{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T21:26:52Z","timestamp":1742938012063,"version":"3.40.3"},"publisher-location":"New York, NY","reference-count":40,"publisher":"Springer US","isbn-type":[{"type":"print","value":"9781071622964"},{"type":"electronic","value":"9781071622971"}],"license":[{"start":{"date-parts":[[2022,1,1]],"date-time":"2022-01-01T00:00:00Z","timestamp":1640995200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2022,1,1]],"date-time":"2022-01-01T00:00:00Z","timestamp":1640995200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022]]},"DOI":"10.1007\/978-1-0716-2297-1_5","type":"book-chapter","created":{"date-parts":[[2022,4,25]],"date-time":"2022-04-25T15:06:38Z","timestamp":1650899198000},"page":"47-59","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Shoot Branching Phenotyping in Arabidopsis and Tomato"],"prefix":"10.1007","author":[{"given":"Ana","family":"Confraria","sequence":"first","affiliation":[]},{"given":"Aitor","family":"Mu\u00f1oz-Gasca","sequence":"additional","affiliation":[]},{"given":"Liliana","family":"Ferreira","sequence":"additional","affiliation":[]},{"given":"Elena","family":"Baena-Gonz\u00e1lez","sequence":"additional","affiliation":[]},{"given":"Pilar","family":"Cubas","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2022,4,26]]},"reference":[{"issue":"3","key":"5_CR1","doi-asserted-by":"publisher","first-page":"220","DOI":"10.1016\/j.tplants.2018.12.001","volume":"24","author":"FF Barbier","year":"2019","unstructured":"Barbier FF, Dun EA, Kerr SC, Chabikwa TG, Beveridge CA (2019) An update on the signals controlling shoot branching. Trends Plant Sci 24(3):220\u2013236. https:\/\/doi.org\/10.1016\/j.tplants.2018.12.001","journal-title":"Trends Plant Sci"},{"key":"5_CR2","doi-asserted-by":"publisher","first-page":"741","DOI":"10.3389\/fpls.2014.00741","volume":"5","author":"C Rameau","year":"2014","unstructured":"Rameau C, Bertheloot J, Leduc N, Andrieu B, Foucher F, Sakr S (2014) Multiple pathways regulate shoot branching. Front Plant Sci 5:741. https:\/\/doi.org\/10.3389\/fpls.2014.00741","journal-title":"Front Plant Sci"},{"key":"5_CR3","doi-asserted-by":"publisher","first-page":"35955","DOI":"10.1038\/srep35955","volume":"6","author":"J Balla","year":"2016","unstructured":"Balla J, Medvedova Z, Kalousek P, Matijescukova N, Friml J, Reinohl V, Prochazka S (2016) Auxin flow-mediated competition between axillary buds to restore apical dominance. Sci Rep 6:35955. https:\/\/doi.org\/10.1038\/srep35955","journal-title":"Sci Rep"},{"issue":"2","key":"5_CR4","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1105\/tpc.007542","volume":"15","author":"J Booker","year":"2003","unstructured":"Booker J, Chatfield S, Leyser O (2003) Auxin acts in xylem-associated or medullary cells to mediate apical dominance. Plant Cell 15(2):495\u2013507","journal-title":"Plant Cell"},{"issue":"41","key":"5_CR5","doi-asserted-by":"publisher","first-page":"17431","DOI":"10.1073\/pnas.0906696106","volume":"106","author":"P Prusinkiewicz","year":"2009","unstructured":"Prusinkiewicz P, Crawford S, Smith RS, Ljung K, Bennett T, Ongaro V, Leyser O (2009) Control of bud activation by an auxin transport switch. Proc Natl Acad Sci U S A 106(41):17431\u201317436. https:\/\/doi.org\/10.1073\/pnas.0906696106","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"7","key":"5_CR6","doi-asserted-by":"publisher","first-page":"714","DOI":"10.1073\/pnas.19.7.714","volume":"19","author":"KV Thimann","year":"1933","unstructured":"Thimann KV, Skoog F (1933) Studies on the growth hormone of plants: III. The inhibiting action of the growth substance on bud development. Proc Natl Acad Sci U S A 19(7):714\u2013716","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"5_CR7","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1038\/nrm3088","volume":"12","author":"MA Domagalska","year":"2011","unstructured":"Domagalska MA, Leyser O (2011) Signal integration in the control of shoot branching. Nat Rev Mol Cell Biol 12(4):211\u2013221. https:\/\/doi.org\/10.1038\/nrm3088","journal-title":"Nat Rev Mol Cell Biol"},{"issue":"2","key":"5_CR8","doi-asserted-by":"publisher","first-page":"803","DOI":"10.1104\/pp.17.01691","volume":"177","author":"T Waldie","year":"2018","unstructured":"Waldie T, Leyser O (2018) Cytokinin targets auxin transport to promote shoot branching. Plant Physiol 177(2):803\u2013818. https:\/\/doi.org\/10.1104\/pp.17.01691","journal-title":"Plant Physiol"},{"issue":"5","key":"5_CR9","doi-asserted-by":"publisher","first-page":"874","DOI":"10.1111\/tpj.12862","volume":"82","author":"D Muller","year":"2015","unstructured":"Muller D, Waldie T, Miyawaki K, To JP, Melnyk CW, Kieber JJ, Kakimoto T, Leyser O (2015) Cytokinin is required for escape but not release from auxin mediated apical dominance. Plant J 82(5):874\u2013886. https:\/\/doi.org\/10.1111\/tpj.12862","journal-title":"Plant J"},{"issue":"2","key":"5_CR10","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1046\/j.1365-313x.2000.00862.x","volume":"24","author":"SP Chatfield","year":"2000","unstructured":"Chatfield SP, Stirnberg P, Forde BG, Leyser O (2000) The hormonal regulation of axillary bud growth in Arabidopsis. Plant J 24(2):159\u2013169. https:\/\/doi.org\/10.1046\/j.1365-313x.2000.00862.x","journal-title":"Plant J"},{"issue":"1","key":"5_CR11","doi-asserted-by":"publisher","first-page":"136","DOI":"10.2307\/2440896","volume":"54","author":"T Sachs","year":"1967","unstructured":"Sachs T, Thimann KV (1967) The role of auxins and cytokinins in the release of buds from dominance. Am J Bot 54(1):136\u2013144. https:\/\/doi.org\/10.2307\/2440896","journal-title":"Am J Bot"},{"issue":"17","key":"5_CR12","doi-asserted-by":"publisher","first-page":"2905","DOI":"10.1242\/dev.051987","volume":"137","author":"S Crawford","year":"2010","unstructured":"Crawford S, Shinohara N, Sieberer T, Williamson L, George G, Hepworth J, Muller D, Domagalska MA, Leyser O (2010) Strigolactones enhance competition between shoot branches by dampening auxin transport. Development 137(17):2905\u20132913. https:\/\/doi.org\/10.1242\/dev.051987","journal-title":"Development"},{"issue":"7210","key":"5_CR13","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1038\/nature07271","volume":"455","author":"V Gomez-Roldan","year":"2008","unstructured":"Gomez-Roldan V, Fermas S, Brewer PB, Puech-Pages V, Dun EA, Pillot JP, Letisse F, Matusova R, Danoun S, Portais JC, Bouwmeester H, Becard G, Beveridge CA, Rameau C, Rochange SF (2008) Strigolactone inhibition of shoot branching. Nature 455(7210):189\u2013194. https:\/\/doi.org\/10.1038\/nature07271","journal-title":"Nature"},{"issue":"2","key":"5_CR14","doi-asserted-by":"publisher","first-page":"388","DOI":"10.1093\/mp\/ssn007","volume":"1","author":"V Ongaro","year":"2008","unstructured":"Ongaro V, Bainbridge K, Williamson L, Leyser O (2008) Interactions between axillary branches of Arabidopsis. Mol Plant 1(2):388\u2013400. https:\/\/doi.org\/10.1093\/mp\/ssn007","journal-title":"Mol Plant"},{"issue":"5","key":"5_CR15","doi-asserted-by":"publisher","first-page":"1131","DOI":"10.1242\/dev.129.5.1131","volume":"129","author":"P Stirnberg","year":"2002","unstructured":"Stirnberg P, van De Sande K, Leyser HM (2002) MAX1 and MAX2 control shoot lateral branching in Arabidopsis. Development 129(5):1131\u20131141","journal-title":"Development"},{"issue":"1","key":"5_CR16","doi-asserted-by":"publisher","first-page":"482","DOI":"10.1104\/pp.108.134783","volume":"150","author":"PB Brewer","year":"2009","unstructured":"Brewer PB, Dun EA, Ferguson BJ, Rameau C, Beveridge CA (2009) Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis. Plant Physiol 150(1):482\u2013493. https:\/\/doi.org\/10.1104\/pp.108.134783","journal-title":"Plant Physiol"},{"issue":"8","key":"5_CR17","doi-asserted-by":"publisher","first-page":"1655","DOI":"10.1093\/pcp\/pcv089","volume":"56","author":"J Ni","year":"2015","unstructured":"Ni J, Gao C, Chen MS, Pan BZ, Ye K, Xu ZF (2015) Gibberellin promotes shoot branching in the perennial woody plant jatropha curcas. Plant Cell Physiol 56(8):1655\u20131666. https:\/\/doi.org\/10.1093\/pcp\/pcv089","journal-title":"Plant Cell Physiol"},{"issue":"2","key":"5_CR18","doi-asserted-by":"publisher","first-page":"E245","DOI":"10.1073\/pnas.1613199114","volume":"114","author":"E Gonzalez-Grandio","year":"2017","unstructured":"Gonzalez-Grandio E, Pajoro A, Franco-Zorrilla JM, Tarancon C, Immink RG, Cubas P (2017) Abscisic acid signaling is controlled by a BRANCHED1\/HD-ZIP I cascade in Arabidopsis axillary buds. Proc Natl Acad Sci U S A 114(2):E245\u2013E254. https:\/\/doi.org\/10.1073\/pnas.1613199114","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"16","key":"5_CR19","doi-asserted-by":"publisher","first-page":"6092","DOI":"10.1073\/pnas.1322045111","volume":"111","author":"MG Mason","year":"2014","unstructured":"Mason MG, Ross JJ, Babst BA, Wienclaw BN, Beveridge CA (2014) Sugar demand, not auxin, is the initial regulator of apical dominance. Proc Natl Acad Sci U S A 111(16):6092\u20136097. https:\/\/doi.org\/10.1073\/pnas.1322045111","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"5_CR20","doi-asserted-by":"publisher","first-page":"2135","DOI":"10.1111\/nph.17006","volume":"229","author":"F Fichtner","year":"2021","unstructured":"Fichtner F, Barbier FF, Annunziata MG, Feil R, Olas JJ, Mueller-Roeber B, Stitt M, Beveridge CA, Lunn JE (2021) Regulation of shoot branching in Arabidopsis by trehalose 6-phosphate. New Phytol 229(4):2135\u20132151. https:\/\/doi.org\/10.1111\/nph.17006","journal-title":"New Phytol"},{"issue":"4","key":"5_CR21","doi-asserted-by":"publisher","first-page":"611","DOI":"10.1111\/tpj.13705","volume":"92","author":"F Fichtner","year":"2017","unstructured":"Fichtner F, Barbier FF, Feil R, Watanabe M, Annunziata MG, Chabikwa TG, Hofgen R, Stitt M, Beveridge CA, Lunn JE (2017) Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.). Plant J 92(4):611\u2013623. https:\/\/doi.org\/10.1111\/tpj.13705","journal-title":"Plant J"},{"issue":"2","key":"5_CR22","doi-asserted-by":"publisher","first-page":"223","DOI":"10.3390\/plants3020223","volume":"3","author":"N Leduc","year":"2014","unstructured":"Leduc N, Roman H, Barbier F, Peron T, Huche-Thelier L, Lothier J, Demotes-Mainard S, Sakr S (2014) Light signaling in bud outgrowth and branching in plants. Plants (Basel) 3(2):223\u2013250. https:\/\/doi.org\/10.3390\/plants3020223","journal-title":"Plants (Basel)"},{"issue":"3","key":"5_CR23","doi-asserted-by":"publisher","first-page":"834","DOI":"10.1105\/tpc.112.108480","volume":"25","author":"E Gonzalez-Grandio","year":"2013","unstructured":"Gonzalez-Grandio E, Poza-Carrion C, Sorzano CO, Cubas P (2013) BRANCHED1 promotes axillary bud dormancy in response to shade in Arabidopsis. Plant Cell 25(3):834\u2013850. https:\/\/doi.org\/10.1105\/tpc.112.108480","journal-title":"Plant Cell"},{"issue":"4","key":"5_CR24","doi-asserted-by":"publisher","first-page":"1914","DOI":"10.1104\/pp.109.148833","volume":"152","author":"SA Finlayson","year":"2010","unstructured":"Finlayson SA, Krishnareddy SR, Kebrom TH, Casal JJ (2010) Phytochrome regulation of branching in Arabidopsis. Plant Physiol 152(4):1914\u20131927. https:\/\/doi.org\/10.1104\/pp.109.148833","journal-title":"Plant Physiol"},{"issue":"1","key":"5_CR25","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1016\/j.cub.2019.11.001","volume":"30","author":"JP Maurya","year":"2020","unstructured":"Maurya JP, Singh RK, Miskolczi PC, Prasad AN, Jonsson K, Wu F, Bhalerao RP (2020) Branching regulator BRC1 mediates photoperiodic control of seasonal growth in hybrid aspen. Curr Biol 30(1):122\u2013126.e122. https:\/\/doi.org\/10.1016\/j.cub.2019.11.001","journal-title":"Curr Biol"},{"issue":"2","key":"5_CR26","doi-asserted-by":"publisher","first-page":"511","DOI":"10.1111\/nph.14346","volume":"213","author":"RK Singh","year":"2017","unstructured":"Singh RK, Svystun T, AlDahmash B, Jonsson AM, Bhalerao RP (2017) Photoperiod- and temperature-mediated control of phenology in trees \u2013 a molecular perspective. New Phytol 213(2):511\u2013524. https:\/\/doi.org\/10.1111\/nph.14346","journal-title":"New Phytol"},{"issue":"9","key":"5_CR27","doi-asserted-by":"publisher","first-page":"1647","DOI":"10.1007\/s00299-015-1815-8","volume":"34","author":"J Xu","year":"2015","unstructured":"Xu J, Zha M, Li Y, Ding Y, Chen L, Ding C, Wang S (2015) The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.). Plant Cell Rep 34(9):1647\u20131662. https:\/\/doi.org\/10.1007\/s00299-015-1815-8","journal-title":"Plant Cell Rep"},{"issue":"1","key":"5_CR28","doi-asserted-by":"publisher","first-page":"384","DOI":"10.1104\/pp.114.242388","volume":"166","author":"M de Jong","year":"2014","unstructured":"de Jong M, George G, Ongaro V, Williamson L, Willetts B, Ljung K, McCulloch H, Leyser O (2014) Auxin and strigolactone signaling are required for modulation of Arabidopsis shoot branching by nitrogen supply. Plant Physiol 166(1):384\u2013395. https:\/\/doi.org\/10.1104\/pp.114.242388","journal-title":"Plant Physiol"},{"issue":"2","key":"5_CR29","doi-asserted-by":"publisher","first-page":"458","DOI":"10.1105\/tpc.106.048934","volume":"19","author":"JA Aguilar-Martinez","year":"2007","unstructured":"Aguilar-Martinez JA, Poza-Carrion C, Cubas P (2007) Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 19(2):458\u2013472. https:\/\/doi.org\/10.1105\/tpc.106.048934","journal-title":"Plant Cell"},{"key":"5_CR30","doi-asserted-by":"publisher","first-page":"76","DOI":"10.3389\/fpls.2019.00076","volume":"10","author":"M Wang","year":"2019","unstructured":"Wang M, Le Moigne MA, Bertheloot J, Crespel L, Perez-Garcia MD, Oge L, Demotes-Mainard S, Hamama L, Daviere JM, Sakr S (2019) BRANCHED1: a key hub of shoot branching. Front Plant Sci 10:76. https:\/\/doi.org\/10.3389\/fpls.2019.00076","journal-title":"Front Plant Sci"},{"issue":"12","key":"5_CR31","doi-asserted-by":"publisher","first-page":"1806","DOI":"10.1242\/bio.021402","volume":"5","author":"T Bennett","year":"2016","unstructured":"Bennett T, Liang Y, Seale M, Ward S, Muller D, Leyser O (2016) Strigolactone regulates shoot development through a core signalling pathway. Biol Open 5(12):1806\u20131820. https:\/\/doi.org\/10.1242\/bio.021402","journal-title":"Biol Open"},{"doi-asserted-by":"publisher","unstructured":"Taranc\u00f3n C, Gonz\u00e1lez-Grand\u00edo E, Oliveros JC, Nicolas M, Cubas P (2017) A conserved carbon starvation response underlies bud dormancy in woody and Herbaceous species. Front Plant Sci 8(788). https:\/\/doi.org\/10.3389\/fpls.2017.00788","key":"5_CR32","DOI":"10.3389\/fpls.2017.00788"},{"issue":"2","key":"5_CR33","doi-asserted-by":"publisher","first-page":"300","DOI":"10.1111\/j.1365-313X.2009.04056.x","volume":"61","author":"JT Vogel","year":"2010","unstructured":"Vogel JT, Walter MH, Giavalisco P, Lytovchenko A, Kohlen W, Charnikhova T, Simkin AJ, Goulet C, Strack D, Bouwmeester HJ, Fernie AR, Klee HJ (2010) SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. Plant J 61(2):300\u2013311. https:\/\/doi.org\/10.1111\/j.1365-313X.2009.04056.x","journal-title":"Plant J"},{"issue":"2","key":"5_CR34","doi-asserted-by":"publisher","first-page":"974","DOI":"10.1104\/pp.110.164640","volume":"155","author":"W Kohlen","year":"2011","unstructured":"Kohlen W, Charnikhova T, Liu Q, Bours R, Domagalska MA, Beguerie S, Verstappen F, Leyser O, Bouwmeester H, Ruyter-Spira C (2011) Strigolactones are transported through the xylem and play a key role in shoot architectural response to phosphate deficiency in nonarbuscular mycorrhizal host Arabidopsis. Plant Physiol 155(2):974\u2013987. https:\/\/doi.org\/10.1104\/pp.110.164640","journal-title":"Plant Physiol"},{"issue":"2","key":"5_CR35","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1104\/pp.15.00486","volume":"168","author":"RS Drummond","year":"2015","unstructured":"Drummond RS, Janssen BJ, Luo Z, Oplaat C, Ledger SE, Wohlers MW, Snowden KC (2015) Environmental control of branching in petunia. Plant Physiol 168(2):735\u2013751. https:\/\/doi.org\/10.1104\/pp.15.00486","journal-title":"Plant Physiol"},{"issue":"1","key":"5_CR36","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1093\/oxfordjournals.aob.a088435","volume":"70","author":"J Vos","year":"1992","unstructured":"Vos J, Biemond H (1992) Effects of nitrogen on the development and growth of the potato plant. 1. Leaf appearance, expansion growth, life spans of leaves and stem branching. Ann Bot 70(1):27\u201335. https:\/\/doi.org\/10.1093\/oxfordjournals.aob.a088435","journal-title":"Ann Bot"},{"issue":"4","key":"5_CR37","doi-asserted-by":"publisher","first-page":"1708","DOI":"10.1093\/plphys\/kiab003","volume":"185","author":"BB Salam","year":"2021","unstructured":"Salam BB, Barbier F, Danieli R, Teper-Bamnolker P, Ziv C, Sp\u00edchal L, Aruchamy K, Shnaider Y, Leibman D, Shaya F, Carmeli-Weissberg M, Gal-On A, Jiang J, Ori N, Beveridge C, Eshel D (2021) Sucrose promotes stem branching through cytokinin. Plant Physiol 185(4):1708\u20131721. https:\/\/doi.org\/10.1093\/plphys\/kiab003","journal-title":"Plant Physiol"},{"issue":"2","key":"5_CR38","doi-asserted-by":"publisher","first-page":"734","DOI":"10.1104\/pp.17.00995","volume":"175","author":"BB Salam","year":"2017","unstructured":"Salam BB, Malka SK, Zhu X, Gong H, Ziv C, Teper-Bamnolker P, Ori N, Jiang J, Eshel D (2017) Etiolated stem branching is a result of systemic signaling associated with sucrose level. Plant Physiol 175(2):734\u2013745. https:\/\/doi.org\/10.1104\/pp.17.00995","journal-title":"Plant Physiol"},{"issue":"2","key":"5_CR39","doi-asserted-by":"publisher","first-page":"151","DOI":"10.1007\/BF02358227","volume":"32","author":"PC Struik","year":"1989","unstructured":"Struik PC, Geertsema J, Custers CHMG (1989) Effects of shoot, root and stolon temperature on the development of the potato (Solanum tuberosum L.) plant. III. Development of tubers. Potato Res 32(2):151\u2013158. https:\/\/doi.org\/10.1007\/BF02358227","journal-title":"Potato Res"},{"issue":"4","key":"5_CR40","doi-asserted-by":"publisher","first-page":"701","DOI":"10.1111\/j.1365-313X.2011.04629.x","volume":"67","author":"M Mart\u00edn-Trillo","year":"2011","unstructured":"Mart\u00edn-Trillo M, Grand\u00edo EG, Serra F, Marcel F, Rodr\u00edguez-Buey ML, Schmitz G, Theres K, Bendahmane A, Dopazo H, Cubas P (2011) Role of tomato BRANCHED1-like genes in the control of shoot branching. Plant J 67(4):701\u2013714. https:\/\/doi.org\/10.1111\/j.1365-313X.2011.04629.x","journal-title":"Plant J"}],"container-title":["Methods in Molecular Biology","Environmental Responses in Plants"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-0716-2297-1_5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,25]],"date-time":"2022-04-25T15:15:50Z","timestamp":1650899750000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-0716-2297-1_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022]]},"ISBN":["9781071622964","9781071622971"],"references-count":40,"URL":"https:\/\/doi.org\/10.1007\/978-1-0716-2297-1_5","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"type":"print","value":"1064-3745"},{"type":"electronic","value":"1940-6029"}],"subject":[],"published":{"date-parts":[[2022]]},"assertion":[{"value":"26 April 2022","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}