{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,12]],"date-time":"2026-10-12T22:22:46Z","timestamp":1791843766408,"version":"4.3.4"},"reference-count":272,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T00:00:00Z","timestamp":1761523200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T00:00:00Z","timestamp":1761523200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Probiotics &amp; Antimicro. Prot."],"published-print":{"date-parts":[[2026,4]]},"DOI":"10.1007\/s12602-025-10755-4","type":"journal-article","created":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T09:14:48Z","timestamp":1761556488000},"page":"3867-3892","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Mechanisms, Modulation, and Mitigation: Dietary-Gut Microbiome Strategies Against Antibiotic Resistance"],"prefix":"10.1007","volume":"18","author":[{"given":"Mohammad","family":"Abavisani","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Niloofar","family":"Khoshroo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pourya","family":"Tafti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sobhan","family":"Karbas Foroushan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Negar","family":"Ebadpour","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sercan","family":"Karav","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Prashant","family":"Kesharwani","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amirhossein","family":"Sahebkar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,10,27]]},"reference":[{"issue":"10325","key":"10755_CR1","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1016\/S0140-6736(21)02724-0","volume":"399","author":"AR Collaborators","year":"2022","unstructured":"Collaborators AR (2022) Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet 399(10325):629\u2013655","journal-title":"Lancet"},{"key":"10755_CR2","unstructured":"O\u2019neill J (2014) Antimicrobial resistance: tackling a crisis for the health and wealth of nations. Rev Antimicrob Resist. London, UK"},{"issue":"7","key":"10755_CR3","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pmed.1004264","volume":"20","author":"TR Walsh","year":"2023","unstructured":"Walsh TR, Gales AC, Laxminarayan R, Dodd PC (2023) Antimicrobial resistance: addressing a global threat to humanity. PLoS Med 20(7):e1004264","journal-title":"PLoS Med"},{"issue":"7","key":"10755_CR4","doi-asserted-by":"publisher","first-page":"441","DOI":"10.1038\/s41579-019-0196-3","volume":"17","author":"NQ Balaban","year":"2019","unstructured":"Balaban NQ, Helaine S, Lewis K, Ackermann M, Aldridge B, Andersson DI et al (2019) Definitions and guidelines for research on antibiotic persistence. Nat Rev Microbiol 17(7):441\u2013448","journal-title":"Nat Rev Microbiol"},{"key":"10755_CR5","doi-asserted-by":"publisher","DOI":"10.1016\/j.drup.2023.100948","volume":"68","author":"M Abavisani","year":"2023","unstructured":"Abavisani M, Khayami R, Hoseinzadeh M, Kodori M, Kesharwani P, Sahebkar A (2023) CRISPR-cas system as a promising player against bacterial infection and antibiotic resistance. Drug Resist Updat 68:100948","journal-title":"Drug Resist Updat"},{"issue":"9","key":"10755_CR6","doi-asserted-by":"publisher","first-page":"1337","DOI":"10.1038\/s41564-022-01184-y","volume":"7","author":"MJ Carvalho","year":"2022","unstructured":"Carvalho MJ, Sands K, Thomson K, Portal E, Mathias J, Milton R et al (2022) Antibiotic resistance genes in the gut microbiota of mothers and linked neonates with or without sepsis from low- and middle-income countries. Nat Microbiol 7(9):1337\u20131347","journal-title":"Nat Microbiol"},{"issue":"1","key":"10755_CR7","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-022-05817-4","volume":"12","author":"PB Stege","year":"2022","unstructured":"Stege PB, Hordijk J, Shetty SA, Visser M, Viveen MC, Rogers MRC et al (2022) Impact of long-term dietary habits on the human gut resistome in the Dutch population. Sci Rep 12(1):1892","journal-title":"Sci Rep"},{"key":"10755_CR8","doi-asserted-by":"publisher","DOI":"10.3389\/frmbi.2024.1359580","volume":"3","author":"D John","year":"2024","unstructured":"John D, Michael D, Dabcheva M, Hulme E, Illanes J, Webberley T et al (2024) A double-blind, randomized, placebo-controlled study assessing the impact of probiotic supplementation on antibiotic induced changes in the gut microbiome. Front Microbiomes 3:1359580","journal-title":"Front Microbiomes"},{"issue":"4","key":"10755_CR9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0154012","volume":"11","author":"K Korpela","year":"2016","unstructured":"Korpela K, Salonen A, Virta LJ, Kumpu M, Kekkonen RA, de Vos WM (2016) Lactobacillus rhamnosus GG intake modifies preschool children\u2019s intestinal microbiota, alleviates penicillin-associated changes, and reduces antibiotic use. PLoS ONE 11(4):e0154012","journal-title":"PLoS ONE"},{"key":"10755_CR10","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2022.879495","author":"M Arip","year":"2022","unstructured":"Arip M, Selvaraja M, R M, Tan LF, Leong MY, Tan PL et al (2022) Review on plant-based management in combating antimicrobial resistance - mechanistic perspective. Front Pharmacol. https:\/\/doi.org\/10.3389\/fphar.2022.879495","journal-title":"Front Pharmacol"},{"key":"10755_CR11","doi-asserted-by":"publisher","DOI":"10.1016\/j.biotechadv.2025.108621","volume":"83","author":"M Abavisani","year":"2025","unstructured":"Abavisani M, Fazeli E, Ebadpour N, Karav S, Kesharwani P, Sahebkar A (2025) The road less traveled: unexplored targets in the quest for antibiotics against Pseudomonas aeruginosa. Biotechnol Adv 83:108621","journal-title":"Biotechnol Adv"},{"key":"10755_CR12","unstructured":"McDermott E (2019) The threat of antibiotic resistance on global health Doctoral dissertation, University of Prince Edward Island"},{"key":"10755_CR13","doi-asserted-by":"publisher","first-page":"3903","DOI":"10.2147\/IDR.S234610","volume":"12","author":"P Dadgostar","year":"2019","unstructured":"Dadgostar P (2019) Antimicrobial resistance: implications and costs. Infect Drug Resist 12:3903\u20133910","journal-title":"Infect Drug Resist"},{"key":"10755_CR14","doi-asserted-by":"publisher","DOI":"10.3389\/bjbs.2023.11387","volume":"80","author":"KWK Tang","year":"2023","unstructured":"Tang KWK, Millar BC, Moore JE (2023) Antimicrobial resistance (AMR). Br J Biomed Sci 80:11387","journal-title":"Br J Biomed Sci"},{"issue":"10","key":"10755_CR15","doi-asserted-by":"publisher","first-page":"1309","DOI":"10.1080\/14787210.2022.2122442","volume":"20","author":"S Mitra","year":"2022","unstructured":"Mitra S, Sultana SA, Prova SR, Uddin TM, Islam F, Das R et al (2022) Investigating forthcoming strategies to tackle deadly superbugs: current status and future vision. Expert Rev Anti-infect Ther 20(10):1309\u20131332","journal-title":"Expert Rev Anti-infect Ther"},{"key":"10755_CR16","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2024.1352273","volume":"14","author":"KE Grooters","year":"2024","unstructured":"Grooters KE, Ku JC, Richter DM, Krinock MJ, Minor A, Li P et al (2024) Strategies for combating antibiotic resistance in bacterial biofilms. Front Cell Infect Microbiol 14:1352273","journal-title":"Front Cell Infect Microbiol"},{"key":"10755_CR17","doi-asserted-by":"publisher","DOI":"10.3201\/eid2106.150212","author":"JA Poupard","year":"2015","unstructured":"Poupard JA (2015) The antibiotic era: reform, resistance, and the pursuit of a rational therapeutics. Emerg Infect Dis. https:\/\/doi.org\/10.3201\/eid2106.150212","journal-title":"Emerg Infect Dis"},{"issue":"1","key":"10755_CR18","first-page":"3916980","volume":"2022","author":"M Abavisani","year":"2022","unstructured":"Abavisani M, Kodori M, Akrami F, Radfar A, Hashemi A (2022) Relationships between efflux pumps and emergence of heteroresistance: a comprehensive study on the current findings. Canadian Journal of Infectious Diseases and Medical Microbiology 2022(1):3916980","journal-title":"Canadian Journal of Infectious Diseases and Medical Microbiology"},{"key":"10755_CR19","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2022.900848","volume":"12","author":"W Eisenreich","year":"2022","unstructured":"Eisenreich W, Rudel T, Heesemann J, Goebel W (2022) Link between antibiotic persistence and antibiotic resistance in bacterial pathogens. Front Cell Infect Microbiol 12:900848","journal-title":"Front Cell Infect Microbiol"},{"issue":"5","key":"10755_CR20","doi-asserted-by":"publisher","first-page":"280","DOI":"10.1038\/s41579-022-00820-y","volume":"21","author":"EM Darby","year":"2023","unstructured":"Darby EM, Trampari E, Siasat P, Gaya MS, Alav I, Webber MA et al (2023) Molecular mechanisms of antibiotic resistance revisited. Nat Rev Microbiol 21(5):280\u2013295","journal-title":"Nat Rev Microbiol"},{"key":"10755_CR21","doi-asserted-by":"publisher","DOI":"10.1016\/j.seppur.2021.119185","volume":"275","author":"R Song","year":"2021","unstructured":"Song R, Li H, Kang Z, Zhong R, Wang Y, Zhang Y et al (2021) Surface plasma induced elimination of antibiotic-resistant Escherichia coli and resistance genes: antibiotic resistance, horizontal gene transfer, and mechanisms. Sep Purif Technol 275:119185","journal-title":"Sep Purif Technol"},{"key":"10755_CR22","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2020.00054","volume":"10","author":"M Mishra","year":"2020","unstructured":"Mishra M, Panda S, Barik S, Sarkar A, Singh DV, Mohapatra H (2020) Antibiotic resistance profile, outer membrane proteins, virulence factors and genome sequence analysis reveal clinical isolates of Enterobacter are potential pathogens compared to environmental isolates. Front Cell Infect Microbiol 10:54","journal-title":"Front Cell Infect Microbiol"},{"issue":"17","key":"10755_CR23","doi-asserted-by":"publisher","DOI":"10.3390\/ijerph17176278","volume":"17","author":"G Wang","year":"2020","unstructured":"Wang G, Zhao G, Chao X, Xie L, Wang H (2020) The characteristic of virulence, biofilm and antibiotic resistance of Klebsiella pneumoniae. Int J Environ Res Public Health 17(17):6278","journal-title":"Int J Environ Res Public Health"},{"issue":"7","key":"10755_CR24","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11071690","volume":"11","author":"G Zhou","year":"2023","unstructured":"Zhou G, Wang Q, Wang Y, Wen X, Peng H, Peng R et al (2023) Outer membrane porins contribute to antimicrobial resistance in gram-negative bacteria. Microorganisms 11(7):1690","journal-title":"Microorganisms"},{"key":"10755_CR25","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.micpath.2017.02.033","volume":"107","author":"HM Hejair","year":"2017","unstructured":"Hejair HM, Zhu Y, Ma J, Zhang Y, Pan Z, Zhang W et al (2017) Functional role of ompF and ompC porins in pathogenesis of avian pathogenic Escherichia coli. Microb Pathog 107:29\u201337","journal-title":"Microb Pathog"},{"key":"10755_CR26","doi-asserted-by":"crossref","unstructured":"Wang J, Ma W, Fang Y, Liang H, Yang H, Wang Y et al (2021) Core oligosaccharide portion of lipopolysaccharide plays important roles in multiple antibiotic resistance in Escherichia coli. Antimicrob Agents Chemother. https:\/\/doi.org\/10.1128\/aac.00341\u201321","DOI":"10.1128\/AAC.00341-21"},{"issue":"8","key":"10755_CR27","doi-asserted-by":"publisher","first-page":"181","DOI":"10.3390\/membranes10080181","volume":"10","author":"MC Ayoub","year":"2020","unstructured":"Ayoub MC (2020) Polymyxins and bacterial membranes: a review of antibacterial activity and mechanisms of resistance. Membranes 10(8):181","journal-title":"Membranes"},{"issue":"12","key":"10755_CR28","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbamem.2019.183060","volume":"1861","author":"A Mangiarotti","year":"2019","unstructured":"Mangiarotti A, Genovese DM, Naumann CA, Monti MR, Wilke N (2019) Hopanoids, like sterols, modulate dynamics, compaction, phase segregation and permeability of membranes. Biochimica et Biophysica Acta (BBA)-Biomembranes 1861(12):183060","journal-title":"Biochimica et Biophysica Acta (BBA)-Biomembranes"},{"issue":"11","key":"10755_CR29","doi-asserted-by":"publisher","DOI":"10.3390\/ijms25116210","volume":"25","author":"ES Peregrino","year":"2024","unstructured":"Peregrino ES, Casta\u00f1eda-Casimiro J, V\u00e1zquez-Flores L, Estrada-Parra S, Wong-Baeza C, Seraf\u00edn-L\u00f3pez J et al (2024) The role of bacterial extracellular vesicles in the immune response to pathogens, and therapeutic opportunities. Int J Mol Sci 25(11):6210","journal-title":"Int J Mol Sci"},{"key":"10755_CR30","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.PSIB-0001-2018","author":"J Cecil","year":"2019","unstructured":"Cecil J, Sirisaengtaksin N, O\u2019Brien-Simpson N, Krachler A (2019) Outer membrane vesicle-host cell interactions. Microbiol Spectr. https:\/\/doi.org\/10.1128\/microbiolspec.PSIB-0001-2018","journal-title":"Microbiol Spectr"},{"key":"10755_CR31","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-micro-052821-031444","author":"M Sartorio","year":"2021","unstructured":"Sartorio M, Pardue E, Feldman M, Haurat M (2021) Bacterial outer membrane vesicles: from discovery to applications. Annu Rev Microbiol. https:\/\/doi.org\/10.1146\/annurev-micro-052821-031444","journal-title":"Annu Rev Microbiol"},{"key":"10755_CR32","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s43440-020-00160-9","volume":"73","author":"M AlMatar","year":"2021","unstructured":"AlMatar M, Albarri O, Makky EA, K\u00f6ksal F (2021) Efflux pump inhibitors: new updates. Pharmacol Rep 73:1\u201316","journal-title":"Pharmacol Rep"},{"key":"10755_CR33","first-page":"131","volume":"10","author":"I Ranaweera","year":"2015","unstructured":"Ranaweera I, Shrestha U, Ranjana K, Kakarla P, Willmon TM, Hernandez AJ et al (2015) Structural comparison of bacterial multidrug efflux pumps of the major facilitator superfamily. Trends Cell Mol Biol 10:131","journal-title":"Trends Cell Mol Biol"},{"key":"10755_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12866-016-0649-z","volume":"16","author":"TS M\u00f8ller","year":"2016","unstructured":"M\u00f8ller TS, Overgaard M, Nielsen SS, Bortolaia V, Sommer MO, Guardabassi L et al (2016) Relation between tetR and tetA expression in tetracycline resistant Escherichia coli. BMC Microbiol 16:1\u20138","journal-title":"BMC Microbiol"},{"key":"10755_CR35","doi-asserted-by":"publisher","first-page":"919","DOI":"10.1007\/s00709-011-0360-8","volume":"249","author":"VG Lewis","year":"2012","unstructured":"Lewis VG, Ween MP, McDevitt CA (2012) The role of ATP-binding cassette transporters in bacterial pathogenicity. Protoplasma 249:919\u2013942","journal-title":"Protoplasma"},{"issue":"2","key":"10755_CR36","doi-asserted-by":"publisher","first-page":"143","DOI":"10.2217\/fmb-2019-0235","volume":"15","author":"AL Colclough","year":"2020","unstructured":"Colclough AL, Alav I, Whittle EE, Pugh HL, Darby EM, Legood SW et al (2020) RND efflux pumps in Gram-negative bacteria; regulation, structure and role in antibiotic resistance. Future Microbiol 15(2):143\u2013157","journal-title":"Future Microbiol"},{"issue":"8","key":"10755_CR37","doi-asserted-by":"publisher","first-page":"2158","DOI":"10.1093\/jac\/dkac166","volume":"77","author":"X Wan","year":"2022","unstructured":"Wan X, Li Q, Olsen RH, Meng H, Zhang Z, Wang J et al (2022) Engineering a CRISPR interference system targeting AcrAB-TolC efflux pump to prevent multidrug resistance development in Escherichia coli. J Antimicrob Chemother 77(8):2158\u20132166","journal-title":"J Antimicrob Chemother"},{"key":"10755_CR38","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbc.2022.102482","author":"OE Burata","year":"2022","unstructured":"Burata OE, Yeh TJ, Macdonald CB, Stockbridge RB (2022) Still rocking in the structural era: a molecular overview of the small multidrug resistance (SMR) transporter family. J Biol Chem. https:\/\/doi.org\/10.1016\/j.jbc.2022.102482","journal-title":"J Biol Chem"},{"key":"10755_CR39","doi-asserted-by":"publisher","unstructured":"Kar D, Pradhan AA, Dutta A, Bhagavatula L, Datta S (2022) The multidrug and toxic compound extrusion (MATE) family in plants and their significance in metal transport. In: Kumar K, Srivastava S (eds) Plant metal and metalloid transporters. Springer, Singapore. https:\/\/doi.org\/10.1007\/978-981-19-6103-8_8","DOI":"10.1007\/978-981-19-6103-8_8"},{"issue":"8","key":"10755_CR40","doi-asserted-by":"publisher","first-page":"543","DOI":"10.1089\/fpd.2022.0015","volume":"19","author":"H Xia","year":"2022","unstructured":"Xia H, Yan N, Jin J, Hou W, Wang H, Zhou M (2022) Genomic characterization of ciprofloxacin resistance in laboratory-derived mutants of Vibrio parahaemolyticus. Foodborne Pathog Dis 19(8):543\u2013549","journal-title":"Foodborne Pathog Dis"},{"issue":"8","key":"10755_CR41","doi-asserted-by":"publisher","first-page":"768","DOI":"10.1016\/j.molmed.2020.05.001","volume":"26","author":"AJ Schaenzer","year":"2020","unstructured":"Schaenzer AJ, Wright GD (2020) Antibiotic resistance by enzymatic modification of antibiotic targets. Trends Mol Med 26(8):768\u2013782","journal-title":"Trends Mol Med"},{"key":"10755_CR42","doi-asserted-by":"crossref","unstructured":"Akhtar A, Fatima N, Khan HM (2022) Beta-lactamases and their classification: an overview. In: Shahid M, Singh A, Sami H (eds) Beta-lactam resistance in gram-negative bacteria: threats and challenges. Springer Nature Singapore, Singapore, pp 25\u201333","DOI":"10.1007\/978-981-16-9097-6_3"},{"issue":"7","key":"10755_CR43","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics11070884","volume":"11","author":"A Thacharodi","year":"2022","unstructured":"Thacharodi A, Lamont IL (2022) Aminoglycoside-modifying enzymes are sufficient to make Pseudomonas aeruginosa clinically resistant to key antibiotics. Antibiotics 11(7):884","journal-title":"Antibiotics"},{"issue":"3","key":"10755_CR44","doi-asserted-by":"publisher","first-page":"829","DOI":"10.1007\/s40121-023-00771-8","volume":"12","author":"DPM Sethuvel","year":"2023","unstructured":"Sethuvel DPM, Bakthavatchalam YD, Karthik M, Irulappan M, Shrivastava R, Periasamy H et al (2023) \u0392-lactam resistance in ESKAPE pathogens mediated through modifications in penicillin-binding proteins: an overview. Infect Dis Ther 12(3):829\u2013841","journal-title":"Infect Dis Ther"},{"key":"10755_CR45","doi-asserted-by":"publisher","unstructured":"Solano-G\u00e1lvez SG, Valencia-Segrove MF, Prado MJO, Boucieguez ABL, \u00c1lvarez-Hern\u00e1ndez DA, V\u00e1zquez-L\u00f3pez R (2020) Mechanisms of resistance to quinolones. In:\u00a0Mares M, Lim SHE, Lai\u00a0K-S, Cristina\u00a0R-T (eds)\u00a0Antimicrobial resistance - a one health perspective. IntechOpen. https:\/\/doi.org\/10.5772\/intechopen.92577","DOI":"10.5772\/intechopen.92577"},{"issue":"5","key":"10755_CR46","doi-asserted-by":"publisher","DOI":"10.3390\/ph14050420","volume":"14","author":"T Ali","year":"2021","unstructured":"Ali T, Basit A, Karim AM, Lee J-H, Jeon J-H, Rehman Su et al (2021) Mutation-based antibiotic resistance mechanism in methicillin-resistant Staphylococcus aureus clinical isolates. Pharmaceuticals 14(5):420","journal-title":"Pharmaceuticals"},{"issue":"12 Suppl 2","key":"10755_CR47","doi-asserted-by":"publisher","first-page":"S209","DOI":"10.1093\/infdis\/jiaa497","volume":"223","author":"WE Anthony","year":"2021","unstructured":"Anthony WE, Burnham CD, Dantas G, Kwon JH (2021) The gut microbiome as a reservoir for antimicrobial resistance. J Infect Dis 223(12 Suppl 2):S209\u2013S213","journal-title":"J Infect Dis"},{"issue":"2","key":"10755_CR48","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12020328","volume":"12","author":"C Michaelis","year":"2023","unstructured":"Michaelis C, Grohmann E (2023) Horizontal gene transfer of antibiotic resistance genes in biofilms. Antibiotics 12(2):328","journal-title":"Antibiotics"},{"issue":"7","key":"10755_CR49","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics9070372","volume":"9","author":"K Iskandar","year":"2020","unstructured":"Iskandar K, Molinier L, Hallit S, Sartelli M, Catena F, Coccolini F et al (2020) Drivers of antibiotic resistance transmission in low-and middle-income countries from a \u201cone health\u201d perspective\u2014a review. Antibiotics 9(7):372","journal-title":"Antibiotics"},{"key":"10755_CR50","doi-asserted-by":"publisher","DOI":"10.2174\/1874070702014010107","author":"AK Mittal","year":"2020","unstructured":"Mittal AK, Bhardwaj R, Mishra P, Rajput SK (2020) Antimicrobials misuse\/overuse: adverse effect, mechanism, challenges and strategies to combat resistance. Open Biotechnol J. https:\/\/doi.org\/10.2174\/1874070702014010107","journal-title":"Open Biotechnol J"},{"issue":"2","key":"10755_CR51","doi-asserted-by":"publisher","first-page":"152","DOI":"10.46542\/pe.2021.212.152162","volume":"21","author":"I Widowati","year":"2021","unstructured":"Widowati I, Budayanti NNS, Januraga PP, Duarsa DP (2021) Self-medication and self-treatment with short-term antibiotics in Asian countries: a literature review. Pharm Educ 21(2):152\u2013162","journal-title":"Pharm Educ"},{"issue":"5","key":"10755_CR52","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1038\/s41579-021-00649-x","volume":"20","author":"D Larsson","year":"2022","unstructured":"Larsson D, Flach C-F (2022) Antibiotic resistance in the environment. Nat Rev Microbiol 20(5):257\u2013269","journal-title":"Nat Rev Microbiol"},{"key":"10755_CR53","volume":"2","author":"A Mann","year":"2021","unstructured":"Mann A, Nehra K, Rana J, Dahiya T (2021) Antibiotic resistance in agriculture: perspectives on upcoming strategies to overcome upsurge in resistance. Curr Res Microb Sci 2:100030","journal-title":"Curr Res Microb Sci"},{"key":"10755_CR54","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2021.149205","volume":"798","author":"Y Shao","year":"2021","unstructured":"Shao Y, Wang Y, Yuan Y, Xie Y (2021) A systematic review on antibiotics misuse in livestock and aquaculture and regulation implications in China. Sci Total Environ 798:149205","journal-title":"Sci Total Environ"},{"issue":"7","key":"10755_CR55","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1089\/sur.2020.145","volume":"21","author":"AE Berndtson","year":"2020","unstructured":"Berndtson AE (2020) Increasing globalization and the movement of antimicrobial resistance between countries. Surg Infect 21(7):579\u2013585","journal-title":"Surg Infect"},{"issue":"12","key":"10755_CR56","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1111\/apm.13225","volume":"130","author":"J Manos","year":"2022","unstructured":"Manos J (2022) The human microbiome in disease and pathology. APMIS 130(12):690\u2013705","journal-title":"APMIS"},{"key":"10755_CR57","doi-asserted-by":"publisher","DOI":"10.3390\/nu12051474","author":"F Magne","year":"2020","unstructured":"Magne F, Gotteland M, Gauthier L, Zazueta A, Pesoa S, Navarrete P et al (2020) The firmicutes\/bacteroidetes ratio: a relevant marker of gut dysbiosis in obese patients? Nutrients. https:\/\/doi.org\/10.3390\/nu12051474","journal-title":"Nutrients"},{"key":"10755_CR58","doi-asserted-by":"publisher","DOI":"10.1016\/j.biopha.2023.114892","volume":"163","author":"P Petakh","year":"2023","unstructured":"Petakh P, Oksenych V, Kamyshnyi A (2023) The f\/b ratio as a biomarker for inflammation in COVID-19 and T2D: impact of metformin. Biomed Pharmacother 163:114892","journal-title":"Biomed Pharmacother"},{"issue":"29","key":"10755_CR59","doi-asserted-by":"publisher","first-page":"8787","DOI":"10.3748\/wjg.v21.i29.8787","volume":"21","author":"SM Jandhyala","year":"2015","unstructured":"Jandhyala SM, Talukdar R, Subramanyam C, Vuyyuru H, Sasikala M, Nageshwar RD (2015) Role of the normal gut microbiota. World J Gastroenterol 21(29):8787\u20138803","journal-title":"World J Gastroenterol"},{"issue":"4","key":"10755_CR60","first-page":"206","volume":"46","author":"M Sidhu","year":"2017","unstructured":"Sidhu M, van der Poorten D (2017) The gut microbiome. Aust Fam Physician 46(4):206\u2013211","journal-title":"Aust Fam Physician"},{"key":"10755_CR61","doi-asserted-by":"crossref","unstructured":"Ehrlich SD, MetaHIT Consortium (2010) MetaHIT: The european union project on metagenomics of the human intestinal tract. In: Metagenomics of the human body. Springer New York, New York, pp 307\u2013316","DOI":"10.1007\/978-1-4419-7089-3_15"},{"issue":"7758","key":"10755_CR62","doi-asserted-by":"publisher","first-page":"641","DOI":"10.1038\/s41586-019-1238-8","volume":"569","author":"LM Proctor","year":"2019","unstructured":"Proctor LM, Creasy HH, Fettweis JM, Lloyd-Price J, Mahurkar A, Zhou W et al (2019) The integrative human microbiome project. Nature 569(7758):641\u2013648","journal-title":"Nature"},{"key":"10755_CR63","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11061534","author":"LV McFarland","year":"2023","unstructured":"McFarland LV, Goldstein EJC, Kullar R (2023) Microbiome-related and infection control approaches to primary and secondary prevention of clostridioides difficile infections. Microorganisms. https:\/\/doi.org\/10.3390\/microorganisms11061534","journal-title":"Microorganisms"},{"key":"10755_CR64","volume":"16","author":"M Abavisani","year":"2024","unstructured":"Abavisani M, Ebadpour N, Khoshrou A, Sahebkar A (2024) Boosting vaccine effectiveness: the groundbreaking role of probiotics. J Agric Food Res 16:101189","journal-title":"J Agric Food Res"},{"issue":"13","key":"10755_CR65","doi-asserted-by":"publisher","DOI":"10.3390\/nu14132722","volume":"14","author":"AA Xu","year":"2022","unstructured":"Xu AA, Kennedy LK, Hoffman K, White DL, Kanwal F, El-Serag HB et al (2022) Dietary fatty acid intake and the colonic gut microbiota in humans. Nutrients 14(13):2722","journal-title":"Nutrients"},{"issue":"3","key":"10755_CR66","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1007\/s10123-023-00324-6","volume":"26","author":"J Siptroth","year":"2023","unstructured":"Siptroth J, Moskalenko O, Krumbiegel C, Ackermann J, Koch I, Pospisil H (2023) Variation of butyrate production in the gut microbiome in type 2 diabetes patients. Int Microbiol 26(3):601\u2013610","journal-title":"Int Microbiol"},{"key":"10755_CR67","doi-asserted-by":"publisher","DOI":"10.1016\/j.prp.2025.155931","volume":"269","author":"M Abavisani","year":"2025","unstructured":"Abavisani M, Tafti P, Khoshroo N, Ebadpour N, Khoshrou A, Kesharwani P et al (2025) The heart of the matter: how gut microbiota-targeted interventions influence cardiovascular diseases. Pathol Res Pract 269:155931","journal-title":"Pathol Res Pract"},{"issue":"6","key":"10755_CR68","doi-asserted-by":"publisher","first-page":"1025","DOI":"10.1016\/j.clnu.2023.04.001","volume":"42","author":"CS Kim","year":"2023","unstructured":"Kim CS, Jung S, Hwang GS, Shin DM (2023) Gut microbiota indole-3-propionic acid mediates neuroprotective effect of probiotic consumption in healthy elderly: a randomized, double-blind, placebo-controlled, multicenter trial and in vitro study. Clin Nutr 42(6):1025\u20131033","journal-title":"Clin Nutr"},{"issue":"2","key":"10755_CR69","doi-asserted-by":"publisher","first-page":"324","DOI":"10.1016\/j.ajcnut.2023.08.023","volume":"119","author":"Q Lu","year":"2024","unstructured":"Lu Q, Chen J, Jiang L, Geng T, Tian S, Liao Y et al (2024) Gut microbiota-derived secondary bile acids, bile acids receptor polymorphisms, and risk of cardiovascular disease in individuals with newly diagnosed type 2 diabetes: a cohort study. Am J Clin Nutr 119(2):324\u2013332","journal-title":"Am J Clin Nutr"},{"issue":"3","key":"10755_CR70","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1097\/MOG.0000000000000057","volume":"30","author":"JM Ridlon","year":"2014","unstructured":"Ridlon JM, Kang DJ, Hylemon PB, Bajaj JS (2014) Bile acids and the gut microbiome. Curr Opin Gastroenterol 30(3):332\u2013338","journal-title":"Curr Opin Gastroenterol"},{"issue":"1","key":"10755_CR71","doi-asserted-by":"publisher","first-page":"40","DOI":"10.3390\/compounds3010005","volume":"3","author":"J Bi\u00e9","year":"2023","unstructured":"Bi\u00e9 J, Sepodes B, Fernandes PCB, Ribeiro MHL (2023) Polyphenols in health and disease: gut microbiota, bioaccessibility, and bioavailability. Compounds 3(1):40\u201372","journal-title":"Compounds"},{"issue":"1","key":"10755_CR72","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/s00248-024-02357-4","volume":"87","author":"S Arbulu","year":"2024","unstructured":"Arbulu S, Kjos M (2024) Revisiting the multifaceted roles of bacteriocins. Microb Ecol 87(1):41","journal-title":"Microb Ecol"},{"key":"10755_CR73","doi-asserted-by":"publisher","DOI":"10.1128\/mbio.00886-20","author":"EC Soto-Martin","year":"2020","unstructured":"Soto-Martin EC, Warnke I, Farquharson FM, Christodoulou M, Horgan G, Derrien M et al (2020) Vitamin biosynthesis by human gut butyrate-producing bacteria and cross-feeding in synthetic microbial communities. MBio. https:\/\/doi.org\/10.1128\/mbio.00886-20","journal-title":"MBio"},{"key":"10755_CR74","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1016\/j.neuroscience.2024.11.068","volume":"565","author":"M Abavisani","year":"2025","unstructured":"Abavisani M, Faraji N, Ebadpour N, Kesharwani P, Sahebkar A (2025) Beyond digestion: exploring how the gut microbiota modulates human social behaviors. Neuroscience 565:52\u201362","journal-title":"Neuroscience"},{"key":"10755_CR75","doi-asserted-by":"publisher","DOI":"10.3390\/nu15163499","author":"J Wattanathorn","year":"2023","unstructured":"Wattanathorn J, Tong-Un T, Thukham-Mee W, Paholpak P, Rangseekhajee P (2023) A randomized, double-blind, placebo-controlled study of an anthocyanin-rich functional ingredient on cognitive function and eye dryness in late adulthood volunteers: roles of epigenetic and gut microbiome modulations. Nutrients. https:\/\/doi.org\/10.3390\/nu15163499","journal-title":"Nutrients"},{"key":"10755_CR76","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbr.2023.114820","volume":"460","author":"N Mutoh","year":"2024","unstructured":"Mutoh N, Moriya M, Xu C, Kato K, Arai S, Iwabuchi N et al (2024) Bifidobacterium breve M-16V regulates the autonomic nervous system via the intestinal environment: a double-blind, placebo-controlled study. Behav Brain Res 460:114820","journal-title":"Behav Brain Res"},{"key":"10755_CR77","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2023.1158137","volume":"14","author":"R Zhu","year":"2023","unstructured":"Zhu R, Fang Y, Li H, Liu Y, Wei J, Zhang S et al (2023) Psychobiotic Lactobacillus plantarum JYLP-326 relieves anxiety, depression, and insomnia symptoms in test anxious college via modulating the gut microbiota and its metabolism. Front Immunol 14:1158137","journal-title":"Front Immunol"},{"key":"10755_CR78","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1016\/j.bbi.2021.11.023","volume":"100","author":"P Tian","year":"2022","unstructured":"Tian P, Chen Y, Zhu H, Wang L, Qian X, Zou R et al (2022) Bifidobacterium breve CCFM1025 attenuates major depression disorder via regulating gut microbiome and tryptophan metabolism: a randomized clinical trial. Brain Behav Immun 100:233\u2013241","journal-title":"Brain Behav Immun"},{"key":"10755_CR79","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2022.897926","volume":"13","author":"Z Zhu","year":"2022","unstructured":"Zhu Z, Gu Y, Zeng C, Yang M, Yu H, Chen H et al (2022) Olanzapine-induced lipid disturbances: a potential mechanism through the gut microbiota-brain axis. Front Pharmacol 13:897926","journal-title":"Front Pharmacol"},{"issue":"24","key":"10755_CR80","doi-asserted-by":"publisher","first-page":"4415","DOI":"10.1111\/bph.14366","volume":"175","author":"J Walsh","year":"2018","unstructured":"Walsh J, Griffin BT, Clarke G, Hyland NP (2018) Drug-gut microbiota interactions: implications for neuropharmacology. Br J Pharmacol 175(24):4415\u20134429","journal-title":"Br J Pharmacol"},{"issue":"1","key":"10755_CR81","doi-asserted-by":"publisher","DOI":"10.1038\/s41392-023-01619-w","volume":"8","author":"Q Zhao","year":"2023","unstructured":"Zhao Q, Chen Y, Huang W, Zhou H, Zhang W (2023) Drug-microbiota interactions: an emerging priority for precision medicine. Signal Transduct Target Ther 8(1):386","journal-title":"Signal Transduct Target Ther"},{"key":"10755_CR82","doi-asserted-by":"publisher","DOI":"10.1016\/j.bcp.2025.116809","volume":"235","author":"D Ford","year":"2025","unstructured":"Ford D (2025) Interactions between the intestinal microbiota and drug metabolism \u2013 clinical implications and future opportunities. Biochem Pharmacol 235:116809","journal-title":"Biochem Pharmacol"},{"key":"10755_CR83","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-024-01068-4","author":"FC Ross","year":"2024","unstructured":"Ross FC, Patangia D, Grimaud G, Lavelle A, Dempsey EM, Ross RP et al (2024) The interplay between diet and the gut microbiome: implications for health and disease. Nat Rev Microbiol. https:\/\/doi.org\/10.1038\/s41579-024-01068-4","journal-title":"Nat Rev Microbiol"},{"key":"10755_CR84","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2023.1069954","volume":"13","author":"L Chen","year":"2023","unstructured":"Chen L, Liu B, Ren L, Du H, Fei C, Qian C et al (2023) High-fiber diet ameliorates gut microbiota, serum metabolism and emotional mood in type 2 diabetes patients. Front Cell Infect Microbiol 13:1069954","journal-title":"Front Cell Infect Microbiol"},{"issue":"11","key":"10755_CR85","doi-asserted-by":"publisher","first-page":"2343","DOI":"10.1093\/jn\/nxac161","volume":"152","author":"JP Karl","year":"2022","unstructured":"Karl JP, Armstrong NJ, Player RA, Rood JC, Soares JW, McClung HL (2022) The fecal metabolome links diet composition, foacidic positive ion conditions, chromatographicallyod processing, and the gut microbiota to gastrointestinal health in a randomized trial of adults consuming a processed diet. J Nutr 152(11):2343\u20132357","journal-title":"J Nutr"},{"issue":"1","key":"10755_CR86","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-38778-x","volume":"14","author":"KD Corbin","year":"2023","unstructured":"Corbin KD, Carnero EA, Dirks B, Igudesman D, Yi F, Marcus A et al (2023) Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial. Nat Commun 14(1):3161","journal-title":"Nat Commun"},{"issue":"8","key":"10755_CR87","doi-asserted-by":"publisher","first-page":"1510","DOI":"10.1136\/gutjnl-2019-320204","volume":"69","author":"RK Weersma","year":"2020","unstructured":"Weersma RK, Zhernakova A, Fu J (2020) Interaction between drugs and the gut microbiome. Gut 69(8):1510\u20131519","journal-title":"Gut"},{"issue":"3","key":"10755_CR88","doi-asserted-by":"publisher","first-page":"874","DOI":"10.1007\/s10620-020-06119-3","volume":"65","author":"SM Ervin","year":"2020","unstructured":"Ervin SM, Ramanan SV, Bhatt AP (2020) Relationship between the gut microbiome and systemic chemotherapy. Dig Dis Sci 65(3):874\u2013884","journal-title":"Dig Dis Sci"},{"key":"10755_CR89","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2020.104343","volume":"149","author":"H Shuwen","year":"2020","unstructured":"Shuwen H, Xi Y, Yuefen P, Jiamin X, Quan Q, Haihong L et al (2020) Effects of postoperative adjuvant chemotherapy and palliative chemotherapy on the gut microbiome in colorectal cancer. Microb Pathog 149:104343","journal-title":"Microb Pathog"},{"issue":"1","key":"10755_CR90","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-023-02895-w","volume":"23","author":"J Zhang","year":"2023","unstructured":"Zhang J, Zhang C, Zhang Q, Yu L, Chen W, Xue Y et al (2023) Meta-analysis of the effects of proton pump inhibitors on the human gut microbiota. BMC Microbiol 23(1):171","journal-title":"BMC Microbiol"},{"key":"10755_CR91","doi-asserted-by":"publisher","DOI":"10.3389\/fpsyt.2021.682868","volume":"12","author":"P Sj\u00f6stedt","year":"2021","unstructured":"Sj\u00f6stedt P, Enander J, Isung J (2021) Serotonin reuptake inhibitors and the gut microbiome: significance of the gut microbiome in relation to mechanism of action, treatment response, side effects, and tachyphylaxis. Front Psychiatry 12:682868","journal-title":"Front Psychiatry"},{"key":"10755_CR92","doi-asserted-by":"publisher","DOI":"10.3389\/fnbeh.2023.1132127","volume":"17","author":"G Rukavishnikov","year":"2023","unstructured":"Rukavishnikov G, Leonova L, Kasyanov E, Leonov V, Neznanov N, Mazo G (2023) Antimicrobial activity of antidepressants on normal gut microbiota: results of the in vitro study. Front Behav Neurosci 17:1132127","journal-title":"Front Behav Neurosci"},{"issue":"7","key":"10755_CR93","doi-asserted-by":"publisher","first-page":"1742","DOI":"10.1016\/j.cell.2018.05.008","volume":"173","author":"C Tropini","year":"2018","unstructured":"Tropini C, Moss EL, Merrill BD, Ng KM, Higginbottom SK, Casavant EP et al (2018) Transient osmotic perturbation causes long-term alteration to the gut microbiota. Cell 173(7):1742","journal-title":"Cell"},{"issue":"1","key":"10755_CR94","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.1260","volume":"11","author":"DV Patangia","year":"2022","unstructured":"Patangia DV, Anthony Ryan C, Dempsey E, Paul Ross R, Stanton C (2022) Impact of antibiotics on the human microbiome and consequences for host health. Microbiolopen 11(1):e1260","journal-title":"Microbiolopen"},{"key":"10755_CR95","doi-asserted-by":"publisher","DOI":"10.3390\/ijms24043074","author":"D Dahiya","year":"2023","unstructured":"Dahiya D, Nigam PS (2023) Antibiotic-therapy-induced gut dysbiosis affecting gut microbiota-brain axis and cognition: restoration by intake of probiotics and synbiotics. Int J Mol Sci. https:\/\/doi.org\/10.3390\/ijms24043074","journal-title":"Int J Mol Sci"},{"key":"10755_CR96","doi-asserted-by":"publisher","first-page":"572912","DOI":"10.3389\/fcimb.2020.572912","volume":"10","author":"J Ramirez","year":"2020","unstructured":"Ramirez J, Guarner F, Bustos Fernandez L, Maruy A, Sdepanian VL, Cohen H (2020) Antibiotics as major disruptors of gut microbiota. Front Cell Infect Microbiol 10:572912","journal-title":"Front Cell Infect Microbiol"},{"issue":"1","key":"10755_CR97","doi-asserted-by":"publisher","first-page":"1427","DOI":"10.1038\/s41467-020-15222-y","volume":"11","author":"J Sun","year":"2020","unstructured":"Sun J, Liao X-P, D\u2019Souza AW, Boolchandani M, Li S-H, Cheng K et al (2020) Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms. Nat Commun 11(1):1427","journal-title":"Nat Commun"},{"key":"10755_CR98","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.822689","volume":"13","author":"C Xu","year":"2022","unstructured":"Xu C, Kong L, Gao H, Cheng X, Wang X (2022) A review of current bacterial resistance to antibiotics in food animals. Front Microbiol 13:822689","journal-title":"Front Microbiol"},{"issue":"4","key":"10755_CR99","doi-asserted-by":"publisher","first-page":"e291","DOI":"10.1016\/S2542-5196(23)00026-8","volume":"7","author":"K Allel","year":"2023","unstructured":"Allel K, Day L, Hamilton A, Lin L, Furuya-Kanamori L, Moore CE et al (2023) Global antimicrobial-resistance drivers: an ecological country-level study at the human\u2013animal interface. Lancet Planet Health 7(4):e291\u2013e303","journal-title":"Lancet Planet Health"},{"key":"10755_CR100","doi-asserted-by":"crossref","unstructured":"Ma L-c, Zhao H-q, Wu LB, Liu C (2023) Impacts of the microbiome on human, animal, and environmental health from a One Health perspective. Sci One Health 2:100037","DOI":"10.1016\/j.soh.2023.100037"},{"issue":"4","key":"10755_CR101","doi-asserted-by":"publisher","first-page":"345","DOI":"10.4103\/ijmr.IJMR_1979_17","volume":"150","author":"S Singh","year":"2019","unstructured":"Singh S, Verma N, Taneja N (2019) The human gut resistome: current concepts & future prospects. Indian J Med Res 150(4):345\u2013358","journal-title":"Indian J Med Res"},{"issue":"3","key":"10755_CR102","doi-asserted-by":"publisher","DOI":"10.3390\/nu14030453","volume":"14","author":"S Wu","year":"2022","unstructured":"Wu S, Bhat ZF, Gounder RS, Mohamed Ahmed IA, Al-Juhaimi FY, Ding Y et al (2022) Effect of dietary protein and processing on gut microbiota\u2014a systematic review. Nutrients 14(3):453","journal-title":"Nutrients"},{"issue":"1","key":"10755_CR103","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2021.2022442","volume":"14","author":"R Tan","year":"2022","unstructured":"Tan R, Jin M, Shao Y, Yin J, Li H, Chen T et al (2022) High-sugar, high-fat, and high-protein diets promote antibiotic resistance gene spreading in the mouse intestinal microbiota. Gut Microbes 14(1):2022442","journal-title":"Gut Microbes"},{"issue":"3","key":"10755_CR104","doi-asserted-by":"publisher","first-page":"523","DOI":"10.3181\/00379727-73-17731","volume":"73","author":"E Stokstad","year":"1950","unstructured":"Stokstad E, Jukes TH (1950) Further observations on the \u201canimal protein factor.\u201d Proc Soc Exp Biol Med 73(3):523\u2013528","journal-title":"Proc Soc Exp Biol Med"},{"issue":"1","key":"10755_CR105","doi-asserted-by":"publisher","first-page":"763","DOI":"10.1038\/s41467-024-45111-7","volume":"15","author":"C Zhao","year":"2024","unstructured":"Zhao C, Wang Y, Mulchandani R, Van Boeckel TP (2024) Global surveillance of antimicrobial resistance in food animals using priority drugs maps. Nat Commun 15(1):763","journal-title":"Nat Commun"},{"issue":"10","key":"10755_CR106","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1089\/fpd.2017.2283","volume":"14","author":"BE Karp","year":"2017","unstructured":"Karp BE, Tate H, Plumblee JR, Dessai U, Whichard JM, Thacker EL et al (2017) National antimicrobial resistance monitoring system: two decades of advancing public health through integrated surveillance of antimicrobial resistance. Foodborne Pathog Dis 14(10):545\u2013557","journal-title":"Foodborne Pathog Dis"},{"key":"10755_CR107","unstructured":"Food U, Administration D (2000) Judicious use of antimicrobials for beef cattle veterinarians. US Food and Drug Administration Center for Veterinary Medicine, US"},{"key":"10755_CR108","doi-asserted-by":"crossref","unstructured":"Gigu\u00e8re S, Prescott JF, Dowling P (2013) Antimicrobial therapy in veterinary medicine. John Wiley and Sons, New Jersey, United States","DOI":"10.1002\/9781118675014"},{"key":"10755_CR109","doi-asserted-by":"publisher","first-page":"49","DOI":"10.2147\/IDR.S55778","volume":"8","author":"V Economou","year":"2015","unstructured":"Economou V, Gousia P (2015) Agriculture and food animals as a source of antimicrobial-resistant bacteria. Infect Drug Resist 8:49\u201361","journal-title":"Infect Drug Resist"},{"key":"10755_CR110","doi-asserted-by":"publisher","first-page":"232","DOI":"10.1016\/j.fm.2014.04.004","volume":"42","author":"F Rossi","year":"2014","unstructured":"Rossi F, Rizzotti L, Felis GE, Torriani S (2014) Horizontal gene transfer among microorganisms in food: current knowledge and future perspectives. Food Microbiol 42:232\u2013243","journal-title":"Food Microbiol"},{"key":"10755_CR111","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2024.172712","volume":"931","author":"X Luo","year":"2024","unstructured":"Luo X, Hounmanou YMG, Ndayisenga F, Yu Z (2024) Spontaneous fermentation mitigates the frequency of genes encoding antimicrobial resistance spreading from the phyllosphere reservoir to the diet. Sci Total Environ 931:172712","journal-title":"Sci Total Environ"},{"key":"10755_CR112","unstructured":"De\u00e1k T, Farkas J (2013) Microbiology of thermally preserved foods: canning and novel physical methods. DEStech Publications, Inc, United States"},{"key":"10755_CR113","doi-asserted-by":"publisher","DOI":"10.3390\/foods11192966","author":"M Samtiya","year":"2022","unstructured":"Samtiya M, Matthews KR, Dhewa T, Puniya AK (2022) Antimicrobial resistance in the food chain: trends, mechanisms, pathways, and possible regulation strategies. Foods. https:\/\/doi.org\/10.3390\/foods11192966","journal-title":"Foods"},{"key":"10755_CR114","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.00362","volume":"9","author":"C Jans","year":"2018","unstructured":"Jans C, Sarno E, Collineau L, Meile L, St\u00e4rk KDC, Stephan R (2018) Consumer exposure to antimicrobial resistant bacteria from food at Swiss retail level. Front Microbiol 9:362","journal-title":"Front Microbiol"},{"key":"10755_CR115","doi-asserted-by":"publisher","first-page":"1458536","DOI":"10.3389\/fnut.2024.1458536","volume":"11","author":"S Todorovic","year":"2024","unstructured":"Todorovic S, Akpinar A, Assun\u00e7\u00e3o R, B\u00e4r C, Bavaro SL, Berkel Kasikci M et al (2024) Health benefits and risks of fermented foods\u2014the PIMENTO initiative. Front Nutr 11:1458536","journal-title":"Front Nutr"},{"issue":"1","key":"10755_CR116","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1002\/fft2.123","volume":"3","author":"K Jasiak","year":"2022","unstructured":"Jasiak K, Amund D (2022) Are spontaneously fermented plant-based foods potential sources of transferable antibiotic resistance genes? Food Front 3(1):46\u201355","journal-title":"Food Front"},{"issue":"5","key":"10755_CR117","doi-asserted-by":"publisher","first-page":"2877","DOI":"10.1111\/jam.15741","volume":"133","author":"S Un Jan Contreras","year":"2022","unstructured":"Un Jan Contreras S, Gardner CM (2022) Environmental fate and behaviour of antibiotic resistance genes and small interference RNAs released from genetically modified crops. J Appl. Microbiol 133(5):2877\u20132892","journal-title":"J Appl. Microbiol"},{"issue":"7","key":"10755_CR118","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0022629","volume":"6","author":"AJ Gassmann","year":"2011","unstructured":"Gassmann AJ, Petzold-Maxwell JL, Keweshan RS, Dunbar MW (2011) Field-evolved resistance to Bt maize by western corn rootworm. PLoS ONE 6(7):e22629","journal-title":"PLoS ONE"},{"key":"10755_CR119","doi-asserted-by":"crossref","unstructured":"AlSheikh HMA, Sultan I, Kumar V, Rather IA, Al-Sheikh H, Tasleem Jan A et al (2020) Plant-based phytochemicals as possible alternative to antibiotics in combating bacterial drug resistance. Antibiotics (Basel) 9(8):480","DOI":"10.3390\/antibiotics9080480"},{"issue":"8","key":"10755_CR120","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics13080746","volume":"13","author":"P Angelini","year":"2024","unstructured":"Angelini P (2024) Plant-derived antimicrobials and their crucial role in combating antimicrobial resistance. Antibiotics 13(8):746","journal-title":"Antibiotics"},{"key":"10755_CR121","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.1103476","volume":"13","author":"H Zhou","year":"2023","unstructured":"Zhou H, Chen L, Ouyang K, Zhang Q, Wang W (2023) Antibacterial activity and mechanism of flavonoids from Chimonanthus salicifolius S. Y. Hu. and its transcriptome analysis against Staphylococcus aureus. Front Microbiol 13:2022","journal-title":"Front Microbiol"},{"issue":"5","key":"10755_CR122","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1016\/j.ijantimicag.2005.09.002","volume":"26","author":"TP Cushnie","year":"2005","unstructured":"Cushnie TP, Lamb AJ (2005) Antimicrobial activity of flavonoids. Int J Antimicrob Agents 26(5):343\u2013356","journal-title":"Int J Antimicrob Agents"},{"key":"10755_CR123","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics14040334","author":"Z Zhang","year":"2025","unstructured":"Zhang Z, Cao M, Shang Z, Xu J, Chen X, Zhu Z et al (2025) Research progress on the antibacterial activity of natural flavonoids. Antibiotics. https:\/\/doi.org\/10.3390\/antibiotics14040334","journal-title":"Antibiotics"},{"key":"10755_CR124","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1472-6882-14-499","volume":"14","author":"RK Ulrey","year":"2014","unstructured":"Ulrey RK, Barksdale SM, Zhou W, van Hoek ML (2014) Cranberry proanthocyanidins have anti-biofilm properties against Pseudomonas aeruginosa. BMC Complement Altern Med 14:1\u201312","journal-title":"BMC Complement Altern Med"},{"key":"10755_CR125","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1016\/j.jff.2015.05.016","volume":"17","author":"J Sun","year":"2015","unstructured":"Sun J, Marais JP, Khoo C, LaPlante K, Vejborg RM, Givskov M et al (2015) Cranberry (Vaccinium macrocarpon) oligosaccharides decrease biofilm formation by uropathogenic Escherichia coli. J Funct Foods 17:235\u2013242","journal-title":"J Funct Foods"},{"key":"10755_CR126","doi-asserted-by":"publisher","DOI":"10.3390\/molecules30112300","author":"MJ Zai","year":"2025","unstructured":"Zai MJ, Cheesman MJ, Cock IE (2025) Flavonoids identified in Terminalia spp. inhibit gastrointestinal pathogens and potentiate conventional antibiotics via efflux pump inhibition. Molecules. https:\/\/doi.org\/10.3390\/molecules30112300","journal-title":"Molecules"},{"issue":"9","key":"10755_CR127","doi-asserted-by":"publisher","first-page":"3847","DOI":"10.1128\/AAC.49.9.3847-3857.2005","volume":"49","author":"M Suarez","year":"2005","unstructured":"Suarez M, Haenni M, Canarelli S, Fisch F, Chodanowski P, Servis C et al (2005) Structure-function characterization and optimization of a plant-derived antibacterial peptide. Antimicrob Agents Chemother 49(9):3847\u20133857","journal-title":"Antimicrob Agents Chemother"},{"issue":"2","key":"10755_CR128","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1128\/CMR.00117-14","volume":"28","author":"X-Z Li","year":"2015","unstructured":"Li X-Z, Pl\u00e9siat P, Nikaido H (2015) The challenge of efflux-mediated antibiotic resistance in gram-negative bacteria. Clin Microbiol Rev 28(2):337\u2013418","journal-title":"Clin Microbiol Rev"},{"issue":"1","key":"10755_CR129","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1128\/CMR.19.1.50-62.2006","volume":"19","author":"CF Carson","year":"2006","unstructured":"Carson CF, Hammer KA, Riley TV (2006) Melaleuca alternifolia (tea tree) oil: a review of antimicrobial and other medicinal properties. Clin Microbiol Rev 19(1):50\u201362","journal-title":"Clin Microbiol Rev"},{"issue":"16","key":"10755_CR130","doi-asserted-by":"publisher","first-page":"1280","DOI":"10.1080\/14786419.2014.895729","volume":"28","author":"A Bag","year":"2014","unstructured":"Bag A, Chattopadhyay RR (2014) Efflux-pump inhibitory activity of a gallotannin from Terminalia chebula fruit against multidrug-resistant uropathogenic Escherichia coli. Nat Prod Res 28(16):1280\u20131283","journal-title":"Nat Prod Res"},{"issue":"7","key":"10755_CR131","doi-asserted-by":"publisher","first-page":"874","DOI":"10.1038\/s41564-021-00912-0","volume":"6","author":"Y Liu","year":"2021","unstructured":"Liu Y, Yang K, Jia Y, Shi J, Tong Z, Fang D et al (2021) Gut microbiome alterations in high-fat-diet-fed mice are associated with antibiotic tolerance. Nat Microbiol 6(7):874\u2013884","journal-title":"Nat Microbiol"},{"issue":"3","key":"10755_CR132","doi-asserted-by":"publisher","first-page":"1077","DOI":"10.1007\/s00394-022-03062-z","volume":"62","author":"G Jamar","year":"2023","unstructured":"Jamar G, Pisani LP (2023) Inflammatory crosstalk between saturated fatty acids and gut microbiota\u2013white adipose tissue axis. Eur J Nutr 62(3):1077\u20131091","journal-title":"Eur J Nutr"},{"issue":"Suppl 1","key":"10755_CR133","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1007\/s10068-016-0112-9","volume":"25","author":"Y Okazaki","year":"2016","unstructured":"Okazaki Y, Sekita A, Chiji H, Kato N (2016) Consumption of lily bulb modulates fecal ratios of firmicutes and bacteroidetes phyla in rats fed a high-fat diet. Food Sci Biotechnol 25(Suppl 1):153\u2013156","journal-title":"Food Sci Biotechnol"},{"issue":"3","key":"10755_CR134","doi-asserted-by":"publisher","first-page":"e00101","DOI":"10.1128\/mbio.00101-22","volume":"13","author":"A Oliver","year":"2022","unstructured":"Oliver A, Xue Z, Villanueva Yirui T, Durbin-Johnson B, Alkan Z, Taft Diana H et al (2022) Association of diet and antimicrobial resistance in healthy U.S. adults. mBio 13(3):e00101\u2013e00122","journal-title":"mBio"},{"key":"10755_CR135","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2021.669672","volume":"12","author":"T Okamura","year":"2021","unstructured":"Okamura T, Hashimoto Y, Majima S, Senmaru T, Ushigome E, Nakanishi N et al (2021) Trans fatty acid intake induces intestinal inflammation and impaired glucose tolerance. Front Immunol 12:669672","journal-title":"Front Immunol"},{"issue":"5","key":"10755_CR136","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1007\/s13197-010-0225-8","volume":"48","author":"V Dhaka","year":"2011","unstructured":"Dhaka V, Gulia N, Ahlawat KS, Khatkar BS (2011) Trans fats-sources, health risks and alternative approach - a review. J Food Sci Technol 48(5):534\u2013541","journal-title":"J Food Sci Technol"},{"key":"10755_CR137","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuad037","author":"C Borreby","year":"2023","unstructured":"Borreby C, Lilleb\u00e6k EMS, Kallipolitis BH (2023) Anti-infective activities of long-chain fatty acids against foodborne pathogens. FEMS Microbiol Rev. https:\/\/doi.org\/10.1093\/femsre\/fuad037","journal-title":"FEMS Microbiol Rev"},{"key":"10755_CR138","doi-asserted-by":"publisher","DOI":"10.3390\/biomedicines9040334","author":"DC Cora\u00e7a-Huber","year":"2021","unstructured":"Cora\u00e7a-Huber DC, Steixner S, Wurm A, Nogler M (2021) Antibacterial and anti-biofilm activity of omega-3 polyunsaturated fatty acids against periprosthetic joint infections-isolated multi-drug resistant strains. Biomedicines. https:\/\/doi.org\/10.3390\/biomedicines9040334","journal-title":"Biomedicines"},{"key":"10755_CR139","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1016\/j.micpath.2016.08.025","volume":"99","author":"M Sun","year":"2016","unstructured":"Sun M, Zhou Z, Dong J, Zhang J, Xia Y, Shu R (2016) Antibacterial and antibiofilm activities of docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) against periodontopathic bacteria. Microb Pathog 99:196\u2013203","journal-title":"Microb Pathog"},{"key":"10755_CR140","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20235895","author":"N Soni","year":"2019","unstructured":"Soni N, Ross AB, Scheers N, Nookaew I, Gabrielsson BG, Sandberg AS (2019) The omega-3 fatty acids EPA and DHA, as a part of a murine high-fat diet, reduced lipid accumulation in brown and white adipose tissues. Int J Mol Sci. https:\/\/doi.org\/10.3390\/ijms20235895","journal-title":"Int J Mol Sci"},{"issue":"3","key":"10755_CR141","doi-asserted-by":"publisher","DOI":"10.1128\/Spectrum.01455-21","volume":"9","author":"M Zang","year":"2021","unstructured":"Zang M, Adams FG, Hassan KA, Eijkelkamp BA (2021) The impact of omega-3 fatty acids on the evolution of Acinetobacter baumannii drug resistance. Microbiol Spectr 9(3):e0145521","journal-title":"Microbiol Spectr"},{"key":"10755_CR142","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.575102","author":"Y Zhang","year":"2020","unstructured":"Zhang Y, Liang X-F, He S, Chen X, Wang J, Li J et al (2020) Effects of high carbohydrate diet-modulated microbiota on gut health in Chinese perch. Front Microbiol. https:\/\/doi.org\/10.3389\/fmicb.2020.575102","journal-title":"Front Microbiol"},{"key":"10755_CR143","doi-asserted-by":"publisher","DOI":"10.3390\/nu14183809","author":"VJ Clemente-Su\u00e1rez","year":"2022","unstructured":"Clemente-Su\u00e1rez VJ, Mielgo-Ayuso J, Mart\u00edn-Rodr\u00edguez A, Ramos-Campo DJ, Redondo-Fl\u00f3rez L, Tornero-Aguilera JF (2022) The burden of carbohydrates in health and disease. Nutrients. https:\/\/doi.org\/10.3390\/nu14183809","journal-title":"Nutrients"},{"key":"10755_CR144","doi-asserted-by":"publisher","DOI":"10.3390\/nu10060761","author":"MH Do","year":"2018","unstructured":"Do MH, Lee E, Oh MJ, Kim Y, Park HY (2018) High-glucose or -fructose diet cause changes of the gut microbiota and metabolic disorders in mice without body weight change. Nutrients. https:\/\/doi.org\/10.3390\/nu10060761","journal-title":"Nutrients"},{"issue":"1","key":"10755_CR145","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1002\/ibd.22964","volume":"19","author":"AM Berg","year":"2013","unstructured":"Berg AM, Kelly CP, Farraye FA (2013) Clostridium difficile infection in the inflammatory bowel disease patient. Inflamm Bowel Dis 19(1):194\u2013204","journal-title":"Inflamm Bowel Dis"},{"issue":"8","key":"10755_CR146","doi-asserted-by":"publisher","first-page":"1095","DOI":"10.3390\/nu4081095","volume":"4","author":"K Brown","year":"2012","unstructured":"Brown K, DeCoffe D, Molcan E, Gibson DL (2012) Diet-induced dysbiosis of the intestinal microbiota and the effects on immunity and disease. Nutrients 4(8):1095\u20131119","journal-title":"Nutrients"},{"issue":"33","key":"10755_CR147","doi-asserted-by":"publisher","first-page":"14691","DOI":"10.1073\/pnas.1005963107","volume":"107","author":"C De Filippo","year":"2010","unstructured":"De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S et al (2010) Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 107(33):14691\u201314696","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"1","key":"10755_CR148","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1186\/s12967-017-1175-y","volume":"15","author":"RK Singh","year":"2017","unstructured":"Singh RK, Chang HW, Yan D, Lee KM, Ucmak D, Wong K et al (2017) Influence of diet on the gut microbiome and implications for human health. J Transl Med 15(1):73","journal-title":"J Transl Med"},{"issue":"4","key":"10755_CR149","doi-asserted-by":"publisher","first-page":"1417","DOI":"10.3390\/nu5041417","volume":"5","author":"J Slavin","year":"2013","unstructured":"Slavin J (2013) Fiber and prebiotics: mechanisms and health benefits. Nutrients 5(4):1417\u20131435","journal-title":"Nutrients"},{"key":"10755_CR150","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2024.1380476","volume":"15","author":"J Kopczy\u0144ska","year":"2024","unstructured":"Kopczy\u0144ska J, Kowalczyk M (2024) The potential of short-chain fatty acid epigenetic regulation in chronic low-grade inflammation and obesity. Front Immunol 15:1380476","journal-title":"Front Immunol"},{"key":"10755_CR151","doi-asserted-by":"publisher","first-page":"3126","DOI":"10.1007\/s10620-012-2259-4","volume":"57","author":"H-B Wang","year":"2012","unstructured":"Wang H-B, Wang P-Y, Wang X, Wan Y-L, Liu Y-C (2012) Butyrate enhances intestinal epithelial barrier function via up-regulation of tight junction protein claudin-1 transcription. Dig Dis Sci 57:3126\u20133135","journal-title":"Dig Dis Sci"},{"key":"10755_CR152","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.1041885","volume":"13","author":"H Liu","year":"2023","unstructured":"Liu H, Zhao J, Zhang W, Nie C (2023) Impacts of sodium butyrate on intestinal mucosal barrier and intestinal microbial community in a weaned piglet model. Front Microbiol 13:1041885","journal-title":"Front Microbiol"},{"key":"10755_CR153","doi-asserted-by":"publisher","DOI":"10.1093\/jas\/skac217","author":"TN Gaire","year":"2022","unstructured":"Gaire TN, Noyes NR, Scott HM, Ericsson AC, Dunmire K, Tokach MD et al (2022) A longitudinal investigation of the effects of age, dietary fiber type and level, and injectable antimicrobials on the fecal microbiome and antimicrobial resistance of finisher pigs. J Anim Sci. https:\/\/doi.org\/10.1093\/jas\/skac217","journal-title":"J Anim Sci"},{"key":"10755_CR154","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.01110","volume":"11","author":"Q Li","year":"2020","unstructured":"Li Q, Peng X, Burrough ER, Sahin O, Gould SA, Gabler NK et al (2020) Dietary soluble and insoluble fiber with or without enzymes altered the intestinal microbiota in weaned pigs challenged with enterotoxigenic E. coli F18. Front Microbiol 11:1110","journal-title":"Front Microbiol"},{"key":"10755_CR155","doi-asserted-by":"publisher","DOI":"10.3390\/nu13093188","author":"T Sauvaitre","year":"2021","unstructured":"Sauvaitre T, Durif C, Sivignon A, Chalancon S, Van de Wiele T, Etienne-Mesmin L et al (2021) In vitro evaluation of dietary fiber anti-infectious properties against food-borne enterotoxigenic Escherichia coli. Nutrients. https:\/\/doi.org\/10.3390\/nu13093188","journal-title":"Nutrients"},{"issue":"5","key":"10755_CR156","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0126014","volume":"10","author":"J Zeng","year":"2015","unstructured":"Zeng J, Wu G, Yang W, Gu X, Liang W, Yao Y et al (2015) A serum vitamin D level< 25nmol\/l pose high tuberculosis risk: a meta-analysis. PLoS ONE 10(5):e0126014","journal-title":"PLoS ONE"},{"issue":"5","key":"10755_CR157","doi-asserted-by":"publisher","first-page":"1059","DOI":"10.3945\/ajcn.115.113886","volume":"102","author":"N Tukvadze","year":"2015","unstructured":"Tukvadze N, Sanikidze E, Kipiani M, Hebbar G, Easley KA, Shenvi N et al (2015) High-dose vitamin D3 in adults with pulmonary tuberculosis: a double-blind randomized controlled trial. Am J Clin Nutr 102(5):1059\u20131069","journal-title":"Am J Clin Nutr"},{"key":"10755_CR158","doi-asserted-by":"publisher","first-page":"715","DOI":"10.1007\/s15010-015-0815-5","volume":"43","author":"J Thomason","year":"2015","unstructured":"Thomason J, Rentsch C, Stenehjem EA, Hidron AI, Rimland D (2015) Association between vitamin D deficiency and methicillin-resistant Staphylococcus aureus infection. Infection 43:715\u2013722","journal-title":"Infection"},{"issue":"5","key":"10755_CR159","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1139\/cjpp-2014-0386","volume":"93","author":"P Selvaraj","year":"2015","unstructured":"Selvaraj P, Harishankar M, Afsal K (2015) Vitamin D: immuno-modulation and tuberculosis treatment. Can J Physiol Pharmacol 93(5):377\u2013384","journal-title":"Can J Physiol Pharmacol"},{"key":"10755_CR160","doi-asserted-by":"crossref","unstructured":"Y\u0131ld\u0131r\u0131m O, Y\u0131ld\u0131r\u0131m T, Se\u00e7kin Y, Osanmaz P, Bilgi\u00e7 Y, Mete R (2017) The influence of vitamin D deficiency on eradication rates of Helicobacter pylori. Adv Clin Exp Med 26(9):1376-81","DOI":"10.17219\/acem\/65430"},{"key":"10755_CR161","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1016\/j.intimp.2015.11.033","volume":"30","author":"W Nouari","year":"2016","unstructured":"Nouari W, Ysmail-Dahlouk L, Aribi M (2016) Vitamin D3 enhances bactericidal activity of macrophage against Pseudomonas aeruginosa. Int Immunopharmacol 30:94\u2013101","journal-title":"Int Immunopharmacol"},{"key":"10755_CR162","doi-asserted-by":"publisher","DOI":"10.3390\/nu12010236","author":"AF Gombart","year":"2020","unstructured":"Gombart AF, Pierre A, Maggini S (2020) A review of micronutrients and the immune system-working in harmony to reduce the risk of infection. Nutrients. https:\/\/doi.org\/10.3390\/nu12010236","journal-title":"Nutrients"},{"issue":"6","key":"10755_CR163","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1016\/j.chom.2019.04.004","volume":"25","author":"TA Harris","year":"2019","unstructured":"Harris TA, Gattu S, Propheter DC, Kuang Z, Bel S, Ruhn KA et al (2019) Resistin-like molecule \u03b1 provides vitamin-A-dependent antimicrobial protection in the skin. Cell Host Microbe 25(6):777","journal-title":"Cell Host Microbe"},{"issue":"5","key":"10755_CR164","doi-asserted-by":"publisher","first-page":"2280","DOI":"10.4049\/jimmunol.1301686","volume":"192","author":"M Wheelwright","year":"2014","unstructured":"Wheelwright M, Kim EW, Inkeles MS, De Leon A, Pellegrini M, Krutzik SR et al (2014) All-trans retinoic acid\u2013triggered antimicrobial activity against Mycobacterium tuberculosis is dependent on NPC2. J Immunol 192(5):2280\u20132290","journal-title":"J Immunol"},{"issue":"6","key":"10755_CR165","doi-asserted-by":"publisher","DOI":"10.1016\/j.psj.2022.101858","volume":"101","author":"A Calik","year":"2022","unstructured":"Calik A, Emami NK, Schyns G, White MB, Walsh MC, Romero LF et al (2022) Influence of dietary vitamin E and selenium supplementation on broilers subjected to heat stress, Part II: oxidative stress, immune response, gut integrity, and intestinal microbiota. Poult Sci 101(6):101858","journal-title":"Poult Sci"},{"issue":"7","key":"10755_CR166","doi-asserted-by":"publisher","first-page":"1578","DOI":"10.1016\/j.cell.2012.04.037","volume":"149","author":"H Chung","year":"2012","unstructured":"Chung H, Pamp S\u00fcnjeJ, Hill JA, Surana NK, Edelman SM, Troy EB et al (2012) Gut immune maturation depends on colonization with a host-specific microbiota. Cell 149(7):1578\u20131593","journal-title":"Cell"},{"key":"10755_CR167","doi-asserted-by":"crossref","unstructured":"Naguib MM, Valvano MA (2018) Vitamin E increases antimicrobial sensitivity by inhibiting bacterial lipocalin antibiotic binding. mSphere. https:\/\/doi.org\/10.1128\/msphere.00564\u201318","DOI":"10.1128\/mSphere.00564-18"},{"key":"10755_CR168","doi-asserted-by":"crossref","unstructured":"Tintino SR, Souza VCA, Silva J, Oliveira-Tintino CDM, Pereira PS, Leal-Balbino TC et al (2020) Effect of vitamin K(3) inhibiting the function of NorA efflux pump and its gene expression on Staphylococcus aureus. Membranes (Basel) 10(6):1\u201318","DOI":"10.3390\/membranes10060130"},{"issue":"1","key":"10755_CR169","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1016\/j.sjbs.2015.09.004","volume":"24","author":"JC Andrade","year":"2017","unstructured":"Andrade JC, Morais Braga MF, Guedes GM, Tintino SR, Freitas MA, Quintans LJ Jr. et al (2017) Menadione (vitamin K) enhances the antibiotic activity of drugs by cell membrane permeabilization mechanism. Saudi J Biol Sci 24(1):59\u201364","journal-title":"Saudi J Biol Sci"},{"issue":"1","key":"10755_CR170","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1186\/s12866-024-03293-6","volume":"24","author":"LL Lutfi","year":"2024","unstructured":"Lutfi LL, Shaaban MI, Elshaer SL (2024) Vitamin D and vitamin K1 as novel inhibitors of biofilm in Gram-negative bacteria. BMC Microbiol 24(1):173","journal-title":"BMC Microbiol"},{"key":"10755_CR171","doi-asserted-by":"crossref","unstructured":"Jia T, Liu D, Bi X, Li M, Cai Z, Fu J et al (2022) The AhR ligand phthiocol and vitamin K analogs as Pseudomonas aeruginosa quorum sensing inhibitors. Frontiers in Microbiology 13:896687","DOI":"10.3389\/fmicb.2022.896687"},{"key":"10755_CR172","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.847449","volume":"13","author":"WM Abdelraheem","year":"2022","unstructured":"Abdelraheem WM, Refaie MMM, Yousef RKM, Abd El Fatah AS, Mousa YM, Rashwan R (2022) Assessment of antibacterial and anti-biofilm effects of vitamin C against Pseudomonas aeruginosa clinical isolates. Front Microbiol 13:847449","journal-title":"Front Microbiol"},{"issue":"3","key":"10755_CR173","doi-asserted-by":"publisher","DOI":"10.1016\/j.isci.2022.103894","volume":"25","author":"C Xu","year":"2022","unstructured":"Xu C, Dong N, Chen K, Yang X, Zeng P, Hou C et al (2022) Bactericidal, anti-biofilm, and anti-virulence activity of vitamin C against carbapenem-resistant hypervirulent Klebsiella pneumoniae. iScience 25(3):103894","journal-title":"iScience"},{"key":"10755_CR174","doi-asserted-by":"publisher","first-page":"770","DOI":"10.1016\/j.biopha.2017.01.001","volume":"88","author":"M-G Sun","year":"2017","unstructured":"Sun M-G, Huang Y, Xu Y-H, Cao Y-X (2017) Efficacy of vitamin B complex as an adjuvant therapy for the treatment of complicated vulvovaginal candidiasis: an in vivo and in vitro study. Biomed Pharmacother 88:770\u2013777","journal-title":"Biomed Pharmacother"},{"key":"10755_CR175","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.00595","volume":"10","author":"X Xing","year":"2019","unstructured":"Xing X, Liao Z, Tan F, Zhu Z, Jiang Y, Cao Y (2019) Effect of nicotinamide against Candida albicans. Front Microbiol 10:595","journal-title":"Front Microbiol"},{"issue":"2","key":"10755_CR176","doi-asserted-by":"publisher","first-page":"266","DOI":"10.1111\/j.1574-6968.2008.01135.x","volume":"282","author":"D Prusty","year":"2008","unstructured":"Prusty D, Mehra P, Srivastava S, Shivange AV, Gupta A, Roy N et al (2008) Nicotinamide inhibits Plasmodium falciparum Sir2 activity in vitro and parasite growth. FEMS Microbiol Lett 282(2):266\u2013272","journal-title":"FEMS Microbiol Lett"},{"issue":"1","key":"10755_CR177","doi-asserted-by":"publisher","first-page":"819","DOI":"10.1021\/acsomega.8b03139","volume":"4","author":"M R\u00f3wnicki","year":"2019","unstructured":"R\u00f3wnicki M, Dabrowska Z, Wojciechowska M, Wierzba AJ, Maximova K, Gryko D et al (2019) Inhibition of Escherichia coli growth by vitamin B12\u2013peptide nucleic acid conjugates. ACS Omega 4(1):819\u2013824","journal-title":"ACS Omega"},{"key":"10755_CR178","doi-asserted-by":"publisher","first-page":"482","DOI":"10.1016\/j.jtemb.2018.02.004","volume":"50","author":"M Maywald","year":"2018","unstructured":"Maywald M, Wang F, Rink L (2018) Zinc supplementation plays a crucial role in T helper 9 differentiation in allogeneic immune reactions and non-activated T cells. J Trace Elem Med Biol 50:482\u2013488","journal-title":"J Trace Elem Med Biol"},{"key":"10755_CR179","doi-asserted-by":"publisher","DOI":"10.3389\/fnut.2024.1385591","author":"D Jin","year":"2024","unstructured":"Jin D, Wei X, He Y, Zhong L, Lu H, Lan J et al (2024) The nutritional roles of zinc for immune system and COVID-19 patients. Front Nutr. https:\/\/doi.org\/10.3389\/fnut.2024.1385591","journal-title":"Front Nutr"},{"issue":"7","key":"10755_CR180","doi-asserted-by":"publisher","first-page":"676","DOI":"10.3390\/nu4070676","volume":"4","author":"M Foster","year":"2012","unstructured":"Foster M, Samman S (2012) Zinc and regulation of inflammatory cytokines: implications for cardiometabolic disease. Nutrients 4(7):676\u2013694","journal-title":"Nutrients"},{"issue":"2\u20133","key":"10755_CR181","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1016\/S0168-6445(03)00055-X","volume":"27","author":"SC Andrews","year":"2003","unstructured":"Andrews SC, Robinson AK, Rodr\u00edguez-Qui\u00f1ones F (2003) Bacterial iron homeostasis. FEMS Microbiol Rev 27(2\u20133):215\u2013237","journal-title":"FEMS Microbiol Rev"},{"issue":"5","key":"10755_CR182","doi-asserted-by":"publisher","first-page":"637","DOI":"10.1039\/b906679a","volume":"27","author":"RC Hider","year":"2010","unstructured":"Hider RC, Kong X (2010) Chemistry and biology of siderophores. Nat Prod Rep 27(5):637\u2013657","journal-title":"Nat Prod Rep"},{"issue":"3","key":"10755_CR183","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1038\/s41570-023-00463-4","volume":"7","author":"A Frei","year":"2023","unstructured":"Frei A, Verderosa AD, Elliott AG, Zuegg J, Blaskovich MAT (2023) Metals to combat antimicrobial resistance. Nat Rev Chem 7(3):202\u2013224","journal-title":"Nat Rev Chem"},{"issue":"Suppl 1","key":"10755_CR184","doi-asserted-by":"publisher","first-page":"i3","DOI":"10.1093\/ndtplus\/sfr163","volume":"5","author":"W Jahnen-Dechent","year":"2012","unstructured":"Jahnen-Dechent W, Ketteler M (2012) Magnesium basics. Clin Kidney J 5(Suppl 1):i3\u2013i14","journal-title":"Clin Kidney J"},{"issue":"3","key":"10755_CR185","doi-asserted-by":"publisher","first-page":"378s","DOI":"10.3945\/an.112.003483","volume":"4","author":"SL Volpe","year":"2013","unstructured":"Volpe SL (2013) Magnesium in disease prevention and overall health. Adv Nutr 4(3):378s-s383","journal-title":"Adv Nutr"},{"issue":"2\u20133","key":"10755_CR186","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/S0925-4439(00)00018-1","volume":"1501","author":"C Malpuech-Brug\u00e8re","year":"2000","unstructured":"Malpuech-Brug\u00e8re C, Nowacki W, Daveau M, Gueux E, Linard C, Rock E et al (2000) Inflammatory response following acute magnesium deficiency in the rat. Biochim Biophys Acta 1501(2\u20133):91\u201398","journal-title":"Biochim Biophys Acta"},{"issue":"1","key":"10755_CR187","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1111\/nyas.13145","volume":"1372","author":"HK Biesalski","year":"2016","unstructured":"Biesalski HK (2016) Nutrition meets the microbiome: micronutrients and the microbiota. Ann N Y Acad Sci 1372(1):53\u201364","journal-title":"Ann N Y Acad Sci"},{"key":"10755_CR188","doi-asserted-by":"publisher","DOI":"10.3390\/nu14030644","author":"C Weyh","year":"2022","unstructured":"Weyh C, Kr\u00fcger K, Peeling P, Castell L (2022) The role of minerals in the optimal functioning of the immune system. Nutrients. https:\/\/doi.org\/10.3390\/nu14030644","journal-title":"Nutrients"},{"key":"10755_CR189","doi-asserted-by":"crossref","unstructured":"Maggini S (2010) Vitamins and minerals: contribution to immune function and health. In: Watson RR, Zibadi S, Preedy VR (eds) Dietary components and immune function. Humana Press, Totowa, NJ, pp 227\u2013252","DOI":"10.1007\/978-1-60761-061-8_13"},{"key":"10755_CR190","doi-asserted-by":"publisher","DOI":"10.1016\/j.bioflm.2023.100171","volume":"7","author":"GJ Jeong","year":"2024","unstructured":"Jeong GJ, Khan F, Tabassum N, Kim YM (2024) Alteration of oral microbial biofilms by sweeteners. Biofilm 7:100171","journal-title":"Biofilm"},{"key":"10755_CR191","doi-asserted-by":"publisher","DOI":"10.3390\/molecules28020631","author":"X Zhou","year":"2023","unstructured":"Zhou X, Qiao K, Wu H, Zhang Y (2023) The impact of food additives on the abundance and composition of gut microbiota. Molecules. https:\/\/doi.org\/10.3390\/molecules28020631","journal-title":"Molecules"},{"key":"10755_CR192","doi-asserted-by":"publisher","first-page":"295","DOI":"10.1016\/j.tifs.2020.03.006","volume":"99","author":"Y Cao","year":"2020","unstructured":"Cao Y, Liu H, Qin N, Ren X, Zhu B, Xia X (2020) Impact of food additives on the composition and function of gut microbiota: a review. Trends Food Sci Technol 99:295\u2013310","journal-title":"Trends Food Sci Technol"},{"issue":"1","key":"10755_CR193","doi-asserted-by":"publisher","DOI":"10.15252\/emmm.202216397","volume":"15","author":"R de Dios","year":"2023","unstructured":"de Dios R, Proctor CR, Maslova E, Dzalbe S, Rudolph CJ, McCarthy RR (2023) Artificial sweeteners inhibit multidrug-resistant pathogen growth and potentiate antibiotic activity. EMBO Mol Med 15(1):e16397","journal-title":"EMBO Mol Med"},{"issue":"2","key":"10755_CR194","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1177\/1091581819898396","volume":"39","author":"LL Jiang","year":"2020","unstructured":"Jiang LL, Li K, Yan DL, Yang MF, Ma L, Xie LZ (2020) Toxicity assessment of 4 azo dyes in zebrafish embryos. Int J Toxicol 39(2):115\u2013123","journal-title":"Int J Toxicol"},{"issue":"1","key":"10755_CR195","doi-asserted-by":"publisher","DOI":"10.1186\/s12940-022-00849-9","volume":"21","author":"MD Miller","year":"2022","unstructured":"Miller MD, Steinmaus C, Golub MS, Castorina R, Thilakartne R, Bradman A et al (2022) Potential impacts of synthetic food dyes on activity and attention in children: a review of the human and animal evidence. Environ Health 21(1):45","journal-title":"Environ Health"},{"key":"10755_CR196","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquatox.2021.105998","volume":"241","author":"L Wu","year":"2021","unstructured":"Wu L, Lv X, Zhang Y, Xin Q, Zou Y, Li X (2021) Tartrazine exposure results in histological damage, oxidative stress, immune disorders and gut microbiota dysbiosis in juvenile crucian carp (Carassius carassius). Aquat Toxicol 241:105998","journal-title":"Aquat Toxicol"},{"issue":"1","key":"10755_CR197","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1016\/j.fshw.2021.07.016","volume":"11","author":"J Xu","year":"2022","unstructured":"Xu J, Tang M, Liu Y, Xu J, Xu X (2022) Safety assessment of monosodium glutamate based on intestinal function and flora in mice. Food Sci Hum Wellness 11(1):155\u2013164","journal-title":"Food Sci Hum Wellness"},{"key":"10755_CR198","doi-asserted-by":"publisher","DOI":"10.3389\/fnut.2023.1054555","author":"M Radovanovic","year":"2023","unstructured":"Radovanovic M, Kekic D, Gajic I, Kabic J, Jovicevic M, Kekic N et al (2023) Potential influence of antimicrobial resistance gene content in probiotic bacteria on the gut resistome ecosystems. Front Nutr. https:\/\/doi.org\/10.3389\/fnut.2023.1054555","journal-title":"Front Nutr"},{"key":"10755_CR199","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S413416","author":"HA Habteweld","year":"2023","unstructured":"Habteweld HA, Asfaw T (2023) Novel dietary approach with probiotics, prebiotics, and synbiotics to mitigate antimicrobial resistance and subsequent out marketplace of antimicrobial agents: a review. Infect Drug Resist. https:\/\/doi.org\/10.2147\/IDR.S413416","journal-title":"Infect Drug Resist"},{"issue":"3","key":"10755_CR200","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12030550","volume":"12","author":"JWF Wu-Wu","year":"2023","unstructured":"Wu-Wu JWF, Guadamuz-Mayorga C, Oviedo-Cerdas D, Zamora WJ (2023) Antibiotic resistance and food safety: perspectives on new technologies and molecules for microbial control in the food industry. Antibiotics 12(3):550","journal-title":"Antibiotics"},{"issue":"5","key":"10755_CR201","doi-asserted-by":"publisher","first-page":"833","DOI":"10.1111\/febs.15217","volume":"287","author":"P Illiano","year":"2020","unstructured":"Illiano P, Brambilla R, Parolini C (2020) The mutual interplay of gut microbiota, diet and human disease. FEBS J 287(5):833\u2013855","journal-title":"FEBS J"},{"key":"10755_CR202","doi-asserted-by":"publisher","DOI":"10.1128\/msystems.00115-21","author":"A Oliver","year":"2021","unstructured":"Oliver A, Chase AB, Weihe C, Orchanian SB, Riedel SF, Hendrickson CL et al (2021) High-fiber, whole-food dietary intervention alters the human gut microbiome but not fecal short-chain fatty acids. mSystems. https:\/\/doi.org\/10.1128\/msystems.00115-21","journal-title":"mSystems"},{"key":"10755_CR203","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10122507","author":"J Fu","year":"2022","unstructured":"Fu J, Zheng Y, Gao Y, Xu W (2022) Dietary fiber intake and gut microbiota in human health. Microorganisms. https:\/\/doi.org\/10.3390\/microorganisms10122507","journal-title":"Microorganisms"},{"issue":"4","key":"10755_CR204","doi-asserted-by":"publisher","first-page":"928","DOI":"10.1093\/ajcn\/nqac175","volume":"116","author":"B Seethaler","year":"2022","unstructured":"Seethaler B, Nguyen NK, Basrai M, Kiechle M, Walter J, Delzenne NM et al (2022) Short-chain fatty acids are key mediators of the favorable effects of the Mediterranean diet on intestinal barrier integrity: data from the randomized controlled LIBRE trial. Am J Clin Nutr 116(4):928\u2013942","journal-title":"Am J Clin Nutr"},{"issue":"5","key":"10755_CR205","doi-asserted-by":"publisher","first-page":"1655","DOI":"10.3390\/nu13051655","volume":"13","author":"AQ Cronin","year":"2021","unstructured":"Cronin AQ, Joyce SA, O\u2019Toole PW, O\u2019Connor EM (2021) Dietary fibre modulates the gut microbiota. Nutrients 13(5):1655","journal-title":"Nutrients"},{"issue":"1","key":"10755_CR206","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-021-00921-y","volume":"13","author":"W Ma","year":"2021","unstructured":"Ma W, Nguyen LH, Song M, Wang DD, Franzosa EA, Cao Y et al (2021) Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men. Genome Med 13(1):102","journal-title":"Genome Med"},{"issue":"7","key":"10755_CR207","doi-asserted-by":"publisher","first-page":"1258","DOI":"10.1136\/gutjnl-2019-320438","volume":"69","author":"V Meslier","year":"2020","unstructured":"Meslier V, Laiola M, De Filippis F, Roume H, Quinquis B, Giacco R et al (2020) Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake. Gut 69(7):1258\u20131268","journal-title":"Gut"},{"issue":"10","key":"10755_CR208","doi-asserted-by":"publisher","first-page":"1569","DOI":"10.1093\/ecco-jcc\/jjad073","volume":"17","author":"N Haskey","year":"2023","unstructured":"Haskey N, Estaki M, Ye J, Shim RK, Singh S, Dieleman LA et al (2023) A mediterranean diet pattern improves intestinal inflammation concomitant with reshaping of the bacteriome in ulcerative colitis: a randomised controlled trial. J Crohns Colitis 17(10):1569\u20131578","journal-title":"J Crohns Colitis"},{"issue":"1","key":"10755_CR209","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-022-01015-z","volume":"14","author":"E Rinott","year":"2022","unstructured":"Rinott E, Meir AY, Tsaban G, Zelicha H, Kaplan A, Knights D et al (2022) The effects of the Green-Mediterranean diet on cardiometabolic health are linked to gut microbiome modifications: a randomized controlled trial. Genome Med 14(1):29","journal-title":"Genome Med"},{"issue":"7","key":"10755_CR210","doi-asserted-by":"publisher","first-page":"1218","DOI":"10.1136\/gutjnl-2019-319654","volume":"69","author":"TS Ghosh","year":"2020","unstructured":"Ghosh TS, Rampelli S, Jeffery IB, Santoro A, Neto M, Capri M et al (2020) Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries. Gut 69(7):1218\u20131228","journal-title":"Gut"},{"issue":"8","key":"10755_CR211","doi-asserted-by":"publisher","DOI":"10.3390\/nu13082638","volume":"13","author":"C Barber","year":"2021","unstructured":"Barber C, Mego M, Sabater C, Vallejo F, Bendezu RA, Masihy M et al (2021) Differential effects of western and mediterranean-type diets on gut microbiota: a metagenomics and metabolomics approach. Nutrients 13(8):2638","journal-title":"Nutrients"},{"issue":"1","key":"10755_CR212","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-71592-9","volume":"10","author":"Y Hasegawa","year":"2020","unstructured":"Hasegawa Y, Chen S-Y, Sheng L, Jena PK, Kalanetra KM, Mills DA et al (2020) Long-term effects of Western diet consumption in male and female mice. Sci Rep 10(1):14686","journal-title":"Sci Rep"},{"issue":"6","key":"10755_CR213","doi-asserted-by":"publisher","first-page":"6ra14","DOI":"10.1126\/scitranslmed.3000322","volume":"1","author":"PJ Turnbaugh","year":"2009","unstructured":"Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1(6):6ra14-616ra","journal-title":"Sci Transl Med"},{"issue":"2","key":"10755_CR214","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1530\/JOE-16-0578","volume":"232","author":"JS Johnson","year":"2016","unstructured":"Johnson JS, Opiyo MN, Thomson M, Gharbi K, Seckl JR, Heger A et al (2016) 11\u03b2-hydroxysteroid dehydrogenase-1 deficiency alters the gut microbiome response to Western diet. J Endocrinol 232(2):273","journal-title":"J Endocrinol"},{"issue":"1","key":"10755_CR215","doi-asserted-by":"publisher","DOI":"10.1038\/s41522-018-0073-2","volume":"5","author":"M Lindefeldt","year":"2019","unstructured":"Lindefeldt M, Eng A, Darban H, Bjerkner A, Zetterstr\u00f6m CK, Allander T et al (2019) The ketogenic diet influences taxonomic and functional composition of the gut microbiota in children with severe epilepsy. NPJ Biofilms Microbiomes 5(1):5","journal-title":"NPJ Biofilms Microbiomes"},{"issue":"6","key":"10755_CR216","doi-asserted-by":"publisher","DOI":"10.3390\/nu14061199","volume":"14","author":"K Nakamura","year":"2022","unstructured":"Nakamura K, Hagihara K, Nagai N, Egashira R, Takeuchi M, Nakano M et al (2022) Ketogenic effects of multiple doses of a medium chain triglycerides enriched ketogenic formula in healthy men under the ketogenic diet: a randomized, double-blinded, placebo-controlled study. Nutrients 14(6):1199","journal-title":"Nutrients"},{"key":"10755_CR217","doi-asserted-by":"crossref","unstructured":"Ang QY, Alexander M, Newman JC, Tian Y, Cai J, Upadhyay V et al (2020) Ketogenic diets alter the gut microbiome resulting in decreased intestinal Th17 cells. Cell 181(6):1263\u201375.e16","DOI":"10.1016\/j.cell.2020.04.027"},{"issue":"3","key":"10755_CR218","doi-asserted-by":"publisher","first-page":"322","DOI":"10.1017\/S000711451800329X","volume":"121","author":"A Genoni","year":"2019","unstructured":"Genoni A, Lo J, Lyons-Wall P, Boyce MC, Christophersen CT, Bird A et al (2019) A paleolithic diet lowers resistant starch intake but does not affect serum trimethylamine-N-oxide concentrations in healthy women. Br J Nutr 121(3):322\u2013329","journal-title":"Br J Nutr"},{"issue":"5","key":"10755_CR219","doi-asserted-by":"publisher","first-page":"1845","DOI":"10.1007\/s00394-019-02036-y","volume":"59","author":"A Genoni","year":"2020","unstructured":"Genoni A, Christophersen CT, Lo J, Coghlan M, Boyce MC, Bird AR et al (2020) Long-term paleolithic diet is associated with lower resistant starch intake, different gut microbiota composition and increased serum TMAO concentrations. Eur J Nutr 59(5):1845\u20131858","journal-title":"Eur J Nutr"},{"issue":"8","key":"10755_CR220","doi-asserted-by":"publisher","first-page":"e0220619","DOI":"10.1371\/journal.pone.0220619","volume":"14","author":"M Barone","year":"2019","unstructured":"Barone M, Turroni S, Rampelli S, Soverini M, D\u2019Amico F, Biagi E et al (2019) Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context. PLoS ONE 14(8):e0220619","journal-title":"PLoS ONE"},{"key":"10755_CR221","doi-asserted-by":"publisher","DOI":"10.1007\/s00394-021-02696-9","author":"V de la O","year":"2022","unstructured":"de la O V, Zazpe I, Goni L, Santiago S, Mart\u00edn-Calvo N, Bes-Rastrollo M et al (2022) A score appraising Paleolithic diet and the risk of cardiovascular disease in a Mediterranean prospective cohort. Eur J Nutr. https:\/\/doi.org\/10.1007\/s00394-021-02696-9","journal-title":"Eur J Nutr"},{"key":"10755_CR222","doi-asserted-by":"publisher","DOI":"10.3389\/fnut.2021.783302","volume":"8","author":"M Prochazkova","year":"2022","unstructured":"Prochazkova M, Budinska E, Kuzma M, Pelantova H, Hradecky J, Heczkova M et al (2022) Vegan diet is associated with favorable effects on the metabolic performance of intestinal microbiota: a cross-sectional multi-omics study. Front Nutr 8:783302","journal-title":"Front Nutr"},{"issue":"1","key":"10755_CR223","doi-asserted-by":"publisher","DOI":"10.1186\/s12916-022-02402-4","volume":"20","author":"Z Miao","year":"2022","unstructured":"Miao Z, Du W, Xiao C, Su C, Gou W, Shen L et al (2022) Gut microbiota signatures of long-term and short-term plant-based dietary pattern and cardiometabolic health: a prospective cohort study. BMC Med 20(1):204","journal-title":"BMC Med"},{"issue":"10","key":"10755_CR224","doi-asserted-by":"publisher","DOI":"10.3390\/nu12102917","volume":"12","author":"H Kahleova","year":"2020","unstructured":"Kahleova H, Rembert E, Alwarith J, Yonas WN, Tura A, Holubkov R et al (2020) Effects of a low-fat vegan diet on gut microbiota in overweight individuals and relationships with body weight, body composition, and insulin sensitivity. A randomized clinical trial. Nutrients 12(10):2917","journal-title":"Nutrients"},{"issue":"2","key":"10755_CR225","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1038\/s41591-023-02761-2","volume":"30","author":"VM Link","year":"2024","unstructured":"Link VM, Subramanian P, Cheung F, Han KL, Stacy A, Chi L et al (2024) Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. Nat Med 30(2):560\u2013572","journal-title":"Nat Med"},{"key":"10755_CR226","doi-asserted-by":"publisher","DOI":"10.1016\/j.cct.2022.106968","volume":"123","author":"TL Carson","year":"2022","unstructured":"Carson TL, Buro AW, Miller D, Pe\u00f1a A, Ard JD, Lampe JW et al (2022) Rationale and study protocol for a randomized controlled feeding study to determine the structural- and functional-level effects of diet-specific interventions on the gut microbiota of non-Hispanic black and white adults. Contemp Clin Trials 123:106968","journal-title":"Contemp Clin Trials"},{"key":"10755_CR227","unstructured":"Clark RL (2018) Impact of a fruit and vegetable diet intervention in young adults with metabolic syndrome on behavior and gut microbiome. Graduate Theses, Dissertations, and Problem Reports, p 5370. https:\/\/researchrepository.wvu.edu\/etd\/5370"},{"issue":"2","key":"10755_CR228","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1080\/09637486.2023.2294685","volume":"75","author":"Z Diao","year":"2024","unstructured":"Diao Z, Molludi J, Latef Fateh H, Moradi S (2024) Comparison of the low-calorie DASH diet and a low-calorie diet on serum TMAO concentrations and gut microbiota composition of adults with overweight\/obesity: a randomized control trial. Int J Food Sci Nutr 75(2):207\u2013220","journal-title":"Int J Food Sci Nutr"},{"issue":"5","key":"10755_CR229","doi-asserted-by":"publisher","first-page":"955","DOI":"10.1093\/eurpub\/cky113","volume":"28","author":"R Martinez-Lacoba","year":"2018","unstructured":"Martinez-Lacoba R, Pardo-Garcia I, Amo-Saus E, Escribano-Sotos F (2018) Mediterranean diet and health outcomes: a systematic meta-review. Eur J Public Health 28(5):955\u2013961","journal-title":"Eur J Public Health"},{"issue":"11","key":"10755_CR230","doi-asserted-by":"publisher","first-page":"1812","DOI":"10.1136\/gutjnl-2015-309957","volume":"65","author":"F De Filippis","year":"2016","unstructured":"De Filippis F, Pellegrini N, Vannini L, Jeffery IB, La Storia A, Laghi L et al (2016) High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome. Gut 65(11):1812\u20131821","journal-title":"Gut"},{"issue":"5","key":"10755_CR231","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1016\/j.aller.2016.08.006","volume":"45","author":"FM Calatayud","year":"2017","unstructured":"Calatayud FM, Calatayud B, Gallego JG, Gonz\u00e1lez-Mart\u00edn C, Alguacil LF (2017) Effects of Mediterranean diet in patients with recurring colds and frequent complications. Allergol Immunopathol (Madr) 45(5):417\u2013424","journal-title":"Allergol Immunopathol (Madr)"},{"issue":"1","key":"10755_CR232","first-page":"e34214","volume":"15","author":"A Singh","year":"2023","unstructured":"Singh A, Singh D (2023) The Paleolithic diet. Cureus 15(1):e34214","journal-title":"Cureus"},{"issue":"3","key":"10755_CR233","first-page":"233","volume":"118","author":"J Clem","year":"2021","unstructured":"Clem J, Barthel B (2021) A look at plant-based diets. Mo Med 118(3):233\u2013238","journal-title":"Mo Med"},{"issue":"5","key":"10755_CR234","doi-asserted-by":"publisher","first-page":"702","DOI":"10.1016\/j.ijantimicag.2018.07.023","volume":"52","author":"C Losasso","year":"2018","unstructured":"Losasso C, Di Cesare A, Mastrorilli E, Patuzzi I, Cibin V, Eckert EM et al (2018) Assessing antimicrobial resistance gene load in vegan, vegetarian and omnivore human gut microbiota. Int J Antimicrob Agents 52(5):702\u2013705","journal-title":"Int J Antimicrob Agents"},{"key":"10755_CR235","doi-asserted-by":"publisher","DOI":"10.1002\/mnfr.201601098","author":"V Milanovi\u0107","year":"2017","unstructured":"Milanovi\u0107 V, Osimani A, Aquilanti L, Tavoletti S, Garofalo C, Polverigiani S et al (2017) Occurrence of antibiotic resistance genes in the fecal DNA of healthy omnivores, ovo-lacto vegetarians and vegans. Mol Nutr Food Res. https:\/\/doi.org\/10.1002\/mnfr.201601098","journal-title":"Mol Nutr Food Res"},{"key":"10755_CR236","doi-asserted-by":"publisher","DOI":"10.3390\/genes11091088","author":"V Milanovi\u0107","year":"2020","unstructured":"Milanovi\u0107 V, Aquilanti L, Tavoletti S, Garofalo C, Osimani A, De Filippis F et al (2020) Distribution of antibiotic resistance genes in the saliva of healthy omnivores, ovo-lacto-vegetarians, and vegans. Genes. https:\/\/doi.org\/10.3390\/genes11091088","journal-title":"Genes"},{"issue":"2","key":"10755_CR237","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1111\/nure.12001","volume":"71","author":"R Pawlak","year":"2013","unstructured":"Pawlak R, Parrott SJ, Raj S, Cullum-Dugan D, Lucus D (2013) How prevalent is vitamin B 12 deficiency among vegetarians? Nutr Rev 71(2):110\u2013117","journal-title":"Nutr Rev"},{"issue":"18","key":"10755_CR238","doi-asserted-by":"publisher","first-page":"5701","DOI":"10.1128\/AEM.01682-13","volume":"79","author":"R Marti","year":"2013","unstructured":"Marti R, Scott A, Tien Y-C, Murray R, Sabourin L, Zhang Y et al (2013) Impact of manure fertilization on the abundance of antibiotic-resistant bacteria and frequency of detection of antibiotic resistance genes in soil and on vegetables at harvest. Appl Environ Microbiol 79(18):5701\u20135709","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"10755_CR239","doi-asserted-by":"publisher","DOI":"10.1186\/s12974-019-1611-4","volume":"16","author":"M Morshedi","year":"2019","unstructured":"Morshedi M, Hashemi R, Moazzen S, Sahebkar A, Hosseinifard ES (2019) Immunomodulatory and anti-inflammatory effects of probiotics in multiple sclerosis: a systematic review. J Neuroinflammation 16(1):231","journal-title":"J Neuroinflammation"},{"issue":"6","key":"10755_CR240","doi-asserted-by":"publisher","DOI":"10.1016\/j.heliyon.2022.e09725","volume":"8","author":"BA Tegegne","year":"2022","unstructured":"Tegegne BA, Kebede B (2022) Probiotics, their prophylactic and therapeutic applications in human health development: a review of the literature. Heliyon 8(6):e09725","journal-title":"Heliyon"},{"issue":"2","key":"10755_CR241","doi-asserted-by":"publisher","DOI":"10.1016\/j.afres.2022.100185","volume":"2","author":"TK Das","year":"2022","unstructured":"Das TK, Pradhan S, Chakrabarti S, Mondal KC, Ghosh K (2022) Current status of probiotic and related health benefits. Appl Food Res 2(2):100185","journal-title":"Appl Food Res"},{"issue":"4","key":"10755_CR242","doi-asserted-by":"publisher","DOI":"10.1002\/imt2.70048","volume":"4","author":"C Wang","year":"2025","unstructured":"Wang C, Liu Z, Zhou T, Wu J, Feng F, Wang S et al (2025) Gut microbiota\u2010derived butyric acid regulates calcific aortic valve disease pathogenesis by modulating GAPDH lactylation and butyrylation. iMeta e70048. https:\/\/doi.org\/10.1002\/imt2.70048","journal-title":"iMeta"},{"key":"10755_CR243","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1016\/j.jpsychires.2024.09.009","volume":"179","author":"S Soleimanpour","year":"2024","unstructured":"Soleimanpour S, Abavisani M, Khoshrou A, Sahebkar A (2024) Probiotics for autism spectrum disorder: an updated systematic review and meta-analysis of effects on symptoms. J Psychiatr Res 179:92\u2013104","journal-title":"J Psychiatr Res"},{"key":"10755_CR244","doi-asserted-by":"publisher","DOI":"10.1016\/j.phanu.2025.100435","volume":"31","author":"M Abavisani","year":"2025","unstructured":"Abavisani M, Foroushan SK, Kesharwani P, Sahebkar A (2025) The frontier of health: exploring therapeutic potentials of the microbiome. PharmaNutrition 31:100435","journal-title":"PharmaNutrition"},{"issue":"6","key":"10755_CR245","doi-asserted-by":"publisher","first-page":"1406","DOI":"10.1016\/j.cell.2018.08.047","volume":"174","author":"J Suez","year":"2018","unstructured":"Suez J, Zmora N, Zilberman-Schapira G, Mor U, Dori-Bachash M, Bashiardes S et al (2018) Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT. Cell. 174(6):1406\u20131423 (e16)","journal-title":"Cell."},{"issue":"1","key":"10755_CR246","doi-asserted-by":"publisher","first-page":"262","DOI":"10.1186\/s12916-023-02961-0","volume":"21","author":"AJ \u00c9li\u00e1s","year":"2023","unstructured":"\u00c9li\u00e1s AJ, Barna V, Patoni C, Demeter D, Veres DS, Bunduc S et al (2023) Probiotic supplementation during antibiotic treatment is unjustified in maintaining the gut microbiome diversity: a systematic review and meta-analysis. BMC Med 21(1):262","journal-title":"BMC Med"},{"issue":"9","key":"10755_CR247","doi-asserted-by":"publisher","first-page":"704","DOI":"10.1001\/archinternmed.2012.777","volume":"172","author":"G ter Riet","year":"2012","unstructured":"ter Riet G, Nys S, van der Wal WM, de Borgie CA, de Reijke TM, Prins JM et al (2012) Lactobacilli vs antibiotics to prevent urinary tract infections: a randomized, double-blind, noninferiority trial in postmenopausal women. Arch Intern Med 172(9):704\u2013712","journal-title":"Arch Intern Med"},{"issue":"9","key":"10755_CR248","doi-asserted-by":"publisher","first-page":"454","DOI":"10.5694\/j.1326-5377.2007.tb00995.x","volume":"186","author":"KJ Manley","year":"2007","unstructured":"Manley KJ, Fraenkel MB, Mayall BC, Power DA (2007) Probiotic treatment of vancomycin-resistant enterococci: a randomised controlled trial. Med J Aust 186(9):454\u2013457","journal-title":"Med J Aust"},{"issue":"Pt 5","key":"10755_CR249","doi-asserted-by":"publisher","first-page":"663","DOI":"10.1099\/jmm.0.47615-0","volume":"58","author":"A Engelbrektson","year":"2009","unstructured":"Engelbrektson A, Korzenik JR, Pittler A, Sanders ME, Klaenhammer TR, Leyer G et al (2009) Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy. J Med Microbiol 58(Pt 5):663\u2013670","journal-title":"J Med Microbiol"},{"issue":"1","key":"10755_CR250","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1016\/j.ijantimicag.2005.04.004","volume":"26","author":"SF Plummer","year":"2005","unstructured":"Plummer SF, Garaiova I, Sarvotham T, Cottrell SL, Le Scouiller S, Weaver MA et al (2005) Effects of probiotics on the composition of the intestinal microbiota following antibiotic therapy. Int J Antimicrob Agents 26(1):69\u201374","journal-title":"Int J Antimicrob Agents"},{"key":"10755_CR251","doi-asserted-by":"publisher","DOI":"10.3389\/fpubh.2020.578089","volume":"8","author":"G Wie\u00ebrs","year":"2020","unstructured":"Wie\u00ebrs G, Verbelen V, Van Den Driessche M, Melnik E, Vanheule G, Marot JC et al (2020) Do probiotics during in-hospital antibiotic treatment prevent colonization of gut microbiota with multi-drug-resistant bacteria? A randomized placebo-controlled trial comparing Saccharomyces to a mixture of Lactobacillus, Bifidobacterium, and Saccharomyces. Front Public Health 8:578089","journal-title":"Front Public Health"},{"key":"10755_CR252","doi-asserted-by":"publisher","unstructured":"Choi E, Yang J, Ji G-E, Park MS, Seong Y, Oh SW et al (2021) Probiotic supplementation reduces systemic inflammation in dialysis patients: the effect on circulating regulatory T-cells and pro-inflammatory monocytes. Research Square. https:\/\/doi.org\/10.21203\/rs.3.rs-140039\/v1","DOI":"10.21203\/rs.3.rs-140039\/v1"},{"issue":"10","key":"10755_CR253","doi-asserted-by":"publisher","first-page":"5092","DOI":"10.1111\/jocd.14971","volume":"21","author":"S Sathikulpakdee","year":"2022","unstructured":"Sathikulpakdee S, Kanokrungsee S, Vitheejongjaroen P, Kamanamool N, Udompataikul M, Taweechotipatr M (2022) Efficacy of probiotic-derived lotion from Lactobacillus paracasei MSMC 39\u20131 in mild to moderate acne vulgaris, randomized controlled trial. J Cosmet Dermatol 21(10):5092\u20135097","journal-title":"J Cosmet Dermatol"},{"issue":"3","key":"10755_CR254","doi-asserted-by":"publisher","first-page":"275","DOI":"10.4103\/jisppd.jisppd_270_21","volume":"39","author":"V Duraisamy","year":"2021","unstructured":"Duraisamy V, Geethapriya PR, Bharath C, Niveditha RS, John JB (2021) Role of probiotics and synbiotics on inhibiting Streptococcus mutans level in saliva of children: a randomized controlled trial. J Indian Soc Pedod Prev Dent 39(3):275\u2013278","journal-title":"J Indian Soc Pedod Prev Dent"},{"issue":"1","key":"10755_CR255","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-46116-y","volume":"15","author":"M Ni Lochlainn","year":"2024","unstructured":"Ni Lochlainn M, Bowyer RCE, Moll JM, Garc\u00eda MP, Wadge S, Baleanu A-F et al (2024) Effect of gut microbiome modulation on muscle function and cognition: the PROMOTe randomised controlled trial. Nat Commun 15(1):1859","journal-title":"Nat Commun"},{"issue":"3","key":"10755_CR256","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1080\/01635581.2015.1004734","volume":"67","author":"HM Sommacal","year":"2015","unstructured":"Sommacal HM, Bersch VP, Vitola SP, Osvaldt AB (2015) Perioperative synbiotics decrease postoperative complications in periampullary neoplasms: a randomized, double-blind clinical trial. Nutr Cancer 67(3):457\u2013462","journal-title":"Nutr Cancer"},{"issue":"12","key":"10755_CR257","doi-asserted-by":"publisher","first-page":"1264","DOI":"10.1002\/jhbp.1182","volume":"29","author":"S Mallick","year":"2022","unstructured":"Mallick S, Kathirvel M, Nair K, Durairaj MS, Varghese CT, Sivasankara Pillai Thankamony Amma B et al (2022) A randomized, double\u2010blinded, placebo\u2010controlled trial analyzing the effect of synbiotics on infectious complications following living donor liver transplant\u2014<scp>PREPRO<\/scp> trial. J Hepatobiliary Pancreat Sci 29(12):1264\u20131273","journal-title":"J Hepatobiliary Pancreat Sci"},{"key":"10755_CR258","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.nut.2018.06.004","volume":"58","author":"CB Polakowski","year":"2019","unstructured":"Polakowski CB, Kato M, Preti VB, Schieferdecker MEM, Ligocki Campos AC (2019) Impact of the preoperative use of synbiotics in colorectal cancer patients: a prospective, randomized, double-blind, placebo-controlled study. Nutrition 58:40\u201346","journal-title":"Nutrition"},{"key":"10755_CR259","doi-asserted-by":"publisher","DOI":"10.1093\/jambio\/lxae138","author":"C Zhang","year":"2024","unstructured":"Zhang C, Wang C, Dai J, Xiu Z (2024) The inhibition mechanism of co-cultured probiotics on biofilm formation of Klebsiella pneumoniae. J Appl Microbiol. https:\/\/doi.org\/10.1093\/jambio\/lxae138","journal-title":"J Appl Microbiol"},{"key":"10755_CR260","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.01983","volume":"7","author":"IC Imperial","year":"2016","unstructured":"Imperial IC, Ibana JA (2016) Addressing the antibiotic resistance problem with probiotics: reducing the risk of its double-edged sword effect. Front Microbiol 7:1983","journal-title":"Front Microbiol"},{"issue":"6","key":"10755_CR261","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1097\/NT.0000000000000512","volume":"56","author":"LG Snetselaar","year":"2021","unstructured":"Snetselaar LG, de Jesus JM, DeSilva DM, Stoody EE (2021) Dietary guidelines for Americans, 2020\u20132025: understanding the scientific process, guidelines, and key recommendations. Nutr Today 56(6):287\u2013295","journal-title":"Nutr Today"},{"issue":"12","key":"10755_CR262","doi-asserted-by":"publisher","DOI":"10.3390\/nu11122862","volume":"11","author":"ER Leeming","year":"2019","unstructured":"Leeming ER, Johnson AJ, Spector TD, Le Roy CI (2019) Effect of diet on the gut microbiota: rethinking intervention duration. Nutrients 11(12):2862","journal-title":"Nutrients"},{"key":"10755_CR263","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0090702","volume":"9","author":"K Korpela","year":"2014","unstructured":"Korpela K, Flint HJ, Johnstone AM, Lappi J, Poutanen K, Dewulf E et al (2014) Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals. PLoS ONE 9:e90702","journal-title":"PLoS ONE"},{"issue":"5","key":"10755_CR264","doi-asserted-by":"publisher","first-page":"526","DOI":"10.1038\/s41564-018-0143-5","volume":"3","author":"G Falony","year":"2018","unstructured":"Falony G, Vieira-Silva S, Raes J (2018) Richness and ecosystem development across faecal snapshots of the gut microbiota. Nat Microbiol 3(5):526\u2013528","journal-title":"Nat Microbiol"},{"issue":"2","key":"10755_CR265","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1016\/j.jneb.2016.10.017","volume":"49","author":"AS Ramirez","year":"2017","unstructured":"Ramirez AS, Rios LKD, Valdez Z, Estrada E, Ruiz A (2017) Bringing produce to the people: implementing a social marketing food access intervention in rural food deserts. J Nutr Educ Behav 49(2):166\u2013174 (e1)","journal-title":"J Nutr Educ Behav"},{"issue":"8","key":"10755_CR266","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.3001758","volume":"20","author":"J Li","year":"2022","unstructured":"Li J, George Markowitz RH, Brooks AW, Mallott EK, Leigh BA, Olszewski T et al (2022) Individuality and ethnicity eclipse a short-term dietary intervention in shaping microbiomes and viromes. PLoS Biol 20(8):e3001758","journal-title":"PLoS Biol"},{"issue":"1","key":"10755_CR267","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1093\/advances\/nmz086","volume":"11","author":"SH Adams","year":"2020","unstructured":"Adams SH, Anthony JC, Carvajal R, Chae L, Khoo CSH, Latulippe ME et al (2020) Perspective: guiding principles for the implementation of personalized nutrition approaches that benefit health and function. Adv Nutr 11(1):25\u201334","journal-title":"Adv Nutr"},{"issue":"5","key":"10755_CR268","doi-asserted-by":"publisher","first-page":"1450","DOI":"10.1093\/advances\/nmac075","volume":"13","author":"SM Gibbons","year":"2022","unstructured":"Gibbons SM, Gurry T, Lampe JW, Chakrabarti A, Dam V, Everard A et al (2022) Perspective: leveraging the gut microbiota to predict personalized responses to dietary, prebiotic, and probiotic interventions. Adv Nutr 13(5):1450\u20131461","journal-title":"Adv Nutr"},{"key":"10755_CR269","doi-asserted-by":"publisher","DOI":"10.1016\/j.crbiot.2024.100211","volume":"7","author":"M Abavisani","year":"2024","unstructured":"Abavisani M, Khoshrou A, Foroushan SK, Ebadpour N, Sahebkar A (2024) Deciphering the gut microbiome: the revolution of artificial intelligence in microbiota analysis and intervention. Curr Res Biotechnol 7:100211","journal-title":"Curr Res Biotechnol"},{"key":"10755_CR270","doi-asserted-by":"publisher","DOI":"10.3390\/nu17071260","author":"K Rouskas","year":"2025","unstructured":"Rouskas K, Guela M, Pantoura M, Pagkalos I, Hassapidou M, Lalama E et al (2025) The influence of an AI-driven personalized nutrition program on the human gut microbiome and its health implications. Nutrients. https:\/\/doi.org\/10.3390\/nu17071260","journal-title":"Nutrients"},{"key":"10755_CR271","doi-asserted-by":"publisher","DOI":"10.1016\/j.cej.2025.159546","volume":"505","author":"K Wang","year":"2025","unstructured":"Wang K, Li X, Huang K, Wu H, Tan M, Su W (2025) Dietary probiotic-derived extracellular vesicles as delivery systems of bioactive compounds to maintain intestinal homeostasis. Chem Eng J 505:159546","journal-title":"Chem Eng J"},{"key":"10755_CR272","doi-asserted-by":"publisher","DOI":"10.1093\/cdn\/nzac064.023","volume":"6","author":"G Pasinetti","year":"2022","unstructured":"Pasinetti G (2022) Synbiotic-derived metabolites reduce neuroinflammatory symptoms of Alzheimer\u2019s disease. Curr Dev Nutr 6:804","journal-title":"Curr Dev Nutr"}],"container-title":["Probiotics and Antimicrobial Proteins"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12602-025-10755-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s12602-025-10755-4","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12602-025-10755-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,14]],"date-time":"2026-05-14T10:05:14Z","timestamp":1778753114000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s12602-025-10755-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10,27]]},"references-count":272,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2026,4]]}},"alternative-id":["10755"],"URL":"https:\/\/doi.org\/10.1007\/s12602-025-10755-4","relation":{},"ISSN":["1867-1306","1867-1314"],"issn-type":[{"value":"1867-1306","type":"print"},{"value":"1867-1314","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,10,27]]},"assertion":[{"value":"28 May 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 August 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 October 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical Approval"}},{"value":"The authors declare no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interests"}}]}}