{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,31]],"date-time":"2026-07-31T19:50:15Z","timestamp":1785527415205,"version":"3.56.0"},"reference-count":88,"publisher":"Springer Science and Business Media LLC","license":[{"start":{"date-parts":[[2026,7,29]],"date-time":"2026-07-29T00:00:00Z","timestamp":1785283200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,7,29]],"date-time":"2026-07-29T00:00:00Z","timestamp":1785283200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"name":"Hl\u00e1vka Foundation"},{"name":"Charles University Mobility Fund","award":["FM\/c\/2025-1-024"],"award-info":[{"award-number":["FM\/c\/2025-1-024"]}]},{"name":"Internationalisation Fund of the Faculty of Science of Charles University"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Folia Microbiol"],"DOI":"10.1007\/s12223-026-01560-9","type":"journal-article","created":{"date-parts":[[2026,7,29]],"date-time":"2026-07-29T03:58:35Z","timestamp":1785297515000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Diversity and antimicrobial potential of endophytic fungi from Egyptian desert medicinal plants"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0009-0002-3926-6781","authenticated-orcid":false,"given":"Tereza","family":"Je\u017ekov\u00e1","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5132-9453","authenticated-orcid":false,"given":"Mo\u2019men Hamed","family":"El-Katatny","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-1574-1656","authenticated-orcid":false,"given":"Mohamed A.","family":"Mawhoup","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1014-6922","authenticated-orcid":false,"given":"Usama Ramadan","family":"Abdelmohsen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,29]]},"reference":[{"key":"1560_CR1","first-page":"26","volume":"13","author":"MH Abass","year":"2014","unstructured":"Abass MH, Mohammed NH (2014) Morphological, molecular and pathological study on Nigrospora oryzae and Nigrospora sphaerica, the leaf spot fungi of date palm. Basra J Date Palm Res 13:26\u201338","journal-title":"Basra J Date Palm Res"},{"key":"1560_CR2","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1016\/j.aoas.2015.12.001","volume":"61","author":"ME Abd Elhalim","year":"2016","unstructured":"Abd Elhalim ME, Abo-Alatta OK, Habib SA, Abd Elbar OH (2016) The anatomical features of the desert halophytes Zygophyllum album L.F. and Nitraria retusa (Forssk.) Asch. Ann Agric Sci 61:97\u2013104. https:\/\/doi.org\/10.1016\/j.aoas.2015.12.001","journal-title":"Ann Agric Sci"},{"key":"1560_CR3","doi-asserted-by":"publisher","first-page":"62","DOI":"10.22161\/ijeab.105.7","volume":"10","author":"AIS Ahmed","year":"2025","unstructured":"Ahmed AIS, Zakaria HM (2025) Antifungal activity of endophytic Nigrospora species isolated from Pluchea plants against some fungal phytopathogens. Int J Environ Agric Biotechnol 10:62\u201376. https:\/\/doi.org\/10.22161\/ijeab.105.7","journal-title":"Int J Environ Agric Biotechnol"},{"key":"1560_CR4","first-page":"1229","volume":"29","author":"MM Al-Khawaldeh","year":"2020","unstructured":"Al-Khawaldeh MM, Araj SE, Alananbeh KM, Al Antary TM (2020) Wheat cultivable fungal endophytes in Jordan. Fresenius Environ Bull 29:1229\u20131240","journal-title":"Fresenius Environ Bull"},{"key":"1560_CR5","first-page":"125","volume":"1","author":"AH Al-Saadoon","year":"2001","unstructured":"Al-Saadoon AH, Abdullah SK (2001) Some interesting Ascomycetes from Iraq. Iraqi J Biol 1:125\u2013134","journal-title":"Iraqi J Biol"},{"key":"1560_CR6","doi-asserted-by":"publisher","first-page":"863","DOI":"10.3852\/10-349","volume":"103","author":"B Asgari","year":"2011","unstructured":"Asgari B, Zare R (2011) The genus Chaetomium in Iran, a phylogenetic study including six new species. Mycologia 103:863\u2013882. https:\/\/doi.org\/10.3852\/10-349","journal-title":"Mycologia"},{"key":"1560_CR7","doi-asserted-by":"publisher","DOI":"10.1016\/j.microb.2025.100617","volume":"9","author":"R Baweja","year":"2025","unstructured":"Baweja R, Singh M, Shukla S et al (2025) Antimicrobial resistance: mechanism, causes, prevention and societal impact. The Microbe 9:100617. https:\/\/doi.org\/10.1016\/j.microb.2025.100617","journal-title":"The Microbe"},{"key":"1560_CR8","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2022.1020404","volume":"13","author":"G Beccari","year":"2022","unstructured":"Beccari G, Hao G, Liu H (2022) Editorial: Fusarium pathogenesis: infection mechanisms and disease progression in host plants. Front Plant Sci 13:1020404. https:\/\/doi.org\/10.3389\/fpls.2022.1020404","journal-title":"Front Plant Sci"},{"key":"1560_CR9","doi-asserted-by":"publisher","first-page":"168","DOI":"10.37427\/botcro-2022-014","volume":"81","author":"K Boubetra","year":"2022","unstructured":"Boubetra K, Amirouche N, Amirouche R (2022) Morpho-anatomical diversity of five species of genus Asparagus (Asparagaceae) from Algeria. Acta Bot Croat 81:168\u2013176. https:\/\/doi.org\/10.37427\/botcro-2022-014","journal-title":"Acta Bot Croat"},{"key":"1560_CR10","doi-asserted-by":"publisher","first-page":"153","DOI":"10.5943\/ppq\/8\/2\/7","volume":"8","author":"R Brahamanage","year":"2018","unstructured":"Brahamanage R, Hyde K, Li X et al (2018) Are pathogenic isolates of Stemphylium host specific and cosmopolitan? Plant Pathol Quar 8:153\u2013164. https:\/\/doi.org\/10.5943\/ppq\/8\/2\/7","journal-title":"Plant Pathol Quar"},{"key":"1560_CR11","doi-asserted-by":"publisher","first-page":"869","DOI":"10.1039\/c9np00011a","volume":"36","author":"LK Caesar","year":"2019","unstructured":"Caesar LK, Cech NB (2019) Synergy and antagonism in natural product extracts: when 1 + 1 does not equal 2. Nat Prod Rep 36:869\u2013888. https:\/\/doi.org\/10.1039\/c9np00011a","journal-title":"Nat Prod Rep"},{"key":"1560_CR12","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1080\/00275514.1999.12061051","volume":"91","author":"I Carbone","year":"1999","unstructured":"Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553\u2013556. https:\/\/doi.org\/10.1080\/00275514.1999.12061051","journal-title":"Mycologia"},{"key":"1560_CR13","doi-asserted-by":"publisher","first-page":"234","DOI":"10.53516\/ajfr.1700023","volume":"11","author":"A \u00c7elik","year":"2025","unstructured":"\u00c7elik A, Oskay F (2025) Is Macrophomina phaseolina an emerging threat in Turkish forest nurseries? Anadolu Orman Arastirmalari Derg 11:234\u2013242. https:\/\/doi.org\/10.53516\/ajfr.1700023","journal-title":"Anadolu Orman Arastirmalari Derg"},{"key":"1560_CR14","doi-asserted-by":"publisher","first-page":"573","DOI":"10.31396\/biodiv.jour.2021.12.3.573.583","volume":"12","author":"I Cherak","year":"2021","unstructured":"Cherak I, Si Bachir A, Cherak L et al (2021) Diversity and distribution patterns of endophytic mycoflora of Atlas cedar (Cedrus atlantica Manetti) needles in Belezma biosphere reserve (Batna, Algeria). Biodivers J 12:573\u2013583. https:\/\/doi.org\/10.31396\/biodiv.jour.2021.12.3.573.583","journal-title":"Biodivers J"},{"key":"1560_CR15","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1016\/j.flora.2018.08.003","volume":"248","author":"C Chimona","year":"2018","unstructured":"Chimona C, Koukos D, Meletiou-Christou MS et al (2018) Functional traits of floral and leaf surfaces of the early spring flowering Asphodelus ramosus in the Mediterranean region. Flora 248:10\u201321. https:\/\/doi.org\/10.1016\/j.flora.2018.08.003","journal-title":"Flora"},{"key":"1560_CR16","doi-asserted-by":"publisher","first-page":"101","DOI":"10.3114\/fuse.2021.08.09","volume":"8","author":"PW Crous","year":"2021","unstructured":"Crous PW, Hern\u00e1ndez-Restrepo M, van Iperen AL et al (2021) Citizen science project reveals novel fusarioid fungi (Nectriaceae, Sordariomycetes) from urban soils. Fungal Syst Evol 8:101\u2013127. https:\/\/doi.org\/10.3114\/fuse.2021.08.09","journal-title":"Fungal Syst Evol"},{"key":"1560_CR17","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1080\/26395940.2024.2323123","volume":"36","author":"J Cui","year":"2024","unstructured":"Cui J, Nie F, Zhao Y et al (2024) A review on plant endophytes in response to abiotic stress. Environ Pollut Bioavailab 36:167\u2013183. https:\/\/doi.org\/10.1080\/26395940.2024.2323123","journal-title":"Environ Pollut Bioavailab"},{"key":"1560_CR18","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13205-022-03439-1","volume":"13","author":"D Da\u00e2ssi","year":"2023","unstructured":"Da\u00e2ssi D, Alharbi SR (2023) Degradation of endocrine-disrupting chemicals in wastewater by new thermophilic fungal isolates and their laccases. 3 Biotech 13:1\u201315. https:\/\/doi.org\/10.1007\/s13205-022-03439-1","journal-title":"3 Biotech"},{"key":"1560_CR19","doi-asserted-by":"publisher","first-page":"2369","DOI":"10.1038\/s41467-019-10373-z","volume":"10","author":"E Egidi","year":"2019","unstructured":"Egidi E, Delgado-Baquerizo M, Plett JM et al (2019) A few Ascomycota taxa dominate soil fungal communities worldwide. Nat Commun 10:2369. https:\/\/doi.org\/10.1038\/s41467-019-10373-z","journal-title":"Nat Commun"},{"key":"1560_CR20","first-page":"6208","volume":"31","author":"AM Eisa","year":"2022","unstructured":"Eisa AM, Mekawey AAI, El-Metwally MM et al (2022) Fungal endophytes of some medicinal plants growing in northwestern coast of Egypt: isolation, identification and two-way clustering analysis of their antimicrobial activity. Fresenius Environ Bull 31:6208\u20136220","journal-title":"Fresenius Environ Bull"},{"key":"1560_CR21","doi-asserted-by":"publisher","first-page":"583","DOI":"10.21608\/ejchem.2025.368979.11470","volume":"68","author":"MO El Shabrawy","year":"2025","unstructured":"El Shabrawy MO, Farid MM, Ragab NA et al (2025) Phytochemical profiling, cytotoxic effect, and in vitro anti-diabetic assessment of Asparagus horridus L with in silico insights of brassicin. Egypt J Chem 68:583\u2013600. https:\/\/doi.org\/10.21608\/ejchem.2025.368979.11470","journal-title":"Egypt J Chem"},{"key":"1560_CR22","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-021-93123-w","volume":"11","author":"EGAEM El-Dawy","year":"2021","unstructured":"El-Dawy EGAEM, Gherbawy YA, Hussein MA (2021) Morphological, molecular characterization, plant pathogenicity and biocontrol of Cladosporium complex groups associated with faba beans. Sci Rep 11:1\u201312. https:\/\/doi.org\/10.1038\/s41598-021-93123-w","journal-title":"Sci Rep"},{"key":"1560_CR23","doi-asserted-by":"publisher","first-page":"1039","DOI":"10.4315\/0362-028X-56.12.1039","volume":"56","author":"DC Enigl","year":"1993","unstructured":"Enigl DC, King AD Jr., T\u00f6r\u00f6k T (1993) Talaromyces trachyspermus, a heat-resistant mold isolated from fruit juice. J Food Prot 56:1039\u20131042. https:\/\/doi.org\/10.4315\/0362-028X-56.12.1039","journal-title":"J Food Prot"},{"key":"1560_CR24","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1016\/j.sajb.2022.07.004","volume":"150","author":"H Farhat","year":"2022","unstructured":"Farhat H, Urooj F, Sohail N et al (2022) Evaluation of antibacterial potential of endophytic fungi and GC-MS profiling of metabolites from Talaromyces trachyspermus. S Afr J Bot 150:240\u2013247. https:\/\/doi.org\/10.1016\/j.sajb.2022.07.004","journal-title":"S Afr J Bot"},{"key":"1560_CR25","doi-asserted-by":"publisher","DOI":"10.1016\/j.phytochem.2025.114737","volume":"243","author":"XY Feng","year":"2025","unstructured":"Feng XY, Yang SQ, Li XM et al (2025) Antifungal phenolic glucosides and related congeners from the cold-seep-derived Talaromyces trachyspermus CS-106. Phytochemistry 243:114737. https:\/\/doi.org\/10.1016\/j.phytochem.2025.114737","journal-title":"Phytochemistry"},{"key":"1560_CR26","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/femsre\/fuad061","volume":"47","author":"C Fernandes","year":"2023","unstructured":"Fernandes C, Casadevall A, Gon\u00e7alves T (2023) Mechanisms of Alternaria pathogenesis in animals and plants. FEMS Microbiol Rev 47:1\u201325. https:\/\/doi.org\/10.1093\/femsre\/fuad061","journal-title":"FEMS Microbiol Rev"},{"key":"1560_CR27","doi-asserted-by":"publisher","first-page":"2239","DOI":"10.1111\/nph.15504","volume":"221","author":"H Giauque","year":"2019","unstructured":"Giauque H, Connor EW, Hawkes CV (2019) Endophyte traits relevant to stress tolerance, resource use and habitat of origin predict effects on host plants. New Phytol 221:2239\u20132249. https:\/\/doi.org\/10.1111\/nph.15504","journal-title":"New Phytol"},{"key":"1560_CR28","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-28192-5","author":"V Gonz\u00e1lez-Men\u00e9ndez","year":"2018","unstructured":"Gonz\u00e1lez-Men\u00e9ndez V, Crespo G, De Pedro N et al (2018) Fungal endophytes from arid areas of Andalusia: high potential sources for antifungal and antitumoral agents. Sci Rep. https:\/\/doi.org\/10.1038\/s41598-018-28192-5","journal-title":"Sci Rep"},{"key":"1560_CR29","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1002\/jobm.201700517","volume":"58","author":"I Grishkan","year":"2018","unstructured":"Grishkan I (2018) Thermotolerant mycobiota of Israeli soils. J Basic Microbiol 58:30\u201340. https:\/\/doi.org\/10.1002\/jobm.201700517","journal-title":"J Basic Microbiol"},{"key":"1560_CR30","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1016\/S1002-0160(15)30003-5","volume":"25","author":"I Grishkan","year":"2015","unstructured":"Grishkan I, Jia RL, Kidron GJ, Li XR (2015) Cultivable microfungal communities inhabiting biological soil crusts in the Tengger Desert, China. Pedosphere 25:351\u2013363. https:\/\/doi.org\/10.1016\/S1002-0160(15)30003-5","journal-title":"Pedosphere"},{"key":"1560_CR31","first-page":"95","volume":"41","author":"TA Hall","year":"1999","unstructured":"Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT. Nucleic Acids Symp Ser 41:95\u201398","journal-title":"Nucleic Acids Symp Ser"},{"key":"1560_CR32","doi-asserted-by":"publisher","first-page":"145","DOI":"10.11646\/phytotaxa.388.1.8","volume":"388","author":"B Halo","year":"2019","unstructured":"Halo B, Maharachchikumbura SSN, Al-Yahyai RA, Al-Sadi AM (2019) Cladosporium omanense, a new endophytic species from Zygophyllum coccineum in Oman. Phytotaxa 388:145\u2013154. https:\/\/doi.org\/10.11646\/phytotaxa.388.1.8","journal-title":"Phytotaxa"},{"key":"1560_CR33","doi-asserted-by":"publisher","first-page":"293","DOI":"10.1128\/mmbr.00050-14","volume":"79","author":"PR Hardoim","year":"2015","unstructured":"Hardoim PR, van Overbeek LS, Berg G et al (2015) The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiol Mol Biol Rev 79:293\u2013320. https:\/\/doi.org\/10.1128\/mmbr.00050-14","journal-title":"Microbiol Mol Biol Rev"},{"key":"1560_CR34","doi-asserted-by":"publisher","unstructured":"Hemmati R, Dolatabadian A, Saeedi S, Batley J (2025) Draft genome sequence of Talaromyces trachyspermus, a biocontrol fungus isolated from broomrape. G3 Genes, Genomes, Genet 1\u201327. https:\/\/doi.org\/10.1093\/g3journal\/jkaf280","DOI":"10.1093\/g3journal\/jkaf280"},{"key":"1560_CR35","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1016\/j.mycres.2007.10.014","volume":"112","author":"MT Hoffman","year":"2008","unstructured":"Hoffman MT, Arnold AE (2008) Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees. Mycol Res 112:331\u2013344. https:\/\/doi.org\/10.1016\/j.mycres.2007.10.014","journal-title":"Mycol Res"},{"key":"1560_CR36","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1556\/1886.2024.00035","volume":"14","author":"TJ Hossain","year":"2024","unstructured":"Hossain TJ (2024) Methods for screening and evaluation of antimicrobial activity: a review of protocols, advantages, and limitations. Eur J Microbiol Immunol 14:97\u2013115. https:\/\/doi.org\/10.1556\/1886.2024.00035","journal-title":"Eur J Microbiol Immunol"},{"key":"1560_CR37","doi-asserted-by":"publisher","first-page":"595","DOI":"10.1007\/s11557-021-01704-w","volume":"20","author":"SRM Ibrahim","year":"2021","unstructured":"Ibrahim SRM, Mohamed SGA, Sindi IA, Mohamed GA (2021) Biologically active secondary metabolites and biotechnological applications of species of the family Chaetomiaceae (Sordariales): an updated review from 2016 to 2021. Mycol Prog 20:595\u2013639. https:\/\/doi.org\/10.1007\/s11557-021-01704-w","journal-title":"Mycol Prog"},{"key":"1560_CR38","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1007\/BF00454592","volume":"94","author":"Y Ishibashi","year":"1986","unstructured":"Ishibashi Y, Kaufman HE, Matsumoto T, Kagawa S (1986) The pathogenicities of Cylindrocarpon tonkinense and Fusarium solani in the rabbit cornea. Mycopathologia 94:145\u2013152. https:\/\/doi.org\/10.1007\/BF00454592","journal-title":"Mycopathologia"},{"key":"1560_CR39","doi-asserted-by":"publisher","first-page":"1680","DOI":"10.4014\/JMB.2006.06050","volume":"30","author":"I Khalmuratova","year":"2020","unstructured":"Khalmuratova I, Choi DH, Woo JR et al (2020) Diversity and plant growth-promoting effects of fungal endophytes isolated from salt-tolerant plants. J Microbiol Biotechnol 30:1680\u20131687. https:\/\/doi.org\/10.4014\/JMB.2006.06050","journal-title":"J Microbiol Biotechnol"},{"key":"1560_CR40","first-page":"2685","volume":"20","author":"C Liu","year":"2018","unstructured":"Liu C, Chang Z, Liu C (2018) Biocontrol effect of a novel strain LB-1 on Exserohilum turcicum and its growth-promoting effect on maize. Int J Agric Biol 20:2685\u20132691","journal-title":"Int J Agric Biol"},{"key":"1560_CR41","doi-asserted-by":"publisher","first-page":"1031","DOI":"10.1094\/PDIS-01-24-0201-RE","volume":"109","author":"D Liu","year":"2025","unstructured":"Liu D, Zhao W, Xia J et al (2025) Fusarium and Neocosmospora species associated with the decline of Metasequoia glyptostroboides in China. Plant Dis 109:1031\u20131050. https:\/\/doi.org\/10.1094\/PDIS-01-24-0201-RE","journal-title":"Plant Dis"},{"key":"1560_CR42","doi-asserted-by":"publisher","DOI":"10.1016\/j.mcat.2025.115020","volume":"579","author":"J Lu","year":"2025","unstructured":"Lu J, Jiang Z, Xie X et al (2025) Efficient biosynthesis of Pro-Xylane through semi-rational engineering of carbonyl reductase from Canariomyces notabilis. Mol Catal 579:115020. https:\/\/doi.org\/10.1016\/j.mcat.2025.115020","journal-title":"Mol Catal"},{"key":"1560_CR43","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.1007\/s10529-015-1814-4","volume":"37","author":"J Ludwig-M\u00fcller","year":"2015","unstructured":"Ludwig-M\u00fcller J (2015) Plants and endophytes: equal partners in secondary metabolite production? Biotechnol Lett 37:1325\u20131334. https:\/\/doi.org\/10.1007\/s10529-015-1814-4","journal-title":"Biotechnol Lett"},{"key":"1560_CR44","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2021.634397","volume":"12","author":"N Marquez","year":"2021","unstructured":"Marquez N, Giachero ML, Declerck S, Ducasse DA (2021) Macrophomina phaseolina: general characteristics of pathogenicity and methods of control. Front Plant Sci 12:634397. https:\/\/doi.org\/10.3389\/fpls.2021.634397","journal-title":"Front Plant Sci"},{"key":"1560_CR45","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1007\/s00248-014-0563-6","volume":"70","author":"NC Massimo","year":"2015","unstructured":"Massimo NC, Devan MM, Arendt KR et al (2015) Fungal endophytes in above-ground tissues of desert plants: infrequent in culture, but highly diverse and distinctive symbionts. Microb Ecol 70:61\u201376. https:\/\/doi.org\/10.1007\/s00248-014-0563-6","journal-title":"Microb Ecol"},{"key":"1560_CR46","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1007\/s10658-020-01984-0","volume":"157","author":"JA Mauricio-Castillo","year":"2020","unstructured":"Mauricio-Castillo JA, Salas-Mu\u00f1oz S, Reveles-Torres LR et al (2020) Could Alternaria solani IA300 be a plant growth-promoting fungus? Eur J Plant Pathol 157:413\u2013419. https:\/\/doi.org\/10.1007\/s10658-020-01984-0","journal-title":"Eur J Plant Pathol"},{"key":"1560_CR47","doi-asserted-by":"publisher","first-page":"57","DOI":"10.21608\/mb.2024.341385","volume":"8","author":"MI Mossa","year":"2024","unstructured":"Mossa MI, Gezaf SA, Ibrahim AA, Hamedo HA (2024) Preliminary screening of endophytic fungi hosted some wild plants in North Sinai for biogenic production of silver nanoparticles. Microbial Biosystems 8:57\u201373. https:\/\/doi.org\/10.21608\/mb.2024.341385","journal-title":"Microbial Biosystems"},{"key":"1560_CR48","doi-asserted-by":"publisher","first-page":"2795","DOI":"10.1007\/s11101-024-10004-6","volume":"24","author":"L Nahar","year":"2025","unstructured":"Nahar L, Al Groshi A, Thangavelu L et al (2025) Phytochemistry and therapeutic potential of the genus Asphodelus L.: an update. Phytochem Rev 24:2795\u20132831. https:\/\/doi.org\/10.1007\/s11101-024-10004-6","journal-title":"Phytochem Rev"},{"key":"1560_CR49","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1007\/s13199-019-00614-6","volume":"78","author":"S Naik","year":"2019","unstructured":"Naik S, Shaanker RU, Ravikanth G, Dayanandan S (2019) How and why do endophytes produce plant secondary metabolites? Symbiosis 78:193\u2013201. https:\/\/doi.org\/10.1007\/s13199-019-00614-6","journal-title":"Symbiosis"},{"key":"1560_CR50","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1006\/mpev.1996.0376","volume":"7","author":"K O\u2019Donnell","year":"1997","unstructured":"O\u2019Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7:103\u2013116. https:\/\/doi.org\/10.1006\/mpev.1996.0376","journal-title":"Mol Phylogenet Evol"},{"key":"1560_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-025-01202-z","volume":"15","author":"ME Osman","year":"2025","unstructured":"Osman ME, Abou-zeid AM, Abu-Saied MA et al (2025) Diversity and bioprospecting activities of endophytic fungi associated with different Egyptian medicinal plants. Sci Rep 15:1\u201316. https:\/\/doi.org\/10.1038\/s41598-025-01202-z","journal-title":"Sci Rep"},{"key":"1560_CR52","unstructured":"Ounis R (2024) Pharmacological activities of Thymelaea hirsuta L. extracts: in vitro and in vivo studies. University Ferhat Abbas S\u00e9tif 1"},{"key":"1560_CR53","doi-asserted-by":"publisher","DOI":"10.15446\/agron.colomb.v43n2.120512","volume":"43","author":"OJ Parra Pe\u00f1alosa","year":"2025","unstructured":"Parra Pe\u00f1alosa OJ, Villamizar Gallardo AR, Garc\u00eda-Contreras R et al (2025) Morpho-molecular characterization of fungi in harvested fruits of Theobroma cacao L. Agron Colomb 43:e120512. https:\/\/doi.org\/10.15446\/agron.colomb.v43n2.120512","journal-title":"Agron Colomb"},{"key":"1560_CR54","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/jof11080581","volume":"11","author":"GHS Peixoto","year":"2025","unstructured":"Peixoto GHS, Silva TF, Copati LF et al (2025) The role of Setophoma terrestris in pink root disease: new insights and host range in Brazil. J Fungi 11:1\u201312. https:\/\/doi.org\/10.3390\/jof11080581","journal-title":"J Fungi"},{"key":"1560_CR55","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1146\/annurev-phyto-080508-081831","volume":"49","author":"A Porras-Alfaro","year":"2011","unstructured":"Porras-Alfaro A, Bayman P (2011) Hidden fungi, emergent properties: endophytes and microbiomes. Annu Rev Phytopathol 49:291\u2013315. https:\/\/doi.org\/10.1146\/annurev-phyto-080508-081831","journal-title":"Annu Rev Phytopathol"},{"key":"1560_CR56","doi-asserted-by":"publisher","DOI":"10.3389\/ffunb.2024.1400380","author":"L Rabbachin","year":"2024","unstructured":"Rabbachin L, Nir I, Waldherr M et al (2024) Diversity of fungi associated with petroglyph sites in the Negev Desert, Israel, and their potential role in bioweathering. Front Fungal Biol. https:\/\/doi.org\/10.3389\/ffunb.2024.1400380","journal-title":"Front Fungal Biol"},{"key":"1560_CR57","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12866-022-02651-6","volume":"22","author":"YM Rashad","year":"2022","unstructured":"Rashad YM, Abdalla SA, Shehata AS (2022) Aspergillus flavus YRB2 from Thymelaea hirsuta (L.) Endl., a non-aflatoxigenic endophyte with ability to overexpress defense-related genes against Fusarium root rot of maize. BMC Microbiol 22:1\u201314. https:\/\/doi.org\/10.1186\/s12866-022-02651-6","journal-title":"BMC Microbiol"},{"key":"1560_CR58","doi-asserted-by":"publisher","DOI":"10.3390\/jof10010067","volume":"10","author":"N Rungjindamai","year":"2024","unstructured":"Rungjindamai N, Jones EBG (2024) Why are there so few Basidiomycota and basal fungi as endophytes? A review. J Fungi 10:67. https:\/\/doi.org\/10.3390\/jof10010067","journal-title":"J Fungi"},{"key":"1560_CR59","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1007\/s42398-019-00045-5","volume":"2","author":"S Sahu","year":"2019","unstructured":"Sahu S, Prakash A, Shende K (2019) Talaromyces trachyspermus, an endophyte from Withania somnifera with plant growth promoting attributes. Environ Sustain 2:13\u201321. https:\/\/doi.org\/10.1007\/s42398-019-00045-5","journal-title":"Environ Sustain"},{"key":"1560_CR60","doi-asserted-by":"publisher","first-page":"109","DOI":"10.3767\/persoonia.2018.41.06","volume":"41","author":"M Sandoval-Denis","year":"2018","unstructured":"Sandoval-Denis M, Crous PW (2018) Removing chaos from confusion: assigning names to common human and animal pathogens in Neocosmospora. Persoonia Mol Phylogeny Evol Fungi 41:109\u2013129. https:\/\/doi.org\/10.3767\/persoonia.2018.41.06","journal-title":"Persoonia Mol Phylogeny Evol Fungi"},{"key":"1560_CR61","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1007\/s13199-017-0527-y","volume":"75","author":"MB Sangamesh","year":"2018","unstructured":"Sangamesh MB, Jambagi S, Vasanthakumari MM et al (2018) Thermotolerance of fungal endophytes isolated from plants adapted to the Thar Desert, India. Symbiosis 75:135\u2013147. https:\/\/doi.org\/10.1007\/s13199-017-0527-y","journal-title":"Symbiosis"},{"key":"1560_CR62","doi-asserted-by":"crossref","unstructured":"Schulz B, Boyle C (2006) What are endophytes? Soil biology. Springer, Berlin, Heidelberg, pp 1\u201313","DOI":"10.1007\/3-540-33526-9_1"},{"key":"1560_CR63","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-023-03085-4","volume":"23","author":"NH Shady","year":"2023","unstructured":"Shady NH, Sobhy SK, Mostafa YA et al (2023) Phytochemical analysis and anti-infective potential of fungal endophytes isolated from Nigella sativa seeds. BMC Microbiol 23:343. https:\/\/doi.org\/10.1186\/s12866-023-03085-4","journal-title":"BMC Microbiol"},{"key":"1560_CR64","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1016\/s0140-1963(18)30615-3","volume":"23","author":"KH Shaltout","year":"1992","unstructured":"Shaltout KH (1992) Nutrient status of Thymelaea hirsuta (L.) Endl. in Egypt. J Arid Environ 23:423\u2013432. https:\/\/doi.org\/10.1016\/s0140-1963(18)30615-3","journal-title":"J Arid Environ"},{"key":"1560_CR65","doi-asserted-by":"publisher","first-page":"64","DOI":"10.26682\/ajuod.2023.26.1.7","volume":"26","author":"RS Shareef","year":"2023","unstructured":"Shareef RS, Hassan WA (2023) First record of Dactylonectria alcacerensis that cause grapevine black foot disease in Iraq. J Univ Duhok 26:64\u201369. https:\/\/doi.org\/10.26682\/ajuod.2023.26.1.7","journal-title":"J Univ Duhok"},{"key":"1560_CR66","doi-asserted-by":"publisher","first-page":"1","DOI":"10.21608\/aprh.2019.5699.1066","volume":"3","author":"E Shawky","year":"2019","unstructured":"Shawky E, Gabr N, El-gindi M, Mekky R (2019) A comprehensive review on genus Zygophyllum. J Adv Pharm Res 3:1\u201316. https:\/\/doi.org\/10.21608\/aprh.2019.5699.1066","journal-title":"J Adv Pharm Res"},{"key":"1560_CR67","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2015.00440","volume":"6","author":"R Sheibani-Tezerji","year":"2015","unstructured":"Sheibani-Tezerji R, Naveed M, Jehl MA et al (2015) The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements. Front Microbiol 6:1\u201316. https:\/\/doi.org\/10.3389\/fmicb.2015.00440","journal-title":"Front Microbiol"},{"key":"1560_CR68","doi-asserted-by":"publisher","first-page":"1269","DOI":"10.33545\/26174693.2024.v8.i8p.2032","volume":"8","author":"D Shree","year":"2024","unstructured":"Shree D, Jagdishbhai PJ, Dineshkumar HD, Dipakkumar MT (2024) Endophytic microorganisms: their crucial role in plant health and pathogen defense. Int J Adv Biochem Res 8:1269\u20131273. https:\/\/doi.org\/10.33545\/26174693.2024.v8.i8p.2032","journal-title":"Int J Adv Biochem Res"},{"key":"1560_CR69","doi-asserted-by":"publisher","first-page":"3","DOI":"10.37427\/botcro-2020-001","volume":"79","author":"W Sidhoum","year":"2020","unstructured":"Sidhoum W, Bahi K, Fortas Z (2020) The effect of salinity gradient and heavy metal pollution on arbuscular mycorrhizal fungal community structure in some Algerian wetlands. Acta Bot Croat 79:3\u201314. https:\/\/doi.org\/10.37427\/botcro-2020-001","journal-title":"Acta Bot Croat"},{"key":"1560_CR70","doi-asserted-by":"publisher","DOI":"10.1016\/j.microb.2025.100260","volume":"6","author":"AP Sol\u00eds-Hern\u00e1ndez","year":"2025","unstructured":"Sol\u00eds-Hern\u00e1ndez AP, Rodr\u00edguez-Tovar AV, Carballar-Hern\u00e1ndez S et al (2025) Fungi (DSE, AMF) involved in the natural attenuation and rehabilitation of the inhospitable conditions prevailing in an abandoned Pb-, Cd-, As-polluted mine-tailing deposit. Microbe 6:100260. https:\/\/doi.org\/10.1016\/j.microb.2025.100260","journal-title":"Microbe"},{"key":"1560_CR71","doi-asserted-by":"publisher","first-page":"242","DOI":"10.3767\/003158515X689135","volume":"35","author":"JB Stielow","year":"2015","unstructured":"Stielow JB, L\u00e9vesque CA, Seifert KA et al (2015) One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia Mol Phylogeny Evol Fungi 35:242\u2013263. https:\/\/doi.org\/10.3767\/003158515X689135","journal-title":"Persoonia Mol Phylogeny Evol Fungi"},{"key":"1560_CR72","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fpls.2023.1248319","volume":"14","author":"S Tsipinana","year":"2023","unstructured":"Tsipinana S, Husseiny S, Alayande KA et al (2023) Contribution of endophytes towards improving plant bioactive metabolites: a rescue option against red-taping of medicinal plants. Front Plant Sci 14:1\u201320. https:\/\/doi.org\/10.3389\/fpls.2023.1248319","journal-title":"Front Plant Sci"},{"key":"1560_CR73","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-07436-w","author":"V Vadlapudi","year":"2017","unstructured":"Vadlapudi V, Borah N, Yellusani KR et al (2017) Aspergillus secondary metabolite database, a resource to understand the secondary metabolome of Aspergillus genus. Sci Rep. https:\/\/doi.org\/10.1038\/s41598-017-07436-w","journal-title":"Sci Rep"},{"key":"1560_CR74","doi-asserted-by":"publisher","first-page":"747","DOI":"10.1128\/9781683670131.ch47","volume":"7","author":"M Vestergaard","year":"2019","unstructured":"Vestergaard M, Frees D, Ingmer H (2019) Antibiotic resistance and the MRSA problem. Microbiol Spectr 7:747\u2013765. https:\/\/doi.org\/10.1128\/9781683670131.ch47","journal-title":"Microbiol Spectr"},{"key":"1560_CR75","first-page":"185","volume":"12","author":"JA von Arx","year":"1984","unstructured":"von Arx JA (1984) Canariomyces notabilis, a peculiar ascomycete from the Canary Islands. Persoonia 12:185\u2013187","journal-title":"Persoonia"},{"key":"1560_CR77","doi-asserted-by":"publisher","first-page":"121","DOI":"10.3114\/sim.2022.101.03","volume":"101","author":"XW Wang","year":"2022","unstructured":"Wang XW, Han PJ, Bai FY et al (2022) Taxonomy, phylogeny and identification of Chaetomiaceae with emphasis on thermophilic species. Stud Mycol 101:121\u2013243. https:\/\/doi.org\/10.3114\/sim.2022.101.03","journal-title":"Stud Mycol"},{"key":"1560_CR76","doi-asserted-by":"publisher","first-page":"345","DOI":"10.13346\/j.mycosystema.140136","volume":"34","author":"Y Wang","year":"2015","unstructured":"Wang Y, Wang Y-R, Han Y-F, Liang Z-Q (2015) A new thermotolerant species of Taifanglania. Mycosystema 34:345\u2013349. https:\/\/doi.org\/10.13346\/j.mycosystema.140136","journal-title":"Mycosystema"},{"key":"1560_CR78","doi-asserted-by":"publisher","first-page":"87","DOI":"10.13304\/j.nykjdb.2022.0973","volume":"25","author":"X Wang","year":"2023","unstructured":"Wang X, Li J, Li C et al (2023) Identification and biological characteristics of a Thelonectria pathogenic fungi of Potentilla anserina L. J Agric Sci Technol 25:87\u201395. https:\/\/doi.org\/10.13304\/j.nykjdb.2022.0973","journal-title":"J Agric Sci Technol"},{"key":"1560_CR79","doi-asserted-by":"publisher","first-page":"10754","DOI":"10.3390\/molecules170910754","volume":"17","author":"M Waqas","year":"2012","unstructured":"Waqas M, Khan AL, Kamran M et al (2012) Endophytic fungi produce gibberellins and indoleacetic acid and promotes host-plant growth during stress. Molecules 17:10754\u201310773. https:\/\/doi.org\/10.3390\/molecules170910754","journal-title":"Molecules"},{"key":"1560_CR80","doi-asserted-by":"publisher","DOI":"10.1093\/acprof:oso\/9780198732754.001.0001","volume-title":"The biology of deserts","author":"D Ward","year":"2016","unstructured":"Ward D (2016) The biology of deserts, 2nd edn. Oxford University Press","edition":"2nd edn"},{"key":"1560_CR81","doi-asserted-by":"crossref","unstructured":"White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 315\u2013322","DOI":"10.1016\/B978-0-12-372180-8.50042-1"},{"key":"1560_CR82","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1515\/hepo-2017-0025","volume":"63","author":"K Wielgusz","year":"2017","unstructured":"Wielgusz K, Irzykowska L (2017) Occurrence of pathogenic and endophytic fungi and their influence on quality of medicinal plants applied in management of neurological diseases and mental disorders. Herba Pol 63:57\u201369. https:\/\/doi.org\/10.1515\/hepo-2017-0025","journal-title":"Herba Pol"},{"key":"1560_CR83","doi-asserted-by":"publisher","first-page":"e00629","DOI":"10.1016\/j.btre.2021.e00629","volume":"30","author":"G Yadav","year":"2021","unstructured":"Yadav G, Meena M (2021) Bioprospecting of endophytes in medicinal plants of Thar Desert: An attractive resource for biopharmaceuticals. Biotechnol Reports 30:e00629. https:\/\/doi.org\/10.1016\/j.btre.2021.e00629","journal-title":"Biotechnol Reports"},{"key":"1560_CR84","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/biology10100961","volume":"10","author":"Q Zhang","year":"2021","unstructured":"Zhang Q, White JF (2021) Bioprospecting desert plants for endophytic and biostimulant microbes: a strategy for enhancing agricultural production in a hotter, drier future. Biology (Basel) 10:1\u201327. https:\/\/doi.org\/10.3390\/biology10100961","journal-title":"Biology (Basel)"},{"key":"1560_CR85","doi-asserted-by":"publisher","first-page":"768","DOI":"10.3852\/14-173","volume":"107","author":"Y Zhang","year":"2015","unstructured":"Zhang Y, Liu F, Wu W, Cai L (2015) A phylogenetic assessment and taxonomic revision of the thermotolerant hyphomycete genera Acrophialophora and Taifanglania. Mycologia 107:768\u2013779. https:\/\/doi.org\/10.3852\/14-173","journal-title":"Mycologia"},{"key":"1560_CR86","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13225-025-00567-w","volume":"135","author":"P Zhao","year":"2025","unstructured":"Zhao P, Li BW, Han SL et al (2025) Fusarium and allied genera from cropland in Xizang, China. Fungal Divers 135:1\u201356. https:\/\/doi.org\/10.1007\/s13225-025-00567-w","journal-title":"Fungal Divers"},{"key":"1560_CR87","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/ijms19010270","volume":"19","author":"LS Zhou","year":"2018","unstructured":"Zhou LS, Tang K, Guo SX (2018) The plant growth-promoting fungus (PGPF) Alternaria sp. A13 markedly enhances Salvia miltiorrhiza root growth and active ingredient accumulation under greenhouse and field conditions. Int J Mol Sci 19:1\u201314. https:\/\/doi.org\/10.3390\/ijms19010270","journal-title":"Int J Mol Sci"},{"key":"1560_CR88","doi-asserted-by":"publisher","first-page":"578","DOI":"10.3390\/jof7070578","volume":"7","author":"Y Zuo","year":"2021","unstructured":"Zuo Y, Li X, Yang J et al (2021) Fungal endophytic community and diversity associated with desert shrubs driven by plant identity and organ differentiation in extremely arid desert ecosystem. J Fungi 7:578. https:\/\/doi.org\/10.3390\/jof7070578","journal-title":"J Fungi"}],"container-title":["Folia Microbiologica"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12223-026-01560-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s12223-026-01560-9","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12223-026-01560-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,31]],"date-time":"2026-07-31T18:12:15Z","timestamp":1785521535000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s12223-026-01560-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,29]]},"references-count":88,"alternative-id":["1560"],"URL":"https:\/\/doi.org\/10.1007\/s12223-026-01560-9","relation":{},"ISSN":["0015-5632","1874-9356"],"issn-type":[{"value":"0015-5632","type":"print"},{"value":"1874-9356","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,29]]},"assertion":[{"value":"17 June 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 July 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"This study did not involve human participants, animals, or experiments requiring ethical approval.","order":1,"name":"Ethics","label":"Ethical approval","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Declarations"}}]}}