{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T14:49:40Z","timestamp":1742914180267,"version":"3.40.3"},"publisher-location":"Cham","reference-count":26,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319608150"},{"type":"electronic","value":"9783319608167"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-60816-7_28","type":"book-chapter","created":{"date-parts":[[2017,6,20]],"date-time":"2017-06-20T01:42:40Z","timestamp":1497922960000},"page":"228-236","source":"Crossref","is-referenced-by-count":4,"title":["On the Role of Inverted Repeats in DNA Sequence Similarity"],"prefix":"10.1007","author":[{"given":"Morteza","family":"Hosseini","sequence":"first","affiliation":[]},{"given":"Diogo","family":"Pratas","sequence":"additional","affiliation":[]},{"given":"Armando J.","family":"Pinho","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,6,21]]},"reference":[{"key":"28_CR1","doi-asserted-by":"crossref","first-page":"728","DOI":"10.1126\/science.1197891","volume":"331","author":"S Kahn","year":"2011","unstructured":"Kahn, S.: On the future of genomic data. Science 331, 728\u2013729 (2011)","journal-title":"Science"},{"unstructured":"Alberti, C., et al.: Investigation on genomic information compression and storage. ISO\/IEC JTC 1\/SC 29\/WG 11 N15346, pp. 1\u201328 (2015)","key":"28_CR2"},{"key":"28_CR3","doi-asserted-by":"crossref","first-page":"390","DOI":"10.1093\/bib\/bbt088","volume":"15","author":"R Giancarlo","year":"2014","unstructured":"Giancarlo, R., et al.: Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Briefings Bioinform. 15, 390\u2013406 (2014)","journal-title":"Briefings Bioinform."},{"key":"28_CR4","doi-asserted-by":"crossref","first-page":"56","DOI":"10.3390\/info7040056","volume":"7","author":"M Hosseini","year":"2016","unstructured":"Hosseini, M., et al.: A survey on data compression methods for biological sequences. Information 7, 56 (2016)","journal-title":"Information"},{"key":"28_CR5","volume-title":"Introduction to Bioinformatics","author":"A Lesk","year":"2013","unstructured":"Lesk, A.: Introduction to Bioinformatics. Oxford University Press, Oxford (2013)"},{"unstructured":"Pinho, A.J., et al.: Inverted-repeats-aware finite-context models for DNA coding. In: 2008 16th European Signal Processing Conference, pp. 1\u20135 (2008)","key":"28_CR6"},{"issue":"12","key":"28_CR7","doi-asserted-by":"crossref","first-page":"e4047","DOI":"10.1371\/journal.pone.0004047","volume":"3","author":"J Lee","year":"2008","unstructured":"Lee, J., et al.: Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. PLoS One 3(12), e4047 (2008)","journal-title":"PLoS One"},{"issue":"4","key":"28_CR8","doi-asserted-by":"crossref","first-page":"1523","DOI":"10.1109\/TIT.2005.844059","volume":"51","author":"R Cilibrasi","year":"2005","unstructured":"Cilibrasi, R., Vit\u00e1nyi, P.M.B.: Clustering by compression. IEEE Trans. Inf. Theory 51(4), 1523\u20131545 (2005)","journal-title":"IEEE Trans. Inf. Theory"},{"doi-asserted-by":"crossref","unstructured":"Pratas, D., Pinho, A.J.: A conditional compression distance that unveils insights of the genomic evolution. In: Data Compression Conference, p. 421 (2014)","key":"28_CR9","DOI":"10.1109\/DCC.2014.58"},{"doi-asserted-by":"crossref","unstructured":"Nikvand, N., Wang, Z.: Generic image similarity based on Kolmogorov complexity. In: IEEE International Conference on Image Processing, pp. 309\u2013312 (2010)","key":"28_CR10","DOI":"10.1109\/ICIP.2010.5653405"},{"doi-asserted-by":"crossref","unstructured":"Pinho, A.J., et al.: Authorship attribution using relative compression. In: Data Compression Conference, pp. 329\u2013338 (2016)","key":"28_CR11","DOI":"10.1109\/DCC.2016.53"},{"issue":"1","key":"28_CR12","first-page":"1","volume":"1","author":"A Kolmogorov","year":"1965","unstructured":"Kolmogorov, A.: Three approaches to the quantitative definition of information. Probl. Inf. Transm. 1(1), 1\u20137 (1965)","journal-title":"Probl. Inf. Transm."},{"key":"28_CR13","volume-title":"An Introduction to Kolmogorov Complexity and Its Applications","author":"M Li","year":"2009","unstructured":"Li, M., Vit\u00e1nyi, P.: An Introduction to Kolmogorov Complexity and Its Applications, 3rd edn. Springer, New York (2009)","edition":"3"},{"key":"28_CR14","volume-title":"Introduction to Data Compression","author":"K Sayood","year":"2012","unstructured":"Sayood, K.: Introduction to Data Compression, 4th edn. Morgan Kaufmann, Waltham (2012)","edition":"4"},{"doi-asserted-by":"crossref","unstructured":"Pinho, A.J., et al.: Information profiles for DNA pattern discovery. In: Data Compression Conference, p. 420 (2014)","key":"28_CR15","DOI":"10.1109\/DCC.2014.54"},{"key":"28_CR16","doi-asserted-by":"crossref","first-page":"10203","DOI":"10.1038\/srep10203","volume":"5","author":"D Pratas","year":"2015","unstructured":"Pratas, D., et al.: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences. Sci. Rep. 5, 10203 (2015)","journal-title":"Sci. Rep."},{"key":"28_CR17","doi-asserted-by":"crossref","first-page":"e21588","DOI":"10.1371\/journal.pone.0021588","volume":"6","author":"AJ Pinho","year":"2011","unstructured":"Pinho, A.J., et al.: On the representability of complete genomes by multiple competing finite-context (Markov) models. PloS One 6, e21588 (2011)","journal-title":"PloS One"},{"unstructured":"Hosseini, M.: 21 March 2017. \ngithub.com\/smortezah\/Phoenix","key":"28_CR18"},{"unstructured":"Pratas, D.: 21 March 2017. \ngithub.com\/pratas\/goose","key":"28_CR19"},{"key":"28_CR20","doi-asserted-by":"crossref","first-page":"9051","DOI":"10.1073\/pnas.88.20.9051","volume":"88","author":"J Ijdo","year":"1991","unstructured":"Ijdo, J., et al.: Origin of human chromosome 2: an ancestral telomere-telomere fusion. PNAS 88, 9051\u20139055 (1991)","journal-title":"PNAS"},{"issue":"7280","key":"28_CR21","doi-asserted-by":"crossref","first-page":"536","DOI":"10.1038\/nature08700","volume":"463","author":"J Hughes","year":"2010","unstructured":"Hughes, J., et al.: Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Nature 463(7280), 536\u2013539 (2010)","journal-title":"Nature"},{"issue":"1","key":"28_CR22","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1002\/humu.20116","volume":"25","author":"H Kehrer-Sawatzki","year":"2005","unstructured":"Kehrer-Sawatzki, H., et al.: Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes). Hum. Mutat. 25(1), 45\u201355 (2005)","journal-title":"Hum. Mutat."},{"key":"28_CR23","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1038\/nature04072","volume":"437","author":"TS Mikkelsen","year":"2005","unstructured":"Mikkelsen, T.S.: Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69\u201387 (2005)","journal-title":"Nature"},{"issue":"2","key":"28_CR24","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1038\/nrg3366","volume":"14","author":"D Bachtrog","year":"2013","unstructured":"Bachtrog, D.: Y-chromosome evolution: emerging insights into processes of Y-chro-mosome degeneration. Nat. Rev. Genet. 14(2), 113\u2013124 (2013)","journal-title":"Nat. Rev. Genet."},{"issue":"1","key":"28_CR25","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1038\/nrg705","volume":"3","author":"RV Samonte","year":"2002","unstructured":"Samonte, R.V., Eichler, E.E.: Segmental duplications and the evolution of the primate genome. Nat. Rev. Genet. 3(1), 65\u201372 (2002)","journal-title":"Nat. Rev. Genet."},{"issue":"9","key":"28_CR26","doi-asserted-by":"crossref","first-page":"e1000475","DOI":"10.1371\/journal.pbio.1000475","volume":"8","author":"RA Dalloul","year":"2010","unstructured":"Dalloul, R.A., et al.: Multi-platform next-generation sequencing of the domestic Turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol. 8(9), e1000475 (2010)","journal-title":"PLoS Biol."}],"container-title":["Advances in Intelligent Systems and Computing","11th International Conference on Practical Applications of Computational Biology & Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-60816-7_28","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,7,20]],"date-time":"2017-07-20T22:24:56Z","timestamp":1500589496000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-60816-7_28"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319608150","9783319608167"],"references-count":26,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-60816-7_28","relation":{},"ISSN":["2194-5357","2194-5365"],"issn-type":[{"type":"print","value":"2194-5357"},{"type":"electronic","value":"2194-5365"}],"subject":[],"published":{"date-parts":[[2017]]}}}