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Several<jats:italic>Cryptosporidium<\/jats:italic>genotypes have been described in bats worldwide, suggesting that bats are infected by host-specific<jats:italic>Cryptosporidium<\/jats:italic>spp. To date, there are no published reports about<jats:italic>Cryptosporidium<\/jats:italic>spp. in bats from Colombia. Therefore, this study aimed to determine the presence and molecular diversity of<jats:italic>Cryptosporidium<\/jats:italic>spp. in Colombian bats.<\/jats:p><\/jats:sec><jats:sec><jats:title>Methods<\/jats:title><jats:p>A total of 63 gut samples from three bat species served for molecular detection of<jats:italic>Cryptosporidium<\/jats:italic>spp. 18S rDNA gene by qPCR. The sequenced amplicons were used in subsequent phylogenetic analyses to identify them as species or genotypes.<\/jats:p><\/jats:sec><jats:sec><jats:title>Results<\/jats:title><jats:p><jats:italic>Cryptosporidium<\/jats:italic>spp. qPCR detection occurred in 9.5% (6\/63) of bat intestines, and four sequences represented two new genotypes, called<jats:italic>Cryptosporidium<\/jats:italic>bat genotypes XIX and XX, were identified.<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusions<\/jats:title><jats:p>This study describes the detection of two novel<jats:italic>Cryptosporidium<\/jats:italic>bat genotypes, in two species of bats from a region of Colombia, requiring further studies to determine the relationhip between<jats:italic>Cryptosporidium<\/jats:italic>and bats in Colombia.<\/jats:p><\/jats:sec>","DOI":"10.1007\/s11686-023-00697-8","type":"journal-article","created":{"date-parts":[[2023,8,2]],"date-time":"2023-08-02T09:02:27Z","timestamp":1690966947000},"page":"676-682","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Molecular Detection and Genotyping of Cryptosporidium spp. Isolates from Bats in Colombia"],"prefix":"10.1007","volume":"68","author":[{"given":"Carlos Ramiro","family":"Silva-Ramos","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juliana","family":"Noriega","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rafael F.","family":"Fajardo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sandra M.","family":"Chala-Quintero","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adriana","family":"Del Pilar Pulido-Villamar\u00edn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jairo","family":"P\u00e9rez-Torres","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rubiela","family":"Casta\u00f1eda-Salazar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Claudia","family":"Cuervo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2023,8,2]]},"reference":[{"issue":"1","key":"697_CR1","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1111\/j.1472-765X.2006.01936.x","volume":"43","author":"O Sunnotel","year":"2006","unstructured":"Sunnotel O, Lowery CJ, Moore JE, Dooley JS, Xiao L, Millar BC, Rooney PJ, Snelling WJ (2006) Cryptosporidium. 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