{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T00:02:51Z","timestamp":1743033771082,"version":"3.40.3"},"publisher-location":"New York, NY","reference-count":30,"publisher":"Springer US","isbn-type":[{"type":"print","value":"9781493998760"},{"type":"electronic","value":"9781493998777"}],"license":[{"start":{"date-parts":[[2019,10,5]],"date-time":"2019-10-05T00:00:00Z","timestamp":1570233600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020]]},"DOI":"10.1007\/978-1-4939-9877-7_2","type":"book-chapter","created":{"date-parts":[[2019,10,4]],"date-time":"2019-10-04T07:03:40Z","timestamp":1570172620000},"page":"21-38","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Isolation and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health"],"prefix":"10.1007","author":[{"given":"Ana R.","family":"Freitas","sequence":"first","affiliation":[]},{"given":"Carla","family":"Novais","sequence":"additional","affiliation":[]},{"given":"Lu\u00edsa","family":"Peixe","sequence":"additional","affiliation":[]},{"given":"Teresa M.","family":"Coque","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2019,10,5]]},"reference":[{"key":"2_CR1","doi-asserted-by":"publisher","first-page":"1513","DOI":"10.1093\/nar\/7.6.1513","volume":"7","author":"HC Birnboim","year":"1979","unstructured":"Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513\u20131523","journal-title":"Nucleic Acids Res"},{"key":"2_CR2","doi-asserted-by":"crossref","first-page":"1365","DOI":"10.1128\/JB.145.3.1365-1373.1981","volume":"145","author":"CA Kado","year":"1981","unstructured":"Kado CA, Liu S (1981) Rapid procedure for detection and isolation of large and small plasmids. J Bacteriol 145:1365\u20131373","journal-title":"J Bacteriol"},{"key":"2_CR3","doi-asserted-by":"publisher","first-page":"603","DOI":"10.1016\/0006-291X(76)91188-8","volume":"68","author":"BM Chassy","year":"1976","unstructured":"Chassy BM (1976) A gentle method for the lysis of oral streptococci. Biochem Biophys Res Commun 68:603\u2013608","journal-title":"Biochem Biophys Res Commun"},{"key":"2_CR4","doi-asserted-by":"publisher","first-page":"2446","DOI":"10.1128\/AAC.39.11.2446","volume":"39","author":"S Handwerger","year":"1995","unstructured":"Handwerger S, Skoble J (1995) Identification of chromosomal mobile element conferring high-level vancomycin resistance in Enterococcus faecium. Antimicrob Agents Chemother 39:2446\u20132453","journal-title":"Antimicrob Agents Chemother"},{"key":"2_CR5","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0060589","volume":"8","author":"AR Freitas","year":"2013","unstructured":"Freitas AR, Tedim AP, Novais C et al (2013) Microevolutionary events involving narrow host plasmids influences local fixation of vancomycin-resistance in Enterococcus populations. PLoS One 8:e60589","journal-title":"PLoS One"},{"key":"2_CR6","series-title":"Methods in molecular medicine","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1385\/0-89603-498-4:51","volume-title":"Molecular bacteriology: protocols and clinical applications","author":"AP Johnson","year":"1998","unstructured":"Johnson AP, Woodford N (1998) Plasmid analysis. In: Woodford N, Johnson AP (eds) Molecular bacteriology: protocols and clinical applications, Methods in molecular medicine. Humana Press, Inc., Totowa, NJ, pp 51\u201362"},{"key":"2_CR7","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1016\/0003-2697(76)90338-9","volume":"76","author":"TC Currier","year":"1976","unstructured":"Currier TC, Nester EW (1976) Isolation of covalently closed circular DNA of high molecular weight from bacteria. Anal Biochem 76:431\u2013441","journal-title":"Anal Biochem"},{"key":"2_CR8","first-page":"6.50","volume-title":"Molecular cloning: a laboratory manual","author":"J Sambrook","year":"1989","unstructured":"Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp 6.50\u20136.62"},{"key":"2_CR9","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1128\/AEM.46.3.549-552.1983","volume":"46","author":"DG Anderson","year":"1983","unstructured":"Anderson DG, Mckay LL (1983) Simple and rapid method for isolating large plasmid DNA from lactic streptococci. Appl Environ Microbiol 46:549\u2013552","journal-title":"Appl Environ Microbiol"},{"key":"2_CR10","doi-asserted-by":"publisher","first-page":"584","DOI":"10.1016\/0147-619X(78)90016-1","volume":"1","author":"T Eckhardt","year":"1978","unstructured":"Eckhardt T (1978) A rapid method for the identification of plasmid desoxyribonucleic acid in bacteria. Plasmid 1:584\u2013588","journal-title":"Plasmid"},{"key":"2_CR11","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1006\/abio.1995.1220","volume":"226","author":"BM Barton","year":"1995","unstructured":"Barton BM, Harding GP, Zuccarelli AJ (1995) A general method for detecting and sizing large plasmids. Anal Biochem 226:235\u2013240","journal-title":"Anal Biochem"},{"key":"2_CR12","volume-title":"Enterococci: from commensals to leading causes of drug resistant infection","author":"DB Clewell","year":"2014","unstructured":"Clewell DB, Weaver KE, Coque TM et al (2014) Extrachromosomal and Mobile Elements in Enterococci: Transmission, Maintenance, and Epidemiology. In: Gilmore MS, Clewell DB, Ike Y, Shankar N (eds) Enterococci: from commensals to leading causes of drug resistant infection. Massachusetts Eye and Ear Infirmary, Boston, MA"},{"key":"2_CR13","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/j.mimet.2009.10.012","volume":"80","author":"LB Jensen","year":"2010","unstructured":"Jensen LB, Garcia-Migura L, Valenzuela AJS et al (2010) A classification system for plasmids from enterococci and other Gram-positive bacteria. J Microbiol Methods 80:25\u201343","journal-title":"J Microbiol Methods"},{"key":"2_CR14","doi-asserted-by":"publisher","first-page":"5948","DOI":"10.1128\/AEM.00870-12","volume":"78","author":"C Lozano","year":"2012","unstructured":"Lozano C, Garc\u00eda-Migura L, Aspiroz C et al (2012) Expansion of a plasmid classification system for Gram-positive bacteria and determination of the diversity of plasmids in Staphylococcus aureus strains of human, animal and food origins. Appl Environ Microbiol 78:5948\u20135955","journal-title":"Appl Environ Microbiol"},{"key":"2_CR15","doi-asserted-by":"publisher","first-page":"936","DOI":"10.1111\/j.1574-6976.2011.00291.x","volume":"35","author":"MP Garcill\u00e1n-Barcia","year":"2011","unstructured":"Garcill\u00e1n-Barcia MP, Alvarado A, De la Cruz F (2011) Identification of bacterial plasmids based on mobility and plasmid population biology. FEMS Microbiol Rev 35:936\u2013956","journal-title":"FEMS Microbiol Rev"},{"key":"2_CR16","doi-asserted-by":"publisher","first-page":"3351","DOI":"10.1093\/jac\/dkw312","volume":"71","author":"AR Freitas","year":"2016","unstructured":"Freitas AR, Tedim AP, Francia MV et al (2016) Multilevel population genetic analysis of vanA and vanB Enterococcus faecium causing nosocomial outbreaks in 27 countries (1986\u20132012). J Antimicrob Chemother 71:3351\u20133366","journal-title":"J Antimicrob Chemother"},{"key":"2_CR17","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1534\/g3.111.000760","volume":"1","author":"JE Shearer","year":"2011","unstructured":"Shearer JE, Wireman J, Hostetler J et al (2011) Major families of multiresistant plasmids from geographically and epidemiologically diverse staphylococci. G3 (Bethesda) 1:581\u2013591","journal-title":"G3 (Bethesda)"},{"key":"2_CR18","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1004766","volume":"10","author":"VF Lanza","year":"2014","unstructured":"Lanza VF, de Toro M, Garcill\u00e1n-Barcia MP et al (2014) Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences. PLoS Genet 10:e1004766","journal-title":"PLoS Genet"},{"key":"2_CR19","volume-title":"Molecular bacteriology. methods in molecular medicine\u2122, vol 15","author":"TM Coque","year":"1998","unstructured":"Coque TM, Seetulsingh P, Singh KV, Murray BE (1998) Application of molecular techniques to the study of nosocomial infections caused by Enterococci. In: Woodford N, Johnson AP (eds) Molecular bacteriology. methods in molecular medicine\u2122, vol 15. Humana Press, New York, NY"},{"key":"2_CR20","doi-asserted-by":"publisher","first-page":"5452","DOI":"10.1073\/pnas.1116410109","volume":"109","author":"AB Kav","year":"2012","unstructured":"Kav AB, Sasson G, Jami E et al (2012) Insights into the bovine rumen plasmidome. Proc Natl Acad Sci 109:5452\u20135457","journal-title":"Proc Natl Acad Sci"},{"key":"2_CR21","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/s40168-017-0387-y","volume":"6","author":"VF Lanza","year":"2018","unstructured":"Lanza VF, Baquero F, Mart\u00ednez JL et al (2018) In-depth resistome analysis by targeted metagenomics. Microbiome 6:11","journal-title":"Microbiome"},{"key":"2_CR22","doi-asserted-by":"crossref","unstructured":"Lanza VF, Tedim AP, Mart\u00ednez JL et al (2015) The plasmidome of Firmicutes: impact on the emergence and the spread of resistance to antimicrobials. Microbiol Spectr 3. PLAS-0039-2014 Review","DOI":"10.1128\/microbiolspec.PLAS-0039-2014"},{"key":"2_CR23","series-title":"Methods in Molecular Biology","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-62703-736-5_9","volume-title":"Staphylococcus epidermidis: methods and protocols","author":"JK Lindgren","year":"2014","unstructured":"Lindgren JK (2014) Isolation of chromosomal of plasmid DNA from Staphylococcus epidermidis. In: Fey PD (ed) Staphylococcus epidermidis: methods and protocols, Methods in Molecular Biology, vol 1106. Springer, Berlin"},{"key":"2_CR24","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1007\/7651_2014_184","volume-title":"The genetic manipulations of Staphylococci. Methods in Molecular Biology","author":"KL Krausz","year":"2016","unstructured":"Krausz KL, Bose JL (2016) Rapid isolation of DNA from Staphylococcus. In: Bose JL (ed) The genetic manipulations of Staphylococci. Methods in Molecular Biology, vol 1373. Humana Press, New York, NY, pp 59\u201362"},{"key":"2_CR25","doi-asserted-by":"crossref","unstructured":"Fern\u00e1ndez-de-Bobadilla MD, Coque TM, Lanza VF (2020) Statistical analysis of accessory genome. In: de la Cruz F (ed) Horizontal gene transfer: methods and protocols. Springer, New York","DOI":"10.1007\/978-1-4939-9877-7_24"},{"key":"2_CR26","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1016\/S0022-2836(75)80083-0","volume":"98","author":"EM Southern","year":"1975","unstructured":"Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503\u2013517","journal-title":"J Mol Biol"},{"key":"2_CR27","doi-asserted-by":"crossref","first-page":"3527","DOI":"10.1128\/AEM.62.9.3527-3529.1996","volume":"62","author":"AJ Vriesema","year":"1996","unstructured":"Vriesema AJ, Zaat SA, Dankert J (1996) A simple procedure for isolation of cloning vectors and endogenous plasmids from viridans group streptococci and Staphylococcus aureus. Appl Environ Microbiol 62:3527\u20133529","journal-title":"Appl Environ Microbiol"},{"key":"2_CR28","doi-asserted-by":"crossref","first-page":"2233","DOI":"10.1128\/JCM.33.9.2233-2239.1995","volume":"33","author":"FC Tenover","year":"1995","unstructured":"Tenover FC, Arbeit RD, Goering RV et al (1995) Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33:2233\u20132239","journal-title":"J Clin Microbiol"},{"key":"2_CR29","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1016\/0147-619X(78)90056-2","volume":"1","author":"FL Macrina","year":"1978","unstructured":"Macrina FL, Kopecko DJ, Jones KR et al (1978) A multiple plasmid-containing Escherichia coli strain: convenient source of size reference plasmid molecules. Plasmid 1:417\u2013420","journal-title":"Plasmid"},{"key":"2_CR30","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1017\/S0022172400063609","volume":"97","author":"EJ Threlfall","year":"1986","unstructured":"Threlfall EJ, Rowe B, Ferguson JL et al (1986) Characterization of plasmids conferring resistance to gentamicin and apramycin in strains of Salmonella typhimurium phage type 204c isolated in Britain. J Hyg (Lond) 97:419\u2013426","journal-title":"J Hyg (Lond)"}],"container-title":["Methods in Molecular Biology","Horizontal Gene Transfer"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-4939-9877-7_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,1,24]],"date-time":"2021-01-24T04:10:25Z","timestamp":1611461425000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-1-4939-9877-7_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,10,5]]},"ISBN":["9781493998760","9781493998777"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/978-1-4939-9877-7_2","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"type":"print","value":"1064-3745"},{"type":"electronic","value":"1940-6029"}],"subject":[],"published":{"date-parts":[[2019,10,5]]},"assertion":[{"value":"5 October 2019","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}