{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T15:57:44Z","timestamp":1772899064434,"version":"3.50.1"},"publisher-location":"Berlin, Heidelberg","reference-count":118,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783662672723","type":"print"},{"value":"9783662672730","type":"electronic"}],"license":[{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2023,10,1]],"date-time":"2023-10-01T00:00:00Z","timestamp":1696118400000},"content-version":"vor","delay-in-days":273,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Coffee is one of the most important cash crops and beverages. Several diseases caused by fungi, bacteria, and viruses can affect coffee plantations and compromise production. Coffee leaf rust (CLR), caused by the biotrophic fungus <jats:italic>Hemileia vastatrix<\/jats:italic> is the top fungal disease, representing a permanent threat to sustainable Arabica coffee production for more than a century. This review provides a comprehensive survey of the most common coffee diseases, their importance, and geographic distribution, with an emphasis on coffee leaf rust. Summing up the progress obtained so far from different research fields on the coffee\u2013<jats:italic>H. vastatrix<\/jats:italic> interaction, we revisited the pathogen genetic diversity and population dynamics, and the complex mechanisms underlying plant resistance\/immunity. We also highlight how new advanced technologies can provide avenues for a deeper understanding of this pathosystem, which is crucial for devising more reliable and long-term strategies for disease control.<\/jats:p>","DOI":"10.1007\/978-3-662-67273-0_2","type":"book-chapter","created":{"date-parts":[[2023,9,30]],"date-time":"2023-09-30T05:01:31Z","timestamp":1696050091000},"page":"19-38","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Coffee Leaf Rust Resistance: An Overview"],"prefix":"10.1007","author":[{"given":"Leonor","family":"Guerra-Guimar\u00e3es","sequence":"first","affiliation":[]},{"given":"In\u00eas","family":"Diniz","sequence":"additional","affiliation":[]},{"given":"Helena Gil","family":"Azinheira","sequence":"additional","affiliation":[]},{"given":"Andreia","family":"Loureiro","sequence":"additional","affiliation":[]},{"given":"Ana Paula","family":"Pereira","sequence":"additional","affiliation":[]},{"given":"S\u00edlvia","family":"Tavares","sequence":"additional","affiliation":[]},{"given":"Dora","family":"Batista","sequence":"additional","affiliation":[]},{"given":"V\u00edtor","family":"V\u00e1rzea","sequence":"additional","affiliation":[]},{"given":"Maria do C\u00e9u Lavado da","family":"Silva","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2023,10,1]]},"reference":[{"key":"2_CR1","volume-title":"Plant pathology","author":"GN Agrios","year":"2005","unstructured":"Agrios GN (2005) Plant pathology. Academic Press, New York"},{"key":"2_CR2","first-page":"151","volume":"23","author":"JF Amaral","year":"1956","unstructured":"Amaral JF, Teixeira C, Pinheiro ED (1956) A bact\u00e9ria causadora da mancha aureolada do cafeeiro. Arq Inst Biol 23:151\u2013155","journal-title":"Arq Inst Biol"},{"key":"2_CR3","doi-asserted-by":"crossref","unstructured":"Amorim LL, da Fonseca Dos Santos R, Neto JPB, Guida-Santos M, Crovella S, Benko-Iseppon AM (2017) Transcription factors involved in plant resistance to pathogens. Curr Protein Pept Sci 18(4):335\u2013351","DOI":"10.2174\/1389203717666160619185308"},{"key":"2_CR4","doi-asserted-by":"publisher","first-page":"339","DOI":"10.3390\/genes9070339","volume":"9","author":"EJ Andersen","year":"2018","unstructured":"Andersen EJ, Ali S, Byamukama E, Yen Y, Nepal MP (2018) Disease resistance mechanisms in plants. Genes 9:339","journal-title":"Genes"},{"key":"2_CR5","doi-asserted-by":"publisher","first-page":"727","DOI":"10.1007\/s12600-021-00902-2","volume":"49","author":"CCL Andrade","year":"2021","unstructured":"Andrade CCL, Resende MLV, Moreira SI, Mathioni SM, Botelho DMS, Costa JR, Andrade ACM, Alves E (2021) Infection process and defense response of two distinct symptoms of Cercospora leaf spot in coffee leaves. Phytoparasitica 49:727\u2013737","journal-title":"Phytoparasitica"},{"issue":"8","key":"2_CR6","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1080\/03235408.2022.2081525","volume":"55","author":"A Assefa","year":"2022","unstructured":"Assefa A, Balcha W, Kloos H (2022) Assessment of spatio-temporal patterns of coffee wilt disease, constraints on coffee production and its management practices in Berbere district, Bale Zone, southeastern Ethiopia. Arch Phytopathol Plant Prot 55(8):991\u20131013. https:\/\/doi.org\/10.1080\/03235408.2022.2081525","journal-title":"Arch Phytopathol Plant Prot"},{"key":"2_CR7","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1007\/s12571-015-0446-9","volume":"7","author":"J Avelino","year":"2015","unstructured":"Avelino J, Cristancho M, Georgiou S, Imbach P, Aguilar L, Bornemann G, L\u00e4derach P, Anzueto F, Hruska AJ, Morales C (2015) The coffee rust crises in Colombia and Central America (2008\u20132013): impacts, plausible causes and proposed solutions. Food Secur 7:303\u2013321. https:\/\/doi.org\/10.1007\/s12571-015-0446-9","journal-title":"Food Secur"},{"key":"2_CR8","unstructured":"Azinheira HG, Gorgulho R, Vieira A, Talhinhas P, Batista D, Silva MC, Guerra-Guimar\u00e3es L (2013) An integrative analysis of proteomic and transcriptomic data to understand Coffea arabica responses to Hemileia vastatrix. In: Viera N, Saibo N, Oliveira MM (eds) Book of abstracts of the FV 2013\u2014XIII Congresso Luso-Espanhol de Fisiologia Vegetal, Lisboa, Portugal, 24\u201328 July 2013, Abstract, 312 pp"},{"issue":"3","key":"2_CR9","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1111\/ppa.12966","volume":"68","author":"JL Badel","year":"2019","unstructured":"Badel JL, Zambolim L (2019) Coffee bacterial diseases: a plethora of scientific opportunities. Plant Pathol 68(3):411\u2013425","journal-title":"Plant Pathol"},{"key":"2_CR10","doi-asserted-by":"crossref","unstructured":"Bagal UR, Leebens-Mack JH, Lorenz WW, Dean JFD (2012) The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage. BMC Genom 13:S1","DOI":"10.1186\/1471-2164-13-S3-S1"},{"key":"2_CR11","first-page":"738","volume":"34","author":"X Bai","year":"2013","unstructured":"Bai X, Zhou L, Hu Y, Ji G, Li J, Zhang H (2013) Isolation and identification of the pathogen of coffee bacterial blight disease. Chin J Trop Crops 34:738\u2013742","journal-title":"Chin J Trop Crops"},{"key":"2_CR12","first-page":"37","volume":"40","author":"P Baker","year":"2014","unstructured":"Baker P (2014) The \u2018big rust\u2019: an update on the coffee leaf rust situation. Coffee Cocoa Int 40:37\u201339","journal-title":"Coffee Cocoa Int"},{"key":"2_CR13","doi-asserted-by":"publisher","unstructured":"Bekele KB, Senbeta GA, Garedew W, Caixeta ET, Ram\u00edrez-Camejo LA, Aime MC (2022) Genetic diversity and population structure of Hemileia vastatrix from Ethiopian Arabica coffee. Arch Phytopathol Plant Prot 55(13):1483\u20131503. https:\/\/doi.org\/10.1080\/03235408.2021.1983385","DOI":"10.1080\/03235408.2021.1983385"},{"key":"2_CR14","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.21475\/ajcs.2016.10.07.p7693","volume":"10","author":"LL Belan","year":"2016","unstructured":"Belan LL, Pozza EA, Freitas MLO, Raimundi MK, Souza RM, Machado JC (2016) Occurrence of Pseudomonas syringae pv. garcae in coffee seeds. Aust J Crop Sci 10:1015\u20131021","journal-title":"Aust J Crop Sci"},{"key":"2_CR15","doi-asserted-by":"crossref","unstructured":"Beracochea VC, Almasia NI, Peluffo L, Nahir\u00f1ak V, Hopp EH, Paniego N, Heinz RA, Vazquez-Rovere C, Lia VV (2015) Sunflower germin-like protein HaGLP1 promotes ROS accumulation and enhances protection against fungal pathogens in transgenic Arabidopsis thaliana. Plant Cell Rep 34:1717\u20131733","DOI":"10.1007\/s00299-015-1819-4"},{"key":"2_CR16","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1094\/PD-80-0821D","volume":"80","author":"M Beretta","year":"1996","unstructured":"Beretta M, Harakava R, Chagas M, Derrick K, Barthe G, Ceccardi T, Lee R, Paradela O, Sugimori H, Ribeiro I (1996) First report of Xylella fastidiosa in coffee. Plant Dis 80:821","journal-title":"Plant Dis"},{"key":"2_CR17","unstructured":"Bettencourt AJ, Rodrigues Jr CJ (1988) Principles and practice of coffee breeding for resistance to rust and other diseases. In: Clarke RJ, Macrae R (eds) Coffee agronomy, vol IV. Elsevier Applied Science Publishers Ltd, London and New York, pp 199\u2013234"},{"key":"2_CR18","doi-asserted-by":"publisher","first-page":"664","DOI":"10.3389\/fpls.2014.00664","volume":"5","author":"J Bettgenhaeuser","year":"2014","unstructured":"Bettgenhaeuser J, Gilbert B, Ayliffe M, Moscou MJ (2014) Nonhost resistance to rust pathogens\u2014a continuation of continua. Front Plant Sci 5:664","journal-title":"Front Plant Sci"},{"key":"2_CR19","doi-asserted-by":"crossref","unstructured":"Bola\u00f1os C, Zapata M, Brodbeck B, Andersen P, Wessel-Beaver L, Jensen CE (2015) Distribuci\u00f3n espacial de cafetos (Coffea arabica L.) posiblemente enfermos con el encorchamiento de la hoja causado por Xylella fastidiosa en Puerto Rico. J Agric Univ PR 99(2):157\u2013165","DOI":"10.46429\/jaupr.v99i2.3031"},{"key":"2_CR20","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1007\/s10681-017-1901-9","volume":"213","author":"DMS Botelho","year":"2017","unstructured":"Botelho DMS, Resende MLV, Andrade VT, Pereira AA, Patricio FRA, Junior PMR, Ogoshi C, Rezende JC (2017) Cercosporiosis resistance in coffee germplasm collection. Euphytica 213:117. https:\/\/doi.org\/10.1007\/s10681-017-1901-9","journal-title":"Euphytica"},{"key":"2_CR21","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1242\/jcs.237958","volume":"4","author":"TO Bozkurt","year":"2020","unstructured":"Bozkurt TO, Kamoun S (2020) The plant-pathogen haustorial interface at a glance. J Cell Sci 4:133. https:\/\/doi.org\/10.1242\/jcs.237958. PMID: 32132107","journal-title":"J Cell Sci"},{"key":"2_CR22","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1111\/ppa.12411","volume":"65","author":"PGC Cabral","year":"2016","unstructured":"Cabral PGC, Maciel-Zambolim E, Oliveira SAS, Caixeta ET, Zambolim L (2016) Genetic diversity and structure of Hemileia vastatrix populations on Coffea spp. Plant Pathol 65:196\u2013204. https:\/\/doi.org\/10.1111\/ppa.12411","journal-title":"Plant Pathol"},{"key":"2_CR23","doi-asserted-by":"publisher","unstructured":"Couttolenc-Brenis E, Carri\u00f3n GL, Villain L, Ortega-Escalona F, Ram\u00edrez-Mart\u00ednez D, Mata-Rosas M, M\u00e9ndez-Bravo A (2020) Prehaustorial local resistance to coffee leaf rust in a Mexican cultivar involves expression of salicylic acid-responsive genes. Peer J 1\u201321. https:\/\/doi.org\/10.7717\/peerj.8345","DOI":"10.7717\/peerj.8345"},{"key":"2_CR24","doi-asserted-by":"crossref","unstructured":"Cristancho MA, Botero-Rozo DO, Giraldo W, Tabima J, Ria\u00f1o-Pach\u00f3n DM, Escobar C, Rozo Y, Rivera LF, Dur\u00e1n A, Restrepo S, Eilam T, Anikster Y, Gait\u00e1n AL (2014) Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales. Front Plant Sci 5:594","DOI":"10.3389\/fpls.2014.00594"},{"key":"2_CR25","doi-asserted-by":"publisher","first-page":"53","DOI":"10.3389\/fenvs.2014.00053","volume":"2","author":"K Das","year":"2014","unstructured":"Das K, Roychoudhury A (2014) Reactive oxygen species (ROS) and response of antioxidants as ROS-scavengers during environmental stress in plants. Front Environ Sci 2:53","journal-title":"Front Environ Sci"},{"key":"2_CR26","doi-asserted-by":"crossref","unstructured":"Daudi A, Cheng Z, O\u2019Brien JA, Mammarella N, Khan S, Ausubel FM, Paul Bolwell G (2012) The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity. Plant Cell 24:275\u2013287","DOI":"10.1105\/tpc.111.093039"},{"key":"2_CR27","doi-asserted-by":"crossref","unstructured":"Delplace F, Huard-Chauveau C, Berthom\u00e9 R, Roby D (2022) Network organization of the plant immune system: from pathogen perception to robust defense induction. Plant J 109:447\u2013470","DOI":"10.1111\/tpj.15462"},{"issue":"1","key":"2_CR28","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1007\/s10658-011-9925-9","volume":"133","author":"I Diniz","year":"2012","unstructured":"Diniz I, Talhinhas P, Azinheira HG, V\u00e1rzea V, Medeira C, Maia I, Petitot A-S, Nicole M, Fernandez D, Silva MC (2012) Cellular and molecular analyses of coffee resistance to Hemileia vastatrix and nonhost resistance to Uromyces vignae in the resistance-donor genotype HDT832\/2. Eur J Plant Pathol 133(1):141\u2013157. https:\/\/doi.org\/10.1007\/s10658-011-9925-9","journal-title":"Eur J Plant Pathol"},{"key":"2_CR29","unstructured":"Diniz I, Figueiredo A, Sebastiana M, Munoz-Pajarez AJ, Valverde J, Azevedo H, Rodrigues AS, Prakash RS, Pereira AP, Guerra-Guimar\u00e3es L, Azinheira HG, V\u00e1rzea V, Batista D, Silva MC (2021) First steps on the resistance profiling of Kawisari coffee hybrid through cytological and gene expression analyses. In: Book of abstracts of the 28th international conference on coffee science (ASIC), Montpellier, France, 28 June\u20131 July 2021, Abstract, 60 pp"},{"issue":"3","key":"2_CR30","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1007\/s10142-013-0330-7","volume":"13","author":"V Diola","year":"2013","unstructured":"Diola V, Brito GG, Caixeta ET, Pereira LFP, Loureiro ME (2013) A new set of differentially expressed signaling genes is early expressed in coffee leaf rust race II incompatible interaction. Funct Integr Genomics 13(3):379\u2013389. https:\/\/doi.org\/10.1007\/s10142-013-0330-7","journal-title":"Funct Integr Genomics"},{"key":"2_CR31","doi-asserted-by":"publisher","unstructured":"Fernandez D, Santos P, Agostini C, Bon MC, Petitot AS, Silva MC, Guerra-Guimar\u00e3es L, Ribeiro A, Argout X, Nicole M (2004) Coffee (Coffea arabica L.) genes early expressed during infection by the rust fungus (Hemileia vastatrix). Mol Plant Pathol 5(6):527\u2013536. https:\/\/doi.org\/10.1111\/J.1364-3703.2004.00250.X","DOI":"10.1111\/J.1364-3703.2004.00250.X"},{"key":"2_CR32","volume-title":"Coffee berry disease and other Colletotrichum diseases of coffee","author":"ID Firman","year":"1977","unstructured":"Firman ID, Waller JM (1977) Coffee berry disease and other Colletotrichum diseases of coffee, 4th edn. Commonwealth Mycological Institute, Surrey, England","edition":"4"},{"key":"2_CR33","doi-asserted-by":"publisher","unstructured":"Flood J (2021) Coffee wilt diseases. In: Climate-smart production of coffee: achieving sustainability and ecosystem services. CABI, UK. https:\/\/doi.org\/10.19103\/AS.2021.0096.25","DOI":"10.19103\/AS.2021.0096.25"},{"key":"2_CR34","doi-asserted-by":"publisher","unstructured":"Florez JC, Mofatto LS, do Livramento Freitas-Lopes RL, Ferreira SS, Zambolim EM, Carazzolle MF, Zambolim L, Caixeta ET (2017) High throughput transcriptome analysis of coffee reveals prehaustorial resistance in response to Hemileia vastatrix infection. Plant Mol Biol 95(6):607\u2013623. https:\/\/doi.org\/10.1007\/s11103-017-0676-7","DOI":"10.1007\/s11103-017-0676-7"},{"key":"2_CR35","unstructured":"Food and Agriculture Organization of the United Nations (FAO) (2022) Markets and trade 2022. Available online: https:\/\/www.fao.org\/markets-and-trade\/commodities\/coffee\/en\/. Accessed 13 Dec 2022"},{"key":"2_CR36","doi-asserted-by":"publisher","unstructured":"Ganesh D, Petitot AS, Silva MC, Alary R, Lecouls AC, Fernandez D (2006) Monitoring of the early molecular resistance responses of coffee (Coffea arabica L.) to the rust fungus (Hemileia vastatrix) using real-time quantitative RT-PCR. Plant Sci 170(6):1045\u20131051. https:\/\/doi.org\/10.1016\/j.plantsci.2005.12.009","DOI":"10.1016\/j.plantsci.2005.12.009"},{"issue":"9","key":"2_CR37","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1371\/journal.ppat.1004329","volume":"10","author":"DP Garnica","year":"2014","unstructured":"Garnica DP, Nemri A, Upadhyaya NM, Rathjen JP, Dodds PN (2014) The ins and outs of rust haustoria. PLoS Pathog 10(9):10\u201313. https:\/\/doi.org\/10.1371\/journal.ppat.1004329","journal-title":"PLoS Pathog"},{"key":"2_CR38","unstructured":"Guerra-Guimar\u00e3es L, Cardoso S, Martins I, Loureiro A, Bernardes SA, V\u00e1rzea V, Silva MC (2009a) Differential induction of superoxide dismutase in Coffea arabica\u2013Hemileia vastatrix interactions. In: Proceedings of the 22th international conference on coffee science (ASIC), Campinas, Brazil, 14\u201319 Sept 2008, pp 1036\u20131039"},{"key":"2_CR39","doi-asserted-by":"publisher","unstructured":"Guerra-Guimar\u00e3es L, Silva MC, Struck C, Loureiro A, Nicole M, Rodrigues CJ, Ricardo CPP (2009b) Chitinases of Coffea arabica genotypes resistant to orange rust Hemileia vastatrix. Biol Plant 53:702\u2013706. https:\/\/doi.org\/10.1007\/s10535-009-0126-8","DOI":"10.1007\/s10535-009-0126-8"},{"key":"2_CR40","doi-asserted-by":"publisher","unstructured":"Guerra-Guimar\u00e3es L, Tenente R, Pinheiro C, Chaves I, Silva MD, Cardoso FMH, Planchon S, Barros DR, Renaut J, Ricardo CP (2015) Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Front Plant Sci 6:478. https:\/\/doi.org\/10.3389\/fpls.2015.00478","DOI":"10.3389\/fpls.2015.00478"},{"issue":"10","key":"2_CR41","doi-asserted-by":"publisher","first-page":"625","DOI":"10.1111\/j.1439-0434.2008.01538.x","volume":"157","author":"SD Guzzo","year":"2009","unstructured":"Guzzo SD, Harakava R, Tsai SM (2009) Identification of coffee genes expressed during systemic acquired resistance and incompatible interaction with Hemileia vastatrix. J Phytopathol 157(10):625\u2013638. https:\/\/doi.org\/10.1111\/j.1439-0434.2008.01538.x","journal-title":"J Phytopathol"},{"key":"2_CR42","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1006\/anbo.1997.0507","volume":"80","author":"MC Heath","year":"1997","unstructured":"Heath MC (1997) Signalling between pathogenic rust fungi and resistant or susceptible host plants. Ann Bot 80:713\u2013720","journal-title":"Ann Bot"},{"key":"2_CR43","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1023\/A:1026592509060","volume":"44","author":"MC Heath","year":"2000","unstructured":"Heath MC (2000) Hypersensitive response-related death. Plant Mol Biol 44:321\u2013334","journal-title":"Plant Mol Biol"},{"key":"2_CR44","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1016\/j.jare.2010.08.006","volume":"2","author":"H Hindorf","year":"2011","unstructured":"Hindorf H, Omondi CO (2011) A review of three major fungal diseases of Coffea arabica L. in the rainforests of Ethiopia and progress in breeding for resistance in Kenya. J Adv Res 2:109\u2013120. https:\/\/doi.org\/10.1016\/j.jare.2010.08.006","journal-title":"J Adv Res"},{"key":"2_CR45","unstructured":"International Coffee Organization (ICO) (2020) ICO coffee production 2020. Available online: https:\/\/www.ico.org\/prices\/poproduction.pdf. Accessed 13 Dec 2022"},{"key":"2_CR46","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1038\/nature05286","volume":"444","author":"JDG Jones","year":"2006","unstructured":"Jones JDG, Dangl JL (2006) The plant immune system. Nature 444:323\u2013329","journal-title":"Nature"},{"key":"2_CR47","doi-asserted-by":"publisher","unstructured":"Kahn LH (2019) Quantitative framework for coffee leaf rust (Hemileia vastatrix), production and futures. Int J Agric Ext 7:77\u201387. https:\/\/doi.org\/10.33687\/ijae.007.01.2744","DOI":"10.33687\/ijae.007.01.2744"},{"key":"2_CR48","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1094\/pdis-05-21-1072-pdn","volume":"34","author":"L Keith","year":"2021","unstructured":"Keith L, Sugiyama L, Brill E, Adams B-L, Fukada M, Hoffman K, Ocenar J, Kawabata A, Kong A, McKemy J, Olmedo-Velarde A, Melzer M (2021) First report of coffee leaf rust caused by Hemileia vastatrix on coffee (Coffea arabica) in Hawaii. Plant Dis 34:2\u20134. https:\/\/doi.org\/10.1094\/pdis-05-21-1072-pdn","journal-title":"Plant Dis"},{"key":"2_CR49","doi-asserted-by":"crossref","unstructured":"Kemen E, Kemen AC, Rafiqi M, Hempel U, Mendgen K, Hahn M, Voegele RT (2005) Identification of a protein from rust fungi transferred from haustoria into infected plant cells. Mol Plant Microb Interact MPMI 18(11):1130\u20131139. https:\/\/doi.org\/10.1094\/MPMI-18-113","DOI":"10.1094\/MPMI-18-1130"},{"key":"2_CR50","doi-asserted-by":"publisher","first-page":"538","DOI":"10.1007\/978-94-011-5472-7_98","volume-title":"Pseudomonas syringae and related pathogens","author":"A Korobko","year":"1997","unstructured":"Korobko A, Wondinagegne E (1997) Bacterial blight of coffee (Pseudomonas syringae pv. garcae) in Ethiopia. In: Rudoldh K, Burr TJ, Mansfield JW, Stead D, Vivian A, Von Kietzele J (eds) Pseudomonas syringae and related pathogens. Springer, Dordrecht, Netherlands, pp 538\u2013541"},{"key":"2_CR51","doi-asserted-by":"publisher","first-page":"486","DOI":"10.1111\/jph.12583","volume":"165","author":"B Kosaraju","year":"2017","unstructured":"Kosaraju B, Sannasi S, Mishra MK, Subramani D, Bychappa M (2017) Assessment of genetic diversity of coffee leaf rust pathogen Hemileia vastatrix using SRAP markers. J Phytopathol 165:486\u2013493. https:\/\/doi.org\/10.1111\/jph.12583","journal-title":"J Phytopathol"},{"key":"2_CR52","doi-asserted-by":"crossref","unstructured":"Krishnan S (2017) Sustainable coffee production. Denver Botanic Gardens. https:\/\/doi.org\/10.1093\/acrefore\/9780199389414.013.224","DOI":"10.1093\/acrefore\/9780199389414.013.224"},{"key":"2_CR53","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s10681-009-9886-7","volume":"168","author":"A L\u00e9colier","year":"2009","unstructured":"L\u00e9colier A, Besse P, Charrier A, Thierry-Nicolas T, Noirot M (2009) Unraveling the origin of Coffea arabica \u2018Bourbon pointu\u2019 from La R\u00e9union: a historical and scientific perspective. Euphytica 168:1\u201310. https:\/\/doi.org\/10.1007\/s10681-009-9886-7","journal-title":"Euphytica"},{"key":"2_CR54","doi-asserted-by":"crossref","unstructured":"Lecourieux D, Ranjeva R, Pugin A (2006) Calcium in plant defence-signalling pathways. New Phytol 171:249\u2013269","DOI":"10.1111\/j.1469-8137.2006.01777.x"},{"key":"2_CR55","unstructured":"Leit\u00e3o S, Guerra-Guimar\u00e3es L, Bronze MR, Vilas Boas L, S\u00e1 M, Almeida MHG, Silva MC (2011) Chlorogenic acid content in coffee leaves: possible role in coffee leaf rust resistance. In: Proceedings of the 23rd international conference on coffee science (ASIC), Bali, Indonesia, 3\u20138 Oct 2010, pp 743\u2013747"},{"key":"2_CR56","doi-asserted-by":"publisher","first-page":"501","DOI":"10.1094\/PDIS.2001.85.5.501","volume":"85","author":"W-B Li","year":"2001","unstructured":"Li W-B, Pria WD Jr, Teixeira DC, Miranda VS, Ayres A, Franco CF, Costa MG, He C-X, Costa P, Hartung JS (2001) Coffee leaf scorch caused by a strain of Xylella fastidiosa from citrus. Plant Dis 85:501\u2013505","journal-title":"Plant Dis"},{"key":"2_CR57","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1080\/07352689.2020.1757829","volume":"39","author":"P Li","year":"2020","unstructured":"Li P, Lu YJ, Chen H, Day B (2020) The lifecycle of the plant immune system. Crit Rev Plant Sci 39:72\u2013100","journal-title":"Crit Rev Plant Sci"},{"key":"2_CR58","doi-asserted-by":"publisher","first-page":"412","DOI":"10.3390\/horticulturae7100412","volume":"7","author":"L Liao","year":"2021","unstructured":"Liao L, Hu Z, Liu S, Yang Y, Zhou Y (2021) Characterization of germin-like proteins (GLPs) and their expression in response to abiotic and biotic stresses in cucumber. Horticulturae 7:412. https:\/\/doi.org\/10.3390\/horticulturae7100412","journal-title":"Horticulturae"},{"key":"2_CR59","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1007\/s11103-016-0521-4","volume":"92","author":"Q Liu","year":"2016","unstructured":"Liu Q, Yang J, Yan SS, Zhao J, Wang W, Yang T, Wang X, Mao X, Dong J et al (2016) The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice. Plant Mol Biol 92:411\u2013423","journal-title":"Plant Mol Biol"},{"issue":"1","key":"2_CR60","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1016\/j.pmpp.2011.11.002","volume":"77","author":"A Loureiro","year":"2012","unstructured":"Loureiro A, Nicole MR, V\u00e1rzea V, Moncada P, Bertrand B, Silva MC (2012) Coffee resistance to Colletotrichum kahawae is associated with lignification, accumulation of phenols and cell death at infection sites. Physiol Mol Plant Pathol 77(1):23\u201332. https:\/\/doi.org\/10.1016\/j.pmpp.2011.11.002","journal-title":"Physiol Mol Plant Pathol"},{"issue":"009","key":"2_CR61","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1079\/PAVSNNR202015009","volume":"15","author":"F Maghuly","year":"2020","unstructured":"Maghuly F, Jankowicz-Cieslak J, Bado S (2020) Improving coffee species for pathogen resistance. CAB Rev 15(009):1\u201318. https:\/\/doi.org\/10.1079\/PAVSNNR202015009","journal-title":"CAB Rev"},{"key":"2_CR62","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1007\/s13313-013-0213-3","volume":"42","author":"TA Maia","year":"2013","unstructured":"Maia TA, Maciel-Zambolim E, Caixeta ET, Mizubuti ESG, Zambolim L (2013) The population structure of Hemileia vastatrix in Brazil inferred from AFLP. Australas Plant Pathol 42:533\u2013542. https:\/\/doi.org\/10.1007\/s13313-013-0213-3","journal-title":"Australas Plant Pathol"},{"key":"2_CR63","doi-asserted-by":"publisher","first-page":"1460","DOI":"10.3390\/plants9111460","volume":"9","author":"D Martins","year":"2020","unstructured":"Martins D, Ara\u00fajo SD, Rubiales D, Patto MCV (2020) Legume crops and biotrophic pathogen interactions: a continuous cross-talk of a multilayered array of defense mechanisms. Plants 9:1460","journal-title":"Plants"},{"issue":"2","key":"2_CR64","first-page":"145","volume":"15","author":"V Maxemiuc-Naccache","year":"1992","unstructured":"Maxemiuc-Naccache V, Braga MR, Dietrich SMC (1992) Chitinase and beta-1,3-glucanase changes in compatible and incompatible combinations between coffee leaf disks and coffee rust (Hemileia vastatrix). Rev Bras Bot 15(2):145\u2013150","journal-title":"Rev Bras Bot"},{"key":"2_CR65","doi-asserted-by":"publisher","first-page":"150","DOI":"10.1038\/129510a0","volume":"129","author":"WW Mayne","year":"1932","unstructured":"Mayne WW (1932) Physiological specializalion of Hemileia vastatrix. B. & Br. Nature 129:150","journal-title":"Nature"},{"key":"2_CR66","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1146\/annurev-phyto-082718-100109","volume":"58","author":"S McCook","year":"2020","unstructured":"McCook S, Peterson PD (2020) The geopolitics of plant pathology: Frederick Wellman, coffee leaf rust, and cold war networks of science. Annu Rev Phytopathol 58:181\u2013199. https:\/\/doi.org\/10.1146\/annurev-phyto-082718-100109","journal-title":"Annu Rev Phytopathol"},{"key":"2_CR67","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/S0007-1536(26)80033-6","volume":"11","author":"L McDonald","year":"1926","unstructured":"McDonald L (1926) A preliminary account of a disease of green coffee berries in Kenya Colony. Trans Br Mycol Soc 11:145\u2013154","journal-title":"Trans Br Mycol Soc"},{"key":"2_CR68","doi-asserted-by":"crossref","unstructured":"Meng X, Zhang S (2013) MAPK cascades in plant disease resistance signaling. Annu Rev Phytopathol 51:245\u2013266","DOI":"10.1146\/annurev-phyto-082712-102314"},{"key":"2_CR69","doi-asserted-by":"publisher","unstructured":"Nnadi NE, Carter DA (2021) Climate change and the emergence of fungal pathogens. PLoS Pathog 17(4):e1009503. https:\/\/doi.org\/10.1371\/journal.ppat.1009503","DOI":"10.1371\/journal.ppat.1009503"},{"key":"2_CR70","doi-asserted-by":"publisher","first-page":"2021","DOI":"10.1139\/b67-220","volume":"45","author":"M Noronha-Wagner","year":"1967","unstructured":"Noronha-Wagner M, Bettencourt AJ (1967) Genetic study of the resistance of Coffea spp. to leaf rust. Can J Bot 45:2021\u20132031","journal-title":"Can J Bot"},{"key":"2_CR71","doi-asserted-by":"publisher","first-page":"583","DOI":"10.3389\/fpls.2019.00583","volume":"10","author":"Y Pei","year":"2019","unstructured":"Pei Y, Li X, Zhu Y, Ge X, Sun Y, Liu N, Jia Y, Li F, Hou Y (2019) GhABP19, a novel germin-like protein from Gossypium hirsutum, plays an important role in the regulation of resistance to verticillium and fusarium wilt pathogens. Front Plant Sci 10:583","journal-title":"Front Plant Sci"},{"key":"2_CR72","unstructured":"Penel C (2000) The peroxidase system in higher plants. In: Greppin H et al (eds) Integrated plant systems. University of Geneva, pp 359\u2013367"},{"key":"2_CR73","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1006380","volume":"13","author":"S Periyannan","year":"2017","unstructured":"Periyannan S, Milne RJ, Figueroa M, Lagudah ES, Dodds PN (2017) An overview of genetic rust resistance: from broad to specific mechanisms. PLoS Pathog 13:e1006380","journal-title":"PLoS Pathog"},{"issue":"3","key":"2_CR74","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1007\/s11295-007-0117-x","volume":"4","author":"AS Petitot","year":"2008","unstructured":"Petitot AS, Lecouls AC, Fernandez D (2008) Sub-genomic origin and regulation patterns of a duplicated WRKY gene in the allotetraploid species Coffea arabica. Tree Genet Genomes 4(3):379\u2013390. https:\/\/doi.org\/10.1007\/s11295-007-0117-x","journal-title":"Tree Genet Genomes"},{"key":"2_CR75","doi-asserted-by":"publisher","unstructured":"Petitot AS, Barsalobres-Cavallari C, Ramiro D, Albuquerque Freire E, Etienne H, Fernandez D (2013a) Promoter analysis of the WRKY transcription factors CaWRKY1a and CaWRKY1b homoeologous genes in coffee (Coffea arabica). Plant Cell Rep 32(8):1263\u20131276. https:\/\/doi.org\/10.1007\/s00299-013-1440-3","DOI":"10.1007\/s00299-013-1440-3"},{"key":"2_CR76","unstructured":"Petitot AS, Severino FE, Maia IG, Fernandez D (2013b) Host response profiling to fungal infection: molecular cloning, characterization and expression analysis of NPR1 gene from coffee (Coffea arabica). In: Microbial pathogens and strategies for combating them: science, technology and education, pp 411\u2013418"},{"key":"2_CR77","unstructured":"Phiri AN, Baker P (2009) Coffee wilt in Africa. Final technical report of the regional coffee wilt programme (2000\u20132007). CABI"},{"key":"2_CR78","doi-asserted-by":"publisher","first-page":"1291","DOI":"10.1094\/PHYTO-04-15-0097-R","volume":"106","author":"F Pinard","year":"2016","unstructured":"Pinard F, Makune SE, Campagne P, Mwangi J (2016) Spatial distribution of coffee wilt disease under roguing and replanting conditions: a case study from Kaweri Estate in Uganda. Phytopathology 106:1291\u20131299","journal-title":"Phytopathology"},{"key":"2_CR79","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0215598","volume":"14","author":"BN Porto","year":"2019","unstructured":"Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, de Resende MLV (2019) Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. PLoS ONE 14:e0215598. https:\/\/doi.org\/10.1371\/journal.pone.0215598","journal-title":"PLoS ONE"},{"key":"2_CR80","doi-asserted-by":"publisher","first-page":"309","DOI":"10.3389\/fpls.2020.00309","volume":"11","author":"KF Possa","year":"2020","unstructured":"Possa KF, Silva JAG, Resende MLV, Tenente R, Pinheiro C, Chaves I, Planchon S, Monteiro ACA, Renaut J, Carvalho MAF et al (2020) Primary metabolism is distinctly modulated by plant resistance inducers in Coffea arabica leaves infected by Hemileia vastatrix. Front Plant Sci 11:309. https:\/\/doi.org\/10.3389\/fpls.2020.00309","journal-title":"Front Plant Sci"},{"key":"2_CR81","doi-asserted-by":"publisher","unstructured":"Quispe-Apaza C, Mansilla-Samaniego R, Espejo-Joya R, Bernacchia G, Yabar-Larios M, L\u00f3pez-Bonilla C (2021) Spatial and temporal genetic diversity and population structure of Hemileia vastatrix from Peruvian coffee plantations. Plant Pathol J 37(3):280\u2013290. https:\/\/doi.org\/10.5423\/PPJ.OA.10.2020.0192","DOI":"10.5423\/PPJ.OA.10.2020.0192"},{"key":"2_CR82","doi-asserted-by":"crossref","unstructured":"Ramalho TO, Figueira AR, Sotero AJ, Wang R, Geraldino Duarte PS, Farman M, Goodin MM (2014) Characterization of coffee ringspot virus-lavras: a model for an emerging threat to coffee production and quality. Virology 464\u2013465:385\u2013396","DOI":"10.1016\/j.virol.2014.07.031"},{"key":"2_CR83","doi-asserted-by":"publisher","first-page":"335","DOI":"10.1007\/s00705-015-2663-0","volume":"161","author":"TO Ramalho","year":"2016","unstructured":"Ramalho TO, Figueira AR, Wang R et al (2016) Detection and survey of coffee ringspot virus in Brazil. Arch Virol 161:335\u2013343. https:\/\/doi.org\/10.1007\/s00705-015-2663-0","journal-title":"Arch Virol"},{"issue":"5","key":"2_CR84","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1111\/j.1365-3059.2009.02122.x","volume":"58","author":"D Ramiro","year":"2009","unstructured":"Ramiro D, Escoute J, Petitot AS, Nicole M, Maluf MP, Fernandez D (2009) Biphasic haustorial differentiation of coffee rust (Hemileia vastatrix race II) associated with defence responses in resistant and susceptible coffee cultivars. Plant Pathol 58(5):944\u2013955. https:\/\/doi.org\/10.1111\/j.1365-3059.2009.02122.x","journal-title":"Plant Pathol"},{"key":"2_CR85","doi-asserted-by":"publisher","unstructured":"Ramiro D, Jalloul A, Petitot AS, Grossi de S\u00e1 MF, Maluf MP, Fernandez D (2010) Identification of coffee WRKY transcription factor genes and expression profiling in resistance responses to pathogens. Tree Genet Genomes 6(5):767\u2013781. https:\/\/doi.org\/10.1007\/s11295-010-0290-1","DOI":"10.1007\/s11295-010-0290-1"},{"key":"2_CR86","first-page":"831","volume":"60","author":"AH Ramos","year":"1976","unstructured":"Ramos AH, Shavdia LD (1976) A die-back of coffee in Kenya. Plant Dis Rep 60:831\u2013835","journal-title":"Plant Dis Rep"},{"key":"2_CR87","doi-asserted-by":"publisher","unstructured":"Rhiney K, Guido Z, Knudson C, Avelino J, Bacon CM, Leclerc G, Aime MC, Bebber DP (2021) Epidemics and the future of coffee production. Proc Natl Acad Sci USA 118. https:\/\/doi.org\/10.1073\/pnas.2023212118","DOI":"10.1073\/pnas.2023212118"},{"key":"2_CR88","unstructured":"Ritschel A (2005) Monograph of the genus Hemileia (Uredinales). In: Bresinsky A, Butin H, Tudzinski P (eds) Bibliotheca mycologica, vol 200, pp 3\u2013132"},{"key":"2_CR89","doi-asserted-by":"crossref","unstructured":"Robert-Seilaniantz A, Grant M, Jones JD (2011) Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism. Annu Rev Phytopathol 49:317\u2013343","DOI":"10.1146\/annurev-phyto-073009-114447"},{"key":"2_CR90","first-page":"5","volume":"15","author":"CJ Rodrigues Jr","year":"1990","unstructured":"Rodrigues CJ Jr (1990) Coffee rusts: history, taxonomy, morphology, distribution and host resistance. Fitopatol Bras 15:5\u20139","journal-title":"Fitopatol Bras"},{"key":"2_CR91","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1146\/annurev.py.13.090175.000405","volume":"13","author":"CJ Rodrigues Jr","year":"1975","unstructured":"Rodrigues CJ Jr, Bettencourt AJ, Rijo L (1975) Races of the pathogen and resistance to coffee rust. Annu Rev Phytopathol 13:49\u201370","journal-title":"Annu Rev Phytopathol"},{"key":"2_CR92","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1094\/PDIS.2002.86.5.564B","volume":"86","author":"J Rodrigues","year":"2002","unstructured":"Rodrigues J, Rodriguez C, Moreira L, Villalobos W, Rivera C, Childers C (2002) Occurrence of coffee ringspot virus a Brevipalpus miteborne virus in coffee in Costa Rica. Plant Dis 86:564\u2013564. https:\/\/doi.org\/10.1094\/PDIS.2002.86.5.564B","journal-title":"Plant Dis"},{"issue":"9","key":"2_CR93","doi-asserted-by":"publisher","first-page":"1998","DOI":"10.1094\/PHYTO-09-21-0376-R","volume":"112","author":"ASB Rodrigues","year":"2022","unstructured":"Rodrigues ASB, Silva DN, V\u00e1rzea V, Paulo OS, Batista D (2022) Worldwide population structure of the coffee rust fungus Hemileia vastatrix is strongly shaped by local adaptation and breeding history. Phytopathology 112(9):1998\u20132011. https:\/\/doi.org\/10.1094\/PHYTO-09-21-0376-R","journal-title":"Phytopathology"},{"key":"2_CR94","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1094\/PDIS.2001.85.9.1027A","volume":"85","author":"CM Rodr\u00edguez","year":"2001","unstructured":"Rodr\u00edguez CM, Obando W, Villalobos RC (2001) First report of Xylella fastidiosa infecting coffee in Costa Rica. Plant Dis 85:1027","journal-title":"Plant Dis"},{"key":"2_CR95","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1006\/pmpp.1993.1051","volume":"43","author":"ML Rojas","year":"1993","unstructured":"Rojas ML, Montes de G\u00f3mez V, Ocampo CA (1993) Stimulation of lipoxygenase activity in cotyledonary leaves of coffee reacting hypersensitively to the coffee leaf rust. Physiol Mol Plant Pathol 43:209\u2013219","journal-title":"Physiol Mol Plant Pathol"},{"key":"2_CR96","doi-asserted-by":"publisher","first-page":"732","DOI":"10.1111\/jph.12024","volume":"160","author":"Y Rozo","year":"2012","unstructured":"Rozo Y, Escobar C, Gaitan A, Cristancho M (2012) Aggressiveness and genetic diversity of Hemileia vastatrix during an epidemic in Colombia. J Phytopathol 160:732\u2013740. https:\/\/doi.org\/10.1111\/jph.12024","journal-title":"J Phytopathol"},{"key":"2_CR97","doi-asserted-by":"publisher","unstructured":"S\u00e1 M, Ferreira JP, Queiroz VT, Vilas-Boas L, Silva MC, Almeida MH, Guerra-Guimar\u00e3es L, Bronze MR (2014) A liquid chromatography\/electrospray ionisation tandem mass spectrometry method for the simultaneous quantification of salicylic, jasmonic and abscisic acids in Coffea arabica leaves. J Sci Food Agric 94:529\u2013536. https:\/\/doi.org\/10.1002\/jsfa.6288","DOI":"10.1002\/jsfa.6288"},{"key":"2_CR98","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1016\/j.plaphy.2021.10.011","volume":"168","author":"M Saleem","year":"2021","unstructured":"Saleem M, Fariduddin Q, Castroverde CDM (2021) Salicylic acid: a key regulator of redox signalling and plant immunity. Plant Physiol Biochem 168:381\u2013397. https:\/\/doi.org\/10.1016\/j.plaphy.2021.10.011","journal-title":"Plant Physiol Biochem"},{"key":"2_CR99","doi-asserted-by":"publisher","first-page":"473","DOI":"10.1007\/s40858-018-0246-9","volume":"43","author":"MF Santana","year":"2018","unstructured":"Santana MF, Zambolim EM, Caixeta ET, Zambolim L (2018) Population genetic structure of the coffee pathogen Hemileia vastatrix in Minas Gerais, Brazil. Trop Plant Pathol 43:473\u2013476. https:\/\/doi.org\/10.1007\/s40858-018-0246-9","journal-title":"Trop Plant Pathol"},{"key":"2_CR100","doi-asserted-by":"publisher","first-page":"79","DOI":"10.1086\/314113","volume":"160","author":"MC Silva","year":"1999","unstructured":"Silva MC, Nicole M, Rijo L, Geiger JP, Rodrigues CJ (1999) Cytochemistry of plant\u2013rust fungus interface during the compatible interaction Coffea arabica (cv. Caturra)\u2013Hemileia vastatrix (race III). Int J Plant Sci 160:79\u201391","journal-title":"Int J Plant Sci"},{"key":"2_CR101","unstructured":"Silva MC, Loureiro A, Guerra-Guimar\u00e3es L, Nicole M, Valente P, Rodrigues Jr CJ (2001) Active oxygen metabolism in the hypersensitive response of coffee\u2013rust interaction. In: Proceedings of the 11th congress of the Mediterranean phytopathological union & 3rd congress of the Sociedade Portuguesa de Fitopatologia, \u00c9vora, Portugal, 17\u201320 Sept 2001, pp 346\u2013348"},{"key":"2_CR102","doi-asserted-by":"publisher","unstructured":"Silva MC, Nicole M, Guerra-Guimar\u00e3es L, Rodrigues CJ (2002) Hypersensitive cell death and post-haustorial defence responses arrest the orange rust (Hemileia vastatrix) growth in resistant coffee leaves. Physiol Mol Plant Pathol 60:169\u2013183. https:\/\/doi.org\/10.1006\/pmpp.2002.0389","DOI":"10.1006\/pmpp.2002.0389"},{"key":"2_CR103","doi-asserted-by":"publisher","unstructured":"Silva MC, V\u00e1rzea V, Guerra-Guimar\u00e3es L, Azinheira HG, Fernandez D, Petitot A-S, Bertrand B, Lashermes P, Nicole M (2006) Coffee resistance to the main diseases: leaf rust and coffee berry disease. Braz J Plant Physiol 18:119\u2013147. https:\/\/doi.org\/10.1590\/S1677-04202006000100010","DOI":"10.1590\/S1677-04202006000100010"},{"key":"2_CR104","doi-asserted-by":"publisher","unstructured":"Silva MC, Guerra-Guimar\u00e3es L, Loureiro A, Nicole MR (2008) Involvement of peroxidases in the coffee resistance to orange rust (Hemileia vastatrix). Physiol Mol Plant Pathol 72:29\u201338. https:\/\/doi.org\/10.1016\/j.pmpp.2008.04.004","DOI":"10.1016\/j.pmpp.2008.04.004"},{"key":"2_CR105","doi-asserted-by":"publisher","first-page":"1742","DOI":"10.1111\/mpp.12657","volume":"19","author":"DN Silva","year":"2018","unstructured":"Silva DN, V\u00e1rzea V, Paulo OS, Batista D (2018) Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust. Mol Plant Pathol 19:1742\u20131753. https:\/\/doi.org\/10.1111\/mpp.12657","journal-title":"Mol Plant Pathol"},{"key":"2_CR106","doi-asserted-by":"publisher","unstructured":"Silva MC, Guerra-Guimar\u00e3es L, Diniz I, Loureiro A, Azinheira H, Pereira AP, Tavares S, Batista D, V\u00e1rzea V (2022) An overview of the mechanisms involved in coffee\u2013Hemileia vastatrix interactions: plant and pathogen perspectives. Agronomy 12(2):326. https:\/\/doi.org\/10.3390\/agronomy12020326","DOI":"10.3390\/agronomy12020326"},{"key":"2_CR107","doi-asserted-by":"crossref","unstructured":"Sultana T, Deeba F, Naz F, Rose RJ, Saqlan Naqvi SM (2016) Expression of a rice GLP in Medicago truncatula exerting pleiotropic effects on resistance against Fusarium oxysporum through enhancing FeSOD-like activity. Acta Physiol Plant 38:255","DOI":"10.1007\/s11738-016-2273-9"},{"key":"2_CR108","doi-asserted-by":"publisher","unstructured":"Talhinhas P, Batista D, Diniz I, Vieira A, Silva DN, Loureiro A, Tavares, S, Pereira AP, Azinheira HG, Guerra-Guimar\u00e3es L, V\u00e1rzea V, Silva MC (2017) The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics. Mol Plant Pathol 18:1039\u20131051. https:\/\/doi.org\/10.1111\/mpp.12512","DOI":"10.1111\/mpp.12512"},{"key":"2_CR109","doi-asserted-by":"publisher","unstructured":"Tobias PA, Edwards RJ, Surana P, Mangelson H, In\u00e1cio V, Silva MC, V\u00e1rzea V, Park R, Batista D (2022) A chromosome-level genome resource for studying virulence mechanisms and evolution of the coffee rust pathogen Hemileia vastatrix. bioRxiv. https:\/\/doi.org\/10.1101\/2022.07.29.502101","DOI":"10.1101\/2022.07.29.502101"},{"issue":"2","key":"2_CR110","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1104\/pp.106.079467","volume":"141","author":"MA Torres","year":"2006","unstructured":"Torres MA, Jones JD, Dangl JL (2006) Reactive oxygen species signaling in response to pathogens. Plant Physiol 141(2):373\u2013378. https:\/\/doi.org\/10.1104\/pp.106.079467","journal-title":"Plant Physiol"},{"key":"2_CR111","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1007\/s10681-008-9769-3","volume":"165","author":"HAM Van der Vossen","year":"2009","unstructured":"Van der Vossen HAM, Walyaro DJ (2009) Additional evidence for oligogenic inheritance of durable host resistance to coffee berry disease (Colletotrichum kahawae) in arabica coffee (Coffea arabica L.). Euphytica 165:105\u2013111. https:\/\/doi.org\/10.1007\/s10681-008-9769-3","journal-title":"Euphytica"},{"key":"2_CR112","unstructured":"Vermerris W, Nicholson R (2006) Phenolic compound biochemistry. ISBN: 9781402051630"},{"issue":"1","key":"2_CR113","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/s10681-011-0358-5","volume":"179","author":"RT Voegele","year":"2011","unstructured":"Voegele RT, Mendgen KW (2011) Nutrient uptake in rust fungi: how sweet is parasitic life? Euphytica 179(1):41\u201355. https:\/\/doi.org\/10.1007\/s10681-011-0358-5","journal-title":"Euphytica"},{"key":"2_CR114","unstructured":"Wang A, Avelino J (1999) El ojo de gallo (Mycena citricolor). In: Bertrand B, Rapidel B (eds) Desaf\u00edos de la caficultura en Centroam\u00e9rica. IICA, CRI, San Jos\u00e9, pp 243\u2013260"},{"key":"2_CR115","first-page":"47","volume":"2","author":"F Wellman","year":"1952","unstructured":"Wellman F (1952) Peligro de introducci\u00f3n de la Hemileia del caf\u00e9 a las Am\u00e9ricas. Turrialba 2:47\u201350","journal-title":"Turrialba"},{"key":"2_CR116","doi-asserted-by":"crossref","unstructured":"Zhang H, Gao Z, Zheng X, Zhang Z (2012) The role of G-proteins in plant immunity. Plant Signal Behav 7:1284\u20131288","DOI":"10.4161\/psb.21431"},{"issue":"3","key":"2_CR117","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1094\/MPMI-08-15-0194-FI","volume":"29","author":"QH Zhu","year":"2016","unstructured":"Zhu QH, Shan WX, Ayliffe MA, Wang MB (2016) Epigenetic mechanisms: an emerging player in plant-microbe interactions. Mol Plant Microbe Interact 29(3):187\u2013196. https:\/\/doi.org\/10.1094\/MPMI-08-15-0194-FI","journal-title":"Mol Plant Microbe Interact"},{"key":"2_CR118","doi-asserted-by":"publisher","first-page":"843","DOI":"10.1590\/S0006-87052011000400017","volume":"70","author":"DM Zoccoli","year":"2011","unstructured":"Zoccoli DM, Takatsu A, Uesugi CH (2011) Ocorr\u00eancia de mancha aureolada em cafeeiros na regi\u00e3o do Tri\u00e2ngulo Mineiro e Alto Parana\u00edba. Bragantia 70:843\u2013849","journal-title":"Bragantia"}],"container-title":["Mutation Breeding in Coffee with Special Reference to Leaf Rust"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-662-67273-0_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,30]],"date-time":"2023-09-30T05:03:35Z","timestamp":1696050215000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-662-67273-0_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023]]},"ISBN":["9783662672723","9783662672730"],"references-count":118,"URL":"https:\/\/doi.org\/10.1007\/978-3-662-67273-0_2","relation":{},"subject":[],"published":{"date-parts":[[2023]]},"assertion":[{"value":"1 October 2023","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}