{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,3]],"date-time":"2026-10-03T22:32:58Z","timestamp":1791066778944,"version":"4.1.0"},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2019,10,24]],"date-time":"2019-10-24T00:00:00Z","timestamp":1571875200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2019,10,24]],"date-time":"2019-10-24T00:00:00Z","timestamp":1571875200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Braz J Microbiol"],"published-print":{"date-parts":[[2020,9]]},"DOI":"10.1007\/s42770-019-00177-0","type":"journal-article","created":{"date-parts":[[2019,10,25]],"date-time":"2019-10-25T18:54:28Z","timestamp":1572029668000},"page":"1327-1332","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Genomic comparison of Clostridium chauvoei isolates from classical and visceral clinical manifestation"],"prefix":"10.1007","volume":"51","author":[{"given":"Rosangela Estel","family":"Ziech","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Franciele Maboni","family":"Siqueira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samuel","family":"Cibulski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Silvia","family":"De Carli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Helton Fernandes","family":"dos Santos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rafael Almeida","family":"Fighera","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joachim","family":"Frey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Agueda Castagna","family":"de Vargas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2019,10,24]]},"reference":[{"key":"177_CR1","unstructured":"Quinn PJ, Markey BK, Leonard FC, Fitz Patrick ES, Fanning S, Hartigan PJ (2011) Veterinary microbiology and microbial disease. Vol Second, Ames"},{"key":"177_CR2","unstructured":"Jubb KVF, Kennedy PC, Palmer N (1991) Pathology of domestic animals, vol 2, 4th edn, San Diego"},{"issue":"1","key":"177_CR3","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1016\/j.cvfa.2011.12.006","volume":"28","author":"F Uzal","year":"2012","unstructured":"Uzal F (2012) a. Evidence-based medicine concerning efficacy of vaccination against Clostridium chauvoei infection in cattle. Vet Clin N Am Food Anim Pract 28(1):71\u201377, viii. https:\/\/doi.org\/10.1016\/j.cvfa.2011.12.006","journal-title":"Vet Clin N Am Food Anim Pract"},{"issue":"3","key":"177_CR4","doi-asserted-by":"publisher","first-page":"1030","DOI":"10.1590\/S1517-83822012000300027","volume":"43","author":"FM Salvarani","year":"2012","unstructured":"Salvarani FM, Silva ROS, Pires PS et al (2012) Antimicrobial susceptibility of Clostridium perfringens isolated from piglets with or without diarrhea in Brazil. Braz J Microbiol 43(3):1030\u20131033. https:\/\/doi.org\/10.1590\/S1517-83822012000300027","journal-title":"Braz J Microbiol"},{"key":"177_CR5","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1016\/j.anaerobe.2014.06.012","volume":"28","author":"ROS Silva","year":"2014","unstructured":"Silva ROS, D\u2019Elia ML, Tostes Teixeira \u00c9P et al (2014) Clostridium difficile and Clostridium perfringens from wild carnivore species in Brazil. Anaerobe 28:207\u2013211. https:\/\/doi.org\/10.1016\/j.anaerobe.2014.06.012","journal-title":"Anaerobe"},{"issue":"2","key":"177_CR6","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1590\/1808-1657v77p3312010","volume":"77","author":"RA De Assis","year":"2010","unstructured":"De Assis RA, Lobato FCF, Nascimento RAP et al (2010) Mionecroses clostridiais bovinas. Arq Inst Biol (Sao Paulo) 77(2):331\u2013334","journal-title":"Arq Inst Biol (Sao Paulo)"},{"key":"177_CR7","doi-asserted-by":"publisher","unstructured":"Casagrande RA, Sonne L, Neves MS et al (2015) Histopathological, immunohistochemical and biomolecular diagnosis of myocarditis due to Clostridium chauvoei in a bovine. Cienc Rural. https:\/\/doi.org\/10.1590\/0103-8478cr20141447","DOI":"10.1590\/0103-8478cr20141447"},{"issue":"5","key":"177_CR8","doi-asserted-by":"publisher","first-page":"612","DOI":"10.1177\/1040638717713796","volume":"29","author":"CC Abreu","year":"2017","unstructured":"Abreu CC, Edwards EE, Edwards JF et al (2017) Blackleg in cattle: A case report of fetal infection and a literature review. J Vet Diagn Investig 29(5):612\u2013621. https:\/\/doi.org\/10.1177\/1040638717713796","journal-title":"J Vet Diagn Investig"},{"issue":"4","key":"177_CR9","doi-asserted-by":"publisher","first-page":"384","DOI":"10.1016\/j.resmic.2014.10.013","volume":"166","author":"J Frey","year":"2015","unstructured":"Frey J, Falquet L (2015) Patho-genetics of Clostridium chauvoei. Res Microbiol 166(4):384\u2013392. https:\/\/doi.org\/10.1016\/j.resmic.2014.10.013","journal-title":"Res Microbiol"},{"issue":"June","key":"177_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2017.01054","volume":"8","author":"L Rychener","year":"2017","unstructured":"Rychener L, In-Albon S, Djordjevic SP et al (2017) Clostridium chauvoei, an evolutionary dead-end pathogen. Front Microbiol 8(June):1\u201313. https:\/\/doi.org\/10.3389\/fmicb.2017.01054","journal-title":"Front Microbiol"},{"issue":"3","key":"177_CR11","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1007\/s10142-006-0027-2","volume":"6","author":"TT Binnewies","year":"2006","unstructured":"Binnewies TT, Motro Y, Hallin PF et al (2006) Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics 6(3):165\u2013185. https:\/\/doi.org\/10.1007\/s10142-006-0027-2","journal-title":"Funct Integr Genomics"},{"issue":"5","key":"177_CR12","doi-asserted-by":"publisher","first-page":"472","DOI":"10.1016\/j.mib.2008.09.006","volume":"11","author":"H Tettelin","year":"2008","unstructured":"Tettelin H, Riley D, Cattuto C, Medini D (2008) Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol 11(5):472\u2013477. https:\/\/doi.org\/10.1016\/j.mib.2008.09.006","journal-title":"Curr Opin Microbiol"},{"issue":"March","key":"177_CR13","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1016\/j.meegid.2017.07.018","volume":"54","author":"P Thomas","year":"2017","unstructured":"Thomas P, Semmler T, Eichhorn I et al (2017) First report of two complete Clostridium chauvoei genome sequences and detailed in silico genome analysis. Infect Genet Evol 54(March):287\u2013298. https:\/\/doi.org\/10.1016\/j.meegid.2017.07.018","journal-title":"Infect Genet Evol"},{"key":"177_CR14","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1016\/S0378-1135(02)00002-0","volume":"86","author":"Y Sasaki","year":"2002","unstructured":"Sasaki Y, Kojima A, Aoki H (2002) Phylogenetic analysis and PCR detection of Clostridium chauvoei, Clostridium haemolyticum, Clostridium novyi types A and B, and Clostridium septicum based on the flagellin gene. Vet Microbiol 86:257\u2013267","journal-title":"Vet Microbiol"},{"issue":"14","key":"177_CR15","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","volume":"30","author":"T Seemann","year":"2014","unstructured":"Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30(14):2068\u20132069. https:\/\/doi.org\/10.1093\/bioinformatics\/btu153","journal-title":"Bioinformatics"},{"key":"177_CR16","doi-asserted-by":"publisher","unstructured":"Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12. https:\/\/doi.org\/10.1186\/1471-2164-12-402","DOI":"10.1186\/1471-2164-12-402"},{"key":"177_CR17","doi-asserted-by":"publisher","first-page":"e20","DOI":"10.7717\/peerj-cs.20","volume":"1","author":"S Davis","year":"2015","unstructured":"Davis S, Pettengill JB, Luo Y et al (2015) CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data. PeerJ Comput Sci 1:e20. https:\/\/doi.org\/10.7717\/peerj-cs.20","journal-title":"PeerJ Comput Sci"},{"key":"177_CR18","doi-asserted-by":"publisher","unstructured":"Bryant D, Bouckaert R, Felsenstein J, Rosenberg NA, Roychoudhury A (2012) Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis research article. 29(1998):1917\u20131932. https:\/\/doi.org\/10.1093\/molbev\/mss086","DOI":"10.1093\/molbev\/mss086"},{"issue":"4","key":"177_CR19","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gkq","volume":"1","author":"L Falquet","year":"2013","unstructured":"Falquet L, Calderon-Copete SP, Frey J (2013) Draft genome sequence of the virulent Clostridium chauvoei reference strain JF4335. Genome Announc 1(4):1. https:\/\/doi.org\/10.1093\/nar\/gkq","journal-title":"Genome Announc"},{"issue":"12","key":"177_CR20","doi-asserted-by":"publisher","first-page":"R118","DOI":"10.1186\/gb-2012-13-12-r118","volume":"13","author":"X Didelot","year":"2012","unstructured":"Didelot X, Eyre DW, Cule M, Ip CL, Ansari MA, Griffiths D, Vaughan A, O'Connor L, Golubchik T, Batty EM, Piazza P, Wilson DJ, Bowden R, Donnelly PJ, Dingle KE, Wilcox M, Walker AS, Crook DW, Peto TE, Harding RM (2012) Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome Biol 13(12):R118. https:\/\/doi.org\/10.1186\/gb-2012-13-12-r118","journal-title":"Genome Biol"},{"key":"177_CR21","doi-asserted-by":"publisher","unstructured":"Hennig S, Ziebuhr W (2010) Characterization of the transposase encoded by IS256, the prototype of a major family of bacterial insertion sequence elements. 192(16):4153\u20134163. https:\/\/doi.org\/10.1128\/JB.00226-10","DOI":"10.1128\/JB.00226-10"}],"container-title":["Brazilian Journal of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s42770-019-00177-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s42770-019-00177-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s42770-019-00177-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,1,26]],"date-time":"2021-01-26T03:34:22Z","timestamp":1611632062000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s42770-019-00177-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,10,24]]},"references-count":21,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2020,9]]}},"alternative-id":["177"],"URL":"https:\/\/doi.org\/10.1007\/s42770-019-00177-0","relation":{},"ISSN":["1517-8382","1678-4405"],"issn-type":[{"value":"1517-8382","type":"print"},{"value":"1678-4405","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,10,24]]},"assertion":[{"value":"5 October 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 June 2019","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"24 October 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no conflicts of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}