{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T04:06:49Z","timestamp":1790827609053,"version":"4.1.0"},"reference-count":69,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2023,8,18]],"date-time":"2023-08-18T00:00:00Z","timestamp":1692316800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2023,8,18]],"date-time":"2023-08-18T00:00:00Z","timestamp":1692316800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Braz J Microbiol"],"published-print":{"date-parts":[[2023,9]]},"DOI":"10.1007\/s42770-023-01099-8","type":"journal-article","created":{"date-parts":[[2023,8,18]],"date-time":"2023-08-18T05:01:38Z","timestamp":1692334898000},"page":"2103-2116","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Genomic characterization of Staphylococcus aureus from Canastra Minas Artisanal Cheeses"],"prefix":"10.1007","volume":"54","author":[{"given":"Ana P. Arellano","family":"Pineda","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carmen L. Rodr\u00edguez","family":"Cueva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ruy D.","family":"Chac\u00f3n","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manuel","family":"Ram\u00edrez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ot\u00e1vio G. G.","family":"de Almeida","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D\u00e9bora P.","family":"de Oliveira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bernadette D. G. M.","family":"Franco","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gustavo","family":"Lacorte","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mariza","family":"Landgraf","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nathalia Cristina Cirone","family":"Silva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5335-2400","authenticated-orcid":false,"given":"Uelinton Manoel","family":"Pinto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2023,8,18]]},"reference":[{"issue":"6","key":"1099_CR1","doi-asserted-by":"publisher","first-page":"580","DOI":"10.4161\/viru.2.6.18122","volume":"2","author":"J Schelin","year":"2011","unstructured":"Schelin J, Wallin-Carlquist N, Cohn MT, Lindqvist R, Barker GC, R\u00e5dstr\u00f6m P (2011) The formation of Staphylococcus aureus enterotoxin in food environments and advances in risk assessment. Virulence 2(6):580\u2013592. https:\/\/doi.org\/10.4161\/viru.2.6.18122","journal-title":"Virulence"},{"key":"1099_CR2","unstructured":"Le Loir L, Y, Baron F, Gautier M (2003) Staphylococcus aureus and food poisoning. Genet Mol Res 2(1):63\u201376"},{"issue":"2","key":"1099_CR3","first-page":"100","volume":"6","author":"A Baran","year":"2017","unstructured":"Baran A, Erdogan A, Turgut T, Ad\u0131g\u00fczel M (2017) A review on the presence of Staphylococcus aureus in cheese. Turkish Journal of Nature and Science 6(2):100\u2013105","journal-title":"Turkish Journal of Nature and Science"},{"issue":"1","key":"1099_CR4","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1039\/c5ay02550h","volume":"8","author":"L Pritchard","year":"2016","unstructured":"Pritchard L, Glover RH, Humphris S, Elphinstone JG, Toth IK (2016) Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Anal Methods 8(1):12\u201324. https:\/\/doi.org\/10.1039\/c5ay02550h","journal-title":"Anal Methods"},{"key":"1099_CR5","doi-asserted-by":"publisher","unstructured":"Campos GZ, Lacorte GA, Jurkiewicz C, et al. (2021) Microbiological characteristics of Canastra cheese during manufacturing and ripening. Food Control 121. https:\/\/doi.org\/10.1016\/j.foodcont.2020.107598","DOI":"10.1016\/j.foodcont.2020.107598"},{"key":"1099_CR6","doi-asserted-by":"publisher","unstructured":"Pineda APA, Campos GZ, Pimentel-Filho NJ, Franco BDG de M, Pinto UM (2021) Brazilian artisanal cheeses: diversity, microbiological safety, and challenges for the sector. Front Microbiol 12. https:\/\/doi.org\/10.3389\/fmicb.2021.666922","DOI":"10.3389\/fmicb.2021.666922"},{"key":"1099_CR7","unstructured":"Brasil. Minist\u00e9rio da Sa\u00fade. Surtos de Doen\u00e7as de Transmiss\u00e3o H\u00eddrica e Alimentar no Brasil Informe 2022. [WWW Document], n.d.\u00a0\u00a0https:\/\/www.gov.br\/saude\/pt-br\/assuntos\/saude-de-a-a-z\/d\/dtha\/publicacoes\/surtos-de-doencas-de-transmissao-hidrica-e-alimentar-no-brasil-informe-2022\/view (accessed 22.2.23)."},{"issue":"2","key":"1099_CR8","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1590\/S0101-20612013005000033","volume":"33","author":"MT das Dores","year":"2013","unstructured":"das Dores MT, Dias RS, Arcuri EF, da Nobrega JE, de Ferreira CLLF (2013) Enterotoxigenic potential of Staphylococcus aureus isolated from Artisan Minas cheese from the Serra da Canastra \u2013 MG, Brazil. Food Sci Technol 33(2):271\u2013275. https:\/\/doi.org\/10.1590\/S0101-20612013005000033","journal-title":"Food Sci Technol"},{"issue":"3","key":"1099_CR9","doi-asserted-by":"publisher","first-page":"997","DOI":"10.3390\/toxins7030997","volume":"7","author":"S Johler","year":"2015","unstructured":"Johler S, Giannini P, Jermini M, Hummerjohann J, Baumgartner A, Stephan R (2015) Further evidence for staphylococcal food poisoning outbreaks caused by egc-encoded enterotoxins. Toxins (Basel) 7(3):997\u20131004. https:\/\/doi.org\/10.3390\/toxins7030997","journal-title":"Toxins (Basel)"},{"key":"1099_CR10","doi-asserted-by":"publisher","unstructured":"da Silva C\u00e2ndido TJ, da Silva AC, de Matos LG, et al. (2020) Enterotoxigenic potential and molecular typing of Staphylococcus sp. isolated from organic and conventional fresh minas cheese in the state of S\u00e3o Paulo, Brazil. Int Dairy J 102. https:\/\/doi.org\/10.1016\/j.idairyj.2019.104605","DOI":"10.1016\/j.idairyj.2019.104605"},{"key":"1099_CR11","doi-asserted-by":"publisher","unstructured":"Macori G, Bellio A, Bianchi DM, et al. (2020) Genome-wide profiling of enterotoxigenic Staphylococcus aureus strains used for the production of naturally contaminated cheeses. Genes (Basel) 11(1). https:\/\/doi.org\/10.3390\/genes11010033","DOI":"10.3390\/genes11010033"},{"key":"1099_CR12","doi-asserted-by":"publisher","unstructured":"Chac\u00f3n RD, Ram\u00edrez M, Rodr\u00edguez-Cueva CL, et al. (2023) Genomic characterization and genetic profiles of Salmonella gallinarum strains isolated from layers with fowl typhoid in Colombia. Genes (Basel) 14(4). https:\/\/doi.org\/10.3390\/genes14040823","DOI":"10.3390\/genes14040823"},{"key":"1099_CR13","doi-asserted-by":"publisher","unstructured":"Igbinosa EO, Beshiru A, Akporehe LU, Oviasogie FE, Igbinosa OO (2023) Prevalence of methicillin-resistant Staphylococcus aureus and other Staphylococcus species in raw meat samples intended for human consumption in Benin City, Nigeria: implications for public health. Int J Environ Res Public Health 13(10). https:\/\/doi.org\/10.3390\/ijerph13100949","DOI":"10.3390\/ijerph13100949"},{"key":"1099_CR14","volume-title":"M100\u2014performance standards for antimicrobial susceptibility testing","author":"Clinical and Laboratory Standards Institute (CLSI)","year":"2022","unstructured":"Clinical and Laboratory Standards Institute (CLSI) (2022) M100\u2014performance standards for antimicrobial susceptibility testing, 32nd edn. Clinical and Laboratory Standards Institute, Wayne, PA","edition":"32"},{"issue":"15","key":"1099_CR15","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15):2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"issue":"8","key":"1099_CR16","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","volume":"29","author":"A Gurevich","year":"2013","unstructured":"Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29(8):1072\u20131075. https:\/\/doi.org\/10.1093\/bioinformatics\/btt086","journal-title":"Bioinformatics"},{"issue":"19","key":"1099_CR17","doi-asserted-by":"publisher","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","volume":"31","author":"FA Sim\u00e3o","year":"2015","unstructured":"Sim\u00e3o FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31(19):3210\u20133212. https:\/\/doi.org\/10.1093\/bioinformatics\/btv351","journal-title":"Bioinformatics"},{"key":"1099_CR18","doi-asserted-by":"publisher","unstructured":"Jolley KA, Bray JE, Maiden MCJ (2018) Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications [version 1; referees: 2 approved]. Wellcome Open Res 3. https:\/\/doi.org\/10.12688\/wellcomeopenres.14826.1","DOI":"10.12688\/wellcomeopenres.14826.1"},{"issue":"D1","key":"1099_CR19","doi-asserted-by":"publisher","first-page":"D566","DOI":"10.1093\/nar\/gkw1004","volume":"45","author":"B Jia","year":"2017","unstructured":"Jia B, Raphenya AR, Alcock B et al (2017) CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Res 45(D1):D566\u2013D573. https:\/\/doi.org\/10.1093\/nar\/gkw1004","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"1099_CR20","doi-asserted-by":"publisher","first-page":"D687","DOI":"10.1093\/nar\/gky1080","volume":"47","author":"B Liu","year":"2019","unstructured":"Liu B, Zheng D, Jin Q, Chen L, Yang J (2019) VFDB 2019: a comparative pathogenomic platform with an interactive web interface. Nucleic Acids Res 47(D1):D687\u2013D692. https:\/\/doi.org\/10.1093\/nar\/gky1080","journal-title":"Nucleic Acids Res"},{"issue":"21","key":"1099_CR21","doi-asserted-by":"publisher","first-page":"3340","DOI":"10.1093\/bioinformatics\/btx433","volume":"33","author":"Z Xie","year":"2017","unstructured":"Xie Z, Tang H (2017) ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. Bioinformatics 33(21):3340\u20133347. https:\/\/doi.org\/10.1093\/bioinformatics\/btx433","journal-title":"Bioinformatics"},{"key":"1099_CR22","doi-asserted-by":"publisher","unstructured":"Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12. https:\/\/doi.org\/10.1186\/1471-2164-12-402","DOI":"10.1186\/1471-2164-12-402"},{"issue":"11","key":"1099_CR23","doi-asserted-by":"publisher","first-page":"6856","DOI":"10.3168\/jds.2013-6719","volume":"96","author":"NCC Silva","year":"2013","unstructured":"Silva NCC, Guimar\u00e3es FF, Manzi MP et al (2013) Molecular characterization and clonal diversity of methicillin-susceptible Staphylococcus aureus in milk of cows with mastitis in Brazil. J Dairy Sci 96(11):6856\u20136862. https:\/\/doi.org\/10.3168\/jds.2013-6719","journal-title":"J Dairy Sci"},{"key":"1099_CR24","doi-asserted-by":"publisher","first-page":"130","DOI":"10.1016\/j.micpath.2018.08.031","volume":"124","author":"ECR Bonsaglia","year":"2018","unstructured":"Bonsaglia ECR, Silva NCC, Rossi BF et al (2018) Molecular epidemiology of methicillin-susceptible Staphylococcus aureus (MSSA) isolated from milk of cows with subclinical mastitis. Microb Pathog 124:130\u2013135. https:\/\/doi.org\/10.1016\/j.micpath.2018.08.031","journal-title":"Microb Pathog"},{"issue":"10","key":"1099_CR25","doi-asserted-by":"publisher","first-page":"2519","DOI":"10.1093\/jac\/dkab208","volume":"76","author":"OM Mama","year":"2021","unstructured":"Mama OM, Aspiroz C, Lozano C et al (2021) Penicillin susceptibility among invasive MSSA infections: a multicentre study in 16 Spanish hospitals. J Antimicrob Chemother 76(10):2519\u20132527. https:\/\/doi.org\/10.1093\/jac\/dkab208","journal-title":"J Antimicrob Chemother"},{"issue":"12","key":"1099_CR26","doi-asserted-by":"publisher","first-page":"3845","DOI":"10.1128\/AEM.00019-07","volume":"73","author":"M Aires-de-Sousa","year":"2007","unstructured":"Aires-de-Sousa M, Parente CESR, Vieira-da-Motta O, Bonna ICF, Silva DA, De Lencastre H (2007) Characterization of Staphylococcus aureus isolates from buffalo, bovine, ovine, and caprine milk samples collected in Rio de Janeiro State, Brazil. Appl Environ Microbiol 73(12):3845\u20133849. https:\/\/doi.org\/10.1128\/AEM.00019-07","journal-title":"Brazil Appl Environ Microbiol"},{"issue":"3","key":"1099_CR27","doi-asserted-by":"publisher","first-page":"339","DOI":"10.1111\/tmi.13192","volume":"24","author":"EPL Pereira-Franchi","year":"2019","unstructured":"Pereira-Franchi EPL, Barreira MRN, de Costa NSLM et al (2019) Molecular epidemiology of methicillin-resistant Staphylococcus aureus in the Brazilian primary health care system. Trop Med Int Health 24(3):339\u2013347. https:\/\/doi.org\/10.1111\/tmi.13192","journal-title":"Trop Med Int Health"},{"issue":"1","key":"1099_CR28","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1111\/1574-6968.12358","volume":"351","author":"ANG Dabul","year":"2014","unstructured":"Dabul ANG, Camargo ILBC (2014) Clonal complexes of Staphylococcus aureus: all mixed and together. FEMS Microbiol Lett 351(1):7\u20138. https:\/\/doi.org\/10.1111\/1574-6968.12358","journal-title":"FEMS Microbiol Lett"},{"issue":"5","key":"1099_CR29","doi-asserted-by":"publisher","first-page":"1857","DOI":"10.1128\/AAC.49.5.1857-1864.2005","volume":"49","author":"GW Kaatz","year":"2005","unstructured":"Kaatz GW, McAleese F, Seo SM (2005) Multidrug resistance in Staphylococcus aureus due to overexpression of a novel multidrug and toxin extrusion (MATE) transport protein. Antimicrob Agents Chemother 49(5):1857\u20131864. https:\/\/doi.org\/10.1128\/AAC.49.5.1857-1864.2005","journal-title":"Antimicrob Agents Chemother"},{"key":"1099_CR30","doi-asserted-by":"publisher","unstructured":"Mores CR, Montelongo C, Putonti C, Wolfe AJ, Abouelfetouh A (2021) Investigation of plasmids among clinical Staphylococcus aureus and Staphylococcus haemolyticus isolates from Egypt. Front Microbiol 12. https:\/\/doi.org\/10.3389\/fmicb.2021.659116","DOI":"10.3389\/fmicb.2021.659116"},{"key":"1099_CR31","doi-asserted-by":"publisher","unstructured":"Asante J, Hetsa BA, Amoako DG, Abia ALK, Bester LA, Essack SY (2021) Genomic analysis of antibiotic-resistant Staphylococcus epidermidis isolates from clinical sources in the Kwazulu-Natal Province, South Africa. Front Microbiol 12. https:\/\/doi.org\/10.3389\/fmicb.2021.656306","DOI":"10.3389\/fmicb.2021.656306"},{"issue":"2","key":"1099_CR32","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1007\/s12551-018-0404-9","volume":"10","author":"MK Phillips-Jones","year":"2018","unstructured":"Phillips-Jones MK, Harding SE (2018) Antimicrobial resistance (AMR) nanomachines\u2014mechanisms for fluoroquinolone and glycopeptide recognition, efflux and\/or deactivation. Biophys Rev 10(2):347\u2013362. https:\/\/doi.org\/10.1007\/s12551-018-0404-9","journal-title":"Biophys Rev"},{"issue":"1","key":"1099_CR33","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1046\/j.1365-2958.2001.02515.x","volume":"41","author":"B Fournier","year":"2001","unstructured":"Fournier B, Klier A, Rapoport G (2001) The two-component system ArlS-ArlR is a regulator of virulence gene expression in Staphylococcus aureus. Mol Microbiol 41(1):247\u2013261. https:\/\/doi.org\/10.1046\/j.1365-2958.2001.02515.x","journal-title":"Mol Microbiol"},{"issue":"1","key":"1099_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3934\/microbiol.2018.1.1","volume":"4","author":"M Lekshmi","year":"2018","unstructured":"Lekshmi M, Ammini P, Adjei J et al (2018) Modulation of antimicrobial efflux pumps of the major facilitator superfamily in <em>Staphylococcus aureus<\/em>. AIMS Microbiol 4(1):1\u201318. https:\/\/doi.org\/10.3934\/microbiol.2018.1.1","journal-title":"AIMS Microbiol"},{"key":"1099_CR35","doi-asserted-by":"publisher","unstructured":"Fu Z, Liu Y, Chen C, et al. (2016) Characterization of fosfomycin resistance gene, fosB, in methicillin-resistant Staphylococcus aureus isolates. PLoS One 11(5). https:\/\/doi.org\/10.1371\/journal.pone.0154829","DOI":"10.1371\/journal.pone.0154829"},{"issue":"3","key":"1099_CR36","doi-asserted-by":"publisher","first-page":"339","DOI":"10.1016\/j.chembiol.2017.12.009","volume":"25","author":"PW Fowler","year":"2018","unstructured":"Fowler PW, Cole K, Gordon NC et al (2018) Robust prediction of resistance to trimethoprim in Staphylococcus aureus. Cell Chem Biol 25(3):339-349.e4. https:\/\/doi.org\/10.1016\/j.chembiol.2017.12.009","journal-title":"Cell Chem Biol"},{"key":"1099_CR37","doi-asserted-by":"publisher","first-page":"526","DOI":"10.3349\/ymj.1998.39.6.526","volume":"39","author":"T Ito","year":"1998","unstructured":"Ito T, Hiramatsu K (1998) Acquisition of methicillin resistance and progression of multiantibiotic resistance in methicillin-resistant Staphylococcus aureus. Yonsei Med J 39:526\u2013533. https:\/\/doi.org\/10.3349\/ymj.1998.39.6.526","journal-title":"Yonsei Med J"},{"key":"1099_CR38","doi-asserted-by":"publisher","unstructured":"da Silva Abreu AC, Matos LG, da Silva C\u00e2ndido TJ, et al. (2021) Antimicrobial resistance of Staphylococcus spp. isolated from organic and conventional Minas Frescal cheese producers in S\u00e3o Paulo, Brazil. J Dairy Sci 104(4). https:\/\/doi.org\/10.3168\/jds.2020-19338","DOI":"10.3168\/jds.2020-19338"},{"key":"1099_CR39","doi-asserted-by":"publisher","unstructured":"Kateete DP, Bwanga F, Seni J, et al. (2019) CA-MRSA and HA-MRSA coexist in community and hospital settings in Uganda. Antimicrob Resist Infect Control 8(1). https:\/\/doi.org\/10.1186\/s13756-019-0551-1","DOI":"10.1186\/s13756-019-0551-1"},{"issue":"12","key":"1099_CR40","doi-asserted-by":"publisher","first-page":"484","DOI":"10.1016\/s0966-842x(98)01400-0","volume":"6","author":"TJ Foster","year":"1998","unstructured":"Foster TJ, H\u00f6\u00f6k M (1998) Surface protein adhesins of Staphylococcus aureus. Trends Microbiol 6(12):484\u2013488. https:\/\/doi.org\/10.1016\/s0966-842x(98)01400-0","journal-title":"Trends Microbiol"},{"issue":"10","key":"1099_CR41","doi-asserted-by":"publisher","first-page":"2701","DOI":"10.1099\/mic.0.26465-0","volume":"149","author":"N Harraghy","year":"2003","unstructured":"Harraghy N, Hussain M, Haggar A et al (2003) The adhesive and immunomodulating properties of the multifunctional Staphylococcus aureus protein Eap. Microbiology (N Y) 149(10):2701\u20132707. https:\/\/doi.org\/10.1099\/mic.0.26465-0","journal-title":"Microbiology (N Y)"},{"key":"1099_CR42","doi-asserted-by":"publisher","unstructured":"Soltani E, Farrokhi E, Zamanzad B, et al. (2019) Prevalence and distribution of adhesins and the expression of fibronectin-binding protein (FnbA and FnbB) among Staphylococcus aureus isolates from Shahrekord Hospitals 06 Biological Sciences 0604 Genetics. BMC Res Notes 12(1). https:\/\/doi.org\/10.1186\/s13104-019-4055-0","DOI":"10.1186\/s13104-019-4055-0"},{"issue":"2","key":"1099_CR43","doi-asserted-by":"publisher","first-page":"576","DOI":"10.1128\/JB.187.2.576-592.2005","volume":"187","author":"JE Cassat","year":"2005","unstructured":"Cassat JE, Dunman PM, McAleese F, Murphy E, Projan SJ, Smeltzer MS (2005) Comparative genomics of Staphylococcus aureus musculoskeletal isolates. J Bacteriol 187(2):576\u2013592. https:\/\/doi.org\/10.1128\/JB.187.2.576-592.2005","journal-title":"J Bacteriol"},{"key":"1099_CR44","doi-asserted-by":"publisher","unstructured":"Ajayi C, \u00c5berg E, Askarian F, Sollid JUE, Johannessen M, Hanssen AM (2018) Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers. BMC Microbiol 18(1). https:\/\/doi.org\/10.1186\/s12866-018-1179-7","DOI":"10.1186\/s12866-018-1179-7"},{"issue":"6","key":"1099_CR45","doi-asserted-by":"publisher","first-page":"1367","DOI":"10.1046\/j.1365-2958.2002.02827.x","volume":"43","author":"F G\u00f6tz","year":"2002","unstructured":"G\u00f6tz F (2002) Staphylococcus and biofilms. Mol Microbiol 43(6):1367\u20131378. https:\/\/doi.org\/10.1046\/j.1365-2958.2002.02827.x","journal-title":"Mol Microbiol"},{"key":"1099_CR46","doi-asserted-by":"publisher","unstructured":"Cao Z, Casabona MG, Kneuper H, Chalmers JD, Palmer T (2016) The type VII secretion system of Staphylococcus aureus secretes a nuclease toxin that targets competitor bacteria. Nat Microbiol 2(1). https:\/\/doi.org\/10.1038\/nmicrobiol.2016.183","DOI":"10.1038\/nmicrobiol.2016.183"},{"key":"1099_CR47","doi-asserted-by":"publisher","unstructured":"Batool N, Shamim A, Chaurasia AK, Kim KK (2021) Genome-wide analysis of Staphylococcus aureus sequence type 72 isolates provides insights into resistance against antimicrobial agents and virulence potential. Front Microbiol 11:613800. https:\/\/doi.org\/10.3389\/fmicb.2020.613800","DOI":"10.3389\/fmicb.2020.613800"},{"key":"1099_CR48","doi-asserted-by":"publisher","unstructured":"Haupt K, Reuter M, Van Den Elsen J, et al. (2008) The Staphylococcus aureus protein Sbi acts as a complement inhibitor and forms a tripartite complex with host complement factor H and C3b. PLoS Pathog 4(12). https:\/\/doi.org\/10.1371\/journal.ppat.1000250","DOI":"10.1371\/journal.ppat.1000250"},{"issue":"22","key":"1099_CR49","doi-asserted-by":"publisher","first-page":"15680","DOI":"10.1074\/jbc.M114.567669","volume":"289","author":"YGY Chan","year":"2014","unstructured":"Chan YGY, Kim HK, Schneewind O, Missiakas D (2014) The capsular polysaccharide of Staphylococcus aureus is attached to peptidoglycan by the LytR-CpsA-Psr (LCP) family of enzymes. J Biol Chem 289(22):15680\u201315690. https:\/\/doi.org\/10.1074\/jbc.M114.567669","journal-title":"J Biol Chem"},{"issue":"9","key":"1099_CR50","doi-asserted-by":"publisher","first-page":"920","DOI":"10.1038\/ni1235","volume":"6","author":"SHM Rooijakkers","year":"2005","unstructured":"Rooijakkers SHM, Ruyken M, Roos A et al (2005) Immune evasion by a staphylococcal complement inhibitor that acts on C3 convertases. Nat Immunol 6(9):920\u2013927. https:\/\/doi.org\/10.1038\/ni1235","journal-title":"Nat Immunol"},{"issue":"5","key":"1099_CR51","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1084\/jem.20031636","volume":"199","author":"CJC De Haas","year":"2004","unstructured":"De Haas CJC, Veldkamp KE, Peschel A et al (2004) Chemotaxis inhibitory protein of Staphylococcus aureus, a bacterial antiinflammatory agent. J Exp Med 199(5):687\u2013695. https:\/\/doi.org\/10.1084\/jem.20031636","journal-title":"J Exp Med"},{"issue":"9","key":"1099_CR52","doi-asserted-by":"publisher","first-page":"775","DOI":"10.1016\/S1286-4579(03)00143-6","volume":"5","author":"IM Jonsson","year":"2003","unstructured":"Jonsson IM, Mazmanian SK, Schneewind O, Bremell T, Tarkowski A (2003) The role of Staphylococcus aureus sortase A and sortase B in murine arthritis. Microbes Infect 5(9):775\u2013780. https:\/\/doi.org\/10.1016\/S1286-4579(03)00143-6","journal-title":"Microbes Infect"},{"issue":"3","key":"1099_CR53","doi-asserted-by":"publisher","first-page":"997","DOI":"10.3390\/toxins7030997","volume":"7","author":"S Johler","year":"2015","unstructured":"Johler S, Giannini P, Jermini M, Hummerjohann J, Baumgartner A, Stephan R (2015) Further evidence for staphylococcal food poisoning outbreaks caused by egc-encoded enterotoxins. Toxins (Basel) 7(3):997\u20131004. https:\/\/doi.org\/10.3390\/toxins7030997","journal-title":"Toxins (Basel)"},{"issue":"3","key":"1099_CR54","doi-asserted-by":"publisher","first-page":"603","DOI":"10.1128\/CMR.00134-14","volume":"28","author":"SYC Tong","year":"2015","unstructured":"Tong SYC, Davis JS, Eichenberger E, Holland TL, Fowler VG (2015) Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management. Clin Microbiol Rev 28(3):603\u2013661. https:\/\/doi.org\/10.1128\/CMR.00134-14","journal-title":"Clin Microbiol Rev"},{"issue":"1","key":"1099_CR55","doi-asserted-by":"publisher","first-page":"226","DOI":"10.1111\/j.1600-065X.2008.00681.x","volume":"225","author":"JD Fraser","year":"2008","unstructured":"Fraser JD, Proft T (2008) The bacterial superantigen and superantigen-like proteins. Immunol Rev 225(1):226\u2013243. https:\/\/doi.org\/10.1111\/j.1600-065X.2008.00681.x","journal-title":"Immunol Rev"},{"key":"1099_CR56","doi-asserted-by":"publisher","unstructured":"Hall JW, Yang J, Guo H, Ji Y (2015) The AirSR two-component system contributes to Staphylococcus aureus survival in human blood and transcriptionally regulates sspABC operon. Front Microbiol 6:682. https:\/\/doi.org\/10.3389\/fmicb.2015.00682","DOI":"10.3389\/fmicb.2015.00682"},{"key":"1099_CR57","doi-asserted-by":"publisher","unstructured":"Nguyen LT, Vogel HJ. (2016) Staphylokinase has distinct modes of interaction with antimicrobial peptides, modulating its plasminogen-activation properties. Sci Rep 6. https:\/\/doi.org\/10.1038\/srep31817","DOI":"10.1038\/srep31817"},{"key":"1099_CR58","doi-asserted-by":"publisher","unstructured":"Paharik AE, Salgado-Pabon W, Meyerholz DK, White MJ, Schlievert PM, Horswill AR (2016) The Spl serine proteases modulate Staphylococcus aureus protein production and virulence in a rabbit model of pneumonia. mSphere 1(5). https:\/\/doi.org\/10.1128\/msphere.00208-16","DOI":"10.1128\/msphere.00208-16"},{"issue":"4","key":"1099_CR59","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1111\/j.1574-6976.2011.00311.x","volume":"36","author":"JA Hennekinne","year":"2012","unstructured":"Hennekinne JA, De Buyser ML, Dragacci S (2012) Staphylococcus aureus and its food poisoning toxins: characterization and outbreak investigation. FEMS Microbiol Rev 36(4):815\u2013836. https:\/\/doi.org\/10.1111\/j.1574-6976.2011.00311.x","journal-title":"FEMS Microbiol Rev"},{"issue":"12","key":"1099_CR60","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/pathogens9121064","volume":"9","author":"V Filipello","year":"2020","unstructured":"Filipello V, Bonometti E, Campagnani M et al (2020) Investigation and follow-up of a staphylococcal food poisoning outbreak linked to the consumption of traditional hand-crafted alm cheese. Pathogens 9(12):1\u20136. https:\/\/doi.org\/10.3390\/pathogens9121064","journal-title":"Pathogens"},{"key":"1099_CR61","doi-asserted-by":"publisher","unstructured":"Gonzalez AGM, Marques LMP, Da Silva Amorim Gomes M, et al. (2020) Methicillin-resistant Staphylococcus aureus in Minas Frescal cheese: evaluation of classic enterotoxin genes, antimicrobial resistance and clonal diversity. FEMS Microbiol Lett 364(23). https:\/\/doi.org\/10.1093\/femsle\/fnx232","DOI":"10.1093\/femsle\/fnx232"},{"key":"1099_CR62","doi-asserted-by":"publisher","unstructured":"Stephens C, Cho PJY, de Araujo VA, et al. (2015) Draft genome sequence of a community-associated methicillin-resistant Panton-Valentine leukocidin-positive Staphylococcus aureus sequence type 30 isolate from a pediatric patient with a lung infection in Brazil. Genome Announc 3(4). https:\/\/doi.org\/10.1128\/genomeA.00907-15","DOI":"10.1128\/genomeA.00907-15"},{"key":"1099_CR63","doi-asserted-by":"publisher","unstructured":"Wang L, Si W, Xue H, Zhao X (2018) Characterization of a functional insertion sequence ISSau2 from Staphylococcus aureus. Mob DNA 9(1).https:\/\/doi.org\/10.1186\/s13100-018-0108-5","DOI":"10.1186\/s13100-018-0108-5"},{"key":"1099_CR64","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1016\/j.meegid.2013.06.012","volume":"19","author":"AJ McCarthy","year":"2013","unstructured":"McCarthy AJ, Lindsay JA (2013) Staphylococcus aureus innate immune evasion is lineage-specific: a bioinfomatics study. Infect Genet Evol 19:7\u201314. https:\/\/doi.org\/10.1016\/j.meegid.2013.06.012","journal-title":"Infect Genet Evol"},{"key":"1099_CR65","doi-asserted-by":"publisher","unstructured":"Pietrocola G, Nobile G, Rindi S, Speziale P (2017) Staphylococcus aureus manipulates innate immunity through own and host-expressed proteases. Front Cell Infect Microbiol 7:166. https:\/\/doi.org\/10.3389\/fcimb.2017.00166","DOI":"10.3389\/fcimb.2017.00166"},{"issue":"9","key":"1099_CR66","doi-asserted-by":"publisher","first-page":"4987","DOI":"10.1128\/IAI.70.9.4987-4996.2002","volume":"70","author":"SJ Peacock","year":"2002","unstructured":"Peacock SJ, Moore CE, Justice A et al (2002) Virulent combinations of adhesin and toxin genes in natural populations of Staphylococcus aureus. Infect Immun 70(9):4987\u20134996. https:\/\/doi.org\/10.1128\/IAI.70.9.4987-4996.2002","journal-title":"Infect Immun"},{"key":"1099_CR67","doi-asserted-by":"publisher","unstructured":"Davis RW, Brannen AD, Hossain MJ, et al. (2016) Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains. BMC Genomics 17(1). https:\/\/doi.org\/10.1186\/s12864-016-2433-8","DOI":"10.1186\/s12864-016-2433-8"},{"issue":"8","key":"1099_CR68","doi-asserted-by":"publisher","first-page":"2177","DOI":"10.3390\/toxins2082177","volume":"2","author":"IV Pinchuk","year":"2010","unstructured":"Pinchuk IV, Beswick EJ, Reyes VE (2010) Staphylococcal enterotoxins. Toxins (Basel) 2(8):2177\u20132197. https:\/\/doi.org\/10.3390\/toxins2082177","journal-title":"Toxins (Basel)"},{"issue":"9","key":"1099_CR69","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1038\/nrmicro2200","volume":"7","author":"HF Chambers","year":"2009","unstructured":"Chambers HF, DeLeo FR (2009) Waves of resistance: Staphylococcus aureus in the antibiotic era. Nat Rev Microbiol 7(9):629\u2013641. https:\/\/doi.org\/10.1038\/nrmicro2200","journal-title":"Nat Rev Microbiol"}],"container-title":["Brazilian Journal of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s42770-023-01099-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s42770-023-01099-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s42770-023-01099-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,8]],"date-time":"2023-09-08T02:23:05Z","timestamp":1694139785000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s42770-023-01099-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,8,18]]},"references-count":69,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2023,9]]}},"alternative-id":["1099"],"URL":"https:\/\/doi.org\/10.1007\/s42770-023-01099-8","relation":{},"ISSN":["1517-8382","1678-4405"],"issn-type":[{"value":"1517-8382","type":"print"},{"value":"1678-4405","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,8,18]]},"assertion":[{"value":"20 June 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 August 2023","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 August 2023","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}]}}