{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,30]],"date-time":"2026-05-30T02:17:00Z","timestamp":1780107420303,"version":"3.54.0"},"reference-count":79,"publisher":"The Microbiological Society of Korea","issue":"11","license":[{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Microbiol."],"published-print":{"date-parts":[[2024,11]]},"DOI":"10.1007\/s12275-024-00185-2","type":"journal-article","created":{"date-parts":[[2024,11,18]],"date-time":"2024-11-18T18:12:23Z","timestamp":1731953543000},"page":"1035-1055","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Characterization and Comparative Genomic Analysis of vB_BceM_CEP1: A Novel Temperate Bacteriophage Infecting Burkholderia cepacia Complex"],"prefix":"10.71150","volume":"62","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4282-6789","authenticated-orcid":false,"given":"Momen","family":"Askoura","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eslam K.","family":"Fahmy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Safya E.","family":"Esmaeel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wael A. H.","family":"Hegazy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aliaa","family":"Abdelghafar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"4586","published-online":{"date-parts":[[2024,11,18]]},"reference":[{"key":"185_CR1","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2021.109172","volume":"35","author":"AM Al-Anany","year":"2021","unstructured":"Al-Anany, A. M., Fatima, R., & Hynes, A. P. (2021). Temperate phage-antibiotic synergy eradicates bacteria through depletion of lysogens. Cell Reports, 35, 109172.","journal-title":"Cell Reports"},{"key":"185_CR2","doi-asserted-by":"publisher","DOI":"10.1128\/mbio.00504-24","volume":"15","author":"AM Al-Anany","year":"2024","unstructured":"Al-Anany, A. M., Fatima, R., Nair, G., Mayol, J. T., & Hynes, A. P. (2024). Temperate phage-antibiotic synergy across antibiotic classes reveals new mechanism for preventing lysogeny. Mbio, 15, e0050424.","journal-title":"Mbio"},{"key":"185_CR3","doi-asserted-by":"crossref","first-page":"D517","DOI":"10.1093\/nar\/gkz1136","volume":"48","author":"BP Alcock","year":"2020","unstructured":"Alcock, B. P., Raphenya, A. R., Lau, T. T. Y., Tsang, K. K., Bouchard, M., Edalatmand, A., Huynh, W., Nguyen, A. V., Cheng, A. A., Liu, S., et al. (2020). CARD 2020: ANTIBIOTIC resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Research, 48, D517\u2013D525.","journal-title":"Nucleic Acids Research"},{"key":"185_CR4","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1111\/j.1365-2958.2008.06408.x","volume":"70","author":"J Berry","year":"2008","unstructured":"Berry, J., Summer, E. J., Struck, D. K., & Young, R. (2008). The final step in the phage infection cycle: The Rz and Rz1 lysis proteins link the inner and outer membranes. Molecular Microbiology, 70, 341\u2013351.","journal-title":"Molecular Microbiology"},{"key":"185_CR5","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.3243","volume":"5","author":"B Bolduc","year":"2017","unstructured":"Bolduc, B., Jang, H. B., Doulcier, G., You, Z. Q., Roux, S., & Sullivan, M. B. (2017). vConTACT: An iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. PeerJ, 5, e3243.","journal-title":"PeerJ"},{"key":"185_CR6","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/B978-0-12-394621-8.00014-5","volume":"82","author":"EF Boyd","year":"2012","unstructured":"Boyd, E. F. (2012). Bacteriophage-encoded bacterial virulence factors and phage-pathogenicity island interactions. Advances in Virus Research, 82, 91\u2013118.","journal-title":"Advances in Virus Research"},{"key":"185_CR7","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1016\/S0966-842X(02)02459-9","volume":"10","author":"EF Boyd","year":"2002","unstructured":"Boyd, E. F., & Br\u00fcssow, H. (2002). Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved. Trends in Microbiology, 10, 521\u2013529.","journal-title":"Trends in Microbiology"},{"key":"185_CR8","doi-asserted-by":"publisher","first-page":"3137","DOI":"10.1093\/bioinformatics\/btx373","volume":"33","author":"J Brown","year":"2017","unstructured":"Brown, J., Pirrung, M., & McCue, L. A. (2017). FQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics, 33, 3137\u20133139.","journal-title":"Bioinformatics"},{"key":"185_CR9","doi-asserted-by":"publisher","first-page":"3562","DOI":"10.4049\/jimmunol.174.6.3562","volume":"174","author":"J Bylund","year":"2005","unstructured":"Bylund, J., Campsall, P., Ma, R., Conway, B., & Speert, D. (2005). Burkholderia cenocepacia induces neutrophil necrosis in chronic granulomatous disease. The Journal of Immunology, 174, 3562\u20133569.","journal-title":"The Journal of Immunology"},{"key":"185_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-1-4939-9173-0_1","volume":"1962","author":"PP Chan","year":"2019","unstructured":"Chan, P. P., & Lowe, T. M. (2019). tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods in Molecular Biology, 1962, 1\u201314.","journal-title":"Methods in Molecular Biology"},{"key":"185_CR11","doi-asserted-by":"publisher","first-page":"1448","DOI":"10.3390\/pathogens11121448","volume":"11","author":"N Chaudhary","year":"2022","unstructured":"Chaudhary, N., Maurya, R. K., Singh, D., Mohan, B., & Taneja, N. (2022). Genome analysis and antibiofilm activity of phage 590B against multidrug-resistant and extensively drug-resistant uropathogenic Escherichia coli isolates. India. Pathogens, 11, 1448.","journal-title":"India. Pathogens"},{"key":"185_CR12","doi-asserted-by":"publisher","first-page":"D325","DOI":"10.1093\/nar\/gki008","volume":"33","author":"L Chen","year":"2005","unstructured":"Chen, L., Yang, J., Yu, J., Yao, Z., Sun, L., Shen, Y., & Jin, Q. (2005). VFDB: A reference database for bacterial virulence factors. Nucleic Acids Research, 33, D325\u2013D328.","journal-title":"Nucleic Acids Research"},{"key":"185_CR13","doi-asserted-by":"publisher","first-page":"2277","DOI":"10.1007\/s00705-019-04322-w","volume":"164","author":"Y Chen","year":"2019","unstructured":"Chen, Y., Li, X., Song, J., Yang, D., Liu, W., Chen, H., Wu, B., & Qian, P. (2019). Isolation and characterization of a novel temperate bacteriophage from gut-associated Escherichia within black soldier fly larvae. Archives of Virology, 164, 2277\u20132284.","journal-title":"Archives of Virology"},{"key":"185_CR14","doi-asserted-by":"publisher","first-page":"14","DOI":"10.3389\/fcimb.2020.00014","volume":"10","author":"Y Chen","year":"2020","unstructured":"Chen, Y., Yang, L., Yang, D., Song, J., Wang, C., Sun, E., Gu, C., Chen, H., Tong, Y., Tao, P., et al. (2020). Specific integration of temperate phage decreases the pathogenicity of host bacteria. Frontiers in Cellular and Infection Microbiology, 10, 14.","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"185_CR15","doi-asserted-by":"publisher","DOI":"10.1016\/j.foodchem.2020.128562","volume":"345","author":"JH Cho","year":"2021","unstructured":"Cho, J. H., Kwon, J. G., O\u2019Sullivan, D. J., Ryu, S., & Lee, J. H. (2021). Development of an endolysin enzyme and its cell wall-binding domain protein and their applications for biocontrol and rapid detection of Clostridium perfringens in food. Food Chemistry, 345, 128562.","journal-title":"Food Chemistry"},{"key":"185_CR16","doi-asserted-by":"publisher","first-page":"5612","DOI":"10.1128\/AAC.00504-12","volume":"56","author":"IY Chung","year":"2012","unstructured":"Chung, I. Y., Sim, N., & Cho, Y. H. (2012). Antibacterial efficacy of temperate phage-mediated inhibition of bacterial group motilities. Antimicrobial Agents and Chemotherapy, 56, 5612\u20135617.","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"185_CR17","doi-asserted-by":"publisher","first-page":"31","DOI":"10.4161\/bact.1.1.14942","volume":"1","author":"MR Clokie","year":"2011","unstructured":"Clokie, M. R., Millard, A. D., Letarov, A. V., & Heaphy, S. (2011). Phages in Nature. Bacteriophage, 1, 31\u201345.","journal-title":"Phages in Nature. Bacteriophage"},{"key":"185_CR18","doi-asserted-by":"publisher","first-page":"5678","DOI":"10.1128\/JB.184.20.5678-5685.2002","volume":"184","author":"B Conway","year":"2002","unstructured":"Conway, B., Venu, V., & Speert, D. (2002). Biofilm formation and acyl homoserine lactone production in the Burkholderia cepacia complex. Journal of Bacteriology, 184, 5678\u20135685.","journal-title":"Journal of Bacteriology"},{"key":"185_CR19","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1016\/j.jcf.2004.01.005","volume":"3","author":"J Courtney","year":"2004","unstructured":"Courtney, J., Dunbar, K., McDowell, A., Moore, J., Warke, T., Stevenson, M., & Elborn, J. (2004). Clinical outcome of Burkholderia cepacia complex infection in cystic fibrosis adults. Journal of Cystic Fibrosis, 3, 93\u201398.","journal-title":"Journal of Cystic Fibrosis"},{"key":"185_CR20","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0011147","volume":"5","author":"AE Darling","year":"2010","unstructured":"Darling, A. E., Mau, B., & Perna, N. T. (2010). progressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement. PLoS ONE, 5, e11147.","journal-title":"PLoS ONE"},{"key":"185_CR21","doi-asserted-by":"crossref","unstructured":"Davies, E., Winstanley, C., Fothergill, J., & James, C. (2016). The role of temperate bacteriophages in bacterial infection. FEMS Microbiology Letters, 363, fnw015.","DOI":"10.1093\/femsle\/fnw015"},{"key":"185_CR22","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1099\/jmm.0.000229","volume":"65","author":"R Davis","year":"2016","unstructured":"Davis, R., & Brown, P. D. (2016). Multiple antibiotic resistance index, fitness and virulence potential in respiratory Pseudomonas aeruginosa from Jamaica. Journal of Medical Microbiology, 65, 261\u2013271.","journal-title":"Journal of Medical Microbiology"},{"key":"185_CR23","first-page":"D606","volume":"48","author":"JJ Davis","year":"2020","unstructured":"Davis, J. J., Wattam, A. R., Aziz, R. K., Brettin, T., Butler, R., Butler, R. M., Chlenski, P., Conrad, N., Dickerman, A., Dietrich, E. M., et al. (2020). The PATRIC Bioinformatics Resource Center: Expanding data and analysis capabilities. Nucleic Acids Research, 48, D606\u2013D612.","journal-title":"Nucleic Acids Research"},{"key":"185_CR24","doi-asserted-by":"publisher","first-page":"938","DOI":"10.3390\/v14050938","volume":"14","author":"CM Davis","year":"2022","unstructured":"Davis, C. M., Ruest, M. K., Cole, J. H., & Dennis, J. J. (2022). The isolation and characterization of a broad host range Bcep22-like Podovirus JC1. Viruses, 14, 938.","journal-title":"Viruses"},{"key":"185_CR25","doi-asserted-by":"publisher","first-page":"5215","DOI":"10.1007\/s00253-016-7520-x","volume":"100","author":"E Depoorter","year":"2016","unstructured":"Depoorter, E., Bull, M., Peeters, C., Coenye, T., Vandamme, P., & Mahenthiralingam, E. (2016). Burkholderia: An update on taxonomy and biotechnological potential as antibiotic producers. Applied Microbiology and Biotechnology, 100, 5215\u20135229.","journal-title":"Applied Microbiology and Biotechnology"},{"key":"185_CR26","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1093\/jac\/42.2.153","volume":"42","author":"M Desai","year":"1998","unstructured":"Desai, M., B\u00fchler, T., Weller, P. H., & Brown, M. R. (1998). Increasing resistance of planktonic and biofilm cultures of Burkholderia cepacia to ciprofloxacin and ceftazidime during exponential growth. Journal of Antimicrobial Chemotherapy, 42, 153\u2013160.","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"185_CR27","doi-asserted-by":"publisher","first-page":"1327","DOI":"10.1093\/cid\/cix559","volume":"65","author":"G El Chakhtoura","year":"2017","unstructured":"El Chakhtoura, G., Saade, E., Wilson, B., Perez, F., Papp-Wallace, K., & Bonomo, R. (2017). A 17-year nationwide study of Burkholderia cepacia complex bloodstream infections among patients in the United States Veterans Health Administration. Clinical Infectious Diseases, 65, 1327\u20131334.","journal-title":"Clinical Infectious Diseases"},{"key":"185_CR28","first-page":"47","volume":"3","author":"S Eram","year":"2004","unstructured":"Eram, S., Behzadian Nejad, Q., Khatami, G., & Nafissi, N. (2004). Detection of Burkholderia cepacia complex in patients with cystic fibrosis. Tanaffos Tanaffos, 3, 47\u201352.","journal-title":"Tanaffos Tanaffos"},{"key":"185_CR29","doi-asserted-by":"publisher","first-page":"1804","DOI":"10.3390\/v7041804","volume":"7","author":"H Eriksson","year":"2015","unstructured":"Eriksson, H., Maciejewska, B., Latka, A., Majkowska-Skrobek, G., Hellstrand, M., Melefors, \u00d6., Wang, J.-T., Kropinski, A. M., Drulis-Kawa, Z., & Nilsson, A. S. (2015). A suggested new bacteriophage genus, \u201cKp34likevirus\u201d, within the Autographivirinae subfamily of Podoviridae. Viruses, 7, 1804\u20131822.","journal-title":"Viruses"},{"key":"185_CR30","doi-asserted-by":"publisher","first-page":"e00066","DOI":"10.1128\/CMR.00066-18","volume":"32","author":"FL Gordillo Altamirano","year":"2019","unstructured":"Gordillo Altamirano, F. L., & Barr, J. J. (2019). Phage therapy in the postantibiotic era. Clinical Microbiology Reviews, 32, e00066-e118.","journal-title":"Clinical Microbiology Reviews"},{"key":"185_CR31","doi-asserted-by":"publisher","first-page":"667","DOI":"10.1016\/j.jmb.2003.09.082","volume":"335","author":"AC Groth","year":"2004","unstructured":"Groth, A. C., & Calos, M. P. (2004). Phage integrases: Biology and applications. Journal of Molecular Biology, 335, 667\u2013678.","journal-title":"Journal of Molecular Biology"},{"key":"185_CR32","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","volume":"29","author":"A Gurevich","year":"2013","unstructured":"Gurevich, A., & Saveliev, V. (2013). QUAST: Quality assessment tool for genome assemblies. Bioinformatics, 29, 1072\u20131075.","journal-title":"Bioinformatics"},{"key":"185_CR33","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1016\/j.ijantimicag.2007.04.006","volume":"30","author":"GW Hanlon","year":"2007","unstructured":"Hanlon, G. W. (2007). Bacteriophages: An appraisal of their role in the treatment of bacterial infections. International Journal of Antimicrobial Agents, 30, 118\u2013128.","journal-title":"International Journal of Antimicrobial Agents"},{"key":"185_CR34","doi-asserted-by":"publisher","first-page":"e01934","DOI":"10.1128\/JCM.01934-17","volume":"56","author":"RM Humphries","year":"2018","unstructured":"Humphries, R. M., Ambler, J., Mitchell, S. L., Castanheira, M., Dingle, T., Hindler, J. A., Koeth, L., & Sei, K. (2018). CLSI methods development and standardization working group best practices for evaluation of antimicrobial susceptibility tests. Journal of Clinical Microbiology, 56, e01934-e11917.","journal-title":"Journal of Clinical Microbiology"},{"key":"185_CR35","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1007\/978-1-60327-164-6_18","volume":"501","author":"P Hyman","year":"2009","unstructured":"Hyman, P., & Abedon, S. T. (2009). Practical methods for determining phage growth parameters. Methods in Molecular Biology, 501, 175\u2013202.","journal-title":"Methods in Molecular Biology"},{"key":"185_CR36","doi-asserted-by":"publisher","first-page":"34338","DOI":"10.1038\/srep34338","volume":"6","author":"A Jurczak-Kurek","year":"2016","unstructured":"Jurczak-Kurek, A., Gasior, T., Nejman-Falenczyk, B., Bloch, S., Dydecka, A., Topka, G., Necel, A., Jakubowska-Deredas, M., Narajczyk, M., Richert, M., et al. (2016). Biodiversity of bacteriophages: Morphological and biological properties of a large group of phages isolated from urban sewage. Scientific Reports, 6, 34338.","journal-title":"Scientific Reports"},{"key":"185_CR37","doi-asserted-by":"publisher","first-page":"e01129","DOI":"10.1128\/JCM.01129-19","volume":"57","author":"G Kahlmeter","year":"2019","unstructured":"Kahlmeter, G., Giske, C. G., Kirn, T. J., & Sharp, S. E. (2019). Point-counterpoint: Differences between the European Committee on antimicrobial susceptibility testing and Clinical and Laboratory Standards Institute Recommendations for reporting antimicrobial susceptibility results. Journal of Clinical Microbiology, 57, e01129-e1219.","journal-title":"Journal of Clinical Microbiology"},{"key":"185_CR38","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0118557","volume":"10","author":"M Khan Mirzaei","year":"2015","unstructured":"Khan Mirzaei, M., & Nilsson, A. S. (2015). Isolation of phages for phage therapy: A comparison of spot tests and efficiency of plating analyses for determination of host range and efficacy. PLoS ONE, 10, e0118557.","journal-title":"PLoS ONE"},{"key":"185_CR39","doi-asserted-by":"publisher","first-page":"2775","DOI":"10.1111\/j.1462-2920.2009.01970.x","volume":"11","author":"AM Kropinski","year":"2009","unstructured":"Kropinski, A. M., Prangishvili, D., & Lavigne, R. (2009). Position paper: The creation of a rational scheme for the nomenclature of viruses of Bacteria and Archaea. Environmental Microbiology, 11, 2775\u20132777.","journal-title":"Environmental Microbiology"},{"key":"185_CR40","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1093\/bioinformatics\/btm039","volume":"23","author":"J Krumsiek","year":"2007","unstructured":"Krumsiek, J., Arnold, R., & Rattei, T. (2007). Gepard: A rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics, 23, 1026\u20131028.","journal-title":"Bioinformatics"},{"key":"185_CR41","first-page":"1344","volume":"45","author":"R Kulsuwan","year":"2014","unstructured":"Kulsuwan, R., Wongratanacheewin, S., Wongratanacheewin, R. S., Yordpratum, U., & Tattawasart, U. (2014). Lytic capability of bacteriophages (Family Myoviridae) on Burkholderia pseudomallei. Southeast Asian Journal of Tropical Medicine Public Health, 45, 1344\u20131353.","journal-title":"Southeast Asian Journal of Tropical Medicine Public Health"},{"key":"185_CR42","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1007\/978-1-60327-164-6_14","volume":"501","author":"E Kutter","year":"2009","unstructured":"Kutter, E. (2009). Phage host range and efficiency of plating. Methods in Molecular Biology, 501, 141\u2013149.","journal-title":"Methods in Molecular Biology"},{"key":"185_CR43","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1016\/j.resmic.2016.10.009","volume":"168","author":"M Kwiatek","year":"2017","unstructured":"Kwiatek, M., Parasion, S., Rutyna, P., Mizak, L., Gryko, R., Niemcewicz, M., Olender, A., & \u0141obocka, M. (2017). Isolation of bacteriophages and their application to control Pseudomonas aeruginosa in planktonic and biofilm models. Research in Microbiology, 168, 194\u2013207.","journal-title":"Research in Microbiology"},{"key":"185_CR44","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1099\/jmm.0.05099-0","volume":"52","author":"R Langley","year":"2003","unstructured":"Langley, R., Kenna, D. T., Vandamme, P., Ure, R., & Govan, J. R. W. (2003). Lysogeny and bacteriophage host range within the Burkholderia cepacia complex. Journal of Medical Microbiology, 52, 483\u2013490.","journal-title":"Journal of Medical Microbiology"},{"key":"185_CR45","doi-asserted-by":"publisher","first-page":"1331","DOI":"10.3390\/v13071331","volume":"13","author":"P Lauman","year":"2021","unstructured":"Lauman, P., & Dennis, J. (2021). Advances in phage therapy: Targeting the Burkholderia cepacia complex. Viruses, 13, 1331.","journal-title":"Viruses"},{"key":"185_CR46","doi-asserted-by":"publisher","first-page":"671","DOI":"10.1142\/S0192415X05003260","volume":"33","author":"YQ Liu","year":"2005","unstructured":"Liu, Y. Q., Zhang, Y. Z., Sun, C. Y., & Gao, P. J. (2005). A novel approach to estimate in vitro antibacterial potency of Chinese medicine using a concentration-killing curve method. The American Journal of Chinese Medicine, 33, 671\u2013682.","journal-title":"The American Journal of Chinese Medicine"},{"key":"185_CR47","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1139\/w11-135","volume":"58","author":"K Lynch","year":"2012","unstructured":"Lynch, K., & Dennis, J. (2012). Cangene gold medal award lecture - Genomic analysis and modification of Burkholderia cepacia complex bacteriophages. Canadian Journal of Microbiology, 58, 221\u2013235.","journal-title":"Canadian Journal of Microbiology"},{"key":"185_CR48","doi-asserted-by":"publisher","first-page":"1276","DOI":"10.1128\/JVI.01843-09","volume":"84","author":"K Lynch","year":"2010","unstructured":"Lynch, K., Seed, K., Stothard, P., & Dennis, J. (2010). Inactivation of Burkholderia cepacia complex phage KS9 gp41 identifies the phage repressor and generates lytic virions. Journal of Virology, 84, 1276\u20131288.","journal-title":"Journal of Virology"},{"key":"185_CR49","doi-asserted-by":"publisher","first-page":"574","DOI":"10.1186\/1471-2164-14-574","volume":"14","author":"KH Lynch","year":"2013","unstructured":"Lynch, K. H., Abdu, A. H., Schobert, M., & Dennis, J. J. (2013). Genomic characterization of JG068, a novel virulent podovirus active against Burkholderia cenocepacia. BMC Genomics, 14, 574.","journal-title":"BMC Genomics"},{"key":"185_CR50","doi-asserted-by":"publisher","first-page":"664","DOI":"10.1186\/s12864-015-1848-y","volume":"16","author":"K Lynch","year":"2015","unstructured":"Lynch, K., Peters, D. L., Stothard, P., & Dennis, J. J. (2015). The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity. BMC Genomics, 16, 664.","journal-title":"BMC Genomics"},{"key":"185_CR51","doi-asserted-by":"publisher","first-page":"268","DOI":"10.1111\/j.1469-0691.2011.03570.x","volume":"18","author":"AP Magiorakos","year":"2012","unstructured":"Magiorakos, A. P., Srinivasan, A., Carey, R. B., Carmeli, Y., Falagas, M. E., Giske, C. G., Harbarth, S., Hindler, J. F., Kahlmeter, G., & Olsson-Liljequist, B. (2012). Multidrug-resistant, extensively drug-resistant and pandrug- resistant bacteria: An international expert proposal for interim standard definitions for acquired resistance. Clinical Microbiology and Infection, 18, 268\u2013281.","journal-title":"Clinical Microbiology and Infection"},{"key":"185_CR52","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1038\/nrmicro1085","volume":"3","author":"E Mahenthiralingam","year":"2005","unstructured":"Mahenthiralingam, E., Urban, T., & Goldberg, J. (2005). The multifarious, multireplicon Burkholderia cepacia complex. Nature Reviews Microbiology, 3, 144\u2013156.","journal-title":"Nature Reviews Microbiology"},{"key":"185_CR53","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1016\/j.ijfoodmicro.2017.11.009","volume":"2","author":"M Mahmoud","year":"2018","unstructured":"Mahmoud, M., Askora, A., Barakat, A. B., Rabie, O. E., & Hassan, S. E. (2018). Isolation and characterization of polyvalent bacteriophages infecting multi drug resistant Salmonella serovars isolated from broilers in Egypt. International Journal of Food Microbiology, 2, 8\u201313.","journal-title":"International Journal of Food Microbiology"},{"key":"185_CR54","doi-asserted-by":"publisher","DOI":"10.1016\/j.genrep.2023.101792","volume":"32","author":"S Makky","year":"2023","unstructured":"Makky, S., Abdelsattar, A. S., Habashy, M., Dawoud, A., Nofal, R., Hassan, A., Connerton, I. F., & El-Shibiny, A. (2023). Phage ZCSS1 from isolation to application against Staphylococcus sciuri and biofilm: A prospect of utilizing temperate phage and its products. Gene Reports, 32, 101792.","journal-title":"Gene Reports"},{"key":"185_CR55","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1186\/s12866-022-02738-0","volume":"23","author":"AG Mankovich","year":"2023","unstructured":"Mankovich, A. G., Maciel, K., Kavanaugh, M., Kistler, E., Muckle, E., & Weingart, C. L. (2023). Phage-antibiotic synergy reduces Burkholderia cenocepacia population. BMC Microbiology, 23, 2.","journal-title":"BMC Microbiology"},{"key":"185_CR56","doi-asserted-by":"publisher","first-page":"614","DOI":"10.1093\/bioinformatics\/bts014","volume":"28","author":"K McNair","year":"2012","unstructured":"McNair, K., Bailey, B. A., & Edwards, R. A. (2012). PHACTS, a computational approach to classifying the lifestyle of phages. Bioinformatics, 28, 614\u2013618.","journal-title":"Bioinformatics"},{"key":"185_CR57","doi-asserted-by":"publisher","first-page":"3396","DOI":"10.1093\/bioinformatics\/btx440","volume":"33","author":"JP Meier-Kolthoff","year":"2017","unstructured":"Meier-Kolthoff, J. P., & G\u00f6ker, M. (2017). VICTOR: Genome-based phylogeny and classification of prokaryotic viruses. Bioinformatics, 33, 3396\u20133404.","journal-title":"Bioinformatics"},{"key":"185_CR58","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1016\/j.tim.2018.10.008","volume":"27","author":"R Monteiro","year":"2019","unstructured":"Monteiro, R., Pires, D. P., Costa, A. R., & Azeredo, J. (2019). Phage Therapy: Going Temperate? Trends Microbiology, 27, 368\u2013378.","journal-title":"Trends Microbiology"},{"key":"185_CR59","doi-asserted-by":"publisher","first-page":"1268","DOI":"10.3390\/v12111268","volume":"12","author":"C Moraru","year":"2020","unstructured":"Moraru, C., Varsani, A., & Kropinski, A. M. (2020). VIRIDIC: A novel tool to calculate the intergenomic similarities of prokaryote-infecting viruses. Viruses, 12, 1268.","journal-title":"Viruses"},{"key":"185_CR60","doi-asserted-by":"publisher","first-page":"2379","DOI":"10.1093\/bioinformatics\/btx157","volume":"33","author":"Y Nishimura","year":"2017","unstructured":"Nishimura, Y., Yoshida, T., Kuronishi, M., Uehara, H., Ogata, H., & Goto, S. (2017). ViPTree: The viral proteomic tree server. Bioinformatics, 33, 2379\u20132380.","journal-title":"Bioinformatics"},{"key":"185_CR61","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1016\/j.tim.2015.01.006","volume":"23","author":"F Nobrega","year":"2015","unstructured":"Nobrega, F., Costa, A., Kluskens, L., & Azeredo, J. (2015). Revisiting phage therapy: New applications for old resources. Trends Microbiology, 23, 185\u2013191.","journal-title":"Trends Microbiology"},{"key":"185_CR62","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1016\/j.ajme.2014.08.005","volume":"51","author":"N Omar","year":"2015","unstructured":"Omar, N., Raouf, H., Okasha, H., & Nabil, N. (2015). Microbiological assessment of Burkholderia cepacia complex (Bcc) isolates in Alexandria Main University Hospital. Alexandria Journal of Medicine, 51, 41\u201346.","journal-title":"Alexandria Journal of Medicine"},{"key":"185_CR63","doi-asserted-by":"publisher","first-page":"44929","DOI":"10.1038\/srep44929","volume":"7","author":"JY Park","year":"2017","unstructured":"Park, J. Y., Moon, B. Y., Park, J. W., Thornton, J. A., Park, Y. H., & Seo, K. S. (2017). Genetic engineering of a temperate phage-based delivery system for CRISPR\/Cas9 antimicrobials against Staphylococcus aureus. Scientific Reports, 7, 44929.","journal-title":"Scientific Reports"},{"key":"185_CR64","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1089\/phage.2021.0008","volume":"2","author":"G Rangel-Pineros","year":"2021","unstructured":"Rangel-Pineros, G., Millard, A., Michniewski, S., Scanlan, D., Sir\u00e9n, K., Reyes, A., Petersen, B., Clokie, M. R. J., & Sicheritz-Pont\u00e9n, T. (2021). From Trees to Clouds: PhageClouds for Fast Comparison of \u223c640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs. Phage, 2, 194\u2013203.","journal-title":"Phage"},{"key":"185_CR65","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1007\/s11262-020-01735-7","volume":"56","author":"M Reuter","year":"2020","unstructured":"Reuter, M., & Kruger, D. (2020). Approaches to optimize therapeutic bacteriophage and bacteriophage-derived products to combat bacterial infections. Virus Genes, 56, 136\u2013149.","journal-title":"Virus Genes"},{"key":"185_CR66","doi-asserted-by":"publisher","first-page":"929","DOI":"10.1093\/bioinformatics\/btv681","volume":"32","author":"M Richter","year":"2016","unstructured":"Richter, M., Rossell\u00f3-M\u00f3ra, R., Oliver Gl\u00f6ckner, F., & Peplies, J. (2016). a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics, 32, 929\u2013931.","journal-title":"Bioinformatics"},{"key":"185_CR67","doi-asserted-by":"publisher","first-page":"1203","DOI":"10.1007\/s00253-016-7924-7","volume":"101","author":"B Roszniowski","year":"2017","unstructured":"Roszniowski, B., Latka, A., Maciejewska, B., Vandenheuvel, D., Olszak, T., Briers, Y., Holt, G. S., Valvano, M. A., Lavigne, R., Smith, D. L., et al. (2017). The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage. Applied Microbiology and Biotechnology, 101, 1203\u20131216.","journal-title":"Applied Microbiology and Biotechnology"},{"key":"185_CR68","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1186\/s12879-024-09152-z","volume":"24","author":"TS Sada","year":"2024","unstructured":"Sada, T. S., & Tessema, T. S. (2024). Isolation and characterization of lytic bacteriophages from various sources in Addis Ababa against antimicrobial-resistant diarrheagenic Escherichia coli strains and evaluation of their therapeutic potential. BMC Infectious Diseases, 24, 310.","journal-title":"BMC Infectious Diseases"},{"key":"185_CR69","doi-asserted-by":"publisher","first-page":"1147","DOI":"10.2217\/fmb.12.97","volume":"7","author":"M Schmelcher","year":"2012","unstructured":"Schmelcher, M., Donovan, D. M., & Loessner, M. J. (2012). Bacteriophage endolysins as novel antimicrobials. Future Microbiology, 7, 1147\u20131171.","journal-title":"Future Microbiology"},{"key":"185_CR70","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1016\/j.femsle.2005.08.011","volume":"251","author":"KD Seed","year":"2005","unstructured":"Seed, K. D., & Dennis, J. J. (2005). Isolation and characterization of bacteriophages of the Burkholderia cepacia complex. FEMS Microbiology Letters, 251, 273\u2013280.","journal-title":"FEMS Microbiology Letters"},{"key":"185_CR71","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","volume":"30","author":"T Seemann","year":"2014","unstructured":"Seemann, T. (2014). Prokka: Rapid prokaryotic genome annotation. Bioinformatics, 30, 2068\u20132069.","journal-title":"Bioinformatics"},{"key":"185_CR72","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003). Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research, 13, 2498\u20132504.","journal-title":"Genome Research"},{"key":"185_CR73","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1007\/s12223-016-0471-x","volume":"62","author":"S Sharma","year":"2017","unstructured":"Sharma, S., Chatterjee, S., Datta, S., Prasad, R., Dubey, D., Prasad, R. K., & Vairale, M. G. (2017). Bacteriophages and its applications: An overview. Folia Microbiologica, 62, 17\u201355.","journal-title":"Folia Microbiologica"},{"key":"185_CR74","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1046\/j.1365-2958.2002.02891.x","volume":"44","author":"MC Smith","year":"2002","unstructured":"Smith, M. C., & Thorpe, H. M. (2002). Diversity in the serine recombinases. Molecular Microbiology, 44, 299\u2013307.","journal-title":"Molecular Microbiology"},{"key":"185_CR75","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1093\/bioinformatics\/bti054","volume":"21","author":"P Stothard","year":"2005","unstructured":"Stothard, P., & Wishart, D. S. (2005). Circular genome visualization and exploration using CGView. Bioinformatics, 21, 537\u2013539.","journal-title":"Bioinformatics"},{"key":"185_CR76","doi-asserted-by":"publisher","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","volume":"27","author":"MJ Sullivan","year":"2011","unstructured":"Sullivan, M. J., Petty, N. K., & Beatson, S. A. (2011). Easyfig: A genome comparison visualizer. Bioinformatics, 27, 1009\u20131010.","journal-title":"Bioinformatics"},{"key":"185_CR77","doi-asserted-by":"publisher","first-page":"3022","DOI":"10.1093\/molbev\/msab120","volume":"38","author":"K Tamura","year":"2021","unstructured":"Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution, 38, 3022\u20133027.","journal-title":"Molecular Biology and Evolution"},{"key":"185_CR78","first-page":"327","volume":"58","author":"J Ugorakova","year":"2003","unstructured":"Ugorakova, J., & Bukovska, G. (2003). Lysins and holins: Tools of phage-induced lysis. Biologia, 58, 327\u2013334.","journal-title":"Biologia"},{"key":"185_CR79","doi-asserted-by":"publisher","first-page":"1191","DOI":"10.1046\/j.1365-2672.2003.02054.x","volume":"95","author":"K Vermis","year":"2003","unstructured":"Vermis, K., Vandamme, P., & Nelis, H. (2003). Burkholderia cepacia complex genomovars: Utilization of carbon sources, susceptibility to antimicrobial agents and growth on selective media. Journal of Applied Microbiology, 95, 1191\u20131199.","journal-title":"Journal of Applied Microbiology"}],"container-title":["Journal of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12275-024-00185-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s12275-024-00185-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12275-024-00185-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,12,24]],"date-time":"2024-12-24T17:46:48Z","timestamp":1735062408000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s12275-024-00185-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,11]]},"references-count":79,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2024,11]]}},"alternative-id":["185"],"URL":"https:\/\/doi.org\/10.1007\/s12275-024-00185-2","relation":{},"ISSN":["1225-8873","1976-3794"],"issn-type":[{"value":"1225-8873","type":"print"},{"value":"1976-3794","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,11]]},"assertion":[{"value":"4 July 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 October 2024","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 October 2024","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 November 2024","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no conflicts of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}