosa A, Leccese M, Petrangeli Papini M, Majone M, Viotti P (2007) Field study of in situ anaerobic bioremediation of a chlorinated solvent source zone. Ind Eng Chem Res 46(21):6812\u20136819. https:\/\/doi.org\/10.1021\/ie070048m","journal-title":"Ind Eng Chem Res"},{"issue":"5","key":"37894_CR9","doi-asserted-by":"publisher","first-page":"3941","DOI":"10.1002\/2016WR020048","volume":"53","author":"M Azizian","year":"2017","unstructured":"Azizian M, Boano F, Cook PL, Detwiler RL, Rippy MA, Grant SB (2017) Ambient groundwater flow diminishes nitrate processing in the hyporheic zone of streams. Water Resour Res 53(5):3941\u20133967. https:\/\/doi.org\/10.1002\/2016WR020048","journal-title":"Water Resour Res"},{"key":"37894_CR10","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1016\/j.gca.2012.02.023","volume":"85","author":"S Bae","year":"2012","unstructured":"Bae S, Lee W (2012) Enhanced reductive degradation of carbon tetrachloride by biogenic vivianite and Fe (II). Geochim Cosmochim Acta 85:170\u2013186. https:\/\/doi.org\/10.1016\/j.gca.2012.02.023","journal-title":"Geochim Cosmochim Acta"},{"key":"37894_CR11","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpetgeo.2021.104951","volume":"127","author":"E Bellizia","year":"2021","unstructured":"Bellizia E, Boaga J, Fontana A, D\u2019Alpaos A, Cassiani G, Ghinassi M (2021) Impact of genesis and abandonment processes of a fluvial meander on geometry and grain-size distribution of the associated point bar (Venetian Plain, Italy). Mar Pet Geol 127:104951. https:\/\/doi.org\/10.1016\/j.marpetgeo.2021.104951","journal-title":"Mar Pet Geol"},{"key":"37894_CR12","doi-asserted-by":"publisher","first-page":"103480","DOI":"10.1016\/j.jconhyd.2019.04.003","volume":"224","author":"EC Berns","year":"2019","unstructured":"Berns EC, Sanford RA, Valocchi AJ, Strathmann TJ, Schaefer CE, Werth CJ (2019) Contributions of biotic and abiotic pathways to anaerobic trichloroethene transformation in low permeability source zones. J Contam Hydrol 224:103480. https:\/\/doi.org\/10.1016\/j.jconhyd.2019.04.003","journal-title":"J Contam Hydrol"},{"issue":"7","key":"37894_CR13","doi-asserted-by":"publisher","first-page":"1406","DOI":"10.3390\/w15071406","volume":"15","author":"M Bertolini","year":"2023","unstructured":"Bertolini M, Zecchin S, Cavalca L (2023) Sequential anaerobic\/aerobic microbial transformation of chlorinated ethenes: use of sustainable approaches for aquifer decontamination. Water (Basel) 15(7):1406. https:\/\/doi.org\/10.3390\/w15071406","journal-title":"Water (Basel)"},{"issue":"4","key":"37894_CR14","doi-asserted-by":"publisher","first-page":"603","DOI":"10.1002\/2012RG000417","volume":"52","author":"F Boano","year":"2014","unstructured":"Boano F, Harvey JW, Marion A, Packman AI, Revelli R, Ridolfi L, W\u00f6rman A (2014) Hyporheic flow and transport processes: mechanisms, models, and biogeochemical implications. Rev Geophys 52(4):603\u2013679. https:\/\/doi.org\/10.1002\/2012RG000417","journal-title":"Rev Geophys"},{"issue":"5","key":"37894_CR15","doi-asserted-by":"publisher","first-page":"1377","DOI":"10.1007\/s10040-017-1550-z","volume":"25","author":"HC Bonsor","year":"2017","unstructured":"Bonsor HC, MacDonald AM, Ahmed KM, Burgess WG, Basharat M, Calow RC, Dixit A, Foster SSD, Gopal K, Lapworth DJ, Moench M, Mukherjee A, Rao MS, Shamsudduha M, Smith L, Taylor RG, Tucker J, van Steenbergen F, Yadav SK, Zahid A (2017) Hydrogeological typologies of the Indo-Gangetic basin alluvial aquifer. South Asia. Hydrogeol J 25(5):1377. https:\/\/doi.org\/10.1007\/s10040-017-1550-z","journal-title":"South Asia. Hydrogeol J"},{"issue":"1","key":"37894_CR16","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1146\/annurev.ecolsys.29.1.59","volume":"29","author":"AJ Boulton","year":"1998","unstructured":"Boulton AJ, Findlay S, Marmonier P, Stanley EH, Valett HM (1998) The functional significance of the hyporheic zone in streams and rivers. Annu Rev Ecol Syst 29(1):59\u201381. https:\/\/doi.org\/10.1146\/annurev.ecolsys.29.1.59","journal-title":"Annu Rev Ecol Syst"},{"key":"37894_CR17","first-page":"149","volume-title":"Handbook of bioremediation","author":"EJ Bouwer","year":"1994","unstructured":"Bouwer EJ et al (1994) Bioremediation of chlorinated solvents using alternate electron acceptors. In: Norris RD (ed) Handbook of bioremediation. Lewis Publishers, pp 149\u2013175"},{"issue":"2","key":"37894_CR18","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1080\/713607980","volume":"7","author":"PM Bradley","year":"2003","unstructured":"Bradley PM (2003) History and ecology of chloroethene biodegradation: a review. Bioremediat J 7(2):81\u2013109. https:\/\/doi.org\/10.1080\/713607980","journal-title":"Bioremediat J"},{"key":"37894_CR19","doi-asserted-by":"publisher","unstructured":"Bradley PM, Chapelle FH (2010) Biodegradation of chlorinated ethenes. In: Stroo, H., Ward, C. (eds) In situ remediation of chlorinated solvent plumes. SERDP\/ESTCP Environmental Remediation Technology. Springer, New York, NY, pp 39\u201367. https:\/\/doi.org\/10.1007\/978-1-4419-1401-9_3","DOI":"10.1007\/978-1-4419-1401-9_3"},{"issue":"4","key":"37894_CR20","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1111\/j.1745-6592.2011.01339.x","volume":"31","author":"PM Bradley","year":"2011","unstructured":"Bradley PM, Chapelle FH (2011) Microbial mineralization of dichloroethene and vinyl chloride under hypoxic conditions. Groundwater Monit Remediation 31(4):39\u201349. https:\/\/doi.org\/10.1111\/j.1745-6592.2011.01339.x","journal-title":"Groundwater Monit Remediation"},{"key":"37894_CR21","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1021\/es990785c","volume":"34","author":"PM Bradley","year":"2000","unstructured":"Bradley PM, Chapelle FH (2000) Aerobic microbial mineralization of dichloroethene as sole carbon substrate. Environ Sci Technol 34:221\u2013223. https:\/\/doi.org\/10.1021\/es990785c","journal-title":"Environ Sci Technol"},{"issue":"11","key":"37894_CR22","doi-asserted-by":"publisher","first-page":"1555","DOI":"10.1016\/j.chemosphere.2005.02.056","volume":"60","author":"K Broholm","year":"2005","unstructured":"Broholm K, Ludvigsen L, Jensen TF, \u00d8stergaard H (2005) Aerobic biodegradation of vinyl chloride and cis-1,2-dichloroethylene in aquifer sediments. Chemosphere 60(11):1555\u20131564. https:\/\/doi.org\/10.1016\/j.chemosphere.2005.02.056","journal-title":"Chemosphere"},{"issue":"1\u20134","key":"37894_CR23","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1016\/0022-1694(93)90104-H","volume":"149","author":"MW Burston","year":"1993","unstructured":"Burston MW, Nazari MM, Bishop PK, Lerner DN (1993) Pollution of groundwater in the Coventry region (UK) by chlorinated hydrocarbon solvents. J Hydrol 149(1\u20134):137\u2013161. https:\/\/doi.org\/10.1016\/0022-1694(93)90104-H","journal-title":"J Hydrol"},{"issue":"4","key":"37894_CR24","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1144\/1470-9236\/04-005","volume":"37","author":"SR Buss","year":"2004","unstructured":"Buss SR, Herbert AW, Morgan P, Thornton SF, Smith JWN (2004) A review of ammonium attenuation in soil and groundwater. Q J Eng Geol Hydrogeol 37(4):347\u2013359. https:\/\/doi.org\/10.1144\/1470-9236\/04-005","journal-title":"Q J Eng Geol Hydrogeol"},{"issue":"3","key":"37894_CR25","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1111\/gwmr.12015","volume":"33","author":"EC Butler","year":"2013","unstructured":"Butler EC, Chen L, Darlington R (2013) Transformation of trichloroethylene to predominantly non-regulated products under stimulated sulfate reducing conditions. Groundwater Monit Remediation 33(3):52\u201360. https:\/\/doi.org\/10.1111\/gwmr.12015","journal-title":"Groundwater Monit Remediation"},{"issue":"5","key":"37894_CR26","doi-asserted-by":"publisher","first-page":"3601","DOI":"10.1002\/2015WR017028","volume":"51","author":"MB C\u00e1rdenas","year":"2015","unstructured":"C\u00e1rdenas MB (2015) Hyporheic zone hydrologic science: a historical account of its emergence and a prospectus. Water Resour Res 51(5):3601\u20133616. https:\/\/doi.org\/10.1002\/2015WR017028","journal-title":"Water Resour Res"},{"key":"37894_CR27","doi-asserted-by":"publisher","first-page":"1031","DOI":"10.1099\/ijs.0.02964-0","volume":"54","author":"P Caumette","year":"2004","unstructured":"Caumette P, Guyoneaud R, Imhoff JF, S\u00fcling J, Gorlenko V (2004) Thiocapsa marina sp. nov., a novel, okenone-containing, purple sulfur bacterium isolated from brackish coastal and marine environments. Int J Syst Evol Microbiol 54:1031\u20131036. https:\/\/doi.org\/10.1099\/ijs.0.02964-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"10","key":"37894_CR28","doi-asserted-by":"publisher","first-page":"1667","DOI":"10.1007\/s10295-011-0956-1","volume":"38","author":"YC Chang","year":"2011","unstructured":"Chang YC, Ikeutsu K, Toyama T, Choi D, Kikuchi S (2011) Isolation and characterization of tetrachloroethylene-and cis-1, 2-dichloroethylene-dechlorinating propionibacteria. J Ind Microbiol Biotechnol 38(10):1667. https:\/\/doi.org\/10.1007\/s10295-011-0956-1","journal-title":"J Ind Microbiol Biotechnol"},{"key":"37894_CR29","first-page":"17","volume-title":"Symposium on natural attenuation of chlorinated organics in ground water","author":"FH Chapelle","year":"1996","unstructured":"Chapelle FH (1996) Identifying redox conditions that favor the natural attenuation of chlorinated ethenes in contaminated ground-water systems. Symposium on natural attenuation of chlorinated organics in ground water. US Environmental Protection Agency, Washington, D.C., pp 17\u201320"},{"key":"37894_CR30","doi-asserted-by":"publisher","unstructured":"Chapman SW, & Parker BL (2005) Plume persistence due to aquitard back diffusion following dense nonaqueous phase liquid source removal or isolation.\u00a0Water Resour Res 41(12). https:\/\/doi.org\/10.1029\/2005WR004224","DOI":"10.1029\/2005WR004224"},{"issue":"13","key":"37894_CR31","doi-asserted-by":"publisher","first-page":"4848","DOI":"10.1021\/es048592z","volume":"39","author":"MM Chartrand","year":"2005","unstructured":"Chartrand MM, Morrill PL, Lacrampe-Couloume G, Sherwood Lollar B (2005) Stable isotope evidence for biodegradation of chlorinated ethenes at a fractured bedrock site. Environ Sci Technol 39(13):4848\u20134856. https:\/\/doi.org\/10.1021\/es048592z","journal-title":"Environ Sci Technol"},{"issue":"12","key":"37894_CR32","doi-asserted-by":"publisher","first-page":"1345","DOI":"10.1099\/mic.0.000847","volume":"165","author":"J Chee-Sanford","year":"2019","unstructured":"Chee-Sanford J, Tian D, Sanford R (2019) Consumption of N2O and other N-cycle intermediates by Gemmatimonas aurantiaca strain T-27. Microbiol 165(12):1345\u20131354. https:\/\/doi.org\/10.1099\/mic.0.000847","journal-title":"Microbiol"},{"key":"37894_CR33","doi-asserted-by":"publisher","unstructured":"Chen C, Li L, Wang Y, Dong X, & Zhao FJ (2023) Methylotrophic methanogens and bacteria synergistically demethylate dimethylarsenate in paddy soil and alleviate rice straighthead disease. The ISME J 1\u201311. https:\/\/doi.org\/10.1038\/s41396-023-01498-7","DOI":"10.1038\/s41396-023-01498-7"},{"key":"37894_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s11270-020-04538-6","volume":"231","author":"TW Chen","year":"2020","unstructured":"Chen TW, Chang SC (2020) Potential microbial indicators for better bioremediation of an aquifer contaminated with vinyl chloride or 1,1-dichloroethene. Water Air Soil Pollut 231:1\u201323. https:\/\/doi.org\/10.1007\/s11270-020-04538-6","journal-title":"Water Air Soil Pollut"},{"issue":"1","key":"37894_CR35","doi-asserted-by":"publisher","first-page":"40283","DOI":"10.1038\/srep40283","volume":"7","author":"HM Chen","year":"2017","unstructured":"Chen HM, Wu MT (2017) Residential exposure to chlorinated hydrocarbons from groundwater contamination and the impairment of renal function-an ecological study. Sci Rep 7(1):40283. https:\/\/doi.org\/10.1038\/srep40283","journal-title":"Sci Rep"},{"key":"37894_CR36","doi-asserted-by":"publisher","first-page":"167323","DOI":"10.1016\/j.scitotenv.2023.167323","volume":"905","author":"Z Chi","year":"2023","unstructured":"Chi Z, Liu X, Li H, Liang S, Luo Y-H, Zhou C, Rittmann BE (2023) Co-metabolic biodegradation of chlorinated ethene in an oxygen- and ethane-based membrane biofilm reactor. Sci Total Environ 905:167323. https:\/\/doi.org\/10.1016\/j.scitotenv.2023.167323","journal-title":"Sci Total Environ"},{"key":"37894_CR37","doi-asserted-by":"publisher","first-page":"1965","DOI":"10.1099\/00207713-51-6-1965","volume":"51","author":"K-J Chin","year":"2001","unstructured":"Chin K-J, Liesack W, Janssen PH (2001) Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division \u2018Verrucomicrobia\u2019 isolated from rice paddy soil. Int J Syst Evol Microbiol 51:1965\u20131968. https:\/\/doi.org\/10.1099\/00207713-51-6-1965","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR38","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1023\/A:1015592115435","volume":"59","author":"O Christof","year":"2002","unstructured":"Christof O, Seifert R, Michaelis W (2002) Volatile halogenated organic compounds in European estuaries. Biogeochem 59:143\u2013160. https:\/\/doi.org\/10.1023\/A:1015592115435","journal-title":"Biogeochem"},{"key":"37894_CR39","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1244","author":"JR Cole","year":"2014","unstructured":"Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM (2014) Ribosomal database project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. https:\/\/doi.org\/10.1093\/nar\/gkt1244","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"37894_CR40","doi-asserted-by":"publisher","first-page":"2726","DOI":"10.1128\/AEM.68.6.2726-2730.2002","volume":"68","author":"NV Coleman","year":"2002","unstructured":"Coleman NV, Mattes TE, Gossett JM, Spain JC (2002) Biodegradation of cis- dichloroethene as the sole carbon source by a \u03b2-Proteobacterium. Appl Environ Microbiol 68(6):2726\u20132730. https:\/\/doi.org\/10.1128\/AEM.68.6.2726-2730.2002","journal-title":"Appl Environ Microbiol"},{"issue":"18","key":"37894_CR41","doi-asserted-by":"publisher","first-page":"5536","DOI":"10.1128\/JB.185.18.5536-5545.2003","volume":"185","author":"NV Coleman","year":"2003","unstructured":"Coleman NV, Spain JC (2003) Epoxyalkane: coenzyme M transferase in the ethene and vinyl chloride biodegradation pathways of Mycobacterium strain JS60. J Bacteriol 185(18):5536\u20135545. https:\/\/doi.org\/10.1128\/JB.185.18.5536-5545.2003","journal-title":"J Bacteriol"},{"issue":"2","key":"37894_CR42","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1111\/j.1745-6584.2004.tb02671.x","volume":"42","author":"BJ Conant Jr","year":"2004","unstructured":"Conant BJ Jr (2004) Delineating and quantifying ground water discharge zones using streambed temperatures. Groundwater 42(2):243\u2013257. https:\/\/doi.org\/10.1111\/j.1745-6584.2004.tb02671.x","journal-title":"Groundwater"},{"key":"37894_CR43","doi-asserted-by":"publisher","first-page":"609","DOI":"10.1016\/j.jhydrol.2019.04.050","volume":"574","author":"B Conant Jr","year":"2019","unstructured":"Conant B Jr, Robinson CE, Hinton MJ, Russell HA (2019) A framework for conceptualizing groundwater-surface water interactions and identifying potential impacts on water quality, water quantity, and ecosystems. J Hydrol 574:609\u2013627. https:\/\/doi.org\/10.1016\/j.jhydrol.2019.04.050","journal-title":"J Hydrol"},{"issue":"10","key":"37894_CR44","doi-asserted-by":"publisher","first-page":"1340","DOI":"10.1039\/c8em00286j","volume":"20","author":"JD Culpepper","year":"2018","unstructured":"Culpepper JD, Scherer MM, Robinson TC, Neumann A, Cwiertny D, Latta DE (2018) Reduction of PCE and TCE by magnetite revisited. Environ Sci Process Impacts 20(10):1340\u20131349. https:\/\/doi.org\/10.1039\/c8em00286j","journal-title":"Environ Sci Process Impacts"},{"key":"37894_CR45","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1007\/s002030050697","volume":"171","author":"DE Cummings","year":"1999","unstructured":"Cummings DE, Caccavo F Jr, Spring S, Rosenzweig RF (1999) Ferribacterium limneticum, gen. nov., sp. nov., an Fe (III)-reducing microorganism isolated from mining-impacted freshwater lake sediments. Arch Microbiol 171:183\u2013188. https:\/\/doi.org\/10.1007\/s002030050697","journal-title":"Arch Microbiol"},{"key":"37894_CR46","doi-asserted-by":"publisher","first-page":"136386","DOI":"10.1016\/j.scitotenv.2019.136386","volume":"710","author":"S Dangeti","year":"2020","unstructured":"Dangeti S, McBeth JM, Roshani B, Vyskocil JM, Rindall B, Chang W (2020) Microbial communities and biogenic Mn-oxides in an on-site biofiltration system for cold Fe-(II)-and Mn (II)-rich groundwater treatment. Sci Total Environ 710:136386. https:\/\/doi.org\/10.1016\/j.scitotenv.2019.136386","journal-title":"Sci Total Environ"},{"issue":"10","key":"37894_CR47","doi-asserted-by":"publisher","first-page":"6092","DOI":"10.1128\/AEM.70.10.6092-6097.200","volume":"70","author":"AS Danko","year":"2004","unstructured":"Danko AS, Luo M, Bagwell CE, Brigmon RL, Freedman DL (2004) Involvement of linear plasmids in aerobic biodegradation of vinyl chloride. Appl Environ Microbiol 70(10):6092\u20136097. https:\/\/doi.org\/10.1128\/AEM.70.10.6092-6097.200","journal-title":"Appl Environ Microbiol"},{"key":"37894_CR48","doi-asserted-by":"publisher","unstructured":"Davidov Y, Jurkevitch E (2004) Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov., comb. nov., and description of the Bacteriovorax\u2013Peredibacter clade as Bacteriovoracaceae fam. nov. Int J Syst Evol Microbiol 54(5):1439\u20131452. https:\/\/doi.org\/10.1099\/ijs.0.02978-0","DOI":"10.1099\/ijs.0.02978-0"},{"key":"37894_CR49","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1016\/j.scitotenv.2014.09.082","volume":"505","author":"E Dhivert","year":"2015","unstructured":"Dhivert E, Grosbois C, Rodrigues S, Desmet M (2015) Influence of fluvial environments on sediment archiving processes and temporal pollutant dynamics (Upper Loire River, France). Sci Total Environ 505:121\u2013136. https:\/\/doi.org\/10.1016\/j.scitotenv.2014.09.082","journal-title":"Sci Total Environ"},{"key":"37894_CR50","doi-asserted-by":"publisher","first-page":"13262","DOI":"10.1007\/s11356-017-8867-y","volume":"24","author":"I Dolinov\u00e1","year":"2017","unstructured":"Dolinov\u00e1 I, \u0160trojsov\u00e1 M, \u010cern\u00edk M, N\u011bme\u010dek J, Mach\u00e1\u010dkov\u00e1 J, \u0160evc\u016f A (2017) Microbial degradation of chloroethenes: a review. Environ Sci Pollut Res 24:13262\u201313283. https:\/\/doi.org\/10.1007\/s11356-017-8867-y","journal-title":"Environ Sci Pollut Res"},{"issue":"4","key":"37894_CR51","doi-asserted-by":"publisher","first-page":"300","DOI":"10.3109\/1040841X.2012.668134","volume":"38","author":"O Drzyzga","year":"2012","unstructured":"Drzyzga O (2012) The strengths and weaknesses of Gordonia: a review of an emerging genus with increasing biotechnological potential. Crit Rev Microbiol 38(4):300\u2013316. https:\/\/doi.org\/10.3109\/1040841X.2012.668134","journal-title":"Crit Rev Microbiol"},{"key":"37894_CR52","doi-asserted-by":"publisher","DOI":"10.1016\/j.micres.2020.126453","volume":"236","author":"JL Duan","year":"2020","unstructured":"Duan JL, Sun JW, Ji MM, Ma Y, Cui ZT, Tian RK, Xu PC, Sun WL, Yuan XZ (2020) Indicatory bacteria and chemical composition related to sulfur distribution in the river-lake systems. Microbiol Res 236:126453. https:\/\/doi.org\/10.1016\/j.micres.2020.126453","journal-title":"Microbiol Res"},{"key":"37894_CR53","doi-asserted-by":"publisher","DOI":"10.1016\/j.ceja.2022.100359","author":"N Dutta","year":"2022","unstructured":"Dutta N, Usman M, Ashraf MA, Luo G, Zhang S (2022) A critical review of recent advances in the bio-remediation of chlorinated substances by microbial dechlorinators. Chemical Engineering Journal Advances. https:\/\/doi.org\/10.1016\/j.ceja.2022.100359","journal-title":"Chemical Engineering Journal Advances"},{"key":"37894_CR54","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1016\/j.gca.2015.01.014","volume":"156","author":"F Einsiedl","year":"2015","unstructured":"Einsiedl F, Pilloni G, Ruth-Anneser B, Lueders T, Griebler C (2015) Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer. Geochim Cosmochim Acta 156:207\u2013221. https:\/\/doi.org\/10.1016\/j.gca.2015.01.014","journal-title":"Geochim Cosmochim Acta"},{"issue":"1\u20132","key":"37894_CR55","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1016\/j.jconhyd.2006.08.015","volume":"91","author":"PA Ellis","year":"2007","unstructured":"Ellis PA, Rivett MO (2007) Assessing the impact of VOC-contaminated groundwater on surface water at the city scale. J Contam Hydrol 91(1\u20132):107\u2013127. https:\/\/doi.org\/10.1016\/j.jconhyd.2006.08.015","journal-title":"J Contam Hydrol"},{"issue":"1\u20132","key":"37894_CR56","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1016\/j.jhydrol.2011.01.033","volume":"400","author":"I Engelhardt","year":"2011","unstructured":"Engelhardt I, Piepenbrink M, Trauth N, Stadler S, Kludt C, Schulz M, Sch\u00fcth C, Ternes TA (2011) Comparison of tracer methods to quantify hydrodynamic exchange within the hyporheic zone. J Hydrol 400(1\u20132):255\u2013266. https:\/\/doi.org\/10.1016\/j.jhydrol.2011.01.033","journal-title":"J Hydrol"},{"key":"37894_CR57","doi-asserted-by":"publisher","first-page":"1224","DOI":"10.1016\/j.scitotenv.2017.09.219","volume":"618","author":"J Epting","year":"2018","unstructured":"Epting J, Huggenberger P, Radny D, Hammes F, Hollender J, Page RM, Weber S, B\u00e4nninger D, Auckenthaler A (2018) Spatiotemporal scales of river-groundwater interaction\u2013the role of local interaction processes and regional groundwater regimes. Sci Total Environ 618:1224\u20131243. https:\/\/doi.org\/10.1016\/j.scitotenv.2017.09.219","journal-title":"Sci Total Environ"},{"key":"37894_CR58","doi-asserted-by":"publisher","first-page":"1119","DOI":"10.1007\/s12665-011-1361-9","volume":"65","author":"K Erning","year":"2012","unstructured":"Erning K, Grandel S, Dahmke A, Sch\u00e4fer D (2012) Simulation of DNAPL infiltration and spreading behaviour in the saturated zone at varying flow velocities and alternating subsurface geometries. Environ Earth Sci 65:1119\u20131131. https:\/\/doi.org\/10.1007\/s12665-011-1361-9","journal-title":"Environ Earth Sci"},{"key":"37894_CR59","doi-asserted-by":"publisher","first-page":"1103913","DOI":"10.3389\/fmicb.2022.1103913","volume":"13","author":"X Fan","year":"2023","unstructured":"Fan X, Nie L, Chen Z, Zheng Y, Wang G, Shi K (2023) Simultaneous removal of nitrogen and arsenite by heterotrophic nitrification and aerobic denitrification bacterium Hydrogenophaga sp. H7. Front Microbiol 13:1103913. https:\/\/doi.org\/10.3389\/fmicb.2022.1103913","journal-title":"Front Microbiol"},{"key":"37894_CR60","unstructured":"Field JA, & Sierra R (2001) Review of scientific literature on microbial dechlorination and chlorination of key chlorinated compounds.\u00a0Department of Chemical & Environmental Engineering University of Arizona, 37p"},{"issue":"7","key":"37894_CR61","doi-asserted-by":"publisher","first-page":"3617","DOI":"10.1021\/acs.est.5b05798","volume":"50","author":"M Findlay","year":"2016","unstructured":"Findlay M, Smoler DF, Fogel S, Mattes TE (2016) Aerobic vinyl chloride metabolism in groundwater microcosms by methanotrophic and etheneotrophic bacteria. Environ Sci Technol 50(7):3617\u20133625. https:\/\/doi.org\/10.1021\/acs.est.5b05798","journal-title":"Environ Sci Technol"},{"issue":"11","key":"37894_CR62","doi-asserted-by":"publisher","first-page":"e02894","DOI":"10.1128\/AEM.02894-17","volume":"84","author":"NW Fortney","year":"2018","unstructured":"Fortney NW, He S, Kulkarni A, Friedrich MW, Holz C, Boyd ES, Roden EE (2018) Stable isotope probing for microbial iron reduction in Chocolate Pots hot spring. Yellowstone National Park. Appl Environ Microbiol 84(11):e02894-17. https:\/\/doi.org\/10.1128\/AEM.02894-17","journal-title":"Yellowstone National Park. Appl Environ Microbiol"},{"issue":"6","key":"37894_CR63","doi-asserted-by":"publisher","first-page":"801","DOI":"10.1016\/j.chemosphere.2008.12.052","volume":"75","author":"A Franzetti","year":"2009","unstructured":"Franzetti A, Caredda P, Ruggeri C, La Colla P, Tamburini E, Papacchini M, Bestetti G (2009) Potential applications of surface active compounds by Gordonia sp.\u00a0strain BS29 in soil remediation technologies. Chemosphere 75(6):801\u2013807. https:\/\/doi.org\/10.1016\/j.chemosphere.2008.12.052","journal-title":"Chemosphere"},{"key":"37894_CR64","doi-asserted-by":"publisher","first-page":"236","DOI":"10.1016\/j.scitotenv.2014.09.083","volume":"505","author":"JG Freitas","year":"2015","unstructured":"Freitas JG, Rivett MO, Roche RS, Durrant M, Walker C, Tellam JH (2015) Heterogeneous hyporheic zone dechlorination of a TCE groundwater plume discharging to an urban river reach. Sci Total Environ 505:236\u2013252. https:\/\/doi.org\/10.1016\/j.scitotenv.2014.09.083","journal-title":"Sci Total Environ"},{"key":"37894_CR65","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1016\/j.scitotenv.2015.04.007","volume":"540","author":"A Freixa","year":"2016","unstructured":"Freixa A, Rubol S, Carles-Brangar\u00ed A, Fern\u00e0ndez-Garcia D, Butturini A, Sanchez-Vila X, Roman\u00ed AM (2016) The effects of sediment depth and oxygen concentration on the use of organic matter: an experimental study using an infiltration sediment tank. Sci Total Environ 540:20\u201331. https:\/\/doi.org\/10.1016\/j.scitotenv.2015.04.007","journal-title":"Sci Total Environ"},{"key":"37894_CR66","doi-asserted-by":"publisher","unstructured":"Fuerst JA (2017) Planctomycetes\u2014new models for microbial cells and activities. Microbial resources. Academic Press, pp 1\u201327. https:\/\/doi.org\/10.1016\/B978-0-12-804765-1.00001-1","DOI":"10.1016\/B978-0-12-804765-1.00001-1"},{"issue":"4","key":"37894_CR67","doi-asserted-by":"publisher","first-page":"267","DOI":"10.2323\/jgam.55.267","volume":"55","author":"Y Fukunaga","year":"2009","unstructured":"Fukunaga Y, Kurahashi M, Sakiyama Y, Ohuchi M, Yokota A, Harayama S (2009) Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes. J Gen Appl Microbiol 55(4):267\u2013275. https:\/\/doi.org\/10.2323\/jgam.55.267","journal-title":"J Gen Appl Microbiol"},{"issue":"2","key":"37894_CR68","doi-asserted-by":"publisher","first-page":"904","DOI":"10.1128\/AEM.71.2.904-911.2005","volume":"71","author":"H Futamata","year":"2005","unstructured":"Futamata H, Nagano Y, Watanabe K, Hiraishi A (2005) Unique kinetic properties of phenol-degrading Variovorax strains responsible for efficient trichloroethylene degradation in a chemostat enrichment culture. Appl Environ Microbiol 71(2):904\u2013911","journal-title":"Appl Environ Microbiol"},{"key":"37894_CR69","unstructured":"Futami, R, Mu\u00f1oz-Pomer A, Viu JM, Dom\u00ednguez-Escrib\u00e0, L., Covelli L, Bernet GP, J.M. S, Moya A, Llorens C (2011) GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases. Biotechvana Bioinforma 1\u20135. http:\/\/www.biotechvana.com\/software\/gpro"},{"issue":"4","key":"37894_CR70","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1016\/j.ecohyd.2022.08.003","volume":"22","author":"T Galia","year":"2022","unstructured":"Galia T, \u0160karpich V, Vala O (2022) Trees and shrubs as components of the storage of coarse particulate organic matter and instream wood in Mediterranean intermittent streams. Ecohydrol Hydrobiol 22(4):553\u2013564. https:\/\/doi.org\/10.1016\/j.ecohyd.2022.08.003","journal-title":"Ecohydrol Hydrobiol"},{"key":"37894_CR71","doi-asserted-by":"publisher","first-page":"959","DOI":"10.1007\/s00449-020-02292-x","volume":"43","author":"AJ Gao","year":"2020","unstructured":"Gao AJ, Zhu T, Liu C, Zhang J, Gao J, Zhang J, Cai M, Li Y (2020) Ammonium removal characteristics of heterotrophic nitrifying bacterium Pseudomonas stutzeri GEP-01 with potential for treatment of ammonium-rich wastewater. Bioprocess Biosyst Eng 43:959\u2013969. https:\/\/doi.org\/10.1007\/s00449-020-02292-x","journal-title":"Bioprocess Biosyst Eng"},{"issue":"5","key":"37894_CR72","doi-asserted-by":"publisher","first-page":"835","DOI":"10.1016\/j.cjche.2015.02.001","volume":"23","author":"Q Ge","year":"2015","unstructured":"Ge Q, Yue X, Wang G (2015) Simultaneous heterotrophic nitrification and aerobic denitrification at high initial phenol concentration by isolated bacterium Diaphorobacter sp. PD-7. Chin J Chem Eng 23(5):835\u2013841. https:\/\/doi.org\/10.1016\/j.cjche.2015.02.001","journal-title":"Chin J Chem Eng"},{"issue":"2","key":"37894_CR73","doi-asserted-by":"publisher","first-page":"551","DOI":"10.1007\/s10040-020-02218-7","volume":"29","author":"C Geng","year":"2021","unstructured":"Geng C, Xiaosi S, Liu Y, Shida Z (2021) Effect of riverbed sediment flushing and clogging on river-water infiltration rate: a case study in the Second Songhua River. Northeast China. Hydrogeol J 29(2):551\u2013565. https:\/\/doi.org\/10.1007\/s10040-020-02218-7","journal-title":"Northeast China. Hydrogeol J"},{"key":"37894_CR74","doi-asserted-by":"publisher","first-page":"23017","DOI":"10.1007\/s11356-020-12236-3","volume":"28","author":"D Ghezzi","year":"2021","unstructured":"Ghezzi D, Filippini M, Cappelletti M, Firrincieli A, Zannoni D, Gargini A, Fedi S (2021) Molecular characterization of microbial communities in a peat-rich aquifer system contaminated with chlorinated aliphatic compounds. Environ Sci Pollut Res 28:23017\u201323035. https:\/\/doi.org\/10.1007\/s11356-020-12236-3","journal-title":"Environ Sci Pollut Res"},{"issue":"2","key":"37894_CR75","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1111\/j.1745-6592.2010.01283.x","volume":"30","author":"CG Giddings","year":"2010","unstructured":"Giddings CG, Liu F, Gossett JM (2010) Microcosm assessment of Polaromonas sp. JS666 as a bioaugmentation agent for degradation of cis-1, 2-dichloroethene in aerobic, subsurface environments. Groundwater Monit Remediat 30(2):106\u2013113. https:\/\/doi.org\/10.1111\/j.1745-6592.2010.01283.x","journal-title":"Groundwater Monit Remediat"},{"key":"37894_CR76","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2021.117927","volume":"289","author":"M Gros","year":"2021","unstructured":"Gros M, Catal\u00e1n N, Mas-Pla J, \u010celi\u0107 M, Petrovi\u0107 M, Farr\u00e9 MJ (2021) Groundwater antibiotic pollution and its relationship with dissolved organic matter: identification and environmental implications. Environ Pollut 289:117927. https:\/\/doi.org\/10.1016\/j.envpol.2021.117927","journal-title":"Environ Pollut"},{"issue":"12","key":"37894_CR77","doi-asserted-by":"publisher","first-page":"1192","DOI":"10.1016\/s1470-2045(12)70485-0","volume":"13","author":"N Guha","year":"2012","unstructured":"Guha N, Loomis D, Grosse Y, Lauby-Secretan B, El Ghissassi F, Bouvard V, Benbrahim-Tallaa L, Baan R, Mattock H, Straif K (2012) International Agency for Research on Cancer Monograph Working Group carcinogenicity of trichloroethylene, tetrachloroethylene, some other chlorinated solvents, and their metabolites. Lancet Oncol 13(12):1192\u20131193. https:\/\/doi.org\/10.1016\/s1470-2045(12)70485-0","journal-title":"Lancet Oncol"},{"issue":"13","key":"37894_CR78","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1029\/2002GL014743","volume":"29","author":"R Haggerty","year":"2002","unstructured":"Haggerty R, Wondzell SM, Johnson MA (2002) Power-law residence time distribution in the hyporheic zone of a 2nd-order mountain stream. Geophys Res Lett 29(13):18\u20131. https:\/\/doi.org\/10.1029\/2002GL014743","journal-title":"Geophys Res Lett"},{"issue":"6","key":"37894_CR79","doi-asserted-by":"publisher","first-page":"1358","DOI":"10.1099\/ijs.0.013292-0","volume":"60","author":"MW Hahn","year":"2010","unstructured":"Hahn MW, Kasalick\u00fd V, Jezbera J, Brandt U, Jezberova J, \u0160imek K (2010) Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. Int J Syst Evol Microbiol 60(6):1358\u20131365. https:\/\/doi.org\/10.1099\/ijs.0.013292-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"2","key":"37894_CR80","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1007\/s10533-020-00674-7","volume":"149","author":"TB Hampton","year":"2020","unstructured":"Hampton TB, Zarnetske JP, Briggs MA, Dehkordy FM, Singha K, Day-Lewis FD, MahmoodPoor Dehkordy F, Harvey JW, Chowdhury SR, Lane JW (2020) Experimental shifts of hydrologic residence time in a sandy urban stream sediment\u2013water interface alter nitrate removal and nitrous oxide fluxes. Biogeochem 149(2):195\u2013219. https:\/\/doi.org\/10.1007\/s10533-020-00674-7","journal-title":"Biogeochem"},{"key":"37894_CR81","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1021\/es9805876","volume":"33","author":"ZC Haston","year":"1999","unstructured":"Haston ZC, Mccarty PL (1999) Chlorinated ethene half-velocity coefficients (KS) for reductive dehalogenation. Environ Sci Technol 33:223\u2013226. https:\/\/doi.org\/10.1021\/es9805876","journal-title":"Environ Sci Technol"},{"issue":"7","key":"37894_CR82","doi-asserted-by":"publisher","first-page":"1753","DOI":"10.1002\/etc.5620190708","volume":"19","author":"SI Hartwell","year":"2000","unstructured":"Hartwell SI, Alden RW, Wright DA, Ailstock S, Kerhin R (2000) Correlation of measures of ambient toxicity and fish community diversity in a Chesapeake Bay tributary, Maryland, USA: A biological, chemical, and geological assessment. Environ Toxicol Chem 19(7):1753\u20131763. https:\/\/doi.org\/10.1002\/etc.5620190708","journal-title":"Environ Toxicol Chem"},{"issue":"3","key":"37894_CR83","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1111\/gwmr.12111","volume":"35","author":"YT He","year":"2015","unstructured":"He YT, Wilson JT, Su C, Wilkin RT (2015) Review of abiotic degradation of chlorinated solvents by reactive iron minerals in aquifers. Groundw Monit Remediat 35(3):57\u201375. https:\/\/doi.org\/10.1111\/gwmr.12111","journal-title":"Groundw Monit Remediat"},{"key":"37894_CR84","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.142950","volume":"763","author":"J Hellal","year":"2021","unstructured":"Hellal J, Joulian C, Urien C, Ferreira S, Denonfoux J, Hermon L, Vuilleumier S, Imfeld G (2021) Chlorinated ethene biodegradation and associated bacterial taxa in multi-polluted groundwater: Insights from biomolecular markers and stable isotope analysis. Sci Total Environ 763:142950. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.142950","journal-title":"Sci Total Environ"},{"issue":"49","key":"37894_CR85","doi-asserted-by":"publisher","first-page":"107673","DOI":"10.1007\/s11356-023-29839-1","volume":"30","author":"S Hertle","year":"2023","unstructured":"Hertle S, De Boni N, Schell H, Tiehm A (2023) Electrochemical biostimulation of aerobic metabolic TCE degradation in a bioaugmentation approach. Environ Sci Pollut Res 30(49):107673\u2013107680. https:\/\/doi.org\/10.1007\/s11356-023-29839-1","journal-title":"Environ Sci Pollut Res"},{"issue":"2","key":"37894_CR86","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1016\/S0723-2020(84)80020-X","volume":"5","author":"RB Hespell","year":"1984","unstructured":"Hespell RB, Paster BJ, Macke TJ, Woese CR (1984) The origin and phylogeny of the bdellovibrios. Syst Appl Microbiol 5(2):196\u2013203. https:\/\/doi.org\/10.1016\/S0723-2020(84)80020-X","journal-title":"Syst Appl Microbiol"},{"key":"37894_CR87","doi-asserted-by":"publisher","DOI":"10.1016\/j.watres.2022.119056","volume":"224","author":"A H\u00f6hne","year":"2022","unstructured":"H\u00f6hne A, M\u00fcller BM, Schulz H, Dara R, Posselt M, Lewandowski J, McCallum JL (2022) Fate of trace organic compounds in the hyporheic zone: Influence of microbial metabolism. Water Res 224:119056. https:\/\/doi.org\/10.1016\/j.watres.2022.119056","journal-title":"Water Res"},{"key":"37894_CR88","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1007\/BF00871642","volume":"66","author":"C Holliger","year":"1994","unstructured":"Holliger C, Schumacher W (1994) Reductive dehalogenation as a respiratory process. Antonie Van Leeuwenhoek 66:239\u2013246. https:\/\/doi.org\/10.1007\/BF00871642","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"3","key":"37894_CR89","doi-asserted-by":"publisher","DOI":"10.1016\/j.jece.2023.109989","volume":"11","author":"C Hong","year":"2023","unstructured":"Hong C, Zhang J, Liu T, Teng W, Fu R, Qiu Y (2023) Simultaneous and long-term effective immobilization of lead, cadmium and arsenic in multi-contaminated soil by ferrihydrite-supported animal-derived biochar. J Environ Chem Eng 11(3):109989. https:\/\/doi.org\/10.1016\/j.jece.2023.109989","journal-title":"J Environ Chem Eng"},{"issue":"3","key":"37894_CR90","doi-asserted-by":"publisher","first-page":"1255","DOI":"10.1099\/ijs.0.63484-0","volume":"55","author":"MA Horn","year":"2005","unstructured":"Horn MA, Ihssen J, Matthies C, Schramm A, Acker G, Drake HL (2005) Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. Int J Syst Evol Microbiol 55(3):1255\u20131265. https:\/\/doi.org\/10.1099\/ijs.0.63484-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR91","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.envpol.2018.04.076","volume":"240","author":"CY Hsu","year":"2018","unstructured":"Hsu CY, Chiang HC, Shie RH, Ku CH, Lin TY, Chen MJ, Chen NT, Chen YC (2018) Ambient VOCs in residential areas near a large-scale petrochemical complex: Spatiotemporal variation, source apportionment and health risk. Environ Pollut 240:95\u2013104. https:\/\/doi.org\/10.1016\/j.envpol.2018.04.076","journal-title":"Environ Pollut"},{"issue":"1616","key":"37894_CR92","doi-asserted-by":"publisher","first-page":"20120322","DOI":"10.1098\/rstb.2012.0322","volume":"368","author":"LA Hug","year":"2013","unstructured":"Hug LA, Maphosa F, Leys D, L\u00f6ffler FE, Smidt H, Edwards EA, Adrian L (2013) Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases. Philos Trans R Soc Lond B Biol Sci 368(1616):20120322. https:\/\/doi.org\/10.1098\/rstb.2012.0322","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"issue":"3","key":"37894_CR93","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1897\/2004-007R.1","volume":"1","author":"MA Huijbregts","year":"2005","unstructured":"Huijbregts MA, Rombouts LJ, Ragas AM, van de Meent D (2005) Human-toxicological effect and damage factors of carcinogenic and noncarcinogenic chemicals for life cycle impact assessment. Integr Environ Assess Manag 1(3):181\u2013244. https:\/\/doi.org\/10.1897\/2004-007R.1","journal-title":"Integr Environ Assess Manag"},{"issue":"3","key":"37894_CR94","doi-asserted-by":"publisher","first-page":"822","DOI":"10.1099\/00207713-46-3-822","volume":"46","author":"RL Irgens","year":"1996","unstructured":"Irgens RL, Gosink JJ, Staley JT (1996) Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica. Int J Syst Evol Microbiol 46(3):822\u2013826. https:\/\/doi.org\/10.1099\/00207713-46-3-822","journal-title":"Int J Syst Evol Microbiol"},{"issue":"6","key":"37894_CR95","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1099\/ijs.0.023044-0","volume":"61","author":"T Itoh","year":"2011","unstructured":"Itoh T, Yamanoi K, Kudo T, Ohkuma M, Takashina T (2011) Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field. Int J Syst Evol Microbiol 61(6):1281\u20131285. https:\/\/doi.org\/10.1099\/ijs.0.023044-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"11","key":"37894_CR96","doi-asserted-by":"publisher","first-page":"3733","DOI":"10.1128\/AEM.00031-09","volume":"75","author":"LK Jennings","year":"2009","unstructured":"Jennings LK, Chartrand MM, Lacrampe-Couloume G, Lollar BS, Spain JC, Gossett JM (2009) Proteomic and transcriptomic analyses reveal genes upregulated by cis-dichloroethene in Polaromonas sp. strain JS666. Appl Environ Microbiol 75(11):3733\u20133744. https:\/\/doi.org\/10.1128\/AEM.00031-09","journal-title":"Appl Environ Microbiol"},{"issue":"2","key":"37894_CR97","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.005693","volume":"73","author":"H Jin","year":"2023","unstructured":"Jin H, Huo L, Yang Y, Lv Y, Wang J, Maillard J, Holliger C, L\u00f6ffler FE, Yan J (2023) Sulfurospirillum diekertiae sp. nov., a tetrachloroethene-respiring bacterium isolated from contaminated soil. Int J Syst Evol Microbiol 73(2):005693. https:\/\/doi.org\/10.1099\/ijsem.0.005693","journal-title":"Int J Syst Evol Microbiol"},{"issue":"79","key":"37894_CR98","doi-asserted-by":"publisher","first-page":"79","DOI":"10.3389\/fenvs.2018.00079","volume":"6","author":"R Jing","year":"2018","unstructured":"Jing R, Fusi S, Kjellerup BV (2018) Remediation of polychlorinated biphenyls (PCBs) in contaminated soils and sediment: state of knowledge and perspectives. Front Environ Sci 6(79):79. https:\/\/doi.org\/10.3389\/fenvs.2018.00079","journal-title":"Front Environ Sci"},{"key":"37894_CR99","doi-asserted-by":"publisher","first-page":"849","DOI":"10.3389\/fmicb.2019.00849","volume":"10","author":"BB J\u00f8rgensen","year":"2019","unstructured":"J\u00f8rgensen BB, Findlay AJ, Pellerin A (2019) The biogeochemical sulfur cycle of marine sediments. Front Microbiol 10:849. https:\/\/doi.org\/10.3389\/fmicb.2019.00849","journal-title":"Front Microbiol"},{"key":"37894_CR100","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s42452-021-04392-z","volume":"3","author":"V Joseph","year":"2021","unstructured":"Joseph V, Chellappan G, Aparajitha S, Ramya RN, Vrinda S, Rejish Kumar VJ, Bright Singh IS (2021) Molecular characterization of bacteria and archaea in a bioaugmented zero-water exchange shrimp pond. SN Appl Sci 3:1\u201320. https:\/\/doi.org\/10.1007\/s42452-021-04392-z","journal-title":"SN Appl Sci"},{"key":"37894_CR101","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.137758","volume":"721","author":"F Jroundi","year":"2020","unstructured":"Jroundi F, Descostes M, Povedano-Priego C, S\u00e1nchez-Castro I, Suvannagan V, Grizard P, Merroun ML (2020) Profiling native aquifer bacteria in a uranium roll-front deposit and their role in biogeochemical cycle dynamics: insights regarding in situ recovery mining. Sci Total Environ 721:137758. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.137758","journal-title":"Sci Total Environ"},{"key":"37894_CR102","doi-asserted-by":"publisher","first-page":"249","DOI":"10.3389\/fmicb.2016.00249","volume":"7","author":"BE Jugder","year":"2016","unstructured":"Jugder BE, Ertan H, Bohl S, Lee M, Marquis CP, Manefield M (2016) Organohalide respiring bacteria and reductive dehalogenases: key tools in organohalide bioremediation. Front Microbiol 7:249. https:\/\/doi.org\/10.3389\/fmicb.2016.00249","journal-title":"Front Microbiol"},{"key":"37894_CR103","doi-asserted-by":"publisher","unstructured":"Kale V, Bj\u00f6rnsd\u00f3ttir SH, Fri\u00f0j\u00f3nsson \u00d3H, P\u00e9tursd\u00f3ttir SK, Omarsdottir S, Hreggvi\u00f0sson GO (2013) Litorilinea aerophila gen. nov., sp. nov., an aerobic member of the class Caldilineae, phylum Chloroflexi, isolated from an intertidal hot spring. Int J Syst Evol Microbiol 63(Pt_3):1149\u20131154. https:\/\/doi.org\/10.1099\/ijs.0.044115-0","DOI":"10.1099\/ijs.0.044115-0"},{"issue":"12","key":"37894_CR104","doi-asserted-by":"publisher","first-page":"2710","DOI":"10.1099\/ijs.0.018952-0","volume":"60","author":"V Kasalick\u00fd","year":"2010","unstructured":"Kasalick\u00fd V, Jezbera J, \u0160imek K, Hahn MW (2010) Limnohabitans planktonicus sp nov and Limnohabitans parvus sp nov, planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans. Int J Syst Evol Microbiol 60(12):2710\u20132714. https:\/\/doi.org\/10.1099\/ijs.0.018952-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR105","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1007\/s00253-007-1176-5","volume":"77","author":"AA Khardenavis","year":"2007","unstructured":"Khardenavis AA, Kapley A, Purohit HJ (2007) Simultaneous nitrification and denitrification by diverse Diaphorobacter sp. Appl Microbiol Biotechnol 77:403\u2013409. https:\/\/doi.org\/10.1007\/s00253-007-1176-5","journal-title":"Appl Microbiol Biotechnol"},{"issue":"5","key":"37894_CR106","doi-asserted-by":"publisher","first-page":"1427","DOI":"10.1099\/ijs.0.02224-0","volume":"53","author":"KK Kim","year":"2003","unstructured":"Kim KK, Lee CS, Kroppenstedt RM, Stackebrandt E, Lee ST (2003) Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 53(5):1427\u20131433. https:\/\/doi.org\/10.1099\/ijs.0.02224-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR107","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1007\/BF02932083","volume":"11","author":"E-S Kim","year":"2006","unstructured":"Kim E-S, Nomura I, Hasegawa Y, Takamizawa K (2006) Characterization of a newlyisolatedcis-1, 2-dichloroethylene and aliphatic compound-degrading bacterium, Clostridium sp. strain KYT-1. Biotechnol Bioprocess Eng 11:553\u2013556. https:\/\/doi.org\/10.1007\/BF02932083","journal-title":"Biotechnol Bioprocess Eng"},{"issue":"2","key":"37894_CR108","doi-asserted-by":"publisher","first-page":"806","DOI":"10.1002\/2014WR015478","volume":"51","author":"J Koch","year":"2015","unstructured":"Koch J, Nowak W (2015) Predicting DNAPL mass discharge and contaminated site longevity probabilities: conceptual model and high-resolution stochastic simulation. Water Resour Res 51(2):806\u2013831. https:\/\/doi.org\/10.1002\/2014WR015478","journal-title":"Water Resour Res"},{"key":"37894_CR109","doi-asserted-by":"publisher","first-page":"517","DOI":"10.1016\/j.scitotenv.2013.02.082","volume":"454","author":"M Kotik","year":"2013","unstructured":"Kotik M, Davidov\u00e1 A, Vo\u0159\u00ed\u0161kov\u00e1 J, Baldrian P (2013) Bacterial communities in tetrachloroethene-polluted groundwaters: a case study. Sci Total Environ 454:517\u2013527. https:\/\/doi.org\/10.1016\/j.scitotenv.2013.02.082","journal-title":"Sci Total Environ"},{"issue":"4","key":"37894_CR110","doi-asserted-by":"publisher","first-page":"481","DOI":"10.1002\/eco.176","volume":"4","author":"S Krause","year":"2011","unstructured":"Krause S, Hannah DM, Fleckenstein JH, Heppell CM, Kaeser D, Pickup R, Pinay G, Robertson AL, Wood PJ (2011) Inter-disciplinary perspectives on processes in the hyporheic zone. Ecohydrology 4(4):481\u2013499. https:\/\/doi.org\/10.1002\/eco.176","journal-title":"Ecohydrology"},{"key":"37894_CR111","doi-asserted-by":"publisher","unstructured":"Kr\u00fcger M, Chaudhari N, Thamdrup B, Overholt WA, Bristow LA, Taubert M, K\u00fcsel K, Jehmlich N, von Bergen M, & Herrmann M (2023) Differential contribution of nitrifying prokaryotes to groundwater nitrification. The ISME J 1\u201311. https:\/\/doi.org\/10.1038\/s41396-023-01471-4","DOI":"10.1038\/s41396-023-01471-4"},{"issue":"2","key":"37894_CR112","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1099\/ijs.0.002378-0","volume":"59","author":"IS Kulichevskaya","year":"2009","unstructured":"Kulichevskaya IS, Baulina OI, Bodelier PL, Rijpstra WIC, Damste JSS, Dedysh SN (2009) Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog. Int J Syst Evol Microbiol 59(2):357\u2013364. https:\/\/doi.org\/10.1099\/ijs.0.002378-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"11","key":"37894_CR113","doi-asserted-by":"publisher","first-page":"2680","DOI":"10.1099\/ijs.0.65157-0","volume":"57","author":"IS Kulichevskaya","year":"2007","unstructured":"Kulichevskaya IS, Ivanova AO, Belova SE, Baulina OI, Bodelier PL, Rijpstra WIC, Sinninghe Damst\u00e9 JS, Zavarzin GA, Dedysh SN (2007) Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands. Int J Syst Evol Microbiol 57(11):2680\u20132687. https:\/\/doi.org\/10.1099\/ijs.0.65157-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"1","key":"37894_CR114","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1086\/678350","volume":"34","author":"ST Larned","year":"2015","unstructured":"Larned ST, Unwin MJ, Boustead NC (2015) Ecological dynamics in the riverine aquifers of a gaining and losing river. Freshw Sci 34(1):245\u2013262. https:\/\/doi.org\/10.1086\/678350","journal-title":"Freshw Sci"},{"key":"37894_CR115","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2021.146459","volume":"780","author":"DW Lee","year":"2021","unstructured":"Lee DW, Ahn Y, Pandi K, Park J, Yun ST, Jang M, Choi J (2021) Evaluation of natural attenuation-potential and biogeochemical analysis in nitrate contaminated bedrock aquifers by carbon source injection. Sci Total Environ 780:146459. https:\/\/doi.org\/10.1016\/j.scitotenv.2021.146459","journal-title":"Sci Total Environ"},{"issue":"1\u20132","key":"37894_CR116","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1016\/j.ecolmodel.2005.07.013","volume":"192","author":"MS Lee","year":"2006","unstructured":"Lee MS, Lee KK, Hyun Y, Clement TP, Hamilton D (2006) Nitrogen transformation and transport modeling in groundwater aquifers. Ecol Model 192(1\u20132):143\u2013159. https:\/\/doi.org\/10.1016\/j.ecolmodel.2005.07.013","journal-title":"Ecol Model"},{"issue":"5","key":"37894_CR117","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1002\/jcla.21783","volume":"29","author":"JH Lee","year":"2015","unstructured":"Lee JH, Lim CS, Lee MG, Kim HS (2015) Evaluation of a rapid immunochromatographic treponemal antibody test comparing the Treponema pallidum particle agglutination assay. J Clin Lab Anal 29(5):383\u2013386. https:\/\/doi.org\/10.1002\/jcla.21783","journal-title":"J Clin Lab Anal"},{"key":"37894_CR118","doi-asserted-by":"publisher","unstructured":"Lee J, Park B, Woo SG, Lee J, Park J (2014) Prosthecobacter algae sp. nov., isolated from activated sludge using algal metabolites. Int J Syst Evol Microbiol 64(Pt_2):663\u2013667. https:\/\/doi.org\/10.1099\/ijs.0.052787-0","DOI":"10.1099\/ijs.0.052787-0"},{"key":"37894_CR119","doi-asserted-by":"publisher","unstructured":"Levett PN, Morey RE, Galloway R, Steigerwalt AG, Ellis WA (2005) Reclassification of Leptospira parva Hovind-Hougen et al 1982 as Turneriella parva gen nov, comb nov. Int J Syst Evol Microbiol 55(4):1497\u20131499. https:\/\/doi.org\/10.1099\/ijs.0.63088-0","DOI":"10.1099\/ijs.0.63088-0"},{"key":"37894_CR120","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1016\/j.soilbio.2015.11.013","volume":"94","author":"X Li","year":"2016","unstructured":"Li X, Zhang W, Liu T, Chen L, Chen P, Li F (2016) Changes in the composition and diversity of microbial communities during anaerobic nitrate reduction and Fe (II) oxidation at circumneutral pH in paddy soil. Soil Biol Biochem 94:70\u201379. https:\/\/doi.org\/10.1016\/j.soilbio.2015.11.013","journal-title":"Soil Biol Biochem"},{"key":"37894_CR121","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2023.163026","volume":"879","author":"C Li","year":"2023","unstructured":"Li C, Xue C, Ouyang W, Liu M, Sun Y, Liu H (2023) Identification and synergetic mechanism of TCE, H2 and O2 metabolic microorganisms in the joint H2\/O2 system. Sci Total Environ 879:163026. https:\/\/doi.org\/10.1016\/j.scitotenv.2023.163026","journal-title":"Sci Total Environ"},{"issue":"108840","key":"37894_CR122","doi-asserted-by":"publisher","DOI":"10.1016\/j.envres.2019.108840","volume":"180","author":"B Liang","year":"2020","unstructured":"Liang B, Yun H, Kong D, Ding Y, Li X, Vangnai AS, Wang A (2020) Bioaugmentation of triclocarban and its dechlorinated congeners contaminated soil with functional degraders and the bacterial community response. Environ Res 180(108840):108840. https:\/\/doi.org\/10.1016\/j.envres.2019.108840","journal-title":"Environ Res"},{"issue":"8","key":"37894_CR123","doi-asserted-by":"publisher","first-page":"4245","DOI":"10.1021\/acs.est.8b06643","volume":"53","author":"C Lihl","year":"2019","unstructured":"Lihl C, Douglas LM, Franke S, P\u00b4erez-de-Mora A, Meyer AH, Daubmeier M, Edwards EA, Nijenhuis I, Sherwood Lollar B, Elsner M (2019) Mechanistic dichotomy in bacterial trichloroethene dechlorination revealed by carbon and chlorine isotope effects. Environ Sci Technol 53(8):4245\u20134254. https:\/\/doi.org\/10.1021\/acs.est.8b06643","journal-title":"Environ Sci Technol"},{"issue":"5","key":"37894_CR124","doi-asserted-by":"publisher","first-page":"1100","DOI":"10.1099\/ijs.0.65386-0","volume":"58","author":"QM Liu","year":"2008","unstructured":"Liu QM, Ten LN, Yu HS, Jin FX, Im WT, Lee ST (2008) Emticicia ginsengisoli sp. nov., a species of the family \u2018Flexibacteraceae\u2019isolated from soil of a ginseng field. Int J Syst Evol Microbiol 58(5):1100\u20131105. https:\/\/doi.org\/10.1099\/ijs.0.65386-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR125","doi-asserted-by":"publisher","unstructured":"Liu X, Wu Y, Wilson FP, Yu K, Lintner C, Cupples AM, Mattes TE (2018) Integrated methodological approach reveals microbial diversity and functions in aerobic groundwater microcosms adapted to vinyl chloride. FEMS Microbiol Ecol 94(9):fiy124. https:\/\/doi.org\/10.1093\/femsec\/fiy124","DOI":"10.1093\/femsec\/fiy124"},{"key":"37894_CR126","doi-asserted-by":"publisher","unstructured":"L\u00f6ffler FE, Ritalahti KM, Zinder SH (2013) Dehalococcoides and reductive dichlorination of chlorinated solvents. Bioaugmentation for groundwater remediation. Springer, New York, NY, pp 39\u201388. https:\/\/doi.org\/10.1007\/978-1-4614-4115-1_2","DOI":"10.1007\/978-1-4614-4115-1_2"},{"key":"37894_CR127","doi-asserted-by":"publisher","first-page":"7098","DOI":"10.1021\/es900835d","volume":"43","author":"ST Lohner","year":"2009","unstructured":"Lohner ST, Tiehm A (2009) Application of electrolysis to stimulate microbial reductive PCE dechlorination and oxidative VC biodegradation. Environ Sci Technol 43:7098\u20137104. https:\/\/doi.org\/10.1021\/es900835d","journal-title":"Environ Sci Technol"},{"key":"37894_CR128","doi-asserted-by":"publisher","first-page":"674","DOI":"10.3389\/fmicb.2018.00674","volume":"9","author":"KS Louren\u00e7o","year":"2018","unstructured":"Louren\u00e7o KS, Cassman NA, Pijl AS, Van Veen JA, Cantarella H, Kuramae EE (2018) Nitrosospira sp. govern nitrous oxide emissions in a tropical soil amended with residues of bioenergy crop. Front Microbiol 9:674. https:\/\/doi.org\/10.3389\/fmicb.2018.00674","journal-title":"Front Microbiol"},{"key":"37894_CR129","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1007\/BF00290916","volume":"159","author":"DR Lovley","year":"1993","unstructured":"Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJP, Gorby YA, Goodwin S (1993) Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Arch Microbiol 159:336\u2013344. https:\/\/doi.org\/10.1007\/BF00290916","journal-title":"Arch Microbiol"},{"key":"37894_CR130","doi-asserted-by":"publisher","first-page":"124449","DOI":"10.1016\/j.chemosphere.2019.124449","volume":"237","author":"SG Luo","year":"2019","unstructured":"Luo SG, Chen SC, Cao WZ, Lin WH, Sheu YT, Kao CM (2019) Application of \u03b3-PGA as the primary carbon source to bioremediate a TCE-polluted aquifer: a pilot-scale study. Chemosphere 237:124449. https:\/\/doi.org\/10.1016\/j.chemosphere.2019.124449","journal-title":"Chemosphere"},{"key":"37894_CR131","doi-asserted-by":"publisher","first-page":"112432","DOI":"10.1016\/j.ecoenv.2021.112432","volume":"221","author":"S Luo","year":"2021","unstructured":"Luo S, Zhen Z, Zhu X, Ren L, Wu W, Zhang W, Chen Y, Zhang D, Song Z, Lin Z, Liang YQ (2021) Accelerated atrazine degradation and altered metabolic pathways in goat manure assisted soil bioremediation. Ecotoxicol Environ Saf 221:112432. https:\/\/doi.org\/10.1016\/j.ecoenv.2021.112432","journal-title":"Ecotoxicol Environ Saf"},{"key":"37894_CR132","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1007\/BF02374138","volume":"62","author":"A Mariotti","year":"1981","unstructured":"Mariotti A, Germon JC, Hubert P, Kaiser P, Letolle R, Tardieux A, Tardieux P (1981) Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustration for the denitrification and nitrification processes. Plant Soil 62:413\u2013430. https:\/\/doi.org\/10.1007\/BF02374138","journal-title":"Plant Soil"},{"issue":"20","key":"37894_CR133","doi-asserted-by":"publisher","first-page":"6405","DOI":"10.1128\/AEM.00197-08","volume":"74","author":"TE Mattes","year":"2008","unstructured":"Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV (2008) The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon-and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Appl Environ Microbiol 74(20):6405\u20136416. https:\/\/doi.org\/10.1128\/AEM.00197-08","journal-title":"Appl Environ Microbiol"},{"issue":"4","key":"37894_CR134","doi-asserted-by":"publisher","first-page":"445","DOI":"10.1111\/j.1574-6976.2010.00210.x","volume":"34","author":"TE Mattes","year":"2010","unstructured":"Mattes TE, Alexander AK, Coleman NV (2010) Aerobic biodegradation of the chloroethenes: pathways, enzymes, ecology, and evolution. FEMS Microbiol Rev 34(4):445\u2013475. https:\/\/doi.org\/10.1111\/j.1574-6976.2010.00210.x","journal-title":"FEMS Microbiol Rev"},{"key":"37894_CR135","doi-asserted-by":"publisher","first-page":"1568","DOI":"10.1126\/science.276.5318.1568","volume":"276","author":"X Maym\u00f3-Gatell","year":"1997","unstructured":"Maym\u00f3-Gatell X, Chien Y-t, Gossett JM, Zinder SH (1997) Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Sci 276:1568\u20131571. https:\/\/doi.org\/10.1126\/science.276.5318.1568","journal-title":"Sci"},{"issue":"3","key":"37894_CR136","doi-asserted-by":"publisher","first-page":"516","DOI":"10.1021\/es001285i","volume":"35","author":"X Maym\u00f3-Gatell","year":"2001","unstructured":"Maym\u00f3-Gatell X, Nijenhuis I, Zinder SH (2001) Reductive dechlorination of cis-1, 2-dichloroethene and vinyl chloride by \u201cDehalococcoides ethenogenes.\u201d Environ Sci Technol 35(3):516\u2013521. https:\/\/doi.org\/10.1021\/es001285i","journal-title":"Environ Sci Technol"},{"issue":"12","key":"37894_CR137","doi-asserted-by":"publisher","first-page":"1200","DOI":"10.1021\/es00154a002","volume":"20","author":"PL McCarty","year":"1986","unstructured":"McCarty PL, Smith DP (1986) Anaerobic wastewater treatment. Environ Sci Technol 20(12):1200\u20131206","journal-title":"Environ Sci Technol"},{"issue":"1","key":"37894_CR138","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1002\/rem.20036","volume":"15","author":"TM McGuire","year":"2004","unstructured":"McGuire TM, Newell CJ, Looney BB, Vangelas KM, Sink CH (2004) Historical analysis of monitored natural attenuation: a survey of 191 chlorinated solvent sites and 45 solvent plumes. Remediat J 15(1):99\u2013112. https:\/\/doi.org\/10.1002\/rem.20036","journal-title":"Remediat J"},{"issue":"2","key":"37894_CR139","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1111\/j.1745-6584.2007.00385.x","volume":"46","author":"PB McMahon","year":"2008","unstructured":"McMahon PB, Chapelle FH (2008) Redox processes and water quality of selected principal aquifer systems. Ground Water 46(2):259\u2013271. https:\/\/doi.org\/10.1111\/j.1745-6584.2007.00385.x","journal-title":"Ground Water"},{"key":"37894_CR140","doi-asserted-by":"publisher","first-page":"319","DOI":"10.1016\/j.scitotenv.2012.04.011","volume":"427","author":"US McKnight","year":"2012","unstructured":"McKnight US, Rasmussen JJ, Kronvang B, Bjerg PL, Binning PJ (2012) Integrated assessment of the impact of chemical stressors on surface water ecosystems. Sci Total Environ 427:319\u2013331. https:\/\/doi.org\/10.1016\/j.scitotenv.2012.04.011","journal-title":"Sci Total Environ"},{"issue":"2","key":"37894_CR141","doi-asserted-by":"publisher","first-page":"465","DOI":"10.1099\/ijs.0.02316-0","volume":"53","author":"J Mergaert","year":"2003","unstructured":"Mergaert J, Lednicka D, Goris J, Cnockaert MC, De Vos P, Swings J (2003) Taxonomic study of Cellvibrio strains and description of Cellvibrio ostraviensis sp. nov., Cellvibrio fibrivorans sp. nov. and Cellvibrio gandavensis sp. nov. Int J Syst Evol Microbiol 53(2):465\u2013471. https:\/\/doi.org\/10.1099\/ijs.0.02316-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"3","key":"37894_CR142","doi-asserted-by":"publisher","first-page":"602","DOI":"10.1899\/04-021.1","volume":"24","author":"JL Meyer","year":"2005","unstructured":"Meyer JL, Paul MJ, Taulbee WK (2005) Stream ecosystem function in urbanizing landscapes. J N Am Benthol Soc 24(3):602\u2013612. https:\/\/doi.org\/10.1899\/04-021.1","journal-title":"J N Am Benthol Soc"},{"issue":"6","key":"37894_CR143","doi-asserted-by":"publisher","first-page":"501","DOI":"10.1080\/01490451.2012.732662","volume":"30","author":"LG Miller","year":"2013","unstructured":"Miller LG, Baesman SM, Kirshtein J, Voytek MA, Oremland RS (2013) A biogeochemical and genetic survey of acetylene fermentation by environmental samples and bacterial isolates. Geomicrobiol J 30(6):501\u2013516. https:\/\/doi.org\/10.1080\/01490451.2012.732662","journal-title":"Geomicrobiol J"},{"issue":"7","key":"37894_CR144","doi-asserted-by":"publisher","first-page":"1436","DOI":"10.3390\/w11071436","volume":"11","author":"BB Mojarrad","year":"2019","unstructured":"Mojarrad BB, Betterle A, Singh T, Olid C, W\u00f6rman A (2019) The effect of stream discharge on hyporheic exchange. Water 11(7):1436. https:\/\/doi.org\/10.3390\/w11071436","journal-title":"Water"},{"issue":"2","key":"37894_CR145","doi-asserted-by":"publisher","first-page":"569","DOI":"10.1099\/ijs.0.02400-0","volume":"53","author":"P Monciardini","year":"2003","unstructured":"Monciardini P, Cavaletti L, Schumann P, Rohde M, Donadio S (2003) Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53(2):569\u2013576. https:\/\/doi.org\/10.1099\/ijs.0.02400-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"1","key":"37894_CR146","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1021\/es061553y","volume":"41","author":"MJ Moran","year":"2007","unstructured":"Moran MJ, Zogorski JS, Squillace PJ (2007) Chlorinated solvents in groundwater of the United States. Environ Sci Technol 41(1):74\u201381. https:\/\/doi.org\/10.1021\/es061553y","journal-title":"Environ Sci Technol"},{"key":"37894_CR147","doi-asserted-by":"publisher","DOI":"10.1039\/9781849737265","author":"RD Morrison","year":"2015","unstructured":"Morrison RD, Murphy BL (2015) Chlorinated solvents: a forensic evaluation. Royal Society of Chemistry, Dorchester. https:\/\/doi.org\/10.1039\/9781849737265","journal-title":"Royal Society of Chemistry, Dorchester."},{"issue":"4","key":"37894_CR148","doi-asserted-by":"publisher","first-page":"613","DOI":"10.3390\/w14040613","volume":"14","author":"JG Morrissy","year":"2022","unstructured":"Morrissy JG, Currell MJ, Reichman SM, Surapaneni A, Megharaj M, Crosbie ND, Hirth D, Aquilina S, Rajendram W, Ball AS (2022) The variation in groundwater microbial communities in an unconfined aquifer contaminated by multiple nitrogen contamination sources. Water 14(4):613. https:\/\/doi.org\/10.3390\/w14040613","journal-title":"Water"},{"issue":"1","key":"37894_CR149","doi-asserted-by":"publisher","first-page":"4179","DOI":"10.1038\/s41598-021-83750-8","volume":"11","author":"BM Mueller","year":"2021","unstructured":"Mueller BM, Schulz H, Danczak RE, Putschew A, Lewandowski J (2021) Simultaneous attenuation of trace organics and change in organic matter composition in the hyporheic zone of urban streams. Sci Rep 11(1):4179. https:\/\/doi.org\/10.1038\/s41598-021-83750-8","journal-title":"Sci Rep"},{"issue":"3","key":"37894_CR150","doi-asserted-by":"publisher","first-page":"107818","DOI":"10.1016\/j.jece.2022.107818","volume":"10","author":"B Munoz-Palazon","year":"2022","unstructured":"Munoz-Palazon B, Mikola A, Rosa-Masegosa A, Vilchez-Vargas R, Link A, Gonzalez-Lopez J, Gonzalez-Martinez A (2022) Novel application of aerobic granular biofilm systems for treating nitrate-polluted groundwater at low temperature: microbial community and performance. J Environ Chem Eng 10(3):107818. https:\/\/doi.org\/10.1016\/j.jece.2022.107818","journal-title":"J Environ Chem Eng"},{"key":"37894_CR151","first-page":"113","volume-title":"Groundwater and soil cleanup","author":"National Research Council","year":"1999","unstructured":"National Research Council (1999) Improving management of persistent of contaminants. Groundwater and soil cleanup. National Academic Press, Washington, DC, pp 113\u2013174"},{"issue":"2","key":"37894_CR152","doi-asserted-by":"publisher","first-page":"322","DOI":"10.3390\/w12020322","volume":"12","author":"J N\u011bme\u010dek","year":"2020","unstructured":"N\u011bme\u010dek J, Markov\u00e1 K, \u0160p\u00e1nek R, Anto\u0161 V, Kozubek P, Lhotsk\u00fd O, \u010cern\u00edk M (2020) Hydrochemical conditions for aerobic\/anaerobic biodegradation of chlorinated ethenes\u2014a multi-site assessment. Water 12(2):322. https:\/\/doi.org\/10.3390\/w12020322","journal-title":"Water"},{"key":"37894_CR153","doi-asserted-by":"publisher","first-page":"743","DOI":"10.1016\/j.scitotenv.2017.12.047","volume":"622","author":"J N\u011bme\u010dek","year":"2018","unstructured":"N\u011bme\u010dek J, Steinov\u00e1 J, \u0160p\u00e1nek R, Pluha\u0159 T, Pokorn\u00fd P, Najmanov\u00e1 P, Knytl V, \u010cern\u00edk M (2018) Thermally enhanced in situ bioremediation of groundwater contaminated with chlorinated solvents\u2013a field test. Sci Total Environ 622:743\u2013755. https:\/\/doi.org\/10.1016\/j.scitotenv.2017.12.047","journal-title":"Sci Total Environ"},{"key":"37894_CR154","doi-asserted-by":"publisher","unstructured":"Nijenhuis I, Kuntze K (2016) Anaerobic microbial dehalogenation of organohalides\u2014state of the art and remediation strategies. Curr Opin Biotechnol 38:33\u201338. https:\/\/doi.org\/10.1016\/j.copbio.2015.11.009","DOI":"10.1016\/j.copbio.2015.11.009"},{"issue":"2\u20133","key":"37894_CR155","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1016\/0378-1097(96)00139-5","volume":"139","author":"JM Norton","year":"1996","unstructured":"Norton JM, Low JM, Klotz MG (1996) The gene encoding ammonia monooxygenase subunit A exists in three nearly identical copies in Nitrosospira sp. NpAV. FEMS Microbiol Lett 139(2\u20133):181\u2013188. https:\/\/doi.org\/10.1016\/0378-1097(96)00139-5","journal-title":"NpAV. FEMS Microbiol Lett"},{"key":"37894_CR156","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/j.jconhyd.2018.07.001","volume":"215","author":"K Nsir","year":"2018","unstructured":"Nsir K, Sch\u00e4fer G, di Chiara Roupert R, Mercury L (2018) Pore scale modelling of DNAPL migration in a water\u2013saturated porous medium. J Contam Hydrol 215:39\u201350. https:\/\/doi.org\/10.1016\/j.jconhyd.2018.07.001","journal-title":"J Contam Hydrol"},{"key":"37894_CR157","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1016\/j.marchem.2015.03.001","volume":"172","author":"AE O\u2019Connor","year":"2015","unstructured":"O\u2019Connor AE, Luek JL, McIntosh H, Beck AJ (2015) Geochemistry of redox-sensitive trace elements in a shallow subterranean estuary. Mar Chem 172:70\u201381. https:\/\/doi.org\/10.1016\/j.marchem.2015.03.001","journal-title":"Mar Chem"},{"issue":"5","key":"37894_CR158","doi-asserted-by":"publisher","first-page":"2189","DOI":"10.1099\/ijs.0.63736-0","volume":"55","author":"LA O\u2019Sullivan","year":"2005","unstructured":"O\u2019Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC (2005) Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum \u2018Bacteroidetes.\u2019 Int J Syst Evol Microbiol 55(5):2189\u20132194. https:\/\/doi.org\/10.1099\/ijs.0.63736-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR159","doi-asserted-by":"publisher","DOI":"10.1016\/j.watres.2020.116332","volume":"186","author":"CB Ottosen","year":"2020","unstructured":"Ottosen CB, R\u00f8nde V, McKnight US, Annable MD, Broholm MM, Devlin JF, Bjerg PL (2020) Natural attenuation of a chlorinated ethene plume discharging to a stream: integrated assessment of hydrogeological, chemical and microbial interactions. Water Res 186:116332. https:\/\/doi.org\/10.1016\/j.watres.2020.116332","journal-title":"Water Res"},{"issue":"6","key":"37894_CR160","doi-asserted-by":"publisher","first-page":"e02494","DOI":"10.1128\/AEM.02494-18","volume":"85","author":"B Paix","year":"2019","unstructured":"Paix B, Ezzedine JA, Jacquet S (2019) Diversity, dynamics, and distribution of Bdellovibrio and like organisms in perialpine lakes. Appl Environ Microbiol 85(6):e02494-18. https:\/\/doi.org\/10.1128\/AEM.02494-18","journal-title":"Appl Environ Microbiol"},{"key":"37894_CR161","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s12665-015-4888-3","volume":"75","author":"Y Pan","year":"2016","unstructured":"Pan Y, Yang J, Jia Y, Xu Z (2016) Experimental study on non-aqueous phase liquid multiphase flow characteristics and controlling factors in heterogeneous porous media. Environ Earth Sci 75:1\u201313. https:\/\/doi.org\/10.1007\/s12665-015-4888-3","journal-title":"Environ Earth Sci"},{"key":"37894_CR162","volume-title":"Dense chlorinated solvents and other DNAPLs in groundwater: history, behavior, and remediation","author":"JF Pankow","year":"1996","unstructured":"Pankow JF, Cherry JA (1996) Dense chlorinated solvents and other DNAPLs in groundwater: history, behavior, and remediation. Waterloo Press, Portland, Oregon"},{"key":"37894_CR163","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.jconhyd.2016.02.004","volume":"188","author":"BM Patterson","year":"2016","unstructured":"Patterson BM, Lee M, Bastow TP, Wilson JT, Donn MJ, Furness A, Goodwin B, Manefield M (2016) Concentration effects on biotic and abiotic processes in the removal of 1, 1, 2-trichloroethane and vinyl chloride using carbon-amended ZVI. J Contam Hydrol 188:1\u201311. https:\/\/doi.org\/10.1016\/j.jconhyd.2016.02.004","journal-title":"J Contam Hydrol"},{"issue":"7535","key":"37894_CR164","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1038\/nature13901","volume":"517","author":"KAP Payne","year":"2014","unstructured":"Payne KAP, Quezada CP, Fisher K, Dunstan MS, Collins FA, Sjuts H, Levy C, Hay S, Rigby SEJ, Leys D (2014) Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation. Nature 517(7535):513\u2013516. https:\/\/doi.org\/10.1038\/nature13901","journal-title":"Nature"},{"issue":"5","key":"37894_CR165","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1038\/s41561-021-00742-z","volume":"14","author":"S Peiffer","year":"2021","unstructured":"Peiffer S, Kappler A, Haderlein SB, Schmidt C, Byrne JM, Kleindienst S, Vogt C, Richnow HH, Obst M, Angenent LT, Bryce C, McCammon C, Planer-Friedrich B (2021) A biogeochemical\u2013hydrological framework for the role of redox-active compounds in aquatic systems. Nat Geosci 14(5):264\u2013272. https:\/\/doi.org\/10.1038\/s41561-021-00742-z","journal-title":"Nat Geosci"},{"issue":"3","key":"37894_CR166","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1038\/s41396-019-0573-y","volume":"14","author":"I Peng","year":"2020","unstructured":"Peng I, Goris T, Lu Y, Nijsse B, Burrichter A, Schleheck D, Koehorst JJ, Liu J, Sipkema D, Sinninghe Damste JS, Stams AJM, H\u00e4ggblom MM, Smidt H, Atashgahi S (2020) Organohalide-respiring Desulfoluna species isolated from marine environments. ISME J 14(3):815\u2013827. https:\/\/doi.org\/10.1038\/s41396-019-0573-y","journal-title":"ISME J"},{"key":"37894_CR167","unstructured":"Peterson DM, Miller D, Dander D, Kautsky M, Nofchissey J (2016) Groundwater remediation in a flood plain aquifer at Shiprock, New Mexico (Paper 16097). In: Proceedings of the waste management symposium 2016 (WM2016).\u00a0WM Symposia, Phoenix, AZ, USA, OSTI ID 22837990"},{"key":"37894_CR168","doi-asserted-by":"publisher","first-page":"6744","DOI":"10.1021\/es900623u","volume":"43","author":"HT Pham","year":"2009","unstructured":"Pham HT, Suto K, Inoue C (2009) Trichloroethylene transformation in aerobic pyrite suspension: pathways and kinetic modeling. Environ Sci Technol 43:6744\u20136749. https:\/\/doi.org\/10.1021\/es900623u","journal-title":"Environ Sci Technol"},{"key":"37894_CR169","doi-asserted-by":"publisher","unstructured":"Phillips E, Bergquist BA, Chartrand MM, Chen W, Edwards EA, Elsner M, Gilevska T, Hirschorn S, Horst A, Lacrampe-Couloume G, Mancini SA, McKelvie J, Morrill PL, Sullivan Ojeda A, Slater GF, Sleep BE, De Vera J, Warr O, Passeport E (2022) Compound specific isotope analysis in hydrogeology. J Hydrol 128588. https:\/\/doi.org\/10.1016\/j.jhydrol.2022.128588","DOI":"10.1016\/j.jhydrol.2022.128588"},{"key":"37894_CR170","doi-asserted-by":"publisher","first-page":"2512","DOI":"10.3389\/fmicb.2019.02512","volume":"10","author":"MC Piazzon","year":"2019","unstructured":"Piazzon MC, Naya-Catal\u00e0 F, Sim\u00f3-Mirabet P, Picard-S\u00e1nchez A, Roig FJ, Calduch-Giner JA, Sitj\u00e0Bobadilla A, P\u00e9rez-S\u00e1nchez J (2019) Sex, age, and bacteria: how the intestinal microbiota is modulated in a protandrous hermaphrodite fish. Front Microbiol 10:2512. https:\/\/doi.org\/10.3389\/fmicb.2019.02512","journal-title":"Front Microbiol"},{"key":"37894_CR171","doi-asserted-by":"publisher","DOI":"10.1016\/j.agwat.2022.107904","volume":"273","author":"M Pinardi","year":"2022","unstructured":"Pinardi M, Soana E, Severini E, Racchetti E, Celico F, Bartoli M (2022) Agricultural practices regulate the seasonality of groundwater-river nitrogen exchanges. Agric Water Manag 273:107904. https:\/\/doi.org\/10.1016\/j.agwat.2022.107904","journal-title":"Agric Water Manag"},{"key":"37894_CR172","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/j.jconhyd.2014.09.005","volume":"168","author":"D Puigserver","year":"2014","unstructured":"Puigserver D, Cort\u00e9s A, Viladevall M, Nogueras X, Parker BL, Carmona JM (2014) Processes controlling the fate of chloroethenes emanating from DNAPL aged sources in river\u2013aquifer contexts. J Contam Hydrol 168:25\u201340. https:\/\/doi.org\/10.1016\/j.jconhyd.2014.09.005","journal-title":"J Contam Hydrol"},{"key":"37894_CR173","doi-asserted-by":"publisher","first-page":"18724","DOI":"10.1007\/s11356-016-7068-4","volume":"23","author":"D Puigserver","year":"2016","unstructured":"Puigserver D, Herrero J, Torres M, Cort\u00e9s A, Nijenhuis I, Kuntze K, Parker BL, Carmona JM (2016) Reductive dechlorination in recalcitrant sources of chloroethenes in the transition zone between aquifers and aquitards. Environ Sci Pollut Res 23:18724\u201318741. https:\/\/doi.org\/10.1007\/s11356-016-7068-4","journal-title":"Environ Sci Pollut Res"},{"key":"37894_CR174","doi-asserted-by":"publisher","first-page":"156841","DOI":"10.1016\/j.scitotenv.2022.156841","volume":"843","author":"D Puigserver","year":"2022","unstructured":"Puigserver D, Herrero J, Carmona JM (2022) Nitrate removal by combining chemical and biostimulation approaches using micro-zero valent iron and lactic acid. Sci Total Environ 843:156841. https:\/\/doi.org\/10.1016\/j.scitotenv.2022.156841","journal-title":"Sci Total Environ"},{"key":"37894_CR175","doi-asserted-by":"publisher","first-page":"162751","DOI":"10.1016\/j.scitotenv.2023.162751","volume":"877","author":"D Puigserver","year":"2023","unstructured":"Puigserver D, Herrero J, Carmona JM (2023) Mobilization pilot test of PCE sources in the transition zone to aquitards by combining mZVI and biostimulation with lactic acid. Sci Total Environ 877:162751. https:\/\/doi.org\/10.1016\/j.scitotenv.2023.162751","journal-title":"Sci Total Environ"},{"key":"37894_CR176","doi-asserted-by":"publisher","first-page":"122111","DOI":"10.1016\/j.envpol.2023.122111","volume":"334","author":"L Qiu","year":"2023","unstructured":"Qiu L, Guo X, Liang Z, Lu Q, Wang S, Shim H (2023) Uncovering the metabolic pathway of novel Burkholderia sp. for efficient triclosan degradation and implication: insight from exogenous bioaugmentation and toxicity pressure. Environ Pollut 334:122111. https:\/\/doi.org\/10.1016\/j.envpol.2023.122111","journal-title":"Environ Pollut"},{"key":"37894_CR177","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/bs.ampbs.2019.02.007","volume":"74","author":"G Reguera","year":"2019","unstructured":"Reguera G, Kashefi K (2019) The electrifying physiology of Geobacter bacteria, 30 years on. Adv Microb Physiol 74:1\u201396. https:\/\/doi.org\/10.1016\/bs.ampbs.2019.02.007","journal-title":"Adv Microb Physiol"},{"key":"37894_CR178","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.jconhyd.2014.09.008","volume":"170","author":"MO Rivett","year":"2014","unstructured":"Rivett MO, Dearden RA, Wealthall GP (2014) Architecture, persistence and dissolution of a 20 to 45 year old trichloroethene DNAPL source zone. J Contam Hydrol 170:95\u2013115. https:\/\/doi.org\/10.1016\/j.jconhyd.2014.09.008","journal-title":"J Contam Hydrol"},{"key":"37894_CR179","doi-asserted-by":"publisher","unstructured":"Romani AM, Guasch H, & Balaguer MD (2016) Aquatic biofilms. Ecology, water quality and wastewater treatment Norfolk (UK): Caister Academic Press. USA. https:\/\/doi.org\/10.21775\/9781910190173","DOI":"10.21775\/9781910190173"},{"issue":"11","key":"37894_CR180","doi-asserted-by":"publisher","first-page":"1539","DOI":"10.1289\/ehp.10253","volume":"115","author":"BL Rowe","year":"2007","unstructured":"Rowe BL, Toccalino PL, Moran MJ, Zogorski JS, Price CV (2007) Occurrence and potential human-health relevance of volatile organic compounds in drinking water from domestic wells in the United States. Environ Health Perspect 115(11):1539\u20131546. https:\/\/doi.org\/10.1289\/ehp.10253","journal-title":"Environ Health Perspect"},{"issue":"2","key":"37894_CR181","doi-asserted-by":"publisher","first-page":"729","DOI":"10.1021\/es2034137","volume":"46","author":"JW Roy","year":"2012","unstructured":"Roy JW, Bickerton G (2012) Toxic groundwater contaminants: an overlooked contributor to urban stream syndrome? Environ Sci Technol 46(2):729\u2013736. https:\/\/doi.org\/10.1021\/es2034137","journal-title":"Environ Sci Technol"},{"issue":"4","key":"37894_CR182","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1111\/gwat.12392","volume":"54","author":"JW Roy","year":"2016","unstructured":"Roy JW, Bickerton G, Frank RA, Grapentine L, Hewitt LM (2016) Assessing risks of shallow riparian groundwater quality near an oil sands tailings pond. Groundwater 54(4):545\u2013559. https:\/\/doi.org\/10.1111\/gwat.12392","journal-title":"Groundwater"},{"issue":"2","key":"37894_CR183","doi-asserted-by":"publisher","first-page":"1042","DOI":"10.1099\/ijsem.0.003872","volume":"70","author":"D Ryu","year":"2020","unstructured":"Ryu D, Kim M, Han B, Lee KE, Lee BH, Lee EY, Jung GY, Kim SJ, Park SJ (2020) Ferrovibrio terrae sp. nov., isolated from soil. Int J Syst Evol Microbiol 70(2):1042\u20131047. https:\/\/doi.org\/10.1099\/ijsem.0.003872","journal-title":"Int J Syst Evol Microbiol"},{"issue":"5","key":"37894_CR184","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1099\/ijs.0.64086-0","volume":"56","author":"P Saha","year":"2006","unstructured":"Saha P, Chakrabarti T (2006) Emticicia oligotrophica gen. nov., sp. nov., a new member of the family \u2018Flexibacteraceae\u2019, phylum Bacteroidetes. Int J Syst Evol Microbiol 56(5):991\u2013995. https:\/\/doi.org\/10.1099\/ijs.0.64086-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR185","doi-asserted-by":"publisher","unstructured":"Sawyer AH, & Cardenas MB (2009) Hyporheic flow and residence time distributions in heterogeneous cross-bedded sediment W08406.\u00a0Water Resour Res 45(8). https:\/\/doi.org\/10.1029\/2008WR007632","DOI":"10.1029\/2008WR007632"},{"issue":"23","key":"37894_CR186","doi-asserted-by":"publisher","first-page":"13747","DOI":"10.1021\/acs.est.8b04108","volume":"52","author":"CE Schaefer","year":"2018","unstructured":"Schaefer CE, Ho P, Berns E, Werth C (2018) Mechanisms for abiotic dechlorination of trichloroethene by ferrous minerals under oxic and anoxic conditions in natural sediments. Environ Sci Technol 52(23):13747\u201313755. https:\/\/doi.org\/10.1021\/acs.est.8b04108","journal-title":"Environ Sci Technol"},{"issue":"13","key":"37894_CR187","doi-asserted-by":"publisher","first-page":"5134","DOI":"10.1021\/es1003044","volume":"44","author":"C Scheutz","year":"2010","unstructured":"Scheutz C, Broholm MM, Durant ND, Weeth EB, J\u00f8rgensen TH, Dennis P, Jacobsen CS, Cox EE, Chambon JC, Bjerg PL (2010) Field evaluation of biological enhanced reductive dechlorination of chloroethenes in clayey till. Environ Sci Technol 44(13):5134\u20135141. https:\/\/doi.org\/10.1021\/es1003044","journal-title":"Environ Sci Technol"},{"key":"37894_CR188","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1016\/j.watres.2014.04.008","volume":"59","author":"KR Schmidt","year":"2014","unstructured":"Schmidt KR, Gaza S, Voropaev A, Ertl S, Tiehm A (2014) Aerobic biodegradation of trichloroethene without auxiliary substrates. Water Res 59:112\u2013118. https:\/\/doi.org\/10.1016\/j.watres.2014.04.008","journal-title":"Water Res"},{"issue":"6","key":"37894_CR189","doi-asserted-by":"publisher","first-page":"863","DOI":"10.1093\/bioinformatics\/btr026","volume":"27","author":"R Schmieder","year":"2011","unstructured":"Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6):863\u2013864. https:\/\/doi.org\/10.1093\/bioinformatics\/btr026","journal-title":"Bioinformatics"},{"issue":"12","key":"37894_CR190","doi-asserted-by":"publisher","first-page":"2275","DOI":"10.1351\/pac200072122275","volume":"72","author":"KR Seddon","year":"2000","unstructured":"Seddon KR, Stark A, Torres MJ (2000) Influence of chloride, water, and organic solvents on the physical properties of ionic liquids. Pure Appl Chem 72(12):2275\u20132287. https:\/\/doi.org\/10.1351\/pac200072122275","journal-title":"Pure Appl Chem"},{"issue":"21","key":"37894_CR191","doi-asserted-by":"publisher","first-page":"6335","DOI":"10.1128\/AEM.02325-16","volume":"82","author":"R Sekar","year":"2016","unstructured":"Sekar R, Taillefert M, DiChristina TJ, L\u00f6ffler FE (2016) Simultaneous transformation of commingled trichloroethylene, tetrachloroethylene, and 1,4- dioxane by a microbially driven fenton reaction in batch liquid cultures. Appl Environ Microbiol 82(21):6335\u20136343. https:\/\/doi.org\/10.1128\/AEM.02325-16","journal-title":"Appl Environ Microbiol"},{"issue":"9","key":"37894_CR192","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.840","volume":"8","author":"R Severino","year":"2019","unstructured":"Severino R, Froufe HJ, Barroso C, Albuquerque L, Lobo-da-Cunha A, da Costa MS, Egas C (2019) High-quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep-branching lineages of the phylum Actinobacteria. Microbiolopen 8(9):e00840. https:\/\/doi.org\/10.1002\/mbo3.840","journal-title":"Microbiolopen"},{"issue":"1","key":"37894_CR193","doi-asserted-by":"publisher","first-page":"6834","DOI":"10.1038\/s41598-023-33600-6","volume":"13","author":"N Sharma","year":"2023","unstructured":"Sharma N, Whittaker AC, Watkins SE, Valero L, V\u00e9rit\u00e9 J, Puigdefabregas C, Adatte T, Garc\u00e9s M, Guillocheau M, Castelltort S (2023) Water discharge variations control fluvial stratigraphic architecture in the Middle Eocene Escanilla Formation. Spain. Sci Rep 13(1):6834. https:\/\/doi.org\/10.1038\/s41598-023-33600-6","journal-title":"Spain. Sci Rep"},{"issue":"2","key":"37894_CR194","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1111\/j.1462-2920.2005.00882.x","volume":"8","author":"LJ Shaw","year":"2006","unstructured":"Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI, Baggs EM (2006) Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol 8(2):214\u2013222. https:\/\/doi.org\/10.1111\/j.1462-2920.2005.00882.x","journal-title":"Environ Microbiol"},{"issue":"3","key":"37894_CR195","doi-asserted-by":"publisher","first-page":"408","DOI":"10.1002\/2211-5463.12405","volume":"9","author":"D Shehu","year":"2019","unstructured":"Shehu D, Alias Z (2019) Dechlorination of polychlorobiphenyl degradation metabolites by a recombinant glutathione S-transferase from Acidovorax sp. KKS102. FEBS Open Bio 9(3):408\u2013419. https:\/\/doi.org\/10.1002\/2211-5463.12405","journal-title":"FEBS Open Bio"},{"issue":"9","key":"37894_CR196","doi-asserted-by":"publisher","first-page":"4821","DOI":"10.1021\/acs.est.6b05554","volume":"51","author":"B \u015eim\u015fir","year":"2017","unstructured":"\u015eim\u015fir B, Yan J, Im J, Graves D, L\u00f6ffler FE (2017) Natural attenuation in streambed sediment receiving chlorinated solvents from underlying fracture networks. Environ Sci Technol 51(9):4821\u20134830. https:\/\/doi.org\/10.1021\/acs.est.6b05554","journal-title":"Environ Sci Technol"},{"key":"37894_CR197","doi-asserted-by":"publisher","first-page":"441","DOI":"10.1007\/s10653-020-00733-w","volume":"43","author":"E Soldatova","year":"2021","unstructured":"Soldatova E, Dong Y, Li J, Liu Y, Zan J, Boeckx P, Sun Z (2021) Nitrogen transformation and pathways in the shallow groundwater\u2013soil system within agricultural landscapes. Environ Geochem Health 43:441\u2013459. https:\/\/doi.org\/10.1007\/s10653-020-00733-w","journal-title":"Environ Geochem Health"},{"key":"37894_CR198","doi-asserted-by":"publisher","first-page":"1153","DOI":"10.1016\/j.scitotenv.2018.06.119","volume":"642","author":"AT Sonne","year":"2018","unstructured":"Sonne AT, Rasmussen JJ, H\u00f6ss S, Traunspurger W, Bjerg PL, McKnight US (2018) Linking ecological health to co-occurring organic and inorganic chemical stressors in a groundwater-fed stream system. Sci Total Environ 642:1153\u20131162. https:\/\/doi.org\/10.1016\/j.scitotenv.2018.06.119","journal-title":"Sci Total Environ"},{"key":"37894_CR199","doi-asserted-by":"publisher","unstructured":"Sorokin DY, Vejmelkova D, L\u00fccker S, Streshinskaya GM, Rijpstra WIC, Sinninghe Damst\u00e9 JS, Kleerbezem R, van Loosdrecht M, Muyzer G, Daims H (2014) Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. Int J Syst Evol Microbiol 64(Pt_6):1859\u20131865. https:\/\/doi.org\/10.1099\/ijs.0.062232-0","DOI":"10.1099\/ijs.0.062232-0"},{"issue":"1","key":"37894_CR200","doi-asserted-by":"publisher","first-page":"11237","DOI":"10.1038\/ncomms11237","volume":"7","author":"JC Stegen","year":"2016","unstructured":"Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M (2016) Groundwater\u2013surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover. Nat Commun 7(1):11237. https:\/\/doi.org\/10.1038\/ncomms11237","journal-title":"Nat Commun"},{"issue":"2","key":"37894_CR201","doi-asserted-by":"publisher","first-page":"609","DOI":"10.1021\/es034417r","volume":"38","author":"A Steinbach","year":"2004","unstructured":"Steinbach A, Seifert R, Annweiler E, Michaelis W (2004) Hydrogen and carbon isotope fractionation during anaerobic biodegradation of aromatic hydrocarbons a field study. Environ Sci Technol 38(2):609\u2013616. https:\/\/doi.org\/10.1021\/es034417r","journal-title":"Environ Sci Technol"},{"issue":"1","key":"37894_CR202","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1046\/j.1365-2427.1999.00377.x","volume":"41","author":"RG Storey","year":"1999","unstructured":"Storey RG, Fulthorpe RR, Williams DD (1999) Perspectives and predictions on the microbial ecology of the hyporheic zone. Freshw Biol 41(1):119\u2013130. https:\/\/doi.org\/10.1046\/j.1365-2427.1999.00377.x","journal-title":"Freshw Biol"},{"issue":"2","key":"37894_CR203","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1099\/ijs.0.63796-0","volume":"56","author":"Y Takahashi","year":"2006","unstructured":"Takahashi Y, Matsumoto A, Morisaki K, \u014cmura S (2006) Patulibacter minatonensis gen. nov., sp. nov., a novel actinobacterium isolated using an agar medium supplemented with superoxide dismutase, and proposal of Patulibacteraceae fam. nov. Int J Syst Evol Microbiol 56(2):401\u2013406. https:\/\/doi.org\/10.1099\/ijs.0.63796-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"7","key":"37894_CR204","doi-asserted-by":"publisher","first-page":"1561","DOI":"10.1099\/ijs.0.65787-0","volume":"58","author":"M Takeda","year":"2008","unstructured":"Takeda M, Yoneya A, Miyazaki Y, Kondo K, Makita H, Kondoh M, Suzuki I, Koizumi JI (2008) Prosthecobacter fluviatilis sp. nov., which lacks the bacterial tubulin btubA and btubB genes. Int J Syst Evol Microbiol 58(7):1561\u20131565. https:\/\/doi.org\/10.1099\/ijs.0.65787-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"4","key":"37894_CR205","doi-asserted-by":"publisher","first-page":"828","DOI":"10.1016\/j.soilbio.2005.08.001","volume":"38","author":"AE Taylor","year":"2006","unstructured":"Taylor AE, Bottomley PJ (2006) Nitrite production by Nitrosomonas europaea and Nitrosospira sp. AV in soils at different solution concentrations of ammonium. Soil Biol Biochem 38(4):828\u2013836. https:\/\/doi.org\/10.1016\/j.soilbio.2005.08.001","journal-title":"Soil Biol Biochem"},{"key":"37894_CR206","doi-asserted-by":"publisher","first-page":"6378","DOI":"10.1021\/es0701255","volume":"41","author":"AE Taylor","year":"2007","unstructured":"Taylor AE, Dolan ME, Bottomley PJ, Semprini L (2007) Utilization of fluoroethene as a surrogate for aerobic vinyl chloride transformation. Environ Sci Technol 41:6378\u20136383. https:\/\/doi.org\/10.1021\/es0701255","journal-title":"Environ Sci Technol"},{"issue":"8","key":"37894_CR207","doi-asserted-by":"publisher","first-page":"7316","DOI":"10.1002\/2016WR020197","volume":"53","author":"AJ Tesoriero","year":"2017","unstructured":"Tesoriero AJ, Gronberg JA, Juckem PF, Miller MP, Austin BP (2017) Predicting redox-sensitive contaminant concentrations in groundwater using random forest classification. Water Resour Res 53(8):7316\u20137331. https:\/\/doi.org\/10.1002\/2016WR020197","journal-title":"Water Resour Res"},{"key":"37894_CR208","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2021.15020","volume":"800","author":"AJ Tesoriero","year":"2021","unstructured":"Tesoriero AJ, Stratton LE, Miller MP (2021) Influence of redox gradients on nitrate transport from the landscape to groundwater and streams. Sci Total Environ 800:150200. https:\/\/doi.org\/10.1016\/j.scitotenv.2021.15020","journal-title":"Sci Total Environ"},{"key":"37894_CR209","doi-asserted-by":"publisher","first-page":"1994","DOI":"10.1007\/s11356-012-0764-9","volume":"19","author":"M Tobiszewski","year":"2012","unstructured":"Tobiszewski M, Namie\u015bnik J (2012) Abiotic degradation of chlorinated ethanes and ethenes in water. Environ Sci Pollut Res 19:1994\u20132006. https:\/\/doi.org\/10.1007\/s11356-012-0764-9","journal-title":"Environ Sci Pollut Res"},{"key":"37894_CR210","doi-asserted-by":"publisher","unstructured":"Toumi M, Abbaszade G, Sbaoui Y, Farkas R, \u00c1cs \u00c9, Jurecska L, T\u00f3th E (2021) Cultivation and molecular studies to reveal the microbial communities of groundwaters discharge located in Hungary. Water 13(11):1533. https:\/\/doi.org\/10.3390\/w13111533","DOI":"10.3390\/w13111533"},{"key":"37894_CR211","doi-asserted-by":"publisher","first-page":"1073","DOI":"10.1023\/A:1005438930870","volume":"20","author":"T Vallaeys","year":"1998","unstructured":"Vallaeys T, Albino L, Soulas G, Wright AD, Weightman AJ (1998) Isolation and characterization of a stable 2, 4-dichlorophenoxyacetic acid degrading bacterium, Variovorax paradoxus, using chemostat culture. Biotechnol Lett 20:1073\u20131076. https:\/\/doi.org\/10.1023\/A:1005438930870","journal-title":"Biotechnol Lett"},{"key":"37894_CR212","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1016\/j.scitotenv.2018.01.310","volume":"628","author":"M Vogel","year":"2018","unstructured":"Vogel M, Nijenhuis I, Lloyd J, Boothman C, P\u00f6ritz M, Mackenzie K (2018) Combined chemical and microbiological degradation of tetrachloroethene during the application of Carbo-Iron at a contaminated field site. Sci Total Environ 628:1027\u20131036. https:\/\/doi.org\/10.1016\/j.scitotenv.2018.01.310","journal-title":"Sci Total Environ"},{"issue":"5","key":"37894_CR213","doi-asserted-by":"publisher","first-page":"1080","DOI":"10.1128\/aem.49.5.1080-1083.1985","volume":"49","author":"TM Vogel","year":"1985","unstructured":"Vogel TM, McCarty PL (1985) Biotransformation of tetrachloroethylene to trichloroethylene, dichloroethylene, vinyl chloride, and carbon dioxide under methanogenic conditions. Appl Environ Microbiol 49(5):1080\u20131083. https:\/\/doi.org\/10.1128\/aem.49.5.1080-1083.1985","journal-title":"Appl Environ Microbiol"},{"key":"37894_CR214","doi-asserted-by":"publisher","DOI":"10.3791\/60155","volume":"150","author":"AO Wagner","year":"2019","unstructured":"Wagner AO, Markt R, Mutschlechner M, Lackner N, Prem EM, Praeg N, Illmer P (2019) Medium preparation for the cultivation of microorganisms under strictly anaerobic\/anoxic conditions. JoVE (Journal of Visualized Experiments) 150:e60155. https:\/\/doi.org\/10.3791\/60155","journal-title":"JoVE (Journal of Visualized Experiments)"},{"key":"37894_CR215","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.140455","volume":"746","author":"P Wang","year":"2020","unstructured":"Wang P, Zhang Y, Jin J, Wang T, Wang J, Jiang B (2020) A high-efficiency phenanthrene-degrading Diaphorobacter sp. isolated from PAH-contaminated river sediment. Sci Total Environ 746:140455. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.140455","journal-title":"Sci Total Environ"},{"issue":"1","key":"37894_CR216","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1111\/j.1574-6941.2008.00606.x","volume":"67","author":"K Watanabe","year":"2009","unstructured":"Watanabe K, Komatsu N, Ishii Y, Negishi M (2009) Effective isolation of bacterioplankton genus Polynucleobacter from freshwater environments grown on photochemically degraded dissolved organic matter. FEMS Microbiol Ecol 67(1):57\u201368. https:\/\/doi.org\/10.1111\/j.1574-6941.2008.00606.x","journal-title":"FEMS Microbiol Ecol"},{"key":"37894_CR217","doi-asserted-by":"publisher","first-page":"362","DOI":"10.1016\/j.watres.2017.10.059","volume":"128","author":"JJ Weatherill","year":"2018","unstructured":"Weatherill JJ, Atashgahi S, Schneidewind U, Krause S, Ullah S, Cassidy N, Rivett MO (2018) Natural attenuation of chlorinated ethenes in hyporheic zones: a review of key biogeochemical processes and in-situ transformation potential. Water Res 128:362\u2013382. https:\/\/doi.org\/10.1016\/j.watres.2017.10.059","journal-title":"Water Res"},{"key":"37894_CR218","doi-asserted-by":"publisher","first-page":"222","DOI":"10.1016\/j.watres.2019.05.083","volume":"161","author":"JJ Weatherill","year":"2019","unstructured":"Weatherill JJ, Krause S, Ullah S, Cassidy NJ, Levy A, Drijfhout FP, Rivett MO (2019) Revealing chlorinated ethene transformation hotspots in a nitrate-impacted hyporheic zone. Water Res 161:222\u2013231. https:\/\/doi.org\/10.1016\/j.watres.2019.05.083","journal-title":"Water Res"},{"key":"37894_CR219","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1016\/j.jconhyd.2013.12.001","volume":"158","author":"J Weatherill","year":"2014","unstructured":"Weatherill J, Krause S, Voyce K, Drijfhout F, Levy A, Cassidy N (2014) Nested monitoring approaches to delineate groundwater trichloroethene discharge to a UK lowland stream at multiple spatial scales. J Contam Hydrol 158:38\u201354. https:\/\/doi.org\/10.1016\/j.jconhyd.2013.12.001","journal-title":"J Contam Hydrol"},{"key":"37894_CR220","doi-asserted-by":"publisher","unstructured":"Wehncke EV, & Mariano NA (2021) Groundwater and its role in maintaining the ecological functions of ecosystems\u2014a review. Intensified Land and Water Use 55\u201386. https:\/\/doi.org\/10.1007\/978-3-030-65443-6_4","DOI":"10.1007\/978-3-030-65443-6_4"},{"issue":"17","key":"37894_CR221","doi-asserted-by":"publisher","first-page":"7422","DOI":"10.1021\/es201501a","volume":"45","author":"N Wei","year":"2011","unstructured":"Wei N, Finneran KT (2011) Influence of ferric iron on complete dechlorination of trichloroethylene (TCE) to ethene: Fe (III) reduction does not always inhibit complete dechlorination. Environ Sci Technol 45(17):7422\u20137430. https:\/\/doi.org\/10.1021\/es201501a","journal-title":"Environ Sci Technol"},{"key":"37894_CR222","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1016\/j.apgeochem.2012.10.003","volume":"28","author":"RA Whittleston","year":"2013","unstructured":"Whittleston RA, Stewart DI, Mortimer RJ, Burke IT (2013) Enhancing microbial iron reduction in hyperalkaline, chromium contaminated sediments by pH amendment. Appl Geochem 28:135\u2013144. https:\/\/doi.org\/10.1016\/j.apgeochem.2012.10.003","journal-title":"Appl Geochem"},{"issue":"12","key":"37894_CR223","doi-asserted-by":"publisher","first-page":"3025","DOI":"10.1038\/s41396-018-0257-z","volume":"12","author":"RC Wilhelm","year":"2018","unstructured":"Wilhelm RC (2018) Following the terrestrial tracks of Caulobacter-redefining the ecology of a reputed aquatic oligotroph. ISME J 12(12):3025\u20133037. https:\/\/doi.org\/10.1038\/s41396-018-0257-z","journal-title":"ISME J"},{"issue":"1","key":"37894_CR224","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1099\/00207713-42-1-107","volume":"42","author":"A Willems","year":"1992","unstructured":"Willems A, Goor M, Thielemans S, Gillis M, Kersters K, De Ley J (1992) Transfer of several phytopathogenic Pseudomonas species to Acidovorax as Acidovorax avenae subsp avenae subsp. nov., comb nov., Acidovorax avenae subsp citrulli, Acidovorax avenae subsp cattleyae, and Acidovorax konjaci. Int J Syst Evol Microbiol 42(1):107\u2013119. https:\/\/doi.org\/10.1099\/00207713-42-1-107","journal-title":"Int J Syst Evol Microbiol"},{"key":"37894_CR225","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-018-0592-3","volume":"6","author":"JR Willis","year":"2018","unstructured":"Willis JR, Gonz\u00e1lez-Torres P, Pittis AA, Bejarano LA, Cozzuto L, Andreu-Somavilla N, Alloza-Trabado M, Valent\u00edn A, Ksiezopolska E, Company C, Onywera H, Montfort M, Hermoso A, Iraola-Guzm\u00e1n S, Saus E, Labeeuw A, Carolis C, Hecht J, Ponomarenko J, Gabald\u00f3n T (2018) Citizen science charts two major \u201cstomatotypes\u201d in the oral microbiome of adolescents and reveals links with habits and drinking water composition. Microbiome 6:1\u201317. https:\/\/doi.org\/10.1186\/s40168-018-0592-3","journal-title":"Microbiome"},{"key":"37894_CR226","doi-asserted-by":"publisher","first-page":"19062","DOI":"10.1007\/s11356-016-7099-x","volume":"23","author":"FP Wilson","year":"2016","unstructured":"Wilson FP, Liu X, Mattes TE, Cupples AM (2016) Nocardioides, Sediminibacterium, Aquabacterium, Variovorax, and Pseudomonas linked to carbon uptake during aerobic vinyl chloride biodegradation. Environ Sci Pollut Res 23:19062\u201319070. https:\/\/doi.org\/10.1007\/s11356-016-7099-x","journal-title":"Environ Sci Pollut Res"},{"key":"37894_CR227","doi-asserted-by":"publisher","first-page":"5676","DOI":"10.1007\/s11356-015-5806-7","volume":"23","author":"Z Wittlingerov\u00e1","year":"2016","unstructured":"Wittlingerov\u00e1 Z, Mach\u00e1\u010dkov\u00e1 J, Petru\u017eelkov\u00e1 A, Zimov\u00e1 M (2016) Occurrence of perchloroethylene in surface water and fish in a river ecosystem affected by groundwater contamination. Environ Sci Pollut Res 23:5676\u20135692. https:\/\/doi.org\/10.1007\/s11356-015-5806-7","journal-title":"Environ Sci Pollut Res"},{"issue":"3","key":"37894_CR228","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1111\/j.1745-6584.2000.tb00228.x","volume":"38","author":"WW Woessner","year":"2000","unstructured":"Woessner WW (2000) Stream and fluvial plain ground water interactions: rescaling hydrogeologic thought. Groundwater 38(3):423\u2013429. https:\/\/doi.org\/10.1111\/j.1745-6584.2000.tb00228.x","journal-title":"Groundwater"},{"key":"37894_CR229","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000712","author":"YT Wu","year":"2021","unstructured":"Wu YT, Chiang PW, Tandon K, Rogozin DY, Degermendzhy AG, Tang SL (2021) Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia. Microb Genom. https:\/\/doi.org\/10.1099\/mgen.0.000712","journal-title":"Microb Genom"},{"key":"37894_CR230","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1016\/j.jhydrol.2017.08.005","volume":"553","author":"M Wu","year":"2017","unstructured":"Wu M, Wu J, Wu J (2017) Simulation of DNAPAPL migration in heterogeneous translucent porous media based on estimation of representative elementary volume. J Hydrol 553:276\u2013288. https:\/\/doi.org\/10.1016\/j.jhydrol.2017.08.005","journal-title":"J Hydrol"},{"key":"37894_CR231","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1016\/j.biortech.2016.01.090","volume":"207","author":"B Xie","year":"2016","unstructured":"Xie B, Liu B, Yi Y, Yang L, Liang D, Zhu Y, Liu H (2016) Microbiological mechanism of the improved nitrogen and phosphorus removal by embedding microbial fuel cell in anaerobic\u2013anoxic\u2013oxic wastewater treatment process. Bioresource Technol 207:109\u2013117. https:\/\/doi.org\/10.1016\/j.biortech.2016.01.090","journal-title":"Bioresource Technol"},{"key":"37894_CR232","doi-asserted-by":"publisher","first-page":"133876","DOI":"10.1016\/j.scitotenv.2019.133876","volume":"695","author":"H Xu","year":"2019","unstructured":"Xu H, Chang J, Wang H, Liu Y, Zhang X, Liang P, Huang X (2019) Enhancing direct interspecies electron transfer in syntrophic-methanogenic associations with (semi) conductive iron oxides: effects and mechanisms. Sci Total Environ 695:133876. https:\/\/doi.org\/10.1016\/j.scitotenv.2019.133876","journal-title":"Sci Total Environ"},{"issue":"127918","key":"37894_CR233","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2021.127918","volume":"427","author":"L Xu","year":"2022","unstructured":"Xu L, Su J, Ali A, Chang Q, Shi J, Yang Y (2022) Denitrification performance of nitrate\u2013dependent ferrous (Fe2+) oxidizing Aquabacterium sp. XL4: adsorption mechanisms of bio\u2013precipitation of phenol and estradiol. J Hazard Mater 427(127918):127918. https:\/\/doi.org\/10.1016\/j.jhazmat.2021.127918","journal-title":"J Hazard Mater"},{"key":"37894_CR234","doi-asserted-by":"publisher","first-page":"130460","DOI":"10.1016\/j.chemosphere.2021.130460","volume":"278","author":"X Xue","year":"2021","unstructured":"Xue X, Wang D, Yi X, Li Y, Han H (2021) Simultaneously autotrophic denitrification and organics degradation in low-strength coal gasification wastewater (LSCGW) treatment via microelectrolysis-triggered Fe (II)\/Fe (III) cycle. Chemosphere 278:130460. https:\/\/doi.org\/10.1016\/j.chemosphere.2021.130460","journal-title":"Chemosphere"},{"issue":"8","key":"37894_CR235","doi-asserted-by":"publisher","first-page":"1237","DOI":"10.3390\/w14081237","volume":"14","author":"A Yan","year":"2022","unstructured":"Yan A, Guo X, Hu D, Chen X (2022) Reactive transport of NH4+ in the hyporheic zone from the ground water to the surface water. Water 14(8):1237. https:\/\/doi.org\/10.3390\/w14081237","journal-title":"Water"},{"key":"37894_CR236","doi-asserted-by":"publisher","first-page":"124738","DOI":"10.1016\/j.biortech.2021.124738","volume":"326","author":"N Yan","year":"2021","unstructured":"Yan N, An M, Chu J, Cao L, Zhu G, Wu W, Wang W, Zhang Y, Rittmann BE (2021) More rapid dechlorination of 2, 4-dichlorophenol using acclimated bacteria. Bioresour Technol 326:124738. https:\/\/doi.org\/10.1016\/j.biortech.2021.124738","journal-title":"Bioresour Technol"},{"key":"37894_CR237","doi-asserted-by":"publisher","unstructured":"Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A (2008) Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum \u2018Verrucomicrobia\u2019, and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 58(4):998\u20131007. https:\/\/doi.org\/10.1099\/ijs.0.65520-0","DOI":"10.1099\/ijs.0.65520-0"},{"issue":"12","key":"37894_CR238","doi-asserted-by":"publisher","first-page":"4892","DOI":"10.1021\/acs.est.3c00122","volume":"57","author":"X You","year":"2023","unstructured":"You X, Liu S, Berns-Herrboldt EC, Dai C, Werth CJ (2023) Kinetics of hydroxyl radical production from oxygenation of reduced iron minerals and their reactivity with trichloroethene: effects of iron amounts, iron species, and sulfate reducing bacteria. Environ Sci Technol 57(12):4892\u20134904. https:\/\/doi.org\/10.1021\/acs.est.3c00122","journal-title":"Environ Sci Technol"},{"issue":"1","key":"37894_CR239","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1128\/genomeA.01416-17","volume":"6","author":"JM Young","year":"2018","unstructured":"Young JM, Skvortsov T, Arkhipova K, Allen CC (2018) Draft genome sequence of the predatory marine bacterium Halobacteriovorax sp strain JY17. Genome Announc 6(1):10\u20131128. https:\/\/doi.org\/10.1128\/genomeA.01416-17","journal-title":"Genome Announc"},{"key":"37894_CR240","doi-asserted-by":"publisher","first-page":"919","DOI":"10.1016\/j.chemosphere.2017.07.156","volume":"186","author":"M Zalesak","year":"2017","unstructured":"Zalesak M, Ruzicka J, Vicha R, Dvorackova M (2017) Cometabolic degradation of dichloroethenes by Comamonas testosteroni RF2. Chemosphere 186:919\u2013927. https:\/\/doi.org\/10.1016\/j.chemosphere.2017.07.156","journal-title":"Chemosphere"},{"key":"37894_CR241","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1016\/j.watres.2019.04.058","volume":"159","author":"C Zanotti","year":"2019","unstructured":"Zanotti C, Rotiroti M, Fumagalli L, Stefania GA, Canonaco F, Stefenelli G, Pr\u00e9v\u00f4t ASH, Leoni B, Bonomi T (2019) Groundwater and surface water quality characterization through positive matrix factorization combined with GIS approach. Water Res 159:122\u2013134. https:\/\/doi.org\/10.1016\/j.watres.2019.04.058","journal-title":"Water Res"},{"key":"37894_CR242","doi-asserted-by":"publisher","DOI":"10.1128\/jb.01481-12","author":"Y Zeng","year":"2012","unstructured":"Zeng Y, Kasalick\u00fd V, \u0160imek K, Kobl\u00ed\u017eek M (2012) Genome sequences of two freshwater betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and ammonia oxidizers. J Bacteriol. https:\/\/doi.org\/10.1128\/jb.01481-12","journal-title":"J Bacteriol"},{"key":"37894_CR243","doi-asserted-by":"publisher","unstructured":"Zeng Y, Selyanin V, Luke\u0161 M, Dean J, Kaftan D, Feng F, Kobl\u00ed\u017eek M (2015) Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca. Int J Syst Evol Microbiol 65(Pt_8):2410\u20132419. https:\/\/doi.org\/10.1099\/ijs.0.000272","DOI":"10.1099\/ijs.0.000272"},{"key":"37894_CR244","doi-asserted-by":"publisher","first-page":"373","DOI":"10.3303\/CET2186063","volume":"86","author":"M Zeppilli","year":"2021","unstructured":"Zeppilli M, Dell\u2019Armi E, Papini MP, Majone M (2021) Sequential reductive\/oxidative bioelectrochemical process for groundwater perchloroethylene removal. Chem Eng Trans 86:373\u2013378. https:\/\/doi.org\/10.3303\/CET2186063","journal-title":"Chem Eng Trans"},{"key":"37894_CR245","doi-asserted-by":"publisher","unstructured":"Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K (2003) Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol 53(4):1155\u20131163. https:\/\/doi.org\/10.1099\/ijs.0.02520-0","DOI":"10.1099\/ijs.0.02520-0"},{"issue":"8","key":"37894_CR246","doi-asserted-by":"publisher","first-page":"1703","DOI":"10.1007\/s10040-015-1314-6","volume":"23","author":"F Zheng","year":"2015","unstructured":"Zheng F, Gao Y, Sun Y, Shi X, Xu H, Wu J (2015) Influence of flow velocity and spatial heterogeneity on DNAPL migration in porous media: insights from laboratory experiments and numerical modelling. Hydrogeol J 23(8):1703. https:\/\/doi.org\/10.1007\/s10040-015-1314-6","journal-title":"Hydrogeol J"},{"key":"37894_CR247","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhydrol.2020.124622","volume":"583","author":"A Zhu","year":"2020","unstructured":"Zhu A, Yang Z, Liang Z, Gao L, Li R, Hou L, Li S, Xie Z, Wu Y, Chen J, Cao L (2020) Integrating hydrochemical and biological approaches to investigate the surface water and groundwater interactions in the hyporheic zone of the Liuxi River basin, southern China. J Hydrol 583:124622. https:\/\/doi.org\/10.1016\/j.jhydrol.2020.124622","journal-title":"J Hydrol"},{"key":"37894_CR248","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhydrol.2022.127777","volume":"609","author":"R Zuo","year":"2022","unstructured":"Zuo R, Xue Z, Wang J, Meng L, Zhao X, Pan M, Cai W (2022) Spatiotemporal variations of redox conditions and microbial responses in a typical river bank filtration system with high Fe2+ and Mn2+ contents. J Hydrol 609:127777. https:\/\/doi.org\/10.1016\/j.jhydrol.2022.127777","journal-title":"J Hydrol"}],"container-title":["Environmental Science and Pollution Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-026-37894-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11356-026-37894-7","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11356-026-37894-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,9]],"date-time":"2026-07-09T03:35:14Z","timestamp":1783568114000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11356-026-37894-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,6,20]]},"references-count":248,"journal-issue":{"issue":"20","published-online":{"date-parts":[[2026,5]]}},"alternative-id":["37894"],"URL":"https:\/\/doi.org\/10.1007\/s11356-026-37894-7","relation":{"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-6129015\/v1","asserted-by":"object"}]},"ISSN":["1614-7499"],"issn-type":[{"value":"1614-7499","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,6,20]]},"assertion":[{"value":"12 March 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 May 2026","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"26 May 2026","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 June 2026","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This is not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}},{"value":"This is not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to publish"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Not applicable.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Clinical trial number"}},{"value":"This is not applicable.","order":6,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}}]}}