{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,10]],"date-time":"2024-09-10T17:09:23Z","timestamp":1725988163571},"publisher-location":"Cham","reference-count":12,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319987019"},{"type":"electronic","value":"9783319987026"}],"license":[{"start":{"date-parts":[[2018,8,17]],"date-time":"2018-08-17T00:00:00Z","timestamp":1534464000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-319-98702-6_11","type":"book-chapter","created":{"date-parts":[[2018,8,16]],"date-time":"2018-08-16T05:27:55Z","timestamp":1534397275000},"page":"88-96","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees"],"prefix":"10.1007","author":[{"given":"Hugo","family":"L\u00f3pez-Fern\u00e1ndez","sequence":"first","affiliation":[]},{"given":"Pedro","family":"Duque","sequence":"additional","affiliation":[]},{"given":"S\u00edlvia","family":"Henriques","sequence":"additional","affiliation":[]},{"given":"No\u00e9","family":"V\u00e1zquez","sequence":"additional","affiliation":[]},{"given":"Florentino","family":"Fdez-Riverola","sequence":"additional","affiliation":[]},{"given":"Cristina P.","family":"Vieira","sequence":"additional","affiliation":[]},{"given":"Miguel","family":"Reboiro-Jato","sequence":"additional","affiliation":[]},{"given":"Jorge","family":"Vieira","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,8,17]]},"reference":[{"key":"11_CR1","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1016\/j.abb.2015.02.002","volume":"569","author":"AN Patananan","year":"2015","unstructured":"Patananan, A.N., Budenholzer, L.M., Pedraza, M.E., Torres, E.R., Adler, L.N., Clarke, S.G.: The invertebrate Caenorhabditis elegans biosynthesizes ascorbate. Arch. Biochem. Biophys. 569, 32\u201344 (2015)","journal-title":"Arch. Biochem. Biophys."},{"key":"11_CR2","doi-asserted-by":"publisher","first-page":"371","DOI":"10.2174\/138920211796429736","volume":"12","author":"G Drouin","year":"2011","unstructured":"Drouin, G., Godin, J.-R., Page, B.: The genetics of vitamin C loss in vertebrates. Curr. Genomics 12, 371\u2013378 (2011)","journal-title":"Curr. Genomics"},{"key":"11_CR3","doi-asserted-by":"publisher","first-page":"3199","DOI":"10.1016\/j.febslet.2009.09.004","volume":"583","author":"NGH Leferink","year":"2009","unstructured":"Leferink, N.G.H., Jose, M.D.F., van den Berg, W.A.M., van Berkel, W.J.H.: Functional assignment of Glu386 and Arg388 in the active site of l-galactono-\u03b3-lactone dehydrogenase. FEBS Lett. 583, 3199\u20133203 (2009)","journal-title":"FEBS Lett."},{"key":"11_CR4","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar, S., Stecher, G., Tamura, K.: MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33, 1870\u20131874 (2016)","journal-title":"Mol. Biol. Evol."},{"key":"11_CR5","doi-asserted-by":"publisher","first-page":"200","DOI":"10.1515\/jib-2012-200","volume":"9","author":"D Reboiro-Jato","year":"2012","unstructured":"Reboiro-Jato, D., Reboiro-Jato, M., Fdez-Riverola, F., Vieira, C.P., Fonseca, N.A., Vieira, J.: ADOPS\u2013Automatic Detection Of Positively Selected Sites. J. Integr. Bioinform. 9, 200 (2012)","journal-title":"J. Integr. Bioinform."},{"key":"11_CR6","doi-asserted-by":"crossref","unstructured":"Wheeler, G., Ishikawa, T., Pornsaksit, V., Smirnoff, N.: Evolution of alternative biosynthetic pathways for vitamin C following plastid acquisition in photosynthetic eukaryotes. eLife. 4 (2015)","DOI":"10.7554\/eLife.06369"},{"key":"11_CR7","doi-asserted-by":"publisher","first-page":"458","DOI":"10.1126\/science.1214544","volume":"334","author":"KM Helgen","year":"2011","unstructured":"Helgen, K.M.: The mammal family tree. Science 334, 458\u2013459 (2011)","journal-title":"Science"},{"key":"11_CR8","doi-asserted-by":"publisher","first-page":"e27114","DOI":"10.1371\/journal.pone.0027114","volume":"6","author":"J Cui","year":"2011","unstructured":"Cui, J., Yuan, X., Wang, L., Jones, G., Zhang, S.: Recent loss of vitamin C biosynthesis ability in bats. PLoS ONE 6, e27114 (2011)","journal-title":"PLoS ONE"},{"key":"11_CR9","doi-asserted-by":"publisher","first-page":"1064","DOI":"10.1038\/nature06967","volume":"453","author":"NH Putnam","year":"2008","unstructured":"Putnam, N.H., Butts, T., Ferrier, D.E.K., Furlong, R.F., Hellsten, U., Kawashima, T., Robinson-Rechavi, M., Shoguchi, E., Terry, A., Yu, J.-K., Benito-Guti\u00e9rrez, E., Dubchak, I., Garcia-Fern\u00e0ndez, J., Gibson-Brown, J.J., Grigoriev, I.V., Horton, A.C., de Jong, P.J., Jurka, J., Kapitonov, V.V., Kohara, Y., Kuroki, Y., Lindquist, E., Lucas, S., Osoegawa, K., Pennacchio, L.A., Salamov, A.A., Satou, Y., Sauka-Spengler, T., Schmutz, J., Shin-I, T., Toyoda, A., Bronner-Fraser, M., Fujiyama, A., Holland, L.Z., Holland, P.W.H., Satoh, N., Rokhsar, D.S.: The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064\u20131071 (2008)","journal-title":"Nature"},{"key":"11_CR10","doi-asserted-by":"publisher","first-page":"e314","DOI":"10.1371\/journal.pbio.0030314","volume":"3","author":"P Dehal","year":"2005","unstructured":"Dehal, P., Boore, J.L.: Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 3, e314 (2005)","journal-title":"PLoS Biol."},{"key":"11_CR11","doi-asserted-by":"publisher","first-page":"382","DOI":"10.1101\/gr.640303","volume":"13","author":"JS Taylor","year":"2003","unstructured":"Taylor, J.S.: Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res. 13, 382\u2013390 (2003)","journal-title":"Genome Res."},{"key":"11_CR12","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1038\/nature19840","volume":"538","author":"AM Session","year":"2016","unstructured":"Session, A.M., Uno, Y., Kwon, T., Chapman, J.A., Toyoda, A., Takahashi, S., Fukui, A., Hikosaka, A., Suzuki, A., Kondo, M., van Heeringen, S.J., Quigley, I., Heinz, S., Ogino, H., Ochi, H., Hellsten, U., Lyons, J.B., Simakov, O., Putnam, N., Stites, J., Kuroki, Y., Tanaka, T., Michiue, T., Watanabe, M., Bogdanovic, O., Lister, R., Georgiou, G., Paranjpe, S.S., van Kruijsbergen, I., Shu, S., Carlson, J., Kinoshita, T., Ohta, Y., Mawaribuchi, S., Jenkins, J., Grimwood, J., Schmutz, J., Mitros, T., Mozaffari, S.V., Suzuki, Y., Haramoto, Y., Yamamoto, T.S., Takagi, C., Heald, R., Miller, K., Haudenschild, C., Kitzman, J., Nakayama, T., Izutsu, Y., Robert, J., Fortriede, J., Burns, K., Lotay, V., Karimi, K., Yasuoka, Y., Dichmann, D.S., Flajnik, M.F., Houston, D.W., Shendure, J., DuPasquier, L., Vize, P.D., Zorn, A.M., Ito, M., Marcotte, E.M., Wallingford, J.B., Ito, Y., Asashima, M., Ueno, N., Matsuda, Y., Veenstra, G.J.C., Fujiyama, A., Harland, R.M., Taira, M., Rokhsar, D.S.: Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538, 336\u2013343 (2016)","journal-title":"Nature"}],"container-title":["Advances in Intelligent Systems and Computing","Practical Applications of Computational Biology and Bioinformatics, 12th International Conference"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-98702-6_11","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,8,16]],"date-time":"2018-08-16T05:39:00Z","timestamp":1534397940000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-98702-6_11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,8,17]]},"ISBN":["9783319987019","9783319987026"],"references-count":12,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-98702-6_11","relation":{},"ISSN":["2194-5357","2194-5365"],"issn-type":[{"type":"print","value":"2194-5357"},{"type":"electronic","value":"2194-5365"}],"subject":[],"published":{"date-parts":[[2018,8,17]]}}}