{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T13:45:12Z","timestamp":1740145512485,"version":"3.37.3"},"reference-count":20,"publisher":"Springer Science and Business Media LLC","issue":"S1","license":[{"start":{"date-parts":[[2015,11,21]],"date-time":"2015-11-21T00:00:00Z","timestamp":1448064000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2015,11,21]],"date-time":"2015-11-21T00:00:00Z","timestamp":1448064000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Syst Synth Biol"],"published-print":{"date-parts":[[2015,12]]},"DOI":"10.1007\/s11693-015-9185-7","type":"journal-article","created":{"date-parts":[[2015,11,21]],"date-time":"2015-11-21T07:22:56Z","timestamp":1448090576000},"page":"57-62","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["On genome annotation of Brucellaphage Gadvasu (BpG): discovery of ORFans for integrated systems biology approaches"],"prefix":"10.1007","volume":"9","author":[{"given":"Deepti","family":"Chachra","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pushpinder","family":"Kaur","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Prasad","family":"Siddavatam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8535-278X","authenticated-orcid":false,"given":"Prashanth","family":"Suravajhala","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hari Mohan","family":"Saxena","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2015,11,21]]},"reference":[{"issue":"3","key":"9185_CR1","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1128\/MMBR.68.3.560-602.2004","volume":"68","author":"H Br\u00fcssow","year":"2004","unstructured":"Br\u00fcssow H, Canchaya C, Hardt W (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68(3):560\u2013602","journal-title":"Microbiol Mol Biol Rev"},{"doi-asserted-by":"crossref","unstructured":"Chachra D, Kaur H, Chandra M, Saxena HM (2012) Isolation, electron microscopy and physicochemical characterization of a brucellaphage against\u00a0brucella abortus\u00a0vaccine strain S19. Internet J Microbiol 10(2):1\u20137","key":"9185_CR2","DOI":"10.5580\/2c47"},{"issue":"Pt 12","key":"9185_CR3","doi-asserted-by":"publisher","first-page":"3509","DOI":"10.1099\/vir.0.82291-0","volume":"87","author":"AJ Davison","year":"2006","unstructured":"Davison AJ, Cunningham C, Sauerbier W, McKinnell RG (2006) Genome sequences of two frog herpesviruses. J Gen Virol 87(Pt 12):3509\u20133514","journal-title":"J Gen Virol"},{"issue":"2","key":"9185_CR4","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1016\/j.gene.2014.01.018","volume":"541","author":"J Farlow","year":"2014","unstructured":"Farlow J, Filippov AA, Sergueev KV, Hang J et al (2014) Comparative whole genome analysis of six diagnostic brucellaphages. Gene 541(2):115\u2013122","journal-title":"Gene"},{"unstructured":"Fastq Clipper. http:\/\/genomics-pubs.princeton.edu\/prv\/\u2026\/fastq-filter_mono_nucleotide.pl","key":"9185_CR5"},{"unstructured":"FastX toolkit. http:\/\/hannonlab.cshl.edu\/fastx_toolkit\/commandline.html","key":"9185_CR6"},{"issue":"4","key":"9185_CR7","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1016\/j.ygeno.2012.01.001","volume":"99","author":"V Flores","year":"2012","unstructured":"Flores V, L\u00f3pez-Merino A, Mendoza-Hernandez G, Guarneros G (2012) Comparative genomic analysis of two brucellaphages of distant origins. Genomics 99(4):233\u2013240","journal-title":"Genomics"},{"key":"9185_CR8","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1038\/nm0202-157","volume":"8","author":"B Homey","year":"2002","unstructured":"Homey B, Alenius H, Muller A, Soto H, Bowman EP, Yuan W, McEvoy L, Lauerma AI, Assmann T, Bunemann E, Lehto M, Wolff H, Yen D, Marxhausen H, To W, Sedgwick J, Ruzicka T, Lehmann P, Zlotnik A (2002) CCL27-CCR10 interactions regulate T cell-mediated skin inflammation. Nat Med 8:157\u2013165","journal-title":"Nat Med"},{"key":"9185_CR9","doi-asserted-by":"publisher","first-page":"703","DOI":"10.1038\/193703a0","volume":"193","author":"L Jablonski","year":"1962","unstructured":"Jablonski L (1962) Variability of Brucella phages. Nature 193:703\u2013704","journal-title":"Nature"},{"issue":"13","key":"9185_CR10","doi-asserted-by":"publisher","first-page":"7267","DOI":"10.1128\/JVI.03513-13","volume":"88","author":"SF Johnson","year":"2014","unstructured":"Johnson SF, Collins JT, D\u2019Souza VM, Telesnitsky A (2014) Determinants of Moloney murine leukemia virus Gag-Pol and genomic RNA proportions. J Virol 88(13):7267\u20137275","journal-title":"J Virol"},{"issue":"4","key":"9185_CR11","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1128\/MMBR.00011-11","volume":"75","author":"M Krupovic","year":"2011","unstructured":"Krupovic M, Prangishvili D, Hendrix RW, Bamford DH (2011) Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75(4):610\u2013635","journal-title":"Microbiol Mol Biol Rev"},{"issue":"9","key":"9185_CR12","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1101\/gr.092759.109","volume":"19","author":"M Krzywinski","year":"2009","unstructured":"Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19(9):1639\u20131645","journal-title":"Genome Res"},{"issue":"3","key":"9185_CR13","doi-asserted-by":"publisher","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"B Langmead","year":"2009","unstructured":"Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25","journal-title":"Genome Biol"},{"unstructured":"Maq software package. http:\/\/www.maq.sourceforge.net\/fq_all2std.pl","key":"9185_CR14"},{"key":"9185_CR15","volume-title":"Molecular cloning: laboratory manual","author":"J Sambrook","year":"1987","unstructured":"Sambrook J, Fritsch EF, Maniatis T (1987) Molecular cloning: laboratory manual, vol 1. Cold Spring Harbour Laboratory Press."},{"doi-asserted-by":"crossref","unstructured":"Staden R, Judge DP, Bonfield JK (2001) Sequence assembly and finishing methods bioinformatics. In: Baxevanis AD, Ouellette BFF (eds) A practical guide to the analysis of genes and proteins, 2nd edn. Wiley, New York","key":"9185_CR16","DOI":"10.1002\/0471223921.ch13"},{"key":"9185_CR17","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/s12985-015-0287-3","volume":"12","author":"E Tevdoradze","year":"2015","unstructured":"Tevdoradze E, Farlow J, Kotorashvili A, Skhirtladze N, Antadze I, Gunia S, Balarjishvili N, Kvachadze L, Kutateladze M (2015) Whole genome sequence comparison of ten diagnostic brucellaphages propagated on two Brucella abortus hosts. Virol J 12:66","journal-title":"Virol J"},{"key":"9185_CR18","doi-asserted-by":"publisher","first-page":"500","DOI":"10.1093\/bioinformatics\/btl629","volume":"23","author":"RL Warren","year":"2007","unstructured":"Warren RL, Sutton GG, Jones SJM, Holt RA (2007) Assembling millions of short DNA sequences using SSAKE. Bioinformatics 23:500\u2013501","journal-title":"Bioinformatics"},{"doi-asserted-by":"crossref","unstructured":"Zerbino DR (2010) Using the Velvet\u00a0de novo\u00a0assembler for short-read sequencing technologies. Curr Protoc Bioinform 11(Unit 11.5):1\u201313","key":"9185_CR19","DOI":"10.1002\/0471250953.bi1105s31"},{"issue":"7","key":"9185_CR20","doi-asserted-by":"publisher","first-page":"2999","DOI":"10.3390\/ijms10072999","volume":"10","author":"CZ Zhu","year":"2009","unstructured":"Zhu CZ, Xiong HY, Han J, Cui BY et al (2009) Molecular characterization of tb, a new approach for an ancient brucellaphage. Int J Mol Sci 10(7):2999\u20133011","journal-title":"Int J Mol Sci"}],"container-title":["Systems and Synthetic Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11693-015-9185-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11693-015-9185-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11693-015-9185-7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11693-015-9185-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,29]],"date-time":"2022-07-29T10:01:28Z","timestamp":1659088888000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11693-015-9185-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,11,21]]},"references-count":20,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2015,12]]}},"alternative-id":["9185"],"URL":"https:\/\/doi.org\/10.1007\/s11693-015-9185-7","relation":{},"ISSN":["1872-5325","1872-5333"],"issn-type":[{"type":"print","value":"1872-5325"},{"type":"electronic","value":"1872-5333"}],"subject":[],"published":{"date-parts":[[2015,11,21]]},"assertion":[{"value":"4 August 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"12 November 2015","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 November 2015","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 November 2015","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"This content has been made available to all.","name":"free","label":"Free to read"}]}}